BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016658
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEE9|SR45_ARATH Arginine/serine-rich protein 45 OS=Arabidopsis thaliana GN=SR45
PE=1 SV=1
Length = 414
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+SLVL++DSLSRNVNE HL+EIF NFGEV+ VE+ MDRAVNLPRG GYV FK RADAEK
Sbjct: 95 QESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
Query: 166 AQLYMDG 172
AQLYMDG
Sbjct: 155 AQLYMDG 161
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1
Length = 308
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 77 SPAVAARRGRSPAPPSKR--ASSPPRKAS-----TENDSLVLYIDSLSRNVNEGHLREIF 129
+PAVAA G PPS R A P K + +D L + +LS + ++ LRE+F
Sbjct: 186 NPAVAASAGGKYVPPSMRGGAKGPGEKMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELF 245
Query: 130 SNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172
FG VV V + DR + +G +V F+ R DA++A+ +DG
Sbjct: 246 MRFGRVVRVYVGRDRETGICKGYAFVSFENREDADRARQKVDG 288
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1 OS=Rattus norvegicus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDE----KERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|Q6PG31|RNPS1_DANRE RNA-binding protein with serine-rich domain 1 OS=Danio rerio
GN=rnps1 PE=2 SV=1
Length = 283
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDR-AVNLPRGSGYVRFKTRADAEKAQLY 169
LY+ L+RNV + H++EIF+ +G++ +++ DR N+ +G YV +++ DA+KA +
Sbjct: 139 LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKALKH 198
Query: 170 MDG 172
MDG
Sbjct: 199 MDG 201
>sp|Q5NVM8|RNPS1_PONAB RNA-binding protein with serine-rich domain 1 OS=Pongo abelii
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDEK----ERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|Q99M28|RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 OS=Mus musculus
GN=Rnps1 PE=2 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDEK----ERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1 OS=Macaca
fascicularis GN=RNPS1 PE=2 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDEK----ERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 OS=Homo sapiens
GN=RNPS1 PE=1 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDEK----ERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|A6QR16|RNPS1_BOVIN RNA-binding protein with serine-rich domain 1 OS=Bos taurus
GN=RNPS1 PE=2 SV=1
Length = 305
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 23/107 (21%)
Query: 68 RSPPPQRNKSPAVAARRGRSPAP-PSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLR 126
+S PP+R++ R+ RSP+P P+K ++I L+RNV + H+
Sbjct: 140 KSKPPKRDEK----ERKRRSPSPKPTK-----------------VHIGRLTRNVTKDHIM 178
Query: 127 EIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLYMDG 172
EIFS +G++ +++ ++R +L +G YV F+ +AEKA +MDG
Sbjct: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG 225
>sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis
GN=rnps1-b PE=2 SV=1
Length = 283
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ +DR +L +G YV F+ +AEKA +
Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199
Query: 170 MDGFHRLQSLLQLLQREIVRELIMSVLILRRM 201
MDG Q+ +EI +++ +R M
Sbjct: 200 MDGG-------QIDGQEITASAVLTPWPMRAM 224
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 78 PAVAARRGRSPAPPSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD 137
P RRGRSP+P + + + L + +L + + LR+ F FG V D
Sbjct: 11 PRGYGRRGRSPSPRGRYG------GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKD 64
Query: 138 VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF 173
+ L D PRG G+V+F ADA A+ +MDG+
Sbjct: 65 IYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGY 100
>sp|Q5XG24|RNP1A_XENLA RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis
GN=rnps1-a PE=2 SV=1
Length = 283
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ +DR +L +G YV F+ +AEKA +
Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199
Query: 170 MDG 172
MDG
Sbjct: 200 MDG 202
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%)
Query: 101 KASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTR 160
K +D L + ++S E LR++F FG V V L DR L +G ++ F R
Sbjct: 209 KYGERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADR 268
Query: 161 ADAEKAQLYMDGF 173
+DA KA MDGF
Sbjct: 269 SDAVKACAKMDGF 281
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL + +N+ + ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 122 LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181
Query: 171 DG 172
+G
Sbjct: 182 NG 183
Score = 38.5 bits (88), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168
+++ +LS +E L ++F FG V +V+++ D N +G G+V +A A
Sbjct: 265 WCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIA 324
Query: 169 YMDGFHRLQSLLQL 182
++G+ +LQ+
Sbjct: 325 SLNGYRLGDRVLQV 338
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L ++ L +N+ + + +F + GE+ +LV D+ G G+V + DA+KA +
Sbjct: 36 LIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTL 95
Query: 171 DGFHRLQS 178
+G +LQ+
Sbjct: 96 NGL-KLQT 102
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 72 PQRNKSPAVAARRGRSPAPPSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSN 131
P NK P ++ P + + S P ++ +++ L V E HLR++FS
Sbjct: 252 PAANKKPVGTPQKATYQNPQATQGESDP-------NNTTIFVGGLDPTVAEEHLRQVFSP 304
Query: 132 FGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172
+GE+V V++V + G+V+F TRA AE+A ++G
Sbjct: 305 YGELVHVKIVAGKRC------GFVQFGTRASAEQALSSLNG 339
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG + ++L+MD +G G++ F A+KA +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 171 DGFH 174
+GF
Sbjct: 312 NGFE 315
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 91 PSKRASSPPRK-----ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA 145
P ++ SP R+ E D+ ++ L+ + L E FS G+V DV ++ DR
Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189
Query: 146 VNLPRGSGYVRF 157
+G YV F
Sbjct: 190 SRRSKGIAYVEF 201
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG + ++L+MD +G G++ F A+KA +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 171 DGFH 174
+GF
Sbjct: 312 NGFE 315
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 91 PSKRASSPPRK-----ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA 145
P ++ SP R+ E D+ ++ L+ + L E FS G+V DV ++ DR
Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189
Query: 146 VNLPRGSGYVRF 157
+G YV F
Sbjct: 190 SRRSKGIAYVEF 201
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG + ++L+MD +G G++ F A+KA +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 171 DGFH 174
+GF
Sbjct: 312 NGFE 315
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 91 PSKRASSPPRK-----ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA 145
P ++ SP R+ E D+ ++ L+ + L E FS G+V DV ++ DR
Sbjct: 130 PFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRN 189
Query: 146 VNLPRGSGYVRF 157
+G YV F
Sbjct: 190 SRRSKGIAYVEF 201
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium discoideum GN=tra2
PE=3 SV=1
Length = 326
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 20/133 (15%)
Query: 54 SSSSSPSRSTNSRSRSPP----------PQRNKSPAVAA--RRGRSPAPPSKR------- 94
S SP R NSR RSPP P R SP RG SP+ KR
Sbjct: 40 SRERSPPRG-NSRERSPPRGGSPNRGGSPNRGGSPNRGGSPNRGGSPSRDDKRRYGNGGN 98
Query: 95 ASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGY 154
+ R A+T + S VL + L+ E L++ FS FG++ V+L+MDR + G+
Sbjct: 99 GETRNRLANTASPSNVLGVFGLAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGF 158
Query: 155 VRFKTRADAEKAQ 167
V F+ + DA +A+
Sbjct: 159 VYFENKEDAVRAK 171
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 102 ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRA 161
+ E D+ +++ LS + ++ L++ F+ FGEVVD + MD RG G++ FK A
Sbjct: 62 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 121
Query: 162 DAEK 165
EK
Sbjct: 122 SVEK 125
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 122 EGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFK 158
E +RE F FGE+ +EL MD +N RG ++ FK
Sbjct: 167 EEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK 203
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 50 SRSLSSSSSPSRSTNSRSRSPPPQRNKSPAVAARRGRSP-APPSKRASSPPRKASTENDS 108
S +S++ + + N + P +P V A SP A PS ++ P AS
Sbjct: 2 SAEVSTTPAADNTVNGTPEATNPAATSAPEVTAVESASPSATPS---ANQPHSAS----- 53
Query: 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
LY+ L +V E L E+FS+ G+V + + D G YV + AD E+A
Sbjct: 54 --LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 109
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+YI ++ + V + R++F FGE+ L D+ RG G+V F T A+ A
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAA 289
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 74 RNKSPAVAARRGRSPAPPSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSNFG 133
+ K+PA + P P+ S +S L++ +LS N+N+ ++E F G
Sbjct: 283 KKKTPAATKSQNDEPKTPASNQSQG-------TESATLFMGNLSFNLNQDQVKEFFQEVG 335
Query: 134 EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
EV+ V L RG G+V+F + +A+KA
Sbjct: 336 EVISVRLATHED-GSSRGFGHVQFASSEEAKKA 367
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 108 SLVLYIDSLSRNVNEGHLREI----FSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
S +++ ++ E +RE F++ GE+ V + MDR +G Y+ FK +A
Sbjct: 410 SQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASF 469
Query: 164 EKA 166
KA
Sbjct: 470 SKA 472
>sp|Q1DPD9|EIF3G_COCIM Eukaryotic translation initiation factor 3 subunit G
OS=Coccidioides immitis (strain RS) GN=TIF35 PE=3 SV=2
Length = 289
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 105 ENDSL-VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
E D L L + ++S EG LR++F FG V V L D+ N+ +G ++ F RADA
Sbjct: 204 ERDELATLRVTNVSELAEEGELRDMFGRFGHVTRVFLAKDKETNMAKGFAFISFADRADA 263
Query: 164 EKAQLYMDGF 173
+A MDGF
Sbjct: 264 ARACEKMDGF 273
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168
+ LY+ SL N+ E LR IF FG++ ++ L+ D +G G++ F A +A
Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322
Query: 169 YMDGFH 174
++GF
Sbjct: 323 QLNGFE 328
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 30 GSDSRSSSRSLSSRSRSLSRSRSLSSSSSPSRSTNSRSRSPPPQRNKSPAVAARRGRSPA 89
G R SRS R S SRSR R RSPP A R G S +
Sbjct: 95 GRQCRHRSRSWDRRHGSESRSRD------HRREDRVHYRSPPL------ATGYRYGHSKS 142
Query: 90 PPSKRASSPPRK-----ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDR 144
P R SP R+ + E D+ ++ L+ + L + FS G+V DV ++ DR
Sbjct: 143 P-HFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR 201
Query: 145 AVNLPRGSGYVRF 157
+G YV F
Sbjct: 202 NSRRSKGIAYVEF 214
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
+++ LS ++++ L++ F + G V+ ++ +R + RG GYV F+ ++ AEKA
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 170 MDG 172
M G
Sbjct: 229 MQG 231
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
S L++ +LS N + + E+F+ GEVV V + P+G GYV+F DA+KA
Sbjct: 266 SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 87 SPAPPSKRASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV 146
+PAP S +++ S LY+ L +V E L E+FS+ G+V + + D
Sbjct: 27 APAPEVTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVT 86
Query: 147 NLPRGSGYVRFKTRADAEKA 166
G YV + AD E+A
Sbjct: 87 RRSLGYAYVNYNNTADGERA 106
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+YI ++ ++V E RE+F FGE+ L D+ RG G+V F T A+ A
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAA 286
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
S LY+ L +V E L E+FS G V + + D G YV + T AD EKA
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+Y+ +++ V + RE+F+ FGEV L D+ RG G+V F T A +A +
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 171 DG 172
+G
Sbjct: 302 NG 303
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+YI +L + E ++F FGE+ + LV D+ + PRG G+V + A+KA
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKA 317
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%)
Query: 95 ASSPPRKASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGY 154
ASS + T S LY+ L +V E L E+F++ G V + + D G Y
Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125
Query: 155 VRFKTRADAEKA 166
V F D EKA
Sbjct: 126 VNFHNMEDGEKA 137
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I +L V++ L+ FS FG + +++ D +G G+V + T +A KA M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 171 DGFHRLQS----LLQLLQREIVRELIMSVLILRR 200
+ R+ + + L QR+ VR + I R
Sbjct: 425 N--QRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKT 159
N++ +++ LS NV++ L + F +G +V ++MD +G GYV F+T
Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 72 PQRNKSPAVAARRGRSPAPPSKRASSPPRKASTEND---SLVLYIDSLSRNVNEGHLREI 128
PQ+ K AV+ +S P + P AS +N S L++ +L NV + +++
Sbjct: 412 PQK-KETAVSVGSNKSATKPGQEEPKTP--ASNQNQATGSKTLFVGNLPYNVEQEQVKQF 468
Query: 129 FSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
F GEVVD+ N RG G+V F T A+KA
Sbjct: 469 FQEAGEVVDIRFSTFEDGNF-RGFGHVEFATAEAAKKA 505
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
S L+ +LS N+ + F GEVVDV +R RG G+V F + +A+KA
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
L+I +L + LR IF FGE+VD+++ + VN ++++ A KA
Sbjct: 440 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI---KKVNGVPQYAFLQYCDIASVCKAIKK 496
Query: 170 MDGFHRLQSLLQL 182
MDG + + L+L
Sbjct: 497 MDGEYLGNNRLKL 509
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
L+I +L + LR IF FGE+VD+++ + VN ++++ A KA
Sbjct: 439 TLFIGNLEKTTTYHDLRNIFQRFGEIVDIDI---KKVNGVPQYAFLQYCDIASVCKAIKK 495
Query: 170 MDGFHRLQSLLQL 182
MDG + + L+L
Sbjct: 496 MDGEYLGNNRLKL 508
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S +Y+ +L ++ E + ++FS +G VV ++L + P G +V F DAE A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAI 62
Query: 168 LYMDGF----HRLQSLL 180
DG+ HRL+ L
Sbjct: 63 HGRDGYDFDGHRLRVEL 79
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+YI LS NV E ++ FS +G +++V +L G G+V F+ DA+ A +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEV--------DLKNGYGFVEFEDSRDADDAVYEL 55
Query: 171 DG 172
+G
Sbjct: 56 NG 57
>sp|P19018|TRA2_DROME Transformer-2 sex-determining protein OS=Drosophila melanogaster
GN=tra2 PE=1 SV=1
Length = 264
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 34/60 (56%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S + + L+ N ++ +RE+F+ +G + +++V+D RG ++ F+ +DA A+
Sbjct: 96 SRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAK 155
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+YI LS NV E ++ FS +G ++ ++L G G+V F+ DA+ A +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLL--------GIDLKNGYGFVEFEDSRDADDAVYEL 55
Query: 171 DG 172
+G
Sbjct: 56 NG 57
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L + ++ N+ + ++ IF FG++ V L D N +G GY++++ A A M
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQ-NRSKGFGYIQYRNPISARNALEKM 400
Query: 171 DGF 173
+GF
Sbjct: 401 NGF 403
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+YI L+ V+E + F +G++ DV L G G+V F + DAE A +
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVL--------LKNGFGFVEFDDKRDAEDAVHDL 56
Query: 171 DG 172
+G
Sbjct: 57 NG 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,932,065
Number of Sequences: 539616
Number of extensions: 6400582
Number of successful extensions: 66640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 1141
Number of HSP's that attempted gapping in prelim test: 39179
Number of HSP's gapped (non-prelim): 14698
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)