Query 016658
Match_columns 385
No_of_seqs 423 out of 2741
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 99.9 6E-22 1.3E-26 202.9 18.1 127 104-263 85-211 (457)
2 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.9E-18 6.3E-23 177.9 17.5 76 105-187 172-259 (509)
3 TIGR01622 SF-CC1 splicing fact 99.8 4E-18 8.6E-23 174.7 16.2 81 108-188 186-266 (457)
4 TIGR01645 half-pint poly-U bin 99.8 1.7E-17 3.6E-22 173.1 18.1 79 106-184 105-183 (612)
5 TIGR01659 sex-lethal sex-letha 99.7 1E-17 2.2E-22 165.8 11.7 116 103-262 102-217 (346)
6 PLN03134 glycine-rich RNA-bind 99.7 2.9E-17 6.3E-22 143.2 11.2 84 105-188 31-114 (144)
7 KOG0105 Alternative splicing f 99.7 3E-17 6.5E-22 144.3 10.6 141 106-270 4-145 (241)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.4E-17 1.2E-21 160.5 12.0 111 108-262 3-113 (352)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.3E-15 2.7E-20 150.8 10.4 83 106-188 267-349 (352)
10 PF00076 RRM_1: RNA recognitio 99.6 3.3E-15 7.2E-20 112.5 9.2 70 111-181 1-70 (70)
11 KOG0124 Polypyrimidine tract-b 99.6 7.6E-15 1.6E-19 140.7 10.9 80 108-187 113-192 (544)
12 KOG0132 RNA polymerase II C-te 99.6 1.3E-14 2.9E-19 150.0 13.3 79 105-189 418-496 (894)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.9E-14 1.5E-18 145.2 18.5 81 108-188 295-375 (509)
14 KOG0121 Nuclear cap-binding pr 99.6 3.3E-15 7.2E-20 124.3 6.5 84 104-187 32-115 (153)
15 KOG0149 Predicted RNA-binding 99.5 9.1E-15 2E-19 133.3 6.9 81 106-187 10-90 (247)
16 TIGR01628 PABP-1234 polyadenyl 99.5 3.9E-14 8.3E-19 149.2 12.6 111 110-262 2-112 (562)
17 PF14259 RRM_6: RNA recognitio 99.5 6.4E-14 1.4E-18 106.3 9.4 70 111-181 1-70 (70)
18 TIGR01659 sex-lethal sex-letha 99.5 5E-14 1.1E-18 139.5 10.4 84 107-190 192-277 (346)
19 KOG4207 Predicted splicing fac 99.5 2.3E-14 5E-19 128.2 6.4 85 104-188 9-93 (256)
20 KOG0107 Alternative splicing f 99.5 3.5E-14 7.6E-19 124.1 7.3 77 107-188 9-85 (195)
21 PLN03213 repressor of silencin 99.5 9.4E-14 2E-18 137.6 10.6 83 105-191 7-91 (759)
22 TIGR01648 hnRNP-R-Q heterogene 99.5 1.3E-13 2.8E-18 143.8 12.2 78 105-183 55-133 (578)
23 KOG0147 Transcriptional coacti 99.5 1E-13 2.2E-18 139.4 10.5 82 109-190 279-360 (549)
24 KOG0122 Translation initiation 99.5 8.4E-14 1.8E-18 127.5 8.5 82 106-187 187-268 (270)
25 KOG0126 Predicted RNA-binding 99.5 8.7E-15 1.9E-19 128.6 1.6 84 105-188 32-115 (219)
26 PLN03120 nucleic acid binding 99.5 1.9E-13 4.1E-18 128.4 9.7 77 108-188 4-80 (260)
27 KOG0125 Ataxin 2-binding prote 99.5 1.9E-13 4E-18 129.8 9.1 82 105-188 93-174 (376)
28 TIGR01645 half-pint poly-U bin 99.5 2.3E-13 5E-18 142.3 10.6 81 107-187 203-283 (612)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5.6E-13 1.2E-17 138.0 13.2 79 105-188 272-351 (481)
30 KOG0113 U1 small nuclear ribon 99.4 3.8E-13 8.3E-18 126.3 10.0 95 106-203 99-193 (335)
31 KOG0147 Transcriptional coacti 99.4 2.1E-13 4.6E-18 137.0 8.8 88 102-190 173-260 (549)
32 KOG0131 Splicing factor 3b, su 99.4 1.5E-13 3.2E-18 120.9 6.3 115 105-262 6-120 (203)
33 KOG0117 Heterogeneous nuclear 99.4 1E-12 2.3E-17 129.1 11.6 88 100-187 75-163 (506)
34 smart00362 RRM_2 RNA recogniti 99.4 1.1E-12 2.4E-17 97.6 9.2 72 110-183 1-72 (72)
35 PLN03121 nucleic acid binding 99.4 8E-13 1.7E-17 122.4 9.9 79 106-188 3-81 (243)
36 KOG0145 RNA-binding protein EL 99.4 9.5E-13 2E-17 121.5 10.1 114 105-262 38-151 (360)
37 KOG0151 Predicted splicing reg 99.4 8.9E-13 1.9E-17 135.4 10.0 178 103-352 169-350 (877)
38 smart00360 RRM RNA recognition 99.4 1.6E-12 3.4E-17 96.3 8.6 71 113-183 1-71 (71)
39 KOG0130 RNA-binding protein RB 99.4 4.3E-13 9.3E-18 112.7 6.1 84 105-188 69-152 (170)
40 KOG0148 Apoptosis-promoting RN 99.4 1.6E-12 3.5E-17 120.7 10.5 84 105-188 59-142 (321)
41 KOG0114 Predicted RNA-binding 99.4 3.5E-12 7.6E-17 102.6 10.6 84 104-190 14-97 (124)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.2E-12 6.9E-17 132.4 13.3 117 108-262 2-120 (481)
43 TIGR01628 PABP-1234 polyadenyl 99.4 1.6E-12 3.5E-17 136.9 11.1 85 106-191 283-367 (562)
44 COG0724 RNA-binding proteins ( 99.4 1.9E-12 4.2E-17 120.2 9.6 80 108-187 115-194 (306)
45 KOG0111 Cyclophilin-type pepti 99.3 4.6E-13 9.9E-18 120.9 3.8 86 105-190 7-92 (298)
46 KOG0108 mRNA cleavage and poly 99.3 2E-12 4.4E-17 130.3 8.3 87 109-195 19-105 (435)
47 cd00590 RRM RRM (RNA recogniti 99.3 1.4E-11 3.1E-16 92.0 9.7 74 110-184 1-74 (74)
48 KOG0148 Apoptosis-promoting RN 99.3 9.1E-12 2E-16 115.7 8.9 81 103-189 159-239 (321)
49 KOG0144 RNA-binding protein CU 99.3 8E-12 1.7E-16 122.5 8.3 92 101-192 27-121 (510)
50 KOG4212 RNA-binding protein hn 99.3 3.2E-11 7E-16 118.3 11.2 82 107-189 43-125 (608)
51 KOG0127 Nucleolar protein fibr 99.2 2.3E-11 4.9E-16 122.3 9.6 90 102-191 286-381 (678)
52 KOG0144 RNA-binding protein CU 99.2 4.6E-12 9.9E-17 124.1 4.5 85 106-191 122-209 (510)
53 KOG0109 RNA-binding protein LA 99.2 1.2E-11 2.5E-16 116.0 6.0 72 109-188 3-74 (346)
54 smart00361 RRM_1 RNA recogniti 99.2 5E-11 1.1E-15 91.0 8.2 61 122-182 2-69 (70)
55 KOG0145 RNA-binding protein EL 99.2 4.1E-11 8.8E-16 110.8 9.1 81 107-187 277-357 (360)
56 TIGR01648 hnRNP-R-Q heterogene 99.2 5.6E-11 1.2E-15 124.2 10.1 74 107-188 232-307 (578)
57 KOG0106 Alternative splicing f 99.2 2.3E-11 4.9E-16 111.6 6.2 122 109-262 2-123 (216)
58 PF13893 RRM_5: RNA recognitio 99.1 2.5E-10 5.5E-15 82.9 8.7 56 125-185 1-56 (56)
59 KOG0127 Nucleolar protein fibr 99.1 1E-10 2.3E-15 117.6 8.1 83 107-190 116-198 (678)
60 KOG0117 Heterogeneous nuclear 99.1 2E-10 4.3E-15 113.3 8.8 79 106-192 257-335 (506)
61 KOG0146 RNA-binding protein ET 99.1 7.1E-11 1.5E-15 109.6 4.5 85 103-187 280-364 (371)
62 KOG0415 Predicted peptidyl pro 99.1 2.8E-10 6.2E-15 109.2 7.3 87 104-190 235-321 (479)
63 KOG4205 RNA-binding protein mu 99.0 4.1E-10 8.8E-15 109.3 6.2 118 107-263 5-122 (311)
64 KOG4208 Nucleolar RNA-binding 99.0 9.7E-10 2.1E-14 98.9 8.0 86 103-188 44-130 (214)
65 KOG0131 Splicing factor 3b, su 99.0 4.5E-10 9.8E-15 99.1 5.5 85 104-188 92-177 (203)
66 KOG4206 Spliceosomal protein s 99.0 6.9E-09 1.5E-13 94.8 11.8 84 106-192 7-94 (221)
67 KOG0123 Polyadenylate-binding 98.9 2.9E-09 6.2E-14 106.4 8.5 77 111-190 79-155 (369)
68 KOG4661 Hsp27-ERE-TATA-binding 98.9 7E-09 1.5E-13 104.8 9.8 82 107-188 404-485 (940)
69 KOG0109 RNA-binding protein LA 98.9 2.3E-09 4.9E-14 100.9 5.6 74 106-187 76-149 (346)
70 KOG0146 RNA-binding protein ET 98.8 1E-08 2.2E-13 95.5 7.7 84 107-191 18-104 (371)
71 KOG0123 Polyadenylate-binding 98.8 1.1E-08 2.5E-13 102.2 8.5 74 109-188 2-75 (369)
72 KOG0533 RRM motif-containing p 98.8 1.2E-08 2.6E-13 95.7 8.0 86 104-190 79-164 (243)
73 KOG4212 RNA-binding protein hn 98.8 7.2E-09 1.6E-13 102.0 6.3 77 104-185 532-608 (608)
74 KOG0153 Predicted RNA-binding 98.8 2.2E-08 4.7E-13 96.4 7.9 79 103-187 223-302 (377)
75 KOG0110 RNA-binding protein (R 98.7 2.2E-08 4.8E-13 103.9 8.3 80 107-186 514-596 (725)
76 KOG0124 Polypyrimidine tract-b 98.7 1.5E-08 3.2E-13 97.8 6.4 81 107-187 209-289 (544)
77 KOG0110 RNA-binding protein (R 98.7 1E-08 2.2E-13 106.3 4.5 85 106-190 611-695 (725)
78 KOG4209 Splicing factor RNPS1, 98.7 2.1E-08 4.5E-13 94.0 6.1 85 103-188 96-180 (231)
79 KOG4205 RNA-binding protein mu 98.6 3.2E-08 7E-13 96.2 5.6 83 107-190 96-178 (311)
80 KOG1548 Transcription elongati 98.6 2.1E-07 4.6E-12 89.6 9.6 83 105-188 131-221 (382)
81 KOG4454 RNA binding protein (R 98.6 2.3E-08 4.9E-13 90.8 2.6 82 105-188 6-87 (267)
82 KOG0226 RNA-binding proteins [ 98.5 8.2E-08 1.8E-12 89.0 4.2 79 106-184 188-266 (290)
83 KOG0116 RasGAP SH3 binding pro 98.5 3E-07 6.5E-12 92.7 8.4 83 106-189 286-368 (419)
84 PF04059 RRM_2: RNA recognitio 98.4 1.6E-06 3.5E-11 70.3 9.4 82 109-190 2-89 (97)
85 KOG4211 Splicing factor hnRNP- 98.4 1.9E-06 4.2E-11 86.5 11.8 121 106-264 8-129 (510)
86 KOG1457 RNA binding protein (c 98.3 1.5E-06 3.2E-11 79.4 7.7 85 106-190 32-120 (284)
87 KOG1190 Polypyrimidine tract-b 98.3 5.4E-06 1.2E-10 81.6 10.6 137 108-262 297-438 (492)
88 KOG1995 Conserved Zn-finger pr 98.2 9.3E-07 2E-11 85.8 3.9 85 105-189 63-155 (351)
89 KOG4660 Protein Mei2, essentia 98.2 1.2E-06 2.7E-11 89.1 4.3 72 105-181 72-143 (549)
90 KOG0120 Splicing factor U2AF, 98.2 1.6E-06 3.5E-11 88.7 4.7 84 107-190 288-371 (500)
91 KOG0120 Splicing factor U2AF, 98.1 1.3E-05 2.9E-10 82.1 9.1 78 105-189 172-261 (500)
92 KOG4368 Predicted RNA binding 98.1 7.1E-06 1.5E-10 83.7 6.7 10 192-201 743-752 (757)
93 KOG4849 mRNA cleavage factor I 98.0 1.7E-05 3.6E-10 76.7 7.7 83 108-190 80-164 (498)
94 KOG4368 Predicted RNA binding 97.9 2.1E-05 4.5E-10 80.4 6.5 7 150-156 728-734 (757)
95 PF11608 Limkain-b1: Limkain b 97.8 7E-05 1.5E-09 58.6 6.0 72 109-190 3-79 (90)
96 KOG0106 Alternative splicing f 97.7 1.7E-05 3.6E-10 73.2 2.8 74 103-184 94-167 (216)
97 KOG1457 RNA binding protein (c 97.7 3.1E-05 6.7E-10 70.9 4.1 66 106-175 208-273 (284)
98 KOG2314 Translation initiation 97.6 0.00013 2.8E-09 74.6 7.4 82 106-188 56-144 (698)
99 PF08777 RRM_3: RNA binding mo 97.6 0.00011 2.3E-09 60.8 5.4 73 109-187 2-79 (105)
100 KOG1365 RNA-binding protein Fu 97.5 0.0009 2E-08 65.8 11.7 86 104-190 276-364 (508)
101 COG5175 MOT2 Transcriptional r 97.5 0.00021 4.6E-09 69.0 6.8 82 108-189 114-204 (480)
102 KOG4206 Spliceosomal protein s 97.5 0.00031 6.6E-09 64.6 7.2 80 102-186 140-220 (221)
103 KOG4211 Splicing factor hnRNP- 97.5 0.00023 5E-09 71.9 6.9 82 107-190 102-184 (510)
104 KOG4210 Nuclear localization s 97.4 8.8E-05 1.9E-09 71.8 2.6 82 106-188 182-264 (285)
105 KOG1365 RNA-binding protein Fu 97.4 0.00049 1.1E-08 67.6 7.5 75 108-184 161-239 (508)
106 KOG4307 RNA binding protein RB 97.1 0.0011 2.5E-08 69.3 7.4 75 108-183 867-942 (944)
107 KOG0105 Alternative splicing f 97.1 0.0034 7.4E-08 56.2 8.8 63 107-176 114-176 (241)
108 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0015 3.2E-08 47.1 4.5 52 109-167 2-53 (53)
109 KOG0129 Predicted RNA-binding 96.9 0.0027 5.8E-08 64.8 7.2 66 104-170 255-326 (520)
110 KOG1855 Predicted RNA-binding 96.7 0.0013 2.9E-08 65.5 3.9 70 103-172 226-308 (484)
111 KOG0129 Predicted RNA-binding 96.7 0.0032 6.9E-08 64.2 6.5 66 104-169 366-432 (520)
112 KOG1456 Heterogeneous nuclear 96.7 0.013 2.9E-07 57.6 10.3 81 104-189 283-364 (494)
113 KOG1190 Polypyrimidine tract-b 96.7 0.0016 3.4E-08 64.6 4.0 74 106-185 26-101 (492)
114 KOG3152 TBP-binding protein, a 96.6 0.0015 3.2E-08 61.2 2.8 72 107-178 73-156 (278)
115 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.018 4E-07 47.0 8.0 78 108-187 6-91 (100)
116 KOG2193 IGF-II mRNA-binding pr 96.3 0.0053 1.2E-07 61.2 5.0 79 109-193 2-81 (584)
117 KOG0112 Large RNA-binding prot 96.2 0.0032 6.9E-08 67.9 3.1 85 107-197 454-540 (975)
118 KOG0128 RNA-binding protein SA 96.2 0.00057 1.2E-08 73.1 -2.5 71 106-177 665-735 (881)
119 KOG1548 Transcription elongati 96.1 0.018 3.8E-07 56.3 7.5 78 106-187 263-351 (382)
120 PF08952 DUF1866: Domain of un 96.0 0.032 6.9E-07 48.5 7.8 75 105-188 24-107 (146)
121 KOG0128 RNA-binding protein SA 95.9 0.0029 6.3E-08 67.9 1.1 76 108-184 736-811 (881)
122 KOG1456 Heterogeneous nuclear 95.6 0.031 6.8E-07 55.1 6.8 71 115-190 129-201 (494)
123 KOG2416 Acinus (induces apopto 95.4 0.012 2.6E-07 61.0 3.2 79 106-190 442-524 (718)
124 KOG2202 U2 snRNP splicing fact 95.3 0.0072 1.6E-07 56.7 1.3 63 124-187 84-147 (260)
125 KOG4676 Splicing factor, argin 95.2 0.047 1E-06 54.2 6.6 76 109-185 8-86 (479)
126 KOG1996 mRNA splicing factor [ 94.7 0.088 1.9E-06 50.5 6.7 65 123-187 301-366 (378)
127 KOG4307 RNA binding protein RB 94.6 0.061 1.3E-06 56.9 5.9 84 103-187 429-513 (944)
128 KOG0115 RNA-binding protein p5 94.5 0.037 8.1E-07 52.0 3.6 74 109-183 32-109 (275)
129 PF08648 DUF1777: Protein of u 94.2 0.54 1.2E-05 42.3 10.5 8 152-159 133-140 (180)
130 KOG2068 MOT2 transcription fac 93.7 0.026 5.7E-07 55.0 1.1 80 108-188 77-163 (327)
131 PF10309 DUF2414: Protein of u 93.7 0.24 5.2E-06 36.8 5.9 55 108-170 5-62 (62)
132 KOG4660 Protein Mei2, essentia 93.4 0.19 4.2E-06 52.0 6.6 82 109-190 389-475 (549)
133 KOG0112 Large RNA-binding prot 92.9 0.027 5.9E-07 61.0 -0.3 72 107-179 371-442 (975)
134 PF03880 DbpA: DbpA RNA bindin 92.7 0.49 1.1E-05 36.2 6.6 60 117-185 10-74 (74)
135 PF07576 BRAP2: BRCA1-associat 92.3 1.3 2.8E-05 36.8 9.0 68 108-177 13-81 (110)
136 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.25 5.5E-06 44.5 4.8 72 106-177 5-82 (176)
137 KOG2135 Proteins containing th 91.0 0.12 2.6E-06 52.6 1.8 60 121-187 386-445 (526)
138 PF08675 RNA_bind: RNA binding 90.8 1.1 2.3E-05 35.4 6.6 55 109-172 10-64 (87)
139 PF04847 Calcipressin: Calcipr 90.6 0.77 1.7E-05 41.7 6.5 60 122-187 9-70 (184)
140 KOG2591 c-Mpl binding protein, 90.5 0.42 9E-06 49.6 5.2 69 106-181 173-245 (684)
141 PF15023 DUF4523: Protein of u 89.6 1.4 3.1E-05 38.2 6.9 72 105-184 83-158 (166)
142 KOG4210 Nuclear localization s 89.5 0.2 4.3E-06 48.7 1.9 76 106-181 86-161 (285)
143 KOG4285 Mitotic phosphoprotein 89.3 1.3 2.8E-05 42.9 7.0 71 109-187 198-269 (350)
144 KOG2253 U1 snRNP complex, subu 89.0 0.24 5.3E-06 52.3 2.2 74 103-185 35-108 (668)
145 KOG1847 mRNA splicing factor [ 88.6 0.59 1.3E-05 49.3 4.6 16 108-123 845-860 (878)
146 KOG4574 RNA-binding protein (c 87.8 0.31 6.7E-06 52.8 2.1 75 109-189 299-375 (1007)
147 KOG0132 RNA polymerase II C-te 86.3 1.2 2.6E-05 48.1 5.4 35 148-184 507-541 (894)
148 KOG0804 Cytoplasmic Zn-finger 81.2 3.8 8.2E-05 41.8 6.3 68 108-177 74-142 (493)
149 PF11767 SET_assoc: Histone ly 78.8 11 0.00023 28.4 6.6 55 119-182 11-65 (66)
150 PF10500 SR-25: Nuclear RNA-sp 76.5 5 0.00011 37.3 5.1 13 138-150 172-184 (225)
151 KOG2318 Uncharacterized conser 71.3 10 0.00022 40.0 6.3 74 105-178 171-296 (650)
152 KOG4454 RNA binding protein (R 68.8 1.3 2.8E-05 41.1 -0.6 74 107-181 79-156 (267)
153 KOG2812 Uncharacterized conser 66.3 20 0.00044 35.6 6.9 8 328-335 332-339 (426)
154 PF15440 THRAP3_BCLAF1: THRAP3 61.9 10 0.00022 41.1 4.5 16 358-373 469-484 (646)
155 KOG4410 5-formyltetrahydrofola 60.1 22 0.00048 34.3 5.8 48 108-161 330-378 (396)
156 KOG2193 IGF-II mRNA-binding pr 54.4 0.8 1.7E-05 46.2 -4.9 77 108-188 80-157 (584)
157 KOG4365 Uncharacterized conser 53.7 3.8 8.3E-05 41.6 -0.4 80 108-188 3-82 (572)
158 smart00596 PRE_C2HC PRE_C2HC d 52.9 16 0.00034 27.8 2.9 63 123-188 2-65 (69)
159 PF03468 XS: XS domain; Inter 49.8 32 0.0007 28.8 4.7 56 110-168 10-75 (116)
160 PF07530 PRE_C2HC: Associated 48.2 23 0.0005 26.7 3.2 63 123-188 2-65 (68)
161 COG0724 RNA-binding proteins ( 44.7 31 0.00067 31.1 4.2 65 104-168 221-285 (306)
162 KOG3263 Nucleic acid binding p 37.8 14 0.00031 32.9 0.7 6 153-158 151-156 (196)
163 KOG4483 Uncharacterized conser 36.2 90 0.002 31.7 6.0 54 108-168 391-445 (528)
164 KOG3869 Uncharacterized conser 33.4 32 0.00069 35.0 2.5 7 120-126 361-367 (450)
165 PF10567 Nab6_mRNP_bdg: RNA-re 33.4 81 0.0017 30.8 5.1 83 105-187 12-107 (309)
166 PF15513 DUF4651: Domain of un 31.6 82 0.0018 23.4 3.8 19 123-141 9-27 (62)
167 PLN03134 glycine-rich RNA-bind 30.9 31 0.00068 29.8 1.8 22 241-262 37-58 (144)
168 KOG2135 Proteins containing th 30.8 93 0.002 32.3 5.3 46 118-170 207-252 (526)
169 KOG2891 Surface glycoprotein [ 29.3 48 0.001 32.0 2.8 70 106-175 147-247 (445)
170 COG5638 Uncharacterized conser 28.0 1.1E+02 0.0023 31.3 5.1 37 105-141 143-184 (622)
171 PF09707 Cas_Cas2CT1978: CRISP 24.6 1.3E+02 0.0027 23.9 4.0 49 107-158 24-72 (86)
172 KOG1295 Nonsense-mediated deca 22.9 89 0.0019 31.5 3.5 69 108-176 7-78 (376)
173 KOG4019 Calcineurin-mediated s 22.7 56 0.0012 29.6 1.8 74 109-188 11-90 (193)
174 KOG2295 C2H2 Zn-finger protein 22.6 21 0.00045 37.6 -1.0 70 108-177 231-300 (648)
175 COG3860 Uncharacterized protei 20.8 52 0.0011 25.9 1.1 46 340-385 36-89 (89)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=6e-22 Score=202.87 Aligned_cols=127 Identities=23% Similarity=0.311 Sum_probs=99.9
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.....++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||. |+|..|.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 45567899999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred eehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccC
Q 016658 184 QREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLR 263 (385)
Q Consensus 184 ~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~ 263 (385)
........... .. .... ... | ... .+.+.|||..+++++|+++|.+..
T Consensus 164 ~~~~~~~~~~~------~~-----~~~~-~~~-p---------------~~~----~l~v~nl~~~~te~~l~~~f~~~G 211 (457)
T TIGR01622 164 SSQAEKNRAAK------AA-----THQP-GDI-P---------------NFL----KLYVGNLHFNITEQELRQIFEPFG 211 (457)
T ss_pred ecchhhhhhhh------cc-----cccC-CCC-C---------------CCC----EEEEcCCCCCCCHHHHHHHHHhcC
Confidence 76543221110 00 0000 000 0 012 234479999999999999998753
No 2
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.78 E-value=2.9e-18 Score=177.91 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=63.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccC------------CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNF------------GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~------------G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng 172 (385)
....++|||||||+.+|+++|+++|.+| +.|..+.+ ++.+|||||+|.+.++|+.||+ |||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3457899999999999999999999975 23444443 4568999999999999999995 999
Q ss_pred CeeCCeEeEEEeehh
Q 016658 173 FHRLQSLLQLLQREI 187 (385)
Q Consensus 173 ~~l~Gr~I~V~~a~~ 187 (385)
..|.|+.|+|..+..
T Consensus 245 ~~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 245 IIYSNVFLKIRRPHD 259 (509)
T ss_pred eEeeCceeEecCccc
Confidence 999999999976554
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.77 E-value=4e-18 Score=174.68 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=77.8
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+.+|+++|+++|++||.|..|.|+.+..+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=1.7e-17 Score=173.10 Aligned_cols=79 Identities=20% Similarity=0.305 Sum_probs=75.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
...++||||||++.+++++|+++|.+||.|.+|.|+.++.||+++|||||+|.+.++|+.||+.|||..|+|+.|+|..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1e-17 Score=165.76 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=99.9
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
......++|||+|||+++||++|+++|+.||.|++|+|+.++.|++++|||||+|.+.++|++||+.|||..|.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 183 LQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 183 ~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+++.... .. ... .|.+.|||..++|.+|+++|.+.
T Consensus 182 ~~a~p~~~---------------------------------------~~-~~~----~lfV~nLp~~vtee~L~~~F~~f 217 (346)
T TIGR01659 182 SYARPGGE---------------------------------------SI-KDT----NLYVTNLPRTITDDQLDTIFGKY 217 (346)
T ss_pred eccccccc---------------------------------------cc-ccc----eeEEeCCCCcccHHHHHHHHHhc
Confidence 87653210 00 011 23447999999999999999865
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=2.9e-17 Score=143.23 Aligned_cols=84 Identities=30% Similarity=0.448 Sum_probs=79.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+||++++||++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8764
No 7
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3e-17 Score=144.29 Aligned_cols=141 Identities=21% Similarity=0.305 Sum_probs=100.0
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||||||.++.+.+|+++|.+||.|.+|.|...+ ..-+||||+|++..+|+.||..-+|..++|..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999985332 35679999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCCCCCCCC-CCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccCC
Q 016658 186 EIVRELIMSVLILRRMGQNDQENPLPVGSHP-PRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLRG 264 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~p-p~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~~ 264 (385)
...+.. ..+..+-...+... +..+... -...+-...+++ ++||.+-+||||||+||..
T Consensus 81 rggr~s-----------~~~~G~y~gggrgGgg~gg~rg----ppsrrSe~RVvV----sGLp~SgSWQDLKDHmRea-- 139 (241)
T KOG0105|consen 81 RGGRSS-----------SDRRGSYSGGGRGGGGGGGRRG----PPSRRSEYRVVV----SGLPPSGSWQDLKDHMREA-- 139 (241)
T ss_pred cCCCcc-----------cccccccCCCCCCCCCCCcccC----CcccccceeEEE----ecCCCCCchHHHHHHHHhh--
Confidence 876431 11111111111110 1111110 011222333444 7999999999999999965
Q ss_pred CCceee
Q 016658 265 GDLLLH 270 (385)
Q Consensus 265 ~~~~~~ 270 (385)
|++|+.
T Consensus 140 GdvCfa 145 (241)
T KOG0105|consen 140 GDVCFA 145 (241)
T ss_pred CCeeee
Confidence 455543
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=5.4e-17 Score=160.53 Aligned_cols=111 Identities=21% Similarity=0.350 Sum_probs=97.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+.+||++|+++|++||+|.+|.|+.++.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|.+++.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 188 VRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 188 ~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
... . .... .+.+.+||..++|++|.++|.+.
T Consensus 83 ~~~--------------------~--------------------~~~~----~l~v~~l~~~~~~~~l~~~f~~~ 113 (352)
T TIGR01661 83 SSD--------------------S--------------------IKGA----NLYVSGLPKTMTQHELESIFSPF 113 (352)
T ss_pred ccc--------------------c--------------------cccc----eEEECCccccCCHHHHHHHHhcc
Confidence 211 0 0011 23447999999999999999986
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=1.3e-15 Score=150.78 Aligned_cols=83 Identities=24% Similarity=0.421 Sum_probs=78.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..+.+|||+|||+.+++++|.++|++||.|..|+|+.+..||.++|||||+|.+.++|.+||+.|||..|+|+.|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 654
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=3.3e-15 Score=112.49 Aligned_cols=70 Identities=29% Similarity=0.549 Sum_probs=66.9
Q ss_pred eeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 111 vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5689999999999999999999999999999999885
No 11
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=7.6e-15 Score=140.66 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=76.8
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
-|+||||.+.+...|+.|+..|..||+|+++.+-.|+.|+++||||||||+-+|.|+.|++.|||..+.||.|+|..+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999986554
No 12
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.58 E-value=1.3e-14 Score=150.03 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=72.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
.-.++|||||+|+..++|.||..+|+.||+|.+|.++ .++|||||.+....+|++|+.+|+...+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 4568999999999999999999999999999999986 3678999999999999999999999999999999999
Q ss_pred ehhhH
Q 016658 185 REIVR 189 (385)
Q Consensus 185 a~~~~ 189 (385)
+...-
T Consensus 492 a~g~G 496 (894)
T KOG0132|consen 492 AVGKG 496 (894)
T ss_pred eccCC
Confidence 86643
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=6.9e-14 Score=145.23 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=77.2
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+.+|+++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|+.||+.|||..|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 375 ~ 375 (509)
T TIGR01642 375 G 375 (509)
T ss_pred C
Confidence 3
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.3e-15 Score=124.28 Aligned_cols=84 Identities=25% Similarity=0.366 Sum_probs=79.4
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
....+++||||||++.+||+.|.++|+++|+|..|.|-.|+.+..+.|||||+|.+.++|+.||..++|..|+.+.|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eehh
Q 016658 184 QREI 187 (385)
Q Consensus 184 ~a~~ 187 (385)
+.-.
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 7544
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=9.1e-15 Score=133.34 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..-++||||||+|.++.+.|+++|++||+|++..++.|+.||++||||||+|.+.++|++|++. -.-.|+||+..+..|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3468999999999999999999999999999999999999999999999999999999999984 456789998777655
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 43
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=3.9e-14 Score=149.17 Aligned_cols=111 Identities=25% Similarity=0.323 Sum_probs=95.0
Q ss_pred eeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhhH
Q 016658 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIVR 189 (385)
Q Consensus 110 ~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~~ 189 (385)
+|||+|||.++||++|+++|++||.|.+|+|+.|..|++++|||||+|.+.++|++|++.||+..|.|+.|+|.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 190 ELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 190 ~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.. .. . ... .|.+.|||..+++.+|+++|...
T Consensus 82 ~~------------------~~-------~-------------~~~----~vfV~nLp~~~~~~~L~~~F~~~ 112 (562)
T TIGR01628 82 SL------------------RR-------S-------------GVG----NIFVKNLDKSVDNKALFDTFSKF 112 (562)
T ss_pred cc------------------cc-------c-------------CCC----ceEEcCCCccCCHHHHHHHHHhc
Confidence 10 00 0 001 23447999999999999999875
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=6.4e-14 Score=106.28 Aligned_cols=70 Identities=31% Similarity=0.534 Sum_probs=65.2
Q ss_pred eeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 111 vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
|||+|||+++++++|.++|..||.|..+.+..+++ +..+|+|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999887 89999999999999999999999999999999875
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.51 E-value=5e-14 Score=139.48 Aligned_cols=84 Identities=25% Similarity=0.477 Sum_probs=78.4
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ--SLLQLLQ 184 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V~~ 184 (385)
..++|||+|||+.+||++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..+.| +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999976 6899998
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
+++..+
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 887544
No 19
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=2.3e-14 Score=128.20 Aligned_cols=85 Identities=29% Similarity=0.368 Sum_probs=79.9
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.......|-|-||.+.++.++|..+|++||.|-+|.|..|+.|+.++|||||-|.+..+|+.|+++|+|..|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
.|+-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 87654
No 20
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.5e-14 Score=124.14 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=71.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
-.++||||||+..+++.||+.+|..||.|..|.|-.. +.|||||||+++.+|+.|+..|+|..|+|..|.|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999998753 57899999999999999999999999999999999877
Q ss_pred hh
Q 016658 187 IV 188 (385)
Q Consensus 187 ~~ 188 (385)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 64
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=9.4e-14 Score=137.59 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=75.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCH--HHHHHHHHHhCCCeeCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTR--ADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~--e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.....+||||||++.+|+++|..+|..||.|..|.|+ +.|| ||||||+|.+. .++.+||+.|||..++|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3456899999999999999999999999999999999 4556 99999999987 7899999999999999999999
Q ss_pred EeehhhHHH
Q 016658 183 LQREIVREL 191 (385)
Q Consensus 183 ~~a~~~~~~ 191 (385)
..|+.....
T Consensus 83 NKAKP~YLe 91 (759)
T PLN03213 83 EKAKEHYLA 91 (759)
T ss_pred eeccHHHHH
Confidence 999987543
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.3e-13 Score=143.83 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=71.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-QSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-Gr~I~V~ 183 (385)
....++|||+|||++++|++|+++|++||.|.+|+|+.| .+|+++|||||+|.+.++|++||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345799999999999999999999999999999999999 78999999999999999999999999999885 6766654
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=1e-13 Score=139.36 Aligned_cols=82 Identities=29% Similarity=0.491 Sum_probs=76.8
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
..||||||.+.+|+++|+.+|+.||.|..|.+.+|..||.++|||||+|.+.++|.+|++.|||.+|-|+.|+|....+.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999877664
Q ss_pred HH
Q 016658 189 RE 190 (385)
Q Consensus 189 ~~ 190 (385)
-.
T Consensus 359 ~~ 360 (549)
T KOG0147|consen 359 VD 360 (549)
T ss_pred cc
Confidence 33
No 24
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=8.4e-14 Score=127.53 Aligned_cols=82 Identities=27% Similarity=0.486 Sum_probs=78.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|-|.||+.+++|++|.++|..||.|..|.|.+|+.||.+||||||.|.+.++|.+||+.|||.-++.-.|.|+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
+.
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=8.7e-15 Score=128.57 Aligned_cols=84 Identities=23% Similarity=0.426 Sum_probs=79.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
-.++.-|||||||+..||.||.-.|++||+|++|.+++|+.||+++||||+.|++..+.-.|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
....
T Consensus 112 v~~Y 115 (219)
T KOG0126|consen 112 VSNY 115 (219)
T ss_pred cccc
Confidence 5544
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=1.9e-13 Score=128.36 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=71.3
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+||++.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|+.||. |||..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998753 57999999999999999995 999999999999998765
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=129.83 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=76.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|+|+|||+...|.||+.+|++||.|.+|+|+.+. .-+||||||+|++.++|++|-++|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3456899999999999999999999999999999999876 46899999999999999999999999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8764
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.46 E-value=2.3e-13 Score=142.27 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=77.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+||++++++++|+++|+.||.|..|.|..++.+++++|||||+|.+.++|.+||+.|||..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred h
Q 016658 187 I 187 (385)
Q Consensus 187 ~ 187 (385)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=5.6e-13 Score=137.96 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=72.2
Q ss_pred CCCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..++++|||+||++ .+|+++|+++|+.||.|..|.|+.++ +|||||+|.+.++|+.||+.|||..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998763 6899999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87654
No 30
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.8e-13 Score=126.31 Aligned_cols=95 Identities=19% Similarity=0.333 Sum_probs=85.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+-++|||+-|+++++|..|+..|+.||.|+.|.|+.++.||+++|||||+|.++.+...|.+..+|.+|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hhhHHHHHHHHHHHhhCC
Q 016658 186 EIVRELIMSVLILRRMGQ 203 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~ 203 (385)
.. .....|+.++++.
T Consensus 179 Rg---RTvkgW~PRRLGG 193 (335)
T KOG0113|consen 179 RG---RTVKGWLPRRLGG 193 (335)
T ss_pred cc---ccccccccccccC
Confidence 44 3446677776653
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.44 E-value=2.1e-13 Score=137.04 Aligned_cols=88 Identities=25% Similarity=0.333 Sum_probs=79.3
Q ss_pred CccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 102 ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 102 ~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
..+....++||+--|+..+++.+|++||+.+|.|.+|.|+.|+.++.++|.|||+|.+.+.+..|| .|.|+.+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 345566899999999999999999999999999999999999999999999999999999999999 5999999999998
Q ss_pred EEeehhhHH
Q 016658 182 LLQREIVRE 190 (385)
Q Consensus 182 V~~a~~~~~ 190 (385)
|......+.
T Consensus 252 vq~sEaekn 260 (549)
T KOG0147|consen 252 VQLSEAEKN 260 (549)
T ss_pred ecccHHHHH
Confidence 886554433
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=1.5e-13 Score=120.93 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+..+||||||+..++++.|.++|-+.|+|..+.|+.|+.+...+||||+||.++|+|+-|++.||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+..... .+. +...+++.||...|+-.-|.|.|.+.
T Consensus 86 as~~~~---------------------------------------nl~----vganlfvgNLd~~vDe~~L~dtFsaf 120 (203)
T KOG0131|consen 86 ASAHQK---------------------------------------NLD----VGANLFVGNLDPEVDEKLLYDTFSAF 120 (203)
T ss_pred cccccc---------------------------------------ccc----ccccccccccCcchhHHHHHHHHHhc
Confidence 873211 000 11223457888889988899999876
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1e-12 Score=129.11 Aligned_cols=88 Identities=20% Similarity=0.357 Sum_probs=80.2
Q ss_pred CCCccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee-CCe
Q 016658 100 RKASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR-LQS 178 (385)
Q Consensus 100 r~~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l-~Gr 178 (385)
++..+...++.||||.||.++.|++|.-+|++.|+|-+++|++|+.+|.+||||||+|.+.++|++||+.||+++| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3444557799999999999999999999999999999999999999999999999999999999999999999998 688
Q ss_pred EeEEEeehh
Q 016658 179 LLQLLQREI 187 (385)
Q Consensus 179 ~I~V~~a~~ 187 (385)
.|.|.....
T Consensus 155 ~igvc~Sva 163 (506)
T KOG0117|consen 155 LLGVCVSVA 163 (506)
T ss_pred EeEEEEeee
Confidence 888876544
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.42 E-value=1.1e-12 Score=97.56 Aligned_cols=72 Identities=31% Similarity=0.515 Sum_probs=67.4
Q ss_pred eeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 110 ~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++|+|||+|.+.++|+.|++.++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6788999999999999999999999999999998873
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8e-13 Score=122.37 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=72.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..+.+|||+||++.+|+++|++||+.||.|.+|.|+.+. ..+|||||+|.++++|+.|+. |+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 356899999999999999999999999999999999884 456899999999999999995 9999999999999988
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 764
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=9.5e-13 Score=121.54 Aligned_cols=114 Identities=23% Similarity=0.397 Sum_probs=100.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....+.|.|.-||..+|+++|+.+|...|+|++|++++|+-+|++-||+||.|-++++|++|+..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
++..... .+ +..+++ ++||-+.+-++|.++|.+.
T Consensus 118 ARPSs~~---------------------------------------Ik-~aNLYv----SGlPktMtqkelE~iFs~f 151 (360)
T KOG0145|consen 118 ARPSSDS---------------------------------------IK-DANLYV----SGLPKTMTQKELEQIFSPF 151 (360)
T ss_pred ccCChhh---------------------------------------hc-ccceEE----ecCCccchHHHHHHHHHHh
Confidence 9875441 11 222444 7999999999999999983
No 37
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.40 E-value=8.9e-13 Score=135.43 Aligned_cols=178 Identities=24% Similarity=0.306 Sum_probs=133.6
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV---NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL 179 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t---g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~ 179 (385)
...+..+.+||+||+..++++.|-..|+.||+|..++|+..+.. ...+.||||.|-+..+|++|++.|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 34567899999999999999999999999999999999875432 456779999999999999999999999999999
Q ss_pred eEEEeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHh
Q 016658 180 LQLLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEV 259 (385)
Q Consensus 180 I~V~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~ 259 (385)
+++.|.+...- ++.+...+|+.++. .+.....||||.+.
T Consensus 249 ~K~gWgk~V~i-----------------p~~p~~ipp~~h~~----------------~lp~p~s~Lpfnaq-------- 287 (877)
T KOG0151|consen 249 MKLGWGKAVPI-----------------PNIPIYIPPPLHEA----------------TLPPPPSNLPFNAQ-------- 287 (877)
T ss_pred eeecccccccc-----------------CCccccCCChhhhc----------------cCCCCccCCcccCC--------
Confidence 99998876421 00111111111111 11122245666422
Q ss_pred cccCCCCceeecccCCCCccccCccccCCCCCcceeeecCCCeEEEeecccccCCCcchhhhcccccCCchhhhhh-chh
Q 016658 260 RPLRGGDLLLHLGVALPPLHLGGIDLLQGPLPEECVVVPSDGVLLFLQGAVRLPLDEPVLLLEGLHSVDALALQFA-GLC 338 (385)
Q Consensus 260 r~~~~~~~~~~~~~~~~~~h~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 338 (385)
.|| +..+||.+..++.++.+.+.++.=+..-+..|.||.++.+|. ++|
T Consensus 288 ---------------------------p~p----~~~~pn~N~e~~~~edv~~i~Vvip~d~~L~~vidrM~~fV~~egp 336 (877)
T KOG0151|consen 288 ---------------------------PGP----PKSLPNQNAELVNTEDVEDILVVIPTDRHLLMVIDRMAEFVVREGP 336 (877)
T ss_pred ---------------------------CCc----cccCCCccccccCcCCccceeEecCchHHHHHHHHHHHHHHhccCc
Confidence 111 457888888888887777777555555678999999999999 999
Q ss_pred HHHHHHhhcCCCCC
Q 016658 339 TLVQDLFHQGEGEG 352 (385)
Q Consensus 339 ~~~~~~~~~~~~~~ 352 (385)
.|+|.||..++|--
T Consensus 337 ~fea~im~re~~np 350 (877)
T KOG0151|consen 337 MFEAMIMERERGNP 350 (877)
T ss_pred cHHHHHHHhhccCh
Confidence 99999999998764
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=96.32 Aligned_cols=71 Identities=34% Similarity=0.535 Sum_probs=67.2
Q ss_pred eccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 113 IDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 113 VgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
|+|||..+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|..|++.|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888789999999999999999999999999999999998873
No 39
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=4.3e-13 Score=112.69 Aligned_cols=84 Identities=17% Similarity=0.354 Sum_probs=79.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
+-.+..|||.++...+||++|.+.|..||+|+.+.+..|+.||..||||+|+|++.++|++||..|||..|.|+.|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+-..
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7553
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.6e-12 Score=120.68 Aligned_cols=84 Identities=27% Similarity=0.448 Sum_probs=79.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
.....-|||+.|...++-++|++.|.+||+|.+++|++|.+|+++||||||.|.+.++|++||..|||+-|.+|.|+-.+
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+..+
T Consensus 139 ATRK 142 (321)
T KOG0148|consen 139 ATRK 142 (321)
T ss_pred cccC
Confidence 8765
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=102.63 Aligned_cols=84 Identities=19% Similarity=0.367 Sum_probs=75.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
+.....-|||.|||+.+|.++..++|++||.|..|+|-..+. .+|-|||.|++..+|.+|++.|+|..++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344578899999999999999999999999999999976654 68999999999999999999999999999999999
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
+......
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 8776554
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=3.2e-12 Score=132.35 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=90.7
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh--CCCeeCCeEeEEEee
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM--DGFHRLQSLLQLLQR 185 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l--ng~~l~Gr~I~V~~a 185 (385)
++.|||+|||+.+||++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.| ++..|.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 57899999999999999999999999999999874 3579999999999999999874 789999999999998
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 186 EIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
...... +.. + ... +. ....-+..|.+.||++.++|.+|+++|.+.
T Consensus 76 ~~~~~~--------~~~-----~-~~~------------~~------~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~ 120 (481)
T TIGR01649 76 TSQEIK--------RDG-----N-SDF------------DS------AGPNKVLRVIVENPMYPITLDVLYQIFNPY 120 (481)
T ss_pred CCcccc--------cCC-----C-Ccc------------cC------CCCCceEEEEEcCCCCCCCHHHHHHHHhcc
Confidence 653210 000 0 000 00 001123445668999999999999999874
No 43
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.38 E-value=1.6e-12 Score=136.91 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+||++.+|+++|+++|++||.|.+|.++.+ .+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999999 56999999999999999999999999999999999999998
Q ss_pred hhhHHH
Q 016658 186 EIVREL 191 (385)
Q Consensus 186 ~~~~~~ 191 (385)
..+...
T Consensus 362 ~~k~~~ 367 (562)
T TIGR01628 362 QRKEQR 367 (562)
T ss_pred cCcHHH
Confidence 876543
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=1.9e-12 Score=120.24 Aligned_cols=80 Identities=33% Similarity=0.487 Sum_probs=77.2
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+.+|+++|.++|.+||.|..+.+..++.++.++|||||+|.+.++|..|++.++|..|.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999998654
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-13 Score=120.91 Aligned_cols=86 Identities=24% Similarity=0.381 Sum_probs=81.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++||||+|...+||.-|...|=.||.|.+|.++.|..+++++|||||+|...|+|.+||..||+.+|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
|+..+-
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 877553
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.34 E-value=2e-12 Score=130.34 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=82.0
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
+.|||||+|++++|++|.++|+..|.|..++++.|+.||+++||||++|.+.++|+.|++.|||.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred HHHHHHH
Q 016658 189 RELIMSV 195 (385)
Q Consensus 189 ~~~~~~~ 195 (385)
.......
T Consensus 99 ~~~~~~~ 105 (435)
T KOG0108|consen 99 KNAERSL 105 (435)
T ss_pred chhHHHH
Confidence 6544443
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.4e-11 Score=92.02 Aligned_cols=74 Identities=34% Similarity=0.525 Sum_probs=68.7
Q ss_pred eeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 110 ~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
+|||+|||..+++++|+++|..||.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987764 7789999999999999999999999999999998863
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=9.1e-12 Score=115.75 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=75.0
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
...+++++|||||++..+||++|++.|+.||.|.+|++..+ +||+||.|.+.|.|..||..+|+.++.|..|++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 45677999999999999999999999999999999999866 579999999999999999999999999999999
Q ss_pred EeehhhH
Q 016658 183 LQREIVR 189 (385)
Q Consensus 183 ~~a~~~~ 189 (385)
.+-++.-
T Consensus 233 sWGKe~~ 239 (321)
T KOG0148|consen 233 SWGKEGD 239 (321)
T ss_pred eccccCC
Confidence 9987753
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8e-12 Score=122.46 Aligned_cols=92 Identities=23% Similarity=0.439 Sum_probs=81.6
Q ss_pred CCccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC-eeCCe-
Q 016658 101 KASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF-HRLQS- 178 (385)
Q Consensus 101 ~~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~-~l~Gr- 178 (385)
...++.+.-++|||-+|..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+|+.. .|-|.
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 3344566789999999999999999999999999999999999999999999999999999999999999875 45554
Q ss_pred -EeEEEeehhhHHHH
Q 016658 179 -LLQLLQREIVRELI 192 (385)
Q Consensus 179 -~I~V~~a~~~~~~~ 192 (385)
.|+|.++...+...
T Consensus 107 ~pvqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 107 HPVQVKYADGERERI 121 (510)
T ss_pred cceeecccchhhhcc
Confidence 89999988877654
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=3.2e-11 Score=118.31 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=75.0
Q ss_pred CcceeeeccCCcCCChhHHHHHhc-cCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFS-NFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~-~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..+.+||.|+|+++.|++|+++|. +.|+|..|.++.|.. |+++|||.|||.++|.+++|++.||.+.+.|+.|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 355699999999999999999994 689999999999975 999999999999999999999999999999999999986
Q ss_pred hhhH
Q 016658 186 EIVR 189 (385)
Q Consensus 186 ~~~~ 189 (385)
....
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 6643
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=122.25 Aligned_cols=90 Identities=26% Similarity=0.382 Sum_probs=80.5
Q ss_pred CccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-----CC-Cee
Q 016658 102 ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM-----DG-FHR 175 (385)
Q Consensus 102 ~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l-----ng-~~l 175 (385)
........+|||.|||+++|+++|+++|.+||+|..+.|+.++.|+.++|+|||.|.+..+|++||+.. .| ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 334556799999999999999999999999999999999999999999999999999999999999875 34 789
Q ss_pred CCeEeEEEeehhhHHH
Q 016658 176 LQSLLQLLQREIVREL 191 (385)
Q Consensus 176 ~Gr~I~V~~a~~~~~~ 191 (385)
+||.|+|..+-.....
T Consensus 366 ~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccEEeeeeccchHHH
Confidence 9999999988765543
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=4.6e-12 Score=124.13 Aligned_cols=85 Identities=27% Similarity=0.422 Sum_probs=76.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC-eeCC--eEeEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF-HRLQ--SLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~-~l~G--r~I~V 182 (385)
.+.++||||-|+..+||.+++++|.+||.|++|.|+++.. +.+||||||.|.+.|.|..||+.|||. .+.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4578999999999999999999999999999999999987 999999999999999999999999996 4445 58999
Q ss_pred EeehhhHHH
Q 016658 183 LQREIVREL 191 (385)
Q Consensus 183 ~~a~~~~~~ 191 (385)
.+|...+.+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 998766543
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.22 E-value=1.2e-11 Score=116.05 Aligned_cols=72 Identities=24% Similarity=0.490 Sum_probs=68.0
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
.+|||||||..+++.+|+.+|++||+|.+|+|+++ ||||..++...|+.||..|+|..|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999854 9999999999999999999999999999999977765
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=5e-11 Score=90.99 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=56.1
Q ss_pred hhHHHHHhc----cCCceEEEE-EeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 122 EGHLREIFS----NFGEVVDVE-LVMDRAV--NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 122 e~dL~~~F~----~~G~I~~v~-i~~d~~t--g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
+++|+++|. +||.|..+. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7777777 899999999999999999999999999999999986
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=4.1e-11 Score=110.85 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=77.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
.+..|||-||..+++|.-|.++|..||.|..|++++|..|.+.||||||.+.+.++|..||..|||..+.++.|+|.+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred h
Q 016658 187 I 187 (385)
Q Consensus 187 ~ 187 (385)
.
T Consensus 357 n 357 (360)
T KOG0145|consen 357 N 357 (360)
T ss_pred C
Confidence 4
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.20 E-value=5.6e-11 Score=124.24 Aligned_cols=74 Identities=28% Similarity=0.405 Sum_probs=68.7
Q ss_pred CcceeeeccCCcCCChhHHHHHhccC--CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNF--GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~--G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
...+|||+||++.+|+++|+++|++| |.|..|.++ ++||||+|.+.++|++||+.|||.+|+|+.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999999775 45999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 8764
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=2.3e-11 Score=111.61 Aligned_cols=122 Identities=21% Similarity=0.312 Sum_probs=90.9
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
..||||+||+.+.+.+|..||..||.|.++.+. .||+||+|.+.-+|..|+..||+.+|.|..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999884 469999999999999999999999999999888888764
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 189 RELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 189 ~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.... +.++......+.....+.....+.+++ .++...++||||+|+|++.
T Consensus 74 ~~~~--------------------g~~~~g~r~~~~~~~~~p~~s~~r~~~----~~~~~r~~~qdl~d~~~~~ 123 (216)
T KOG0106|consen 74 RRGR--------------------GRPRGGDRRSDSRRYRPPSRTHFRLIV----RNLSLRVSWQDLKDHFRPA 123 (216)
T ss_pred cccc--------------------CCCCCCCccchhhccCCcccccceeee----ccchhhhhHHHHhhhhccc
Confidence 3300 000000000111222222334444444 5899999999999999965
No 58
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=2.5e-10 Score=82.95 Aligned_cols=56 Identities=30% Similarity=0.473 Sum_probs=50.2
Q ss_pred HHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 125 LREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 125 L~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
|.++|++||.|..+.+..+. +++|||+|.+.++|+.|++.|||..+.|+.|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999986443 589999999999999999999999999999999875
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1e-10 Score=117.57 Aligned_cols=83 Identities=25% Similarity=0.333 Sum_probs=76.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+-.+|+|.||||.+.+.+|+.+|+.||.|.+|.|+.... |+-+|||||.|....+|..||+.+||.+|+||+|.|.||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 378899999999999999999999999999999997766 6666999999999999999999999999999999999986
Q ss_pred hhHH
Q 016658 187 IVRE 190 (385)
Q Consensus 187 ~~~~ 190 (385)
.+..
T Consensus 195 ~Kd~ 198 (678)
T KOG0127|consen 195 DKDT 198 (678)
T ss_pred cccc
Confidence 6543
No 60
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=2e-10 Score=113.27 Aligned_cols=79 Identities=28% Similarity=0.367 Sum_probs=72.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..-..|||.||+..+||+.|+++|++||.|..|..++| ||||.|.+.++|-+||+.+||++|+|..|.|..|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34577999999999999999999999999999988755 9999999999999999999999999999999999
Q ss_pred hhhHHHH
Q 016658 186 EIVRELI 192 (385)
Q Consensus 186 ~~~~~~~ 192 (385)
+...+..
T Consensus 329 KP~~k~k 335 (506)
T KOG0117|consen 329 KPVDKKK 335 (506)
T ss_pred CChhhhc
Confidence 8876544
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=7.1e-11 Score=109.61 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=78.8
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
...+++|.|||-.||.+..+.+|.++|..||.|++.++..|+.|+.+|+||||.|+++.+|++||..|||..|.-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred Eeehh
Q 016658 183 LQREI 187 (385)
Q Consensus 183 ~~a~~ 187 (385)
...+.
T Consensus 360 QLKRP 364 (371)
T KOG0146|consen 360 QLKRP 364 (371)
T ss_pred hhcCc
Confidence 75443
No 62
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.8e-10 Score=109.23 Aligned_cols=87 Identities=22% Similarity=0.341 Sum_probs=81.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..++.+.|||..|.+-+|.+||.-+|+.||.|..|.++.|..||.+-.||||||++.+++++|.-.|++..|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
+.....+
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 8776554
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.01 E-value=4.1e-10 Score=109.34 Aligned_cols=118 Identities=23% Similarity=0.233 Sum_probs=96.6
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+.++||||+|+|+++++.|++.|.+||+|.+|.++.|+.+++++||+||+|++.+.+.++|. ..-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999999886 45678999998877665
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccC
Q 016658 187 IVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLR 263 (385)
Q Consensus 187 ~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~ 263 (385)
...... .. ..++-+..+.+..+|..+.-.++++.|-+.-
T Consensus 84 ~r~~~~------------------~~--------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g 122 (311)
T KOG4205|consen 84 SREDQT------------------KV--------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFG 122 (311)
T ss_pred Cccccc------------------cc--------------------ccccceeEEEecCcCCCCchHHHhhhhhccc
Confidence 542200 00 0011233455689999999999999999853
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.00 E-value=9.7e-10 Score=98.90 Aligned_cols=86 Identities=20% Similarity=0.318 Sum_probs=76.4
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccC-CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNF-GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~-G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.......-+||..+|..+.+.+|..+|.+| |.|..+++-+++.||.++|||||+|++.+.|.-|-+.||++.|+|+.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556779999999999999999999998 7888899989999999999999999999999999999999999999887
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
+..-...
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 7764443
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.00 E-value=4.5e-10 Score=99.14 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=77.8
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD-VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~-v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
...-+.++||+||.+.++|..|.+.|+.||.+.. -.|+.+..||.++|||||.|.+.+.+.+|++.|||+.++.++|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3445689999999999999999999999998765 478899999999999999999999999999999999999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.++.++
T Consensus 172 ~ya~k~ 177 (203)
T KOG0131|consen 172 SYAFKK 177 (203)
T ss_pred EEEEec
Confidence 998775
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.96 E-value=6.9e-09 Score=94.76 Aligned_cols=84 Identities=25% Similarity=0.462 Sum_probs=75.4
Q ss_pred CCcceeeeccCCcCCChhHHHH----HhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLRE----IFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~----~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.+..+|||.||+..+..++|+. +|++||.|.+|... .|.+.+|-|||.|.+.+.|-.|+..|+|..|.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999998877 99999999999876 3568999999999999999999999999999999999
Q ss_pred EEeehhhHHHH
Q 016658 182 LLQREIVRELI 192 (385)
Q Consensus 182 V~~a~~~~~~~ 192 (385)
|.+|+.+....
T Consensus 84 iqyA~s~sdii 94 (221)
T KOG4206|consen 84 IQYAKSDSDII 94 (221)
T ss_pred eecccCccchh
Confidence 99999887643
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.9e-09 Score=106.42 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=72.1
Q ss_pred eeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhhHH
Q 016658 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIVRE 190 (385)
Q Consensus 111 vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~~~ 190 (385)
|||.||+..++..+|+++|+.||.|++|++..+.+ | ++|| ||+|+++++|++||+.|||..+.|+.|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999876 5 9999 9999999999999999999999999999987666544
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=7e-09 Score=104.83 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=77.0
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
-++.|||.+|+..+...+|+.+|++||.|+-..++++..+--.++|+||++.+.++|.+||+.|+-++|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 36889999999999999999999999999999999998887789999999999999999999999999999999999877
Q ss_pred hh
Q 016658 187 IV 188 (385)
Q Consensus 187 ~~ 188 (385)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 63
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=2.3e-09 Score=100.85 Aligned_cols=74 Identities=22% Similarity=0.326 Sum_probs=68.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|+||||.+.+|..+|++.|.+||+|.+|+|+.+ |+||.|+-.++|..|+..||+.+|+|+.++|...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 35789999999999999999999999999999999844 9999999999999999999999999999999875
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
..
T Consensus 148 ts 149 (346)
T KOG0109|consen 148 TS 149 (346)
T ss_pred cc
Confidence 54
No 70
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1e-08 Score=95.49 Aligned_cols=84 Identities=21% Similarity=0.392 Sum_probs=74.3
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee-CC--eEeEEE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR-LQ--SLLQLL 183 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l-~G--r~I~V~ 183 (385)
+.++||||-|...-.|+|++.+|..||.|.+|.++...+ |.+||||||.|.+..+|+.||..|+|..- -| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 578999999999999999999999999999999998876 99999999999999999999999999644 44 378888
Q ss_pred eehhhHHH
Q 016658 184 QREIVREL 191 (385)
Q Consensus 184 ~a~~~~~~ 191 (385)
++...+.+
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 87765543
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.1e-08 Score=102.17 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=69.8
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
..|||| +++||..|.++|+.+|.|..+++..|. | +-|||||.|.++++|++||+.||...+.|+.|+|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 9999999999999999999999999999999999987654
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.2e-08 Score=95.65 Aligned_cols=86 Identities=27% Similarity=0.363 Sum_probs=78.2
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.....++|+|.||++.|+++||+++|..||.+..+.+.+++. |.+.|.|-|.|...++|..||+.|+|+.++|+.|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 344468899999999999999999999999999999999986 9999999999999999999999999999999999988
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
.......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 7766544
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.80 E-value=7.2e-09 Score=102.03 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=70.1
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..++.++|||.|||+++||+.|++-|..||.|..++|+ ..|+++| .|.|.++++|+.|+..|+|..|+|+.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 35668899999999999999999999999999999994 3478887 899999999999999999999999999998
Q ss_pred ee
Q 016658 184 QR 185 (385)
Q Consensus 184 ~a 185 (385)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 74
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=96.38 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=69.2
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-CCCeeCCeEeE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM-DGFHRLQSLLQ 181 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l-ng~~l~Gr~I~ 181 (385)
..+..-.+|||++|-..++|.+|.++|.+||+|..+.+... ++||||+|.+.+.|+.|.+.. |...|+|++|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34455789999999999999999999999999999999754 459999999999999998865 65677999999
Q ss_pred EEeehh
Q 016658 182 LLQREI 187 (385)
Q Consensus 182 V~~a~~ 187 (385)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 998777
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=103.86 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=71.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVN---LPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg---~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..++|||.||++++|.++|..+|...|.|..+.|...++.. .+.|||||+|.+.++|++|++.|+|+.|+|..|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34559999999999999999999999999999998766421 245999999999999999999999999999999999
Q ss_pred eeh
Q 016658 184 QRE 186 (385)
Q Consensus 184 ~a~ 186 (385)
...
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 877
No 76
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.5e-08 Score=97.85 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=75.9
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
.-++|||..+..+.+|+||+..|+-||+|..|.+-.++.++.+|||||+||.+..+...||..||-..|.|..|+|....
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred h
Q 016658 187 I 187 (385)
Q Consensus 187 ~ 187 (385)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 3
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=1e-08 Score=106.28 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=78.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|+|.|||+..+-.+++++|..||.|.+|+|+.....+.++|||||+|-++.+|.+|+.+|..+.|.|+.|.++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34789999999999999999999999999999999987666788999999999999999999999999999999999999
Q ss_pred hhhHH
Q 016658 186 EIVRE 190 (385)
Q Consensus 186 ~~~~~ 190 (385)
+....
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 87644
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=2.1e-08 Score=94.00 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=79.7
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
....+...+||+|+.+.+|.+++..+|+.||.|..+.|..++.++.+||||||+|.+.+.+++|+. |||..|.|+.|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445668899999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.....+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987775
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.64 E-value=3.2e-08 Score=96.16 Aligned_cols=83 Identities=20% Similarity=0.403 Sum_probs=77.4
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
...+||||+||.++++++++++|.+||.|..+.+++|..+.+++||+||.|.+++.+++++. ..-+.|+|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999986 67889999999999888
Q ss_pred hhHH
Q 016658 187 IVRE 190 (385)
Q Consensus 187 ~~~~ 190 (385)
.+..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7654
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=2.1e-07 Score=89.59 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=74.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD--------VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
...++.|||.|||.++|-+++.++|++||.|.. |.|..+.. |+.||=|.+.|-..++++.|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445778999999999999999999999998754 78877766 999999999999999999999999999999
Q ss_pred CeEeEEEeehhh
Q 016658 177 QSLLQLLQREIV 188 (385)
Q Consensus 177 Gr~I~V~~a~~~ 188 (385)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999987543
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=2.3e-08 Score=90.83 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=74.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
.+...+|||+|+...++|+-|.++|-+.|+|..|.|..+++ ++.| ||||+|.++..+.-|++.|||..+.++.|+|+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34578999999999999999999999999999999988876 6666 999999999999999999999999999999988
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
....
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 7665
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.51 E-value=8.2e-08 Score=88.97 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=74.1
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....+||+|.|..+++++.|...|.+|-......+++++.||+++||+||-|.+..++..||..|+|..+..+.|++..
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3578999999999999999999999999888899999999999999999999999999999999999999999988653
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.51 E-value=3e-07 Score=92.71 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=70.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.....|||.|||.++++.+|+++|.+||.|+...|....-.++..+||||+|.+.+.++.||++ +-..+.++++.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3456699999999999999999999999999988876542345559999999999999999986 578889999999987
Q ss_pred hhhH
Q 016658 186 EIVR 189 (385)
Q Consensus 186 ~~~~ 189 (385)
+...
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 6643
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.43 E-value=1.6e-06 Score=70.28 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=71.8
Q ss_pred ceeeeccCCcCCChhHHHHHhcc--CCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC----CeEeEE
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSN--FGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL----QSLLQL 182 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~--~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~----Gr~I~V 182 (385)
++|.|.|+|...|.++|.+++.. .|....+.++.|..++-+.|||||.|.+.+.|..-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988764 377888999999999999999999999999999999999999885 457788
Q ss_pred EeehhhHH
Q 016658 183 LQREIVRE 190 (385)
Q Consensus 183 ~~a~~~~~ 190 (385)
.+|+....
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 88876544
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.43 E-value=1.9e-06 Score=86.52 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=88.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.....|-+.+|||.+|++||.+||+.++ |..+.+. ..+|+..|-|||||.+.+++++|++ .+-..+..+.|.|-.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 4456778889999999999999999995 7775544 4569999999999999999999998 5777788889999877
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC-CCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccCC
Q 016658 186 EIVRELIMSVLILRRMGQNDQENPLPVGSHPPRH-GGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLRG 264 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~-g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~~ 264 (385)
..... .|..+.. +|.. +.+ .-|.+ -.|||.|+=+|+.++|-.|..
T Consensus 84 ~~~e~----d~~~~~~--------------g~~s~~~d------------~vVRL----RGLPfscte~dI~~FFaGL~I 129 (510)
T KOG4211|consen 84 GGAEA----DWVMRPG--------------GPNSSAND------------GVVRL----RGLPFSCTEEDIVEFFAGLEI 129 (510)
T ss_pred CCccc----cccccCC--------------CCCCCCCC------------ceEEe----cCCCccCcHHHHHHHhcCCcc
Confidence 65432 1111111 1111 111 11333 599999999999999987744
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=79.40 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC---CeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMD-RAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL---QSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d-~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~---Gr~I~ 181 (385)
..-++|||.+||.++...+|+.+|..|--.+.+.|... +.....+-+|||+|.+..+|.+|++.|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34789999999999999999999999865555555432 222234579999999999999999999999995 67899
Q ss_pred EEeehhhHH
Q 016658 182 LLQREIVRE 190 (385)
Q Consensus 182 V~~a~~~~~ 190 (385)
++.++.+.+
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999988755
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.27 E-value=5.4e-06 Score=81.56 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=95.1
Q ss_pred cceeeeccCC-cCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 108 SLVLYIDSLS-RNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 108 ~~~vfVgnLp-~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+..|.|.||. +.+|.+.|..+|+.||.|..|.|+.++. --|.|.|.+...|+-|++.|+|..|.|+.|+|...+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 6788999995 6799999999999999999999998764 369999999999999999999999999999999876
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCCCCCC----CCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 187 IVRELIMSVLILRRMGQNDQENPLPVGSHP----PRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 187 ~~~~~~~~~~~~~r~~~~~~~~~~p~~~~p----p~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
-..-. +.+.+...+.--.+....| +++|...+... .-.. ..+| .+|+|..|+-+|+|.+|-..
T Consensus 372 H~~vq------lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni---~Pps--atlH--lsnip~svsee~lk~~f~~~ 438 (492)
T KOG1190|consen 372 HTNVQ------LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNI---FPPS--ATLH--LSNIPPSVSEEDLKNLFQEP 438 (492)
T ss_pred Ccccc------CCCCCCccccccccCCCCchhhccCccccccccc---CCch--hhee--eccCCcccchhHHHHhhhcC
Confidence 64321 1122222211112222222 22222211110 0001 1334 38999999999999998764
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.22 E-value=9.3e-07 Score=85.79 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVV--------DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
.....+|||.+|+..+++++|.++|.++|.|. .|.|.++++|+.+||-|.|.|.+...|+.|++.+++..|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678999999999999999999999999885 3678889999999999999999999999999999999999
Q ss_pred CeEeEEEeehhhH
Q 016658 177 QSLLQLLQREIVR 189 (385)
Q Consensus 177 Gr~I~V~~a~~~~ 189 (385)
|..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887754
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=1.2e-06 Score=89.07 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=65.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.....+|+|-|||..|++++|..+|+.||+|..|+.- -..+|..||+|.+..+|+.|+++|++.++.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3457899999999999999999999999999997653 34578999999999999999999999999999888
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=1.6e-06 Score=88.69 Aligned_cols=84 Identities=15% Similarity=0.292 Sum_probs=79.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
...++||+|||...++..+.++...||.+....++.+..+|.++||||.||.+......|+..|||..+.++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhHH
Q 016658 187 IVRE 190 (385)
Q Consensus 187 ~~~~ 190 (385)
....
T Consensus 368 ~g~~ 371 (500)
T KOG0120|consen 368 VGAS 371 (500)
T ss_pred ccch
Confidence 7544
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=1.3e-05 Score=82.06 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=63.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccC-----------C-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNF-----------G-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~-----------G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng 172 (385)
..+...+||++++..++++.+-.+|..- | .+..+.+. ..+.|||++|.+.++|..|+. +++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhc-ccc
Confidence 3457889999999999999999888653 2 25666664 345699999999999999995 899
Q ss_pred CeeCCeEeEEEeehhhH
Q 016658 173 FHRLQSLLQLLQREIVR 189 (385)
Q Consensus 173 ~~l~Gr~I~V~~a~~~~ 189 (385)
..+.|+.+++.......
T Consensus 245 ~~f~g~~~~~~r~~d~~ 261 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQ 261 (500)
T ss_pred hhhCCCCceeccccccc
Confidence 99999999888766643
No 92
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=98.06 E-value=7.1e-06 Score=83.71 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 016658 192 IMSVLILRRM 201 (385)
Q Consensus 192 ~~~~~~~~r~ 201 (385)
...+||..+|
T Consensus 743 nK~g~f~~Rm 752 (757)
T KOG4368|consen 743 NKSYSFIARM 752 (757)
T ss_pred hhchhhhhcc
Confidence 3344444444
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.01 E-value=1.7e-05 Score=76.74 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=70.8
Q ss_pred cceeeeccCCcCCChhHHHHHhccCC--ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFG--EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.-.+|||||-|++|++||.+.+...| .+.++++..++.+|++||||+|...+....++.|+.|-.++|+|+.-.|..-
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 45689999999999999999887776 5677888888888999999999999999999999999999999996666655
Q ss_pred hhhHH
Q 016658 186 EIVRE 190 (385)
Q Consensus 186 ~~~~~ 190 (385)
.+...
T Consensus 160 NK~~~ 164 (498)
T KOG4849|consen 160 NKTNQ 164 (498)
T ss_pred chhhH
Confidence 44433
No 94
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=97.89 E-value=2.1e-05 Score=80.38 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=3.5
Q ss_pred cceEEEE
Q 016658 150 RGSGYVR 156 (385)
Q Consensus 150 rG~aFVe 156 (385)
||.+|++
T Consensus 728 KGvG~~l 734 (757)
T KOG4368|consen 728 KGVGVAL 734 (757)
T ss_pred cccCccc
Confidence 4455554
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.76 E-value=7e-05 Score=58.65 Aligned_cols=72 Identities=29% Similarity=0.435 Sum_probs=48.7
Q ss_pred ceeeeccCCcCCChhH----HHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 109 LVLYIDSLSRNVNEGH----LREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 109 ~~vfVgnLp~~vte~d----L~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..|||.|||.+.+... |++++..+| .|..|. .+.|+|-|.+.+.|+.|.+.|+|..+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999888655 567777886 566551 3589999999999999999999999999999999
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
+....+.
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8866544
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=1.7e-05 Score=73.19 Aligned_cols=74 Identities=24% Similarity=0.319 Sum_probs=65.2
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.+....+.++|.|++..+.|.+|.++|.++|.+....+ ..+++||+|...++|..|++.|+|..+.++.|.+
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 34566889999999999999999999999999855544 3459999999999999999999999999999999
Q ss_pred Ee
Q 016658 183 LQ 184 (385)
Q Consensus 183 ~~ 184 (385)
..
T Consensus 166 ~~ 167 (216)
T KOG0106|consen 166 EK 167 (216)
T ss_pred cc
Confidence 43
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.72 E-value=3.1e-05 Score=70.93 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
..+.+|||.||...+||++|+.+|+.|....-++|.. + .| -..||++|++.+.|..||..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 3467899999999999999999999997655555532 2 13 34899999999999999999999876
No 98
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00013 Score=74.62 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCcceeeeccCCcCCCh------hHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 016658 106 NDSLVLYIDSLSRNVNE------GHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ-S 178 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte------~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G-r 178 (385)
.....|+|.|+|.--.. .-|..+|+++|+|..+.++.+..+ ..+||.|+||.+..+|+.|++.|||+.|+- .
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44678999999853221 235688999999999999988874 499999999999999999999999999864 4
Q ss_pred EeEEEeehhh
Q 016658 179 LLQLLQREIV 188 (385)
Q Consensus 179 ~I~V~~a~~~ 188 (385)
+..|..-+.-
T Consensus 135 tf~v~~f~d~ 144 (698)
T KOG2314|consen 135 TFFVRLFKDF 144 (698)
T ss_pred eEEeehhhhH
Confidence 6666655543
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.00011 Score=60.75 Aligned_cols=73 Identities=30% Similarity=0.381 Sum_probs=45.2
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC-----CeeCCeEeEEE
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG-----FHRLQSLLQLL 183 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng-----~~l~Gr~I~V~ 183 (385)
+.|+|.++...++.++|++.|.+||.|..|.+.... .-|||-|.+.+.|+.|++.+.. ..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999986543 2799999999999999987743 45667666666
Q ss_pred eehh
Q 016658 184 QREI 187 (385)
Q Consensus 184 ~a~~ 187 (385)
....
T Consensus 76 vLeG 79 (105)
T PF08777_consen 76 VLEG 79 (105)
T ss_dssp ---H
T ss_pred ECCC
Confidence 5433
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.55 E-value=0.0009 Score=65.76 Aligned_cols=86 Identities=9% Similarity=0.196 Sum_probs=72.3
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCc-eEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGE-VVD--VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~-I~~--v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
+......|-+.+||+..|.++|-+||..|-. |.. |.|+.+.. |++.|-|||+|.+.|.|.+|+...+.+..+++.|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 3344567888999999999999999999863 444 77877765 8999999999999999999999988888889999
Q ss_pred EEEeehhhHH
Q 016658 181 QLLQREIVRE 190 (385)
Q Consensus 181 ~V~~a~~~~~ 190 (385)
.|-.......
T Consensus 355 Evfp~S~eel 364 (508)
T KOG1365|consen 355 EVFPCSVEEL 364 (508)
T ss_pred EEeeccHHHH
Confidence 9998766543
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.51 E-value=0.00021 Score=68.97 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=64.2
Q ss_pred cceeeeccCCcCCChhH----H--HHHhccCCceEEEEEeecCCC-CCccceE--EEEeCCHHHHHHHHHHhCCCeeCCe
Q 016658 108 SLVLYIDSLSRNVNEGH----L--REIFSNFGEVVDVELVMDRAV-NLPRGSG--YVRFKTRADAEKAQLYMDGFHRLQS 178 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~d----L--~~~F~~~G~I~~v~i~~d~~t-g~srG~a--FVeF~~~e~A~~Al~~lng~~l~Gr 178 (385)
..-+||-+|+..+..++ | .++|++||.|..|.+.+..-+ ....+.+ ||+|.+.|+|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46689999998877666 3 489999999999877543311 1122333 9999999999999999999999999
Q ss_pred EeEEEeehhhH
Q 016658 179 LLQLLQREIVR 189 (385)
Q Consensus 179 ~I~V~~a~~~~ 189 (385)
.|+..+...+.
T Consensus 194 ~lkatYGTTKY 204 (480)
T COG5175 194 VLKATYGTTKY 204 (480)
T ss_pred eEeeecCchHH
Confidence 99998876653
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.49 E-value=0.00031 Score=64.62 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=69.2
Q ss_pred CccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-CeEe
Q 016658 102 ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-QSLL 180 (385)
Q Consensus 102 ~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-Gr~I 180 (385)
....++...+|+.|||..++.+.|..+|.+|.....++++... .+.|||+|.+...|..|...++|..+- ...+
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 4446778899999999999999999999999999999987543 579999999999999999999998885 7788
Q ss_pred EEEeeh
Q 016658 181 QLLQRE 186 (385)
Q Consensus 181 ~V~~a~ 186 (385)
+|.+++
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 887664
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.00023 Score=71.88 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=66.4
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVD-VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~-v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
....|-+.+||+.||++||.+||+..-.+.. +.++.++. +++.|-|||.|++.+.|++|+.. |...|.-+.|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4667888999999999999999998744444 44556655 88999999999999999999974 677888888998876
Q ss_pred hhhHH
Q 016658 186 EIVRE 190 (385)
Q Consensus 186 ~~~~~ 190 (385)
....-
T Consensus 180 s~~e~ 184 (510)
T KOG4211|consen 180 SRAEV 184 (510)
T ss_pred HHHHH
Confidence 65443
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.40 E-value=8.8e-05 Score=71.84 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCcceee-eccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 106 NDSLVLY-IDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 106 ~~~~~vf-VgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++| |+||++.+++++|+.+|..+|.|..+++..+..++..+|||||+|.+...+..++.. +...+.++.+.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455566 999999999999999999999999999999999999999999999999999999876 78888899888876
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 6553
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=0.00049 Score=67.60 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=56.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccC----CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNF----GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~----G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.-.|-+.+||+++|+.++.+||..- |....|.++..++ |+..|-|||.|..+++|+.|+.. |...+.-|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3445667999999999999999743 3455666666554 89999999999999999999975 4445554555544
Q ss_pred e
Q 016658 184 Q 184 (385)
Q Consensus 184 ~ 184 (385)
.
T Consensus 239 R 239 (508)
T KOG1365|consen 239 R 239 (508)
T ss_pred H
Confidence 3
No 106
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.13 E-value=0.0011 Score=69.35 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=64.6
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceE-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVV-DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~-~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.+.|-+.|+|++++-+||.+||..|-.+- +|.+.++ +.|...|-|.|.|++.++|..|...|+++.|..++|++.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 44788999999999999999999996553 3444444 459999999999999999999999999999999998875
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.0034 Score=56.22 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=56.8
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
....|.|.+||...+|+||++++.+.|.|....+.+| |++.|+|...|+.+-|+..|+.+.+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3578999999999999999999999999999888655 48999999999999999999887764
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.94 E-value=0.0015 Score=47.09 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=40.5
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al 167 (385)
+.|-|.+.+.+.. +++..+|..||+|.++.+.. ...+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4566778876665 44556899999999988852 2348999999999999985
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0027 Score=64.76 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=50.9
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC---CCccc---eEEEEeCCHHHHHHHHHHh
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV---NLPRG---SGYVRFKTRADAEKAQLYM 170 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t---g~srG---~aFVeF~~~e~A~~Al~~l 170 (385)
...-.++||||+||++++|+.|...|..||.+. |+.....+. -.++| |+|+.|+++..++.-|.++
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 344579999999999999999999999999764 444421111 23566 9999999999988877665
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.74 E-value=0.0013 Score=65.48 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=58.1
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeec---CCC--CC--------ccceEEEEeCCHHHHHHHHHH
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMD---RAV--NL--------PRGSGYVRFKTRADAEKAQLY 169 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d---~~t--g~--------srG~aFVeF~~~e~A~~Al~~ 169 (385)
.+.-+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|+.. +.+ +. .+-||||||+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999888999999999999999999865 332 11 256899999999999999997
Q ss_pred hCC
Q 016658 170 MDG 172 (385)
Q Consensus 170 lng 172 (385)
|+.
T Consensus 306 ~~~ 308 (484)
T KOG1855|consen 306 LNP 308 (484)
T ss_pred hch
Confidence 754
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0032 Score=64.20 Aligned_cols=66 Identities=24% Similarity=0.372 Sum_probs=60.8
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhc-cCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHH
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFS-NFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~-~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ 169 (385)
+..+.+|||||+||--+|.++|-.+|. -||.|..+-|-+|++-+.++|-|-|+|.+..+--+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345679999999999999999999998 799999999999988899999999999999999999985
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.69 E-value=0.013 Score=57.63 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=70.5
Q ss_pred cCCCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 104 TENDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
...+++.+.|.+|.. .++-+.|..+|-.||.|..|.+++.+ .|-|.||+.+..+.+.|+..||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 345688999999976 46667899999999999999998654 468999999999999999999999999999999
Q ss_pred EeehhhH
Q 016658 183 LQREIVR 189 (385)
Q Consensus 183 ~~a~~~~ 189 (385)
...+...
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9877653
No 113
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.69 E-value=0.0016 Score=64.61 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC--eeCCeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF--HRLQSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~--~l~Gr~I~V~ 183 (385)
.++..|.++|||++++|++|.+++..||.|..+.++..++ -||+||.+.++|-..+..+... .+-|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3577899999999999999999999999999998876543 7999999999988766555443 4567777777
Q ss_pred ee
Q 016658 184 QR 185 (385)
Q Consensus 184 ~a 185 (385)
+.
T Consensus 100 ~s 101 (492)
T KOG1190|consen 100 YS 101 (492)
T ss_pred hh
Confidence 63
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.57 E-value=0.0015 Score=61.20 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=61.3
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC--------CCccc----eEEEEeCCHHHHHHHHHHhCCCe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV--------NLPRG----SGYVRFKTRADAEKAQLYMDGFH 174 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t--------g~srG----~aFVeF~~~e~A~~Al~~lng~~ 174 (385)
..-.||+++||+.+....|+++|+.||.|-.|.+-....+ |.+++ -|.|||.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988765544 22322 35799999999999999999999
Q ss_pred eCCe
Q 016658 175 RLQS 178 (385)
Q Consensus 175 l~Gr 178 (385)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9997
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.42 E-value=0.018 Score=46.99 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=50.4
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEE-EeecC------CCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE-
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVE-LVMDR------AVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL- 179 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~-i~~d~------~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~- 179 (385)
.+-|.|-+.|... ...+.++|++||.|.+.. +..+. ..-....+-.|.|.++.+|.+||. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4557777888874 466778899999998774 10000 001234589999999999999997 6999999864
Q ss_pred eEEEeehh
Q 016658 180 LQLLQREI 187 (385)
Q Consensus 180 I~V~~a~~ 187 (385)
+-|.+.+.
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 44555543
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.31 E-value=0.0053 Score=61.16 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC-eeCCeEeEEEeehh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF-HRLQSLLQLLQREI 187 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~-~l~Gr~I~V~~a~~ 187 (385)
+++|+|||...++..||..+|...---..-.++. .-||+||.+.+...|.+|++.++|+ ++.|+++.|.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4789999999999999999997652111112221 2369999999999999999999995 78999999998766
Q ss_pred hHHHHH
Q 016658 188 VRELIM 193 (385)
Q Consensus 188 ~~~~~~ 193 (385)
++.+..
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 655433
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.21 E-value=0.0032 Score=67.86 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=72.4
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEEe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ--SLLQLLQ 184 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V~~ 184 (385)
..+.+||++|..++....|...|..||.|..|.+-. |. -||||.|++...|+.|+..|.|..|.| +.|.|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 367899999999999999999999999999987732 33 399999999999999999999999976 5799999
Q ss_pred ehhhHHHHHHHHH
Q 016658 185 REIVRELIMSVLI 197 (385)
Q Consensus 185 a~~~~~~~~~~~~ 197 (385)
+........++++
T Consensus 528 a~~~~~~Pqq~~~ 540 (975)
T KOG0112|consen 528 ASPPGATPQQNLL 540 (975)
T ss_pred ccCCCCChhhhcc
Confidence 9887665555443
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=0.00057 Score=73.09 Aligned_cols=71 Identities=25% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
.+..++||.||+..+.+.+|...|..+|.+..+.+....++++.+|+||++|...+.+.+||... -..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~-d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR-DSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh-hhhhhh
Confidence 44688999999999999999999999999988888767777999999999999999999999754 444444
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.13 E-value=0.018 Score=56.26 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=60.8
Q ss_pred CCcceeeeccCCc----CCC-------hhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCe
Q 016658 106 NDSLVLYIDSLSR----NVN-------EGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFH 174 (385)
Q Consensus 106 ~~~~~vfVgnLp~----~vt-------e~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~ 174 (385)
...++|.+.|+=. ..+ +++|.+-..+||.|..|.+. ++ .+.|.+-|.|.+.++|..||+.|+|.-
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3467888888832 233 24555667899999999774 43 478999999999999999999999999
Q ss_pred eCCeEeEEEeehh
Q 016658 175 RLQSLLQLLQREI 187 (385)
Q Consensus 175 l~Gr~I~V~~a~~ 187 (385)
|.|+.|.-.....
T Consensus 339 fdgRql~A~i~DG 351 (382)
T KOG1548|consen 339 FDGRQLTASIWDG 351 (382)
T ss_pred ecceEEEEEEeCC
Confidence 9999988665433
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.01 E-value=0.032 Score=48.50 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=51.4
Q ss_pred CCCcceeeeccCC-----cCCChh----HHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 105 ENDSLVLYIDSLS-----RNVNEG----HLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 105 ~~~~~~vfVgnLp-----~~vte~----dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
.++..+|.|.=+. .....+ +|-+.|..||++.-++++- +.-+|+|.+-+.|-+|+. |+|.++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 3445666666444 112222 5667889999988888763 368999999999999997 899999
Q ss_pred CCeEeEEEeehhh
Q 016658 176 LQSLLQLLQREIV 188 (385)
Q Consensus 176 ~Gr~I~V~~a~~~ 188 (385)
+|+.|+|......
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999976654
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.0029 Score=67.85 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=66.6
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
...|||.|+|+..|.++|+.+|..+|.+.++.++..+. |+++|.|||.|.++.++..++...++..+.-+.+.|.-
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 46799999999999999999999999999999888876 99999999999999999999988777777666555544
No 122
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.62 E-value=0.031 Score=55.06 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=59.7
Q ss_pred cCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-C-eEeEEEeehhhHH
Q 016658 115 SLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-Q-SLLQLLQREIVRE 190 (385)
Q Consensus 115 nLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-G-r~I~V~~a~~~~~ 190 (385)
|--+-+|.+-|+.+....|.|..|.|... +| --|.|||++.+.|++|.+.|||..|. | -+|+|++|+..+-
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 54567899999999999999999988754 23 36999999999999999999998875 4 3899999887654
No 123
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.36 E-value=0.012 Score=60.97 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=64.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhcc-CCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee---CCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSN-FGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR---LQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~-~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l---~Gr~I~ 181 (385)
..++.|||.||-.-.|.-.|+++++. .|.|.+.. +| +-|..|||.|.+.++|-+...+|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHH--HH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 45788999999888999999999984 55666662 33 3466899999999999999999999988 567888
Q ss_pred EEeehhhHH
Q 016658 182 LLQREIVRE 190 (385)
Q Consensus 182 V~~a~~~~~ 190 (385)
+.|......
T Consensus 516 adf~~~del 524 (718)
T KOG2416|consen 516 ADFVRADEL 524 (718)
T ss_pred eeecchhHH
Confidence 888776544
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.32 E-value=0.0072 Score=56.73 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=49.6
Q ss_pred HHHHHhc-cCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 124 HLREIFS-NFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 124 dL~~~F~-~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
+|...|+ +||+|..+.+..+.. -.-.|-+||.|...++|++|++.||+--+.|++|.......
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 899999986654432 45678899999999999999999999999999988776433
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.23 E-value=0.047 Score=54.18 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=60.6
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV---NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t---g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..|-|.||.+.+|.++++.+|+..|.|.++.|+..... ....-.|||-|.+...+..|-. |..+.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 37899999999999999999999999999988753332 2334589999999998888874 7788887776665543
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.70 E-value=0.088 Score=50.45 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=51.3
Q ss_pred hHHHHHhccCCceEEEEEeecCCCCCcc-ceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 123 GHLREIFSNFGEVVDVELVMDRAVNLPR-GSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 123 ~dL~~~F~~~G~I~~v~i~~d~~tg~sr-G~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++++.+++||.|..|.|...+.--... ---||+|...++|.+|+--|||..|.|+.+.-.+-..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4567888999999999887765422111 2369999999999999999999999999988665443
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.62 E-value=0.061 Score=56.87 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=65.9
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD-VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~-v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.+..-+..|||-.||..+++.++.++|...-.|++ |.|-..+ +++-++.|||+|..++++..|...-+.+.+..+.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34455789999999999999999999988777777 6665555 478899999999998888888865445555667888
Q ss_pred EEeehh
Q 016658 182 LLQREI 187 (385)
Q Consensus 182 V~~a~~ 187 (385)
|..-.+
T Consensus 508 v~si~~ 513 (944)
T KOG4307|consen 508 VDSIAD 513 (944)
T ss_pred eechhh
Confidence 875433
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.48 E-value=0.037 Score=52.02 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=60.2
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC----eeCCeEeEEE
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF----HRLQSLLQLL 183 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~----~l~Gr~I~V~ 183 (385)
..|||.||+..+..+.|.+.|..||+|....++.|.. ++..+-++|+|...-.|.+|+..++-. ...++..-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 7899999999999999999999999998876666654 888899999999999999999877433 3344444444
No 129
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=94.16 E-value=0.54 Score=42.27 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=4.2
Q ss_pred eEEEEeCC
Q 016658 152 SGYVRFKT 159 (385)
Q Consensus 152 ~aFVeF~~ 159 (385)
+||..|.+
T Consensus 133 MGf~gF~T 140 (180)
T PF08648_consen 133 MGFGGFGT 140 (180)
T ss_pred hccccccc
Confidence 45555554
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.73 E-value=0.026 Score=54.99 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=62.0
Q ss_pred cceeeeccCCcCCChhHH-H--HHhccCCceEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 108 SLVLYIDSLSRNVNEGHL-R--EIFSNFGEVVDVELVMDRA----VNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL-~--~~F~~~G~I~~v~i~~d~~----tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
...+||-+|+..+..+.+ + +.|.+||.|..|.+..+.. .+.. .-+||+|...++|..||...+|..++|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 466899999887665544 3 6899999999998877652 1222 237999999999999999999999999987
Q ss_pred EEEeehhh
Q 016658 181 QLLQREIV 188 (385)
Q Consensus 181 ~V~~a~~~ 188 (385)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 76665544
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.68 E-value=0.24 Score=36.81 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=44.0
Q ss_pred cceeeeccCCcCCChhHHHHHhccC---CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNF---GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~---G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l 170 (385)
..+|+|.|+. .++.++|+.+|..| .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999985 57778999999988 235678887664 4889999999999999764
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.38 E-value=0.19 Score=51.99 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=56.4
Q ss_pred ceeeeccCCcCCChhHHHHHh-ccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC----CeEeEEE
Q 016658 109 LVLYIDSLSRNVNEGHLREIF-SNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL----QSLLQLL 183 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F-~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~----Gr~I~V~ 183 (385)
+++.|.|++...|-..|.+.- ...|.-..+.++.|-.+..+.|||||.|.+++.+..+.+++||+.+. .+...++
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 334444444444433332221 22566677888888888889999999999999999999999998763 2466677
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
+|+...+
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 7766544
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.86 E-value=0.027 Score=60.97 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=61.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL 179 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~ 179 (385)
.+.+||+|||...+++.+|+..|..+|.|.+|.|-..+. +.---||||.|.+.+.+-.|+..+.+..|..-.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~ 442 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT 442 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCc
Confidence 478999999999999999999999999999999866533 444569999999999999999988887764433
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.70 E-value=0.49 Score=36.21 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=36.6
Q ss_pred CcCCChhHHHHHhccCC-----ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 117 SRNVNEGHLREIFSNFG-----EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 117 p~~vte~dL~~~F~~~G-----~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
-..++..+|..++...+ .|-.++|.. .|+||+-.. +.|+.+++.|++..+.|+.|+|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35678888888887654 456777742 289999875 5789999999999999999999864
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.28 E-value=1.3 Score=36.82 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=50.6
Q ss_pred cceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
...+.+...|+.++-++|..+.+.+- .|..++|+++.. .++=.+.+.|.+.+.|.+..+.+||+.|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444555666677677776666553 577888887753 356678899999999999999999998865
No 136
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.98 E-value=0.25 Score=44.49 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=46.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhcc-CCce---EEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSN-FGEV---VDVELVMDRAV--NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~-~G~I---~~v~i~~d~~t--g~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
....+|.|.+||+..||+++.+.+.. ++.. ..+.-.....+ ...-.-|||.|.+.+++..-+..++|..|..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 44679999999999999999987776 5554 33332222221 1223568999999999999999999988743
No 137
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.04 E-value=0.12 Score=52.57 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=50.9
Q ss_pred ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 121 NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 121 te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
|.++|..+|.+||+|..|.+-+... .|.|+|.+..+|-.|.. ..+..|+++-|+|.|-+.
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 4578999999999999999865533 69999999999966664 689999999999998776
No 138
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.84 E-value=1.1 Score=35.39 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=40.2
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng 172 (385)
...||+ .|......||.++|+.||.|. |..+-| .-|||.....+.|..|+..++-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344554 899999999999999999875 444433 2699999999999999998753
No 139
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.55 E-value=0.77 Score=41.69 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=45.0
Q ss_pred hhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCeeCCeEeEEEeehh
Q 016658 122 EGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD--GFHRLQSLLQLLQREI 187 (385)
Q Consensus 122 e~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln--g~~l~Gr~I~V~~a~~ 187 (385)
.+.|+++|..|+.+..+..+. +-+-..|.|.+.+.|..|...|+ +..+.|..++|.++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 478999999999888877663 33468999999999999999999 9999999999988743
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.49 E-value=0.42 Score=49.63 Aligned_cols=69 Identities=13% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhcc--CCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC--CeeCCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSN--FGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG--FHRLQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~--~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng--~~l~Gr~I~ 181 (385)
..-|.|.+..||..+-+++++.+|.. +-.+.+|.+-.+.+ =||+|++..+|+.|.+.|.. ++|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34577889999999999999999965 66788888765432 59999999999999988743 567777654
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.64 E-value=1.4 Score=38.21 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCCcceeeeccCCcCCCh-hH---HHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 105 ENDSLVLYIDSLSRNVNE-GH---LREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte-~d---L~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
+++-.+|.|.=|...+.. +| +...++.||+|.+|.+. | +--|.|.|.+..+|-+|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 445667778765544432 34 44567889999999875 3 23799999999999999998865 5556666
Q ss_pred EEEe
Q 016658 181 QLLQ 184 (385)
Q Consensus 181 ~V~~ 184 (385)
+..+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 6554
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.48 E-value=0.2 Score=48.68 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=63.2
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
...+++|++++.+.+.+.++..+|..+|.+..+.+........++|++++.|...+.+..|+.......+.+..+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccccc
Confidence 4578899999999999999999999999988888887777789999999999999999999974333455555443
No 143
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.25 E-value=1.3 Score=42.93 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=52.0
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEEEeehh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQS-LLQLLQREI 187 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr-~I~V~~a~~ 187 (385)
.=|-|-+++..-+ ..|-.+|++||+|++.... ....+-+|-|.+.-+|++||. .||..|+|. .|-|..-..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 3344556666544 4566789999999887653 233499999999999999998 699999987 455655333
No 144
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.98 E-value=0.24 Score=52.26 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=62.7
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.+.++.-+|||+|+.+.+..+-++.+...+|.|..+.... |||.+|.....+..|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3455677899999999999999999999999988775532 9999999999999999999888998887665
Q ss_pred Eee
Q 016658 183 LQR 185 (385)
Q Consensus 183 ~~a 185 (385)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 543
No 145
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.60 E-value=0.59 Score=49.31 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=8.2
Q ss_pred cceeeeccCCcCCChh
Q 016658 108 SLVLYIDSLSRNVNEG 123 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~ 123 (385)
...-|..|-+..+..+
T Consensus 845 ~~~~~~q~~~~qvs~~ 860 (878)
T KOG1847|consen 845 DNIPYLQNEPSQVSDE 860 (878)
T ss_pred cCccccccchhhhHHH
Confidence 3444555555555543
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.85 E-value=0.31 Score=52.85 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=62.6
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee--CCeEeEEEeeh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR--LQSLLQLLQRE 186 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l--~Gr~I~V~~a~ 186 (385)
.+.++.|.+-..+-..|..+|.+||.|.+.+.+++-+ .|.|+|.+.+.|-.|+++|+|+++ -|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3445666666777788899999999999999887765 899999999999999999999876 57788998887
Q ss_pred hhH
Q 016658 187 IVR 189 (385)
Q Consensus 187 ~~~ 189 (385)
...
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 653
No 147
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=86.28 E-value=1.2 Score=48.14 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=24.6
Q ss_pred CccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 148 LPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 148 ~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
-..|+-||=++...++..|+. .|.+|+|-.+...+
T Consensus 507 ~~lGVt~IP~~kLt~dl~~~~--egam~d~~t~~p~~ 541 (894)
T KOG0132|consen 507 VELGVTYIPWEKLTDDLEAWC--EGAMLDGTTGPPEW 541 (894)
T ss_pred cccCeeEeehHhcCHHHHHhh--hhceecCccCCccc
Confidence 346888898887777777764 48888887555444
No 148
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.23 E-value=3.8 Score=41.81 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=57.6
Q ss_pred cceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
++.|+|-.+|..+|-.||-.|+..|- .|.+++|++|.. .++=..+|.|.+.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999988764 688999998643 233356899999999999999999998865
No 149
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.82 E-value=11 Score=28.40 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=42.8
Q ss_pred CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 119 NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 119 ~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.++-++++..+..|+- ..| ..++ | | =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4778899999999963 333 3333 2 2 479999999999999999999998877764
No 150
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=76.53 E-value=5 Score=37.28 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=7.9
Q ss_pred EEEeecCCCCCcc
Q 016658 138 VELVMDRAVNLPR 150 (385)
Q Consensus 138 v~i~~d~~tg~sr 150 (385)
|+-++|+.||..+
T Consensus 172 IRrVvDpETGRtR 184 (225)
T PF10500_consen 172 IRRVVDPETGRTR 184 (225)
T ss_pred heeeecCCCCcee
Confidence 3445677777654
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.32 E-value=10 Score=40.00 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=57.4
Q ss_pred CCCcceeeeccCCcC-CChhHHHHHhccC----CceEEEEEeecCC----------CCC---------------------
Q 016658 105 ENDSLVLYIDSLSRN-VNEGHLREIFSNF----GEVVDVELVMDRA----------VNL--------------------- 148 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~-vte~dL~~~F~~~----G~I~~v~i~~d~~----------tg~--------------------- 148 (385)
...+.+|-|.||.|+ +...||.-+|..| |.|..|.|..... +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999996 7788999999877 6888887754221 122
Q ss_pred ----------------ccceEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 016658 149 ----------------PRGSGYVRFKTRADAEKAQLYMDGFHRLQS 178 (385)
Q Consensus 149 ----------------srG~aFVeF~~~e~A~~Al~~lng~~l~Gr 178 (385)
-.=||.|+|.+.+.|.+..+.++|.+|...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 012789999999999999999999998654
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=68.76 E-value=1.3 Score=41.13 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=61.5
Q ss_pred Ccceeeecc----CCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 107 DSLVLYIDS----LSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 107 ~~~~vfVgn----Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
...+++.|| |...++++.+.+.|++.|.+..+++..+.+ |+++.++|+++.-..+.-.++..+.+..+.-+++.
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 356788888 888899999999999999999999988876 88999999999988888888887777665444333
No 153
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.28 E-value=20 Score=35.61 Aligned_cols=8 Identities=38% Similarity=0.289 Sum_probs=4.0
Q ss_pred Cchhhhhh
Q 016658 328 DALALQFA 335 (385)
Q Consensus 328 ~~~~~~~~ 335 (385)
++||-|||
T Consensus 332 aamA~Yv~ 339 (426)
T KOG2812|consen 332 AAMAAYVA 339 (426)
T ss_pred HHHHHHHH
Confidence 44555554
No 154
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=61.87 E-value=10 Score=41.10 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=9.6
Q ss_pred CCCCchhHHHHHhhhh
Q 016658 358 GDHHPTLHHLVRAGYL 373 (385)
Q Consensus 358 ~~~~~~~~~~~~~~~~ 373 (385)
-||-||+=|-|.+-|.
T Consensus 469 aQhIVtiVH~VKa~~F 484 (646)
T PF15440_consen 469 AQHIVTIVHHVKAQHF 484 (646)
T ss_pred HHhhhheeeeeecccc
Confidence 4566666666666553
No 155
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.08 E-value=22 Score=34.34 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=36.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCce-EEEEEeecCCCCCccceEEEEeCCHH
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEV-VDVELVMDRAVNLPRGSGYVRFKTRA 161 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I-~~v~i~~d~~tg~srG~aFVeF~~~e 161 (385)
.+-||++||+.++.-.||+..+.+.|.+ ..+.+ ..+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4559999999999999999988887643 33332 346788999997643
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=54.37 E-value=0.8 Score=46.16 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELV-MDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~-~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
.+++-|.|+|....|+.|..++.+||.+..|..+ ++.. .-.--|+|...+.++.||..|+|..|....++|.+--
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 6778999999999999999999999999888653 2222 2234568999999999999999999999988888754
Q ss_pred hh
Q 016658 187 IV 188 (385)
Q Consensus 187 ~~ 188 (385)
..
T Consensus 156 de 157 (584)
T KOG2193|consen 156 DE 157 (584)
T ss_pred hh
Confidence 43
No 157
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=3.8 Score=41.63 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=64.8
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
+.+.|+..|+...++.++.-+|..||.|..+.+-...+.+-.+-.+||.-.+ +.+..+|..+..+.+.|..++|..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456788899999999999999999999998887666666677788888765 568889988888888888887776665
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 4
No 158
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=52.85 E-value=16 Score=27.78 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=46.7
Q ss_pred hHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 123 GHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 123 ~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
.+|++.|...| .+..+.-+....++.+-..-||+.....+... .|+=+.|+|+.|.|+.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46778888888 68888888888877777788888876544333 45667889999999876553
No 159
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.82 E-value=32 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=30.4
Q ss_pred eeeeccCCcC---------CChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHH
Q 016658 110 VLYIDSLSRN---------VNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKT-RADAEKAQL 168 (385)
Q Consensus 110 ~vfVgnLp~~---------vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~-~e~A~~Al~ 168 (385)
.+.|-|++.. ++.+.|.+.|..|..+. +..+.++. -+.|+++|+|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4556666543 35578999999998775 55556553 578999999984 444555554
No 160
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.20 E-value=23 Score=26.71 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=45.6
Q ss_pred hHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 123 GHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 123 ~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
++|.+.|...| .|..+.-+..+.++.+--.-||++....+ ..+.|+=..+++..|+|+.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46777777777 67888777777667777788888876544 33345667889999999977653
No 161
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=44.74 E-value=31 Score=31.14 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=45.9
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~ 168 (385)
.......+++++++..++..++...|..+|.+....+...........+.++.+.....+..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 34567889999999999999999999999999877776655434444445544444444444443
No 162
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=37.84 E-value=14 Score=32.94 Aligned_cols=6 Identities=33% Similarity=0.955 Sum_probs=2.7
Q ss_pred EEEEeC
Q 016658 153 GYVRFK 158 (385)
Q Consensus 153 aFVeF~ 158 (385)
+|+.|.
T Consensus 151 Gf~gFD 156 (196)
T KOG3263|consen 151 GFSGFD 156 (196)
T ss_pred CcCccc
Confidence 444444
No 163
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.19 E-value=90 Score=31.74 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=43.1
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCc-eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGE-VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~ 168 (385)
...|-|.++|.....+||-..|..|+. --+|.++-+. .||..|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 466788899998888999999999964 2345555443 79999999999999996
No 164
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.40 E-value=32 Score=34.97 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=3.1
Q ss_pred CChhHHH
Q 016658 120 VNEGHLR 126 (385)
Q Consensus 120 vte~dL~ 126 (385)
.+++++.
T Consensus 361 LSe~E~~ 367 (450)
T KOG3869|consen 361 LSEAERA 367 (450)
T ss_pred ccHHHHH
Confidence 3444443
No 165
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.40 E-value=81 Score=30.76 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCC-------CCCccceEEEEeCCHHHHHHH----HHHhC--
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-------VNLPRGSGYVRFKTRADAEKA----QLYMD-- 171 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~-------tg~srG~aFVeF~~~e~A~~A----l~~ln-- 171 (385)
.-..+.|.+.|+...++-..+-..|-+||+|+.|.++.+.. ..+......+-|-+.+.+-.- ++.|.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34467888999998888888888899999999999987651 123345677888887775432 22222
Q ss_pred CCeeCCeEeEEEeehh
Q 016658 172 GFHRLQSLLQLLQREI 187 (385)
Q Consensus 172 g~~l~Gr~I~V~~a~~ 187 (385)
.+.+....+.|.+..-
T Consensus 92 K~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSL 107 (309)
T ss_pred HHhcCCcceeEEEEEE
Confidence 1345666677666553
No 166
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.63 E-value=82 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=15.8
Q ss_pred hHHHHHhccCCceEEEEEe
Q 016658 123 GHLREIFSNFGEVVDVELV 141 (385)
Q Consensus 123 ~dL~~~F~~~G~I~~v~i~ 141 (385)
.+|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999876653
No 167
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=30.91 E-value=31 Score=29.77 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.++|.+|+++|.+.
T Consensus 37 lfVgnL~~~~te~~L~~~F~~~ 58 (144)
T PLN03134 37 LFIGGLSWGTDDASLRDAFAHF 58 (144)
T ss_pred EEEeCCCCCCCHHHHHHHHhcC
Confidence 4447999999999999999875
No 168
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=30.79 E-value=93 Score=32.30 Aligned_cols=46 Identities=26% Similarity=0.262 Sum_probs=27.8
Q ss_pred cCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 016658 118 RNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170 (385)
Q Consensus 118 ~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l 170 (385)
....++....+|+.+|.++...+... .-|+-.|.|. +.|..+|..+
T Consensus 207 ks~~s~~r~k~fee~g~~~r~el~p~-----~hg~~~vv~~--enan~~m~s~ 252 (526)
T KOG2135|consen 207 KSRNSENRRKFFEEFGVLERGELCPT-----HHGCVPVVSK--ENANKTMKSE 252 (526)
T ss_pred cccccHHhhhhhHhhceeeecccccc-----ccccceeEee--ccccccccCC
Confidence 34556777888999998766655432 2345555554 5555555444
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.26 E-value=48 Score=32.03 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=43.2
Q ss_pred CCcceeeeccCCcC------------CChhHHHHHhccCCceEEEEEee-c----CCCCCc-----cceEE---------
Q 016658 106 NDSLVLYIDSLSRN------------VNEGHLREIFSNFGEVVDVELVM-D----RAVNLP-----RGSGY--------- 154 (385)
Q Consensus 106 ~~~~~vfVgnLp~~------------vte~dL~~~F~~~G~I~~v~i~~-d----~~tg~s-----rG~aF--------- 154 (385)
....+||+.+||.. .++..|...|..||.|..|.|+. | ..+|+. .||+|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 33557888877742 34667899999999999988764 2 223444 34432
Q ss_pred EEeCCHHHHHHHHHHhCCCee
Q 016658 155 VRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 155 VeF~~~e~A~~Al~~lng~~l 175 (385)
|.|........||..|.|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 333333444557777777554
No 170
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=1.1e+02 Score=31.29 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=28.2
Q ss_pred CCCcceeeeccCCcC-CChhHHHHHhccC----CceEEEEEe
Q 016658 105 ENDSLVLYIDSLSRN-VNEGHLREIFSNF----GEVVDVELV 141 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~-vte~dL~~~F~~~----G~I~~v~i~ 141 (385)
.....+|-|-||.|+ +...+|..+|+.| |.|..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 456778999999986 7778999888876 567766654
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.59 E-value=1.3e+02 Score=23.93 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=31.9
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeC
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFK 158 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~ 158 (385)
...-|||||++..+-|.-...+.+..+.-.-+ |+.... ..-||+|-.+.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~--neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDN--NEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccC--CCCCEEEEEeC
Confidence 35569999999998877666666654433333 333322 26789998874
No 172
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.88 E-value=89 Score=31.50 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=47.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCc-eEEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGE-VVDVELVMDRAV--NLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~~d~~t--g~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
-.+|.|.+||...++++|.+....|-. +....+...... ..-.+.|||.|...++...-...++|+.|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457889999999999998877766532 222222211100 122578999999999988888888998763
No 173
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=22.66 E-value=56 Score=29.63 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=50.9
Q ss_pred ceeeeccCCcCCChh-----HHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCe-EeEE
Q 016658 109 LVLYIDSLSRNVNEG-----HLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQS-LLQL 182 (385)
Q Consensus 109 ~~vfVgnLp~~vte~-----dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr-~I~V 182 (385)
+++++.++...+-.+ ....+|.+|-+....+++ ++.++--|.|.+++.|..|...+++..|.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 456667776543322 234667776665555554 2344667889999999999999999999988 7776
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
-++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 666554
No 174
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.65 E-value=21 Score=37.60 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=51.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
.+++|+.|+++.++-.+|..++..+--+..+.+-....-..-.-+++|+|.---....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 5789999999999999999999888666655543322223345578899987677777888888876543
No 175
>COG3860 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=52 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCCCccc---ccCCCCch----hHHHHHhhhhccccceEEe-cCC
Q 016658 340 LVQDLFHQGEGEGHLQ---DVGDHHPT----LHHLVRAGYLEGYQGVVVL-KGL 385 (385)
Q Consensus 340 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~ 385 (385)
++.-.|++|+.-+--+ =.++.||. -|.||+.|+|.+.+|+-=+ |+|
T Consensus 36 ~ll~~fe~~r~YsEkeVN~ii~ryh~DyaTvRReli~~~fm~Reng~Yw~pke~ 89 (89)
T COG3860 36 HLLKNFENERQYSEKEVNLIIKRYHPDYATVRRELIEYGFMDRENGAYWRPKET 89 (89)
T ss_pred HHHhhcccccccCHHHHHHHHHHhCchHHHHHHHHHHcchhhhccCceeccCCC
Confidence 3444555665543211 13556664 6789999999999997533 543
Done!