Query 016658
Match_columns 385
No_of_seqs 423 out of 2741
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:16:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 2.1E-20 7.2E-25 151.4 10.8 83 105-187 16-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 1.5E-19 5.3E-24 149.1 12.9 87 106-192 4-90 (110)
3 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.4E-19 2.5E-23 137.6 10.9 84 105-188 3-86 (87)
4 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.8E-23 144.0 11.5 85 105-190 22-106 (114)
5 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9.5E-19 3.2E-23 136.4 10.3 82 105-186 4-85 (85)
6 2cqc_A Arginine/serine-rich sp 99.8 1.7E-18 5.7E-23 137.8 11.8 83 105-187 12-94 (95)
7 1wel_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 146.8 10.7 97 106-203 23-119 (124)
8 2e5h_A Zinc finger CCHC-type a 99.8 2E-18 6.8E-23 137.2 11.9 82 105-186 13-94 (94)
9 3ns6_A Eukaryotic translation 99.8 5.4E-19 1.8E-23 143.0 8.6 85 106-190 4-95 (100)
10 2dgo_A Cytotoxic granule-assoc 99.8 5.2E-18 1.8E-22 140.1 14.6 85 104-188 11-95 (115)
11 2la6_A RNA-binding protein FUS 99.8 1.2E-18 4.1E-23 140.2 10.5 83 104-186 9-99 (99)
12 2cq0_A Eukaryotic translation 99.8 1.8E-18 6.2E-23 140.0 11.6 84 105-188 12-95 (103)
13 3md1_A Nuclear and cytoplasmic 99.8 1.5E-18 5.2E-23 134.6 10.5 81 108-188 1-81 (83)
14 2khc_A Testis-specific RNP-typ 99.8 2.6E-18 8.9E-23 142.5 12.5 84 103-186 35-118 (118)
15 2dnz_A Probable RNA-binding pr 99.8 1.3E-18 4.3E-23 138.7 10.1 83 106-188 3-85 (95)
16 3ulh_A THO complex subunit 4; 99.8 2.3E-18 7.8E-23 140.3 11.4 81 105-186 26-106 (107)
17 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.5E-23 140.7 10.4 84 105-188 12-95 (105)
18 4f02_A Polyadenylate-binding p 99.8 4.5E-18 1.5E-22 155.6 14.3 116 105-262 12-127 (213)
19 2lkz_A RNA-binding protein 5; 99.8 6E-19 2E-23 141.9 7.4 82 106-187 7-94 (95)
20 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-18 7.5E-23 142.5 10.9 85 104-188 21-105 (115)
21 2dnm_A SRP46 splicing factor; 99.8 1.4E-18 4.8E-23 140.7 9.5 84 105-188 10-93 (103)
22 3p5t_L Cleavage and polyadenyl 99.8 3.3E-19 1.1E-23 141.2 5.7 81 109-189 2-84 (90)
23 2lxi_A RNA-binding protein 10; 99.8 2.4E-19 8.1E-24 142.8 4.8 81 108-188 1-83 (91)
24 3n9u_C Cleavage and polyadenyl 99.8 3.9E-18 1.3E-22 149.4 12.6 87 107-193 54-142 (156)
25 1p27_B RNA-binding protein 8A; 99.8 2.3E-18 7.7E-23 140.1 10.2 84 105-188 20-103 (106)
26 2dgs_A DAZ-associated protein 99.8 2.7E-18 9.3E-23 138.0 10.5 83 105-188 7-89 (99)
27 2x1f_A MRNA 3'-END-processing 99.8 2.3E-18 7.7E-23 137.8 9.9 83 108-190 2-84 (96)
28 1whw_A Hypothetical protein ri 99.8 2.2E-18 7.5E-23 138.4 9.8 84 105-188 5-88 (99)
29 2do4_A Squamous cell carcinoma 99.8 4.6E-18 1.6E-22 136.9 11.1 83 105-188 14-96 (100)
30 2cph_A RNA binding motif prote 99.8 3.6E-18 1.2E-22 139.0 10.5 85 104-188 11-97 (107)
31 2dng_A Eukaryotic translation 99.8 5.5E-18 1.9E-22 137.3 11.4 83 104-188 11-93 (103)
32 1wi8_A EIF-4B, eukaryotic tran 99.7 4.5E-18 1.5E-22 138.1 10.7 82 105-188 12-94 (104)
33 1oo0_B CG8781-PA, drosophila Y 99.7 4.2E-18 1.4E-22 139.5 10.5 84 105-188 23-106 (110)
34 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.6E-18 8.7E-23 138.8 8.9 83 106-188 10-92 (102)
35 2kxn_B Transformer-2 protein h 99.7 2.3E-18 7.9E-23 146.0 9.0 84 105-188 43-126 (129)
36 2jrs_A RNA-binding protein 39; 99.7 4.1E-18 1.4E-22 139.9 10.2 86 103-188 21-106 (108)
37 2cpf_A RNA binding motif prote 99.7 3.1E-18 1.1E-22 137.3 9.3 83 106-188 3-88 (98)
38 2cqd_A RNA-binding region cont 99.7 1.5E-17 5.2E-22 137.6 13.7 83 105-188 14-96 (116)
39 4f25_A Polyadenylate-binding p 99.7 4.3E-18 1.5E-22 141.2 10.3 79 108-188 5-83 (115)
40 2dnh_A Bruno-like 5, RNA bindi 99.7 5.6E-18 1.9E-22 137.5 10.8 83 105-188 12-97 (105)
41 1x4h_A RNA-binding protein 28; 99.7 5.1E-18 1.7E-22 139.0 10.4 84 105-188 12-101 (111)
42 1x5t_A Splicing factor 3B subu 99.7 2.2E-18 7.5E-23 137.5 8.0 83 106-188 3-86 (96)
43 1x5s_A Cold-inducible RNA-bind 99.7 2.2E-18 7.7E-23 139.1 8.1 84 105-188 9-92 (102)
44 2cpe_A RNA-binding protein EWS 99.7 3.7E-18 1.3E-22 140.5 9.6 84 105-188 12-103 (113)
45 2d9p_A Polyadenylate-binding p 99.7 5.9E-18 2E-22 137.0 10.6 83 104-188 11-93 (103)
46 3s7r_A Heterogeneous nuclear r 99.7 7.1E-18 2.4E-22 132.2 10.6 80 105-185 8-87 (87)
47 2ywk_A Putative RNA-binding pr 99.7 5.8E-18 2E-22 134.8 10.2 81 105-186 13-93 (95)
48 2div_A TRNA selenocysteine ass 99.7 3.6E-18 1.2E-22 137.1 8.9 84 105-188 6-94 (99)
49 2dgp_A Bruno-like 4, RNA bindi 99.7 3.1E-18 1.1E-22 139.2 8.6 84 105-188 10-96 (106)
50 1u6f_A Tcubp1, RNA-binding pro 99.7 9.9E-18 3.4E-22 143.0 11.9 85 104-188 38-122 (139)
51 3ucg_A Polyadenylate-binding p 99.7 6.8E-18 2.3E-22 132.6 9.9 81 107-188 5-85 (89)
52 2do0_A HnRNP M, heterogeneous 99.7 3.2E-17 1.1E-21 134.9 14.5 83 105-188 12-94 (114)
53 1s79_A Lupus LA protein; RRM, 99.7 7E-18 2.4E-22 137.6 10.1 84 105-190 8-91 (103)
54 4a8x_A RNA-binding protein wit 99.7 6.1E-18 2.1E-22 132.5 9.4 82 107-188 3-85 (88)
55 2cqp_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 136.5 8.6 82 106-187 13-94 (98)
56 1x4e_A RNA binding motif, sing 99.7 1.3E-18 4.4E-23 135.9 5.3 81 106-186 3-83 (85)
57 2fy1_A RNA-binding motif prote 99.7 8.6E-18 3E-22 139.7 10.3 82 106-188 5-86 (116)
58 3ex7_B RNA-binding protein 8A; 99.7 6.8E-18 2.3E-22 141.6 9.7 85 104-188 18-102 (126)
59 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5.2E-22 138.6 11.7 83 105-189 14-99 (118)
60 1p1t_A Cleavage stimulation fa 99.7 3.4E-18 1.2E-22 138.4 7.4 86 106-191 6-91 (104)
61 2cq3_A RNA-binding protein 9; 99.7 2.6E-17 9E-22 133.1 12.2 82 105-188 12-93 (103)
62 2ek1_A RNA-binding protein 12; 99.7 4.5E-18 1.5E-22 135.4 7.4 80 107-186 14-93 (95)
63 2f3j_A RNA and export factor b 99.7 4.4E-17 1.5E-21 145.5 14.6 84 105-189 85-168 (177)
64 2dgx_A KIAA0430 protein; RRM d 99.7 1.4E-17 4.7E-22 133.5 9.9 81 105-188 6-90 (96)
65 2cpy_A RNA-binding protein 12; 99.7 2E-17 6.8E-22 136.8 11.1 84 105-190 12-96 (114)
66 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-17 6.9E-22 144.0 11.7 85 104-188 35-119 (156)
67 2dh8_A DAZ-associated protein 99.7 9.8E-18 3.4E-22 136.2 9.1 83 105-188 13-95 (105)
68 1x4b_A Heterogeneous nuclear r 99.7 1E-17 3.5E-22 138.6 9.2 83 105-188 24-106 (116)
69 2mss_A Protein (musashi1); RNA 99.7 4.1E-18 1.4E-22 129.9 6.2 75 110-185 1-75 (75)
70 2dhg_A TRNA selenocysteine ass 99.7 6.7E-18 2.3E-22 136.8 7.8 83 105-188 6-90 (104)
71 2cqg_A TDP-43, TAR DNA-binding 99.7 3.6E-17 1.2E-21 132.3 12.0 83 104-188 11-93 (103)
72 1l3k_A Heterogeneous nuclear r 99.7 5.1E-17 1.8E-21 145.0 14.1 119 105-262 10-128 (196)
73 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-17 5.4E-22 131.5 9.3 82 105-188 5-86 (92)
74 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.6E-17 1.2E-21 139.2 12.2 81 105-185 60-140 (140)
75 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.4E-17 1.2E-21 132.5 11.4 82 105-188 12-93 (103)
76 2wbr_A GW182, gawky, LD47780P; 99.7 2E-17 6.8E-22 130.4 9.2 77 107-189 6-82 (89)
77 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.8E-18 2.3E-22 129.0 6.4 76 109-185 1-76 (77)
78 1b7f_A Protein (SXL-lethal pro 99.7 5.9E-17 2E-21 140.9 13.2 112 107-262 2-113 (168)
79 2m2b_A RNA-binding protein 10; 99.7 5.7E-18 2E-22 143.5 6.4 83 105-188 20-108 (131)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.9E-18 2.3E-22 136.3 6.6 83 103-187 14-97 (100)
81 1fxl_A Paraneoplastic encephal 99.7 7E-17 2.4E-21 139.9 13.4 111 108-262 2-112 (167)
82 2dgw_A Probable RNA-binding pr 99.7 3.2E-17 1.1E-21 129.7 10.1 81 105-188 7-87 (91)
83 2kt5_A RNA and export factor-b 99.7 7E-17 2.4E-21 135.2 12.7 83 105-188 32-114 (124)
84 2cpi_A CCR4-NOT transcription 99.7 2.6E-17 9E-22 135.4 9.9 83 106-188 13-101 (111)
85 1wg5_A Heterogeneous nuclear r 99.7 2.6E-17 9E-22 133.9 9.6 82 105-188 12-94 (104)
86 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.5E-22 135.9 8.8 83 103-187 24-106 (109)
87 2nlw_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 135.2 8.2 82 105-188 12-100 (105)
88 2rs2_A Musashi-1, RNA-binding 99.7 3E-17 1E-21 134.9 9.6 85 103-188 20-104 (109)
89 1x4a_A Splicing factor, argini 99.7 7.8E-17 2.7E-21 131.8 12.1 81 105-188 19-99 (109)
90 2hgl_A HNRPF protein, heteroge 99.7 1.9E-17 6.5E-22 141.8 8.8 83 105-189 41-126 (136)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5E-17 1.7E-21 143.1 11.3 85 105-189 69-153 (165)
92 2jwn_A Embryonic polyadenylate 99.7 3.4E-17 1.2E-21 136.9 9.6 82 106-188 34-115 (124)
93 1sjq_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 135.5 7.7 78 105-188 13-92 (105)
94 1x5o_A RNA binding motif, sing 99.7 1.2E-16 4E-21 131.7 12.6 82 105-187 22-111 (114)
95 2dis_A Unnamed protein product 99.7 2.1E-17 7.2E-22 135.0 7.8 83 106-188 6-92 (109)
96 2qfj_A FBP-interacting repress 99.7 7.3E-17 2.5E-21 146.2 12.2 125 105-262 25-149 (216)
97 2ki2_A SS-DNA binding protein 99.7 5.7E-18 2E-22 133.6 4.3 81 109-190 2-82 (90)
98 3q2s_C Cleavage and polyadenyl 99.7 2.9E-17 9.9E-22 152.6 9.7 84 107-190 67-152 (229)
99 2dnn_A RNA-binding protein 12; 99.7 6.8E-17 2.3E-21 133.2 10.4 80 106-188 14-93 (109)
100 2krb_A Eukaryotic translation 99.7 1.4E-17 4.6E-22 129.2 5.7 73 108-182 1-80 (81)
101 2cq1_A PTB-like protein L; RRM 99.7 1E-16 3.5E-21 130.3 11.1 78 105-188 12-91 (101)
102 2kn4_A Immunoglobulin G-bindin 99.7 5E-17 1.7E-21 141.5 10.0 84 105-188 67-150 (158)
103 2lmi_A GRSF-1, G-rich sequence 99.7 3.1E-17 1.1E-21 134.1 8.0 84 104-189 7-93 (107)
104 1wez_A HnRNP H', FTP-3, hetero 99.7 3.3E-17 1.1E-21 133.2 7.9 79 106-187 13-91 (102)
105 1x4c_A Splicing factor, argini 99.7 1.2E-16 3.9E-21 130.9 11.1 76 106-188 13-93 (108)
106 2fc9_A NCL protein; structure 99.7 8.8E-17 3E-21 129.6 10.0 80 105-188 12-91 (101)
107 2lea_A Serine/arginine-rich sp 99.7 1.9E-17 6.6E-22 141.4 6.3 84 105-188 44-127 (135)
108 2fc8_A NCL protein; structure 99.7 1.1E-16 3.8E-21 129.1 10.4 81 105-188 12-92 (102)
109 3nmr_A Cugbp ELAV-like family 99.7 2E-16 6.8E-21 138.3 12.5 113 107-262 2-119 (175)
110 3md3_A Nuclear and cytoplasmic 99.7 1.5E-16 5E-21 137.8 11.5 111 109-262 1-111 (166)
111 2cpx_A Hypothetical protein FL 99.7 2.9E-17 9.8E-22 135.4 6.7 85 104-188 21-105 (115)
112 3r27_A HnRNP L, heterogeneous 99.7 9.6E-17 3.3E-21 130.1 9.3 79 104-188 17-97 (100)
113 2jvr_A Nucleolar protein 3; RN 99.7 4.9E-17 1.7E-21 134.5 7.6 80 105-188 25-105 (111)
114 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-16 4.9E-21 131.3 10.5 83 105-190 5-87 (115)
115 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-17 3.7E-22 135.0 3.0 82 105-188 14-95 (101)
116 2ytc_A PRE-mRNA-splicing facto 99.7 2.2E-16 7.4E-21 123.0 10.4 76 105-186 9-85 (85)
117 2a3j_A U1 small nuclear ribonu 99.7 9.9E-17 3.4E-21 135.8 8.8 83 105-190 26-112 (127)
118 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-17 8E-22 125.5 4.3 75 110-185 1-75 (75)
119 2dnq_A RNA-binding protein 4B; 99.7 1.8E-16 6.2E-21 125.1 9.5 76 105-188 5-80 (90)
120 3tyt_A Heterogeneous nuclear r 99.7 2E-16 6.9E-21 144.4 11.0 77 107-188 3-80 (205)
121 2e5j_A Methenyltetrahydrofolat 99.7 1.6E-16 5.4E-21 127.3 8.9 79 105-188 16-94 (97)
122 2dha_A FLJ20171 protein; RRM d 99.7 1E-16 3.5E-21 135.0 8.0 83 106-190 21-107 (123)
123 2ad9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 133.3 8.8 78 105-188 28-107 (119)
124 1nu4_A U1A RNA binding domain; 99.7 8.1E-17 2.8E-21 128.6 7.0 83 105-190 5-91 (97)
125 2lcw_A RNA-binding protein FUS 99.5 5.6E-18 1.9E-22 140.3 0.0 86 105-190 4-97 (116)
126 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-16 3.7E-21 127.7 7.5 80 104-188 12-91 (96)
127 1x4f_A Matrin 3; structural ge 99.7 1.8E-16 6.1E-21 131.2 9.0 79 105-189 22-103 (112)
128 2la4_A Nuclear and cytoplasmic 99.7 1.3E-16 4.4E-21 128.6 7.8 77 105-187 24-100 (101)
129 1wex_A Hypothetical protein (r 99.7 1.9E-16 6.5E-21 129.4 8.9 77 106-188 13-91 (104)
130 2xnq_A Nuclear polyadenylated 99.7 3.8E-16 1.3E-20 125.5 10.2 77 103-187 17-94 (97)
131 2xs2_A Deleted in azoospermia- 99.7 1.2E-16 4E-21 129.1 7.2 81 105-188 6-86 (102)
132 2dgu_A Heterogeneous nuclear r 99.7 7.4E-16 2.5E-20 124.8 12.0 76 106-189 9-84 (103)
133 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-16 8E-21 129.4 9.0 79 102-188 25-103 (108)
134 2cjk_A Nuclear polyadenylated 99.7 2.6E-16 8.9E-21 136.8 9.8 110 107-262 2-111 (167)
135 1why_A Hypothetical protein ri 99.7 3.6E-16 1.2E-20 125.1 9.8 77 106-188 15-93 (97)
136 1x4d_A Matrin 3; structural ge 99.7 2.6E-16 8.7E-21 128.2 8.9 77 106-188 13-92 (102)
137 2cpj_A Non-POU domain-containi 99.7 2.3E-16 7.9E-21 126.7 8.5 78 105-188 12-89 (99)
138 1x4g_A Nucleolysin TIAR; struc 99.6 3.4E-16 1.1E-20 128.1 9.1 78 105-188 22-99 (109)
139 2dgt_A RNA-binding protein 30; 99.6 4.8E-16 1.7E-20 123.2 9.8 76 105-188 7-82 (92)
140 2dnp_A RNA-binding protein 14; 99.6 5.1E-16 1.7E-20 122.5 9.5 76 105-188 6-81 (90)
141 2j8a_A Histone-lysine N-methyl 99.6 4.6E-16 1.6E-20 130.8 9.5 82 109-190 3-98 (136)
142 3md3_A Nuclear and cytoplasmic 99.6 1E-15 3.5E-20 132.4 12.0 82 105-186 84-165 (166)
143 2hgm_A HNRPF protein, heteroge 99.6 2.4E-16 8.2E-21 133.2 7.7 81 105-188 39-121 (126)
144 1wf1_A RNA-binding protein RAL 99.6 9.8E-16 3.3E-20 125.5 10.9 76 105-188 24-100 (110)
145 3pgw_A U1-A; protein-RNA compl 99.6 1.8E-15 6E-20 143.4 13.9 82 105-189 6-91 (282)
146 1whx_A Hypothetical protein ri 99.6 3.3E-16 1.1E-20 129.1 7.6 77 106-188 8-84 (111)
147 2hvz_A Splicing factor, argini 99.6 1.7E-16 5.8E-21 127.9 5.5 75 109-188 1-75 (101)
148 3beg_B Splicing factor, argini 99.6 3.6E-16 1.2E-20 129.5 7.7 75 106-187 14-93 (115)
149 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-15 4.6E-20 122.2 10.7 77 104-188 11-89 (99)
150 2hgn_A Heterogeneous nuclear r 99.6 9.1E-17 3.1E-21 138.1 3.7 80 106-188 44-123 (139)
151 3pgw_S U1-70K; protein-RNA com 99.6 8.7E-16 3E-20 155.5 11.2 83 106-188 100-182 (437)
152 1x5p_A Negative elongation fac 99.6 2E-15 6.7E-20 120.9 10.6 76 105-188 12-87 (97)
153 2kvi_A Nuclear polyadenylated 99.6 5.2E-16 1.8E-20 124.1 7.2 76 105-188 7-83 (96)
154 2e44_A Insulin-like growth fac 99.6 8.7E-16 3E-20 122.4 8.5 79 106-188 13-92 (96)
155 1wg1_A KIAA1579 protein, homol 99.6 8.6E-16 2.9E-20 120.9 8.3 74 107-187 4-77 (88)
156 2g4b_A Splicing factor U2AF 65 99.6 1.7E-15 5.9E-20 132.3 10.9 80 106-185 92-171 (172)
157 3egn_A RNA-binding protein 40; 99.6 2.3E-16 7.7E-21 135.4 5.1 84 105-188 42-130 (143)
158 2cqh_A IGF-II mRNA-binding pro 99.6 4.8E-16 1.7E-20 123.3 6.6 76 106-188 6-83 (93)
159 2i2y_A Fusion protein consists 99.6 1.2E-15 4E-20 131.9 9.4 80 104-188 69-148 (150)
160 2e5g_A U6 snRNA-specific termi 99.6 1.2E-15 4E-20 121.5 8.6 76 106-187 6-81 (94)
161 2dnl_A Cytoplasmic polyadenyla 99.6 8.7E-16 3E-20 126.9 7.7 77 106-185 6-85 (114)
162 2adc_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 140.5 9.9 80 104-188 30-110 (229)
163 1fje_B Nucleolin RBD12, protei 99.6 3.1E-16 1.1E-20 137.7 5.3 115 104-262 9-123 (175)
164 2hzc_A Splicing factor U2AF 65 99.6 1.7E-15 5.8E-20 118.3 8.4 73 105-184 3-86 (87)
165 2qfj_A FBP-interacting repress 99.6 2.8E-15 9.5E-20 135.7 10.8 83 106-188 123-205 (216)
166 3smz_A Protein raver-1, ribonu 99.6 5.7E-15 1.9E-19 140.0 13.1 115 107-262 94-209 (284)
167 2cq2_A Hypothetical protein LO 99.6 1.6E-15 5.4E-20 125.8 7.7 76 106-187 23-105 (114)
168 4f02_A Polyadenylate-binding p 99.6 4.2E-15 1.4E-19 135.8 11.3 82 107-190 102-183 (213)
169 1sjr_A Polypyrimidine tract-bi 99.6 4.2E-15 1.4E-19 130.7 9.5 79 106-188 44-124 (164)
170 3d2w_A TAR DNA-binding protein 99.6 4.5E-15 1.6E-19 117.4 8.8 77 104-189 7-85 (89)
171 2yh0_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 131.9 10.4 84 105-188 111-194 (198)
172 2e5i_A Heterogeneous nuclear r 99.6 2E-14 6.9E-19 121.0 12.9 76 107-188 24-102 (124)
173 3zzy_A Polypyrimidine tract-bi 99.6 9.8E-15 3.3E-19 123.8 10.8 78 106-188 26-106 (130)
174 3sde_A Paraspeckle component 1 99.6 1E-14 3.4E-19 137.4 12.1 103 104-262 18-120 (261)
175 1b7f_A Protein (SXL-lethal pro 99.6 1E-14 3.5E-19 126.6 10.9 80 106-185 87-168 (168)
176 1l3k_A Heterogeneous nuclear r 99.6 8E-15 2.7E-19 130.7 10.4 84 106-190 102-185 (196)
177 1qm9_A Polypyrimidine tract-bi 99.6 2.7E-15 9.3E-20 134.6 7.1 76 108-188 3-79 (198)
178 2diu_A KIAA0430 protein; struc 99.6 4.7E-15 1.6E-19 118.1 7.4 73 108-190 9-86 (96)
179 2cjk_A Nuclear polyadenylated 99.6 2.5E-15 8.7E-20 130.5 6.2 80 107-187 86-165 (167)
180 2pe8_A Splicing factor 45; RRM 99.6 2.3E-14 8E-19 117.1 11.5 83 106-188 6-94 (105)
181 1fxl_A Paraneoplastic encephal 99.6 1.2E-14 4.2E-19 125.7 10.4 80 106-185 86-167 (167)
182 2yh0_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 126.2 13.4 125 107-262 3-138 (198)
183 2g4b_A Splicing factor U2AF 65 99.5 1.2E-14 4.3E-19 126.7 9.5 105 107-262 3-118 (172)
184 2bz2_A Negative elongation fac 99.5 8.4E-15 2.9E-19 122.6 7.9 76 105-188 36-111 (121)
185 3nmr_A Cugbp ELAV-like family 99.5 2E-14 6.7E-19 125.5 9.7 80 106-186 93-175 (175)
186 1fje_B Nucleolin RBD12, protei 99.5 3.6E-14 1.2E-18 124.4 10.1 78 105-187 96-173 (175)
187 2voo_A Lupus LA protein; RNA-b 99.5 3.3E-14 1.1E-18 128.6 9.8 81 107-189 108-188 (193)
188 1wf0_A TDP-43, TAR DNA-binding 99.5 7.2E-15 2.5E-19 115.4 4.8 76 106-188 3-78 (88)
189 3smz_A Protein raver-1, ribonu 99.5 5.9E-14 2E-18 133.0 11.7 101 106-263 20-120 (284)
190 2ghp_A U4/U6 snRNA-associated 99.5 4E-14 1.4E-18 134.7 10.5 118 107-262 116-235 (292)
191 2ghp_A U4/U6 snRNA-associated 99.5 7E-14 2.4E-18 133.0 12.1 105 105-263 38-142 (292)
192 3u1l_A PRE-mRNA-splicing facto 99.5 8E-14 2.7E-18 130.0 8.4 80 105-190 131-231 (240)
193 3pgw_A U1-A; protein-RNA compl 99.4 2.6E-13 9E-18 128.3 10.6 78 105-187 204-282 (282)
194 2dit_A HIV TAT specific factor 99.4 6.4E-13 2.2E-17 109.3 10.4 79 106-188 13-102 (112)
195 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.8E-18 112.2 5.2 72 113-185 20-103 (104)
196 3v4m_A Splicing factor U2AF 65 99.4 1E-12 3.5E-17 107.3 9.9 82 107-188 4-97 (105)
197 3tyt_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 122.3 7.2 71 106-178 121-193 (205)
198 3ue2_A Poly(U)-binding-splicin 99.4 1.6E-12 5.6E-17 108.4 9.9 82 107-188 19-109 (118)
199 3sde_A Paraspeckle component 1 99.4 1.2E-12 4.3E-17 123.0 9.5 81 107-188 95-179 (261)
200 2adc_A Polypyrimidine tract-bi 99.4 1.4E-12 4.6E-17 120.3 9.1 77 106-187 149-227 (229)
201 1qm9_A Polypyrimidine tract-bi 99.3 8.3E-13 2.8E-17 118.3 6.6 77 106-187 118-196 (198)
202 3tht_A Alkylated DNA repair pr 99.3 3E-12 1E-16 125.4 8.4 77 104-186 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.2E-11 4.1E-16 100.1 7.3 64 118-188 27-90 (100)
204 3s6e_A RNA-binding protein 39; 99.2 8.6E-11 2.9E-15 97.3 9.5 78 107-188 6-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.0 6.2E-10 2.1E-14 92.9 9.2 80 104-189 14-97 (121)
206 2dnr_A Synaptojanin-1; RRM dom 98.9 2E-09 6.8E-14 84.9 7.7 73 106-187 5-85 (91)
207 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4.2E-13 93.1 8.4 69 120-188 141-213 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 7.9E-09 2.7E-13 81.9 5.3 72 105-185 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.2 7.4E-06 2.5E-10 66.3 9.6 79 106-190 19-102 (117)
210 2kn4_A Immunoglobulin G-bindin 97.3 0.00019 6.5E-09 61.3 4.9 37 137-175 2-38 (158)
211 1wey_A Calcipressin 1; structu 97.2 0.00084 2.9E-08 53.9 6.8 73 108-186 5-82 (104)
212 2i2y_A Fusion protein consists 96.8 0.00073 2.5E-08 57.3 3.6 87 147-262 10-97 (150)
213 1uw4_A UPF3X; nonsense mediate 96.6 0.0095 3.2E-07 46.7 8.2 69 109-177 2-72 (91)
214 2dhx_A Poly (ADP-ribose) polym 96.6 0.011 3.8E-07 47.2 8.6 70 107-185 7-81 (104)
215 1wwh_A Nucleoporin 35, nucleop 96.3 0.018 6.2E-07 47.3 8.9 74 105-186 21-95 (119)
216 1whv_A Poly(A)-specific ribonu 96.1 0.011 3.8E-07 46.7 6.4 54 109-171 17-70 (100)
217 3ctr_A Poly(A)-specific ribonu 95.6 0.016 5.4E-07 46.0 5.2 54 109-171 7-60 (101)
218 3p3d_A Nucleoporin 53; structu 95.2 0.023 7.8E-07 47.4 5.1 79 108-188 7-99 (132)
219 2l08_A Regulator of nonsense t 95.0 0.048 1.6E-06 43.1 6.2 70 108-177 9-80 (97)
220 3pq1_A Poly(A) RNA polymerase; 94.8 0.012 4.2E-07 59.3 3.0 56 107-168 52-107 (464)
221 1rk8_A CG8781-PA, CG8781-PA pr 78.2 1 3.6E-05 38.1 2.4 30 155-184 11-42 (165)
222 3d45_A Poly(A)-specific ribonu 76.7 4.6 0.00016 41.0 7.2 56 108-172 440-495 (507)
223 2g0c_A ATP-dependent RNA helic 74.0 7 0.00024 28.5 5.8 68 110-186 2-75 (76)
224 2lea_A Serine/arginine-rich sp 73.3 2.1 7.3E-05 35.0 3.0 26 152-177 6-31 (135)
225 2jvr_A Nucleolar protein 3; RN 57.7 3.3 0.00011 32.9 1.1 22 241-262 31-52 (111)
226 1x4c_A Splicing factor, argini 50.6 6.2 0.00021 30.5 1.7 20 243-262 20-39 (108)
227 2dnn_A RNA-binding protein 12; 50.5 8.4 0.00029 30.3 2.4 21 242-262 20-40 (109)
228 1wez_A HnRNP H', FTP-3, hetero 49.5 7.6 0.00026 29.9 2.0 20 243-262 20-39 (102)
229 3p5t_L Cleavage and polyadenyl 49.0 4.2 0.00014 30.3 0.4 22 241-262 4-25 (90)
230 3n9u_C Cleavage and polyadenyl 48.0 3.1 0.00011 35.1 -0.5 22 241-262 58-79 (156)
231 4f25_A Polyadenylate-binding p 46.9 5.1 0.00017 31.5 0.6 19 106-124 95-113 (115)
232 2hgn_A Heterogeneous nuclear r 46.1 11 0.00039 31.0 2.7 22 241-262 49-70 (139)
233 1wg5_A Heterogeneous nuclear r 45.5 8.6 0.0003 29.5 1.7 20 243-262 20-39 (104)
234 2dha_A FLJ20171 protein; RRM d 44.2 9.7 0.00033 30.7 1.9 21 242-262 27-47 (123)
235 3q2s_C Cleavage and polyadenyl 42.9 6.9 0.00024 35.1 0.9 22 241-262 71-92 (229)
236 2hgm_A HNRPF protein, heteroge 37.9 13 0.00046 30.1 1.8 21 242-262 46-66 (126)
237 2lmi_A GRSF-1, G-rich sequence 35.6 13 0.00046 28.5 1.4 20 243-262 16-35 (107)
238 2hgl_A HNRPF protein, heteroge 34.0 16 0.00056 29.9 1.7 20 243-262 49-68 (136)
239 1wel_A RNA-binding protein 12; 33.0 17 0.0006 28.6 1.7 21 242-262 29-49 (124)
240 2dgv_A HnRNP M, heterogeneous 32.9 20 0.00067 26.3 1.9 20 243-262 13-32 (92)
241 2lkz_A RNA-binding protein 5; 32.3 10 0.00034 29.0 0.1 22 241-262 12-33 (95)
242 1ug0_A Splicing factor 4; SURP 31.4 12 0.00043 28.5 0.5 39 313-351 17-56 (88)
243 1wg1_A KIAA1579 protein, homol 30.8 21 0.00072 26.1 1.8 20 243-262 10-29 (88)
244 2dgw_A Probable RNA-binding pr 30.7 22 0.00074 26.1 1.8 20 243-262 15-34 (91)
245 4fxv_A ELAV-like protein 1; RN 30.7 21 0.00073 27.1 1.8 21 242-262 23-43 (99)
246 3s7r_A Heterogeneous nuclear r 29.7 23 0.00078 25.7 1.8 20 243-262 16-35 (87)
247 2cqp_A RNA-binding protein 12; 29.5 22 0.00077 26.4 1.7 21 242-262 19-39 (98)
248 2cpy_A RNA-binding protein 12; 29.1 22 0.00077 27.5 1.7 21 242-262 19-39 (114)
249 2db1_A Heterogeneous nuclear r 28.2 24 0.00081 27.7 1.7 21 242-262 21-41 (118)
250 2ek1_A RNA-binding protein 12; 28.1 25 0.00086 25.9 1.8 22 241-262 18-39 (95)
251 4e8u_A Putative uncharacterize 27.9 1.5E+02 0.0052 25.4 6.8 56 110-168 14-81 (172)
252 3ts2_A Protein LIN-28 homolog 27.8 17 0.00058 30.5 0.8 28 123-158 2-29 (148)
253 3ucg_A Polyadenylate-binding p 26.5 27 0.00091 25.3 1.7 21 242-262 10-30 (89)
254 2cpd_A Apobec-1 stimulating pr 26.4 86 0.003 23.1 4.7 20 243-262 20-39 (99)
255 3s8s_A Histone-lysine N-methyl 26.2 27 0.00094 27.1 1.8 22 241-262 9-30 (110)
256 2e5j_A Methenyltetrahydrofolat 25.8 46 0.0016 24.6 3.0 22 241-262 22-43 (97)
257 3d2w_A TAR DNA-binding protein 25.4 33 0.0011 25.3 2.0 22 241-262 14-35 (89)
258 2e5g_A U6 snRNA-specific termi 25.3 31 0.0011 25.5 1.8 21 242-262 12-32 (94)
259 1wi8_A EIF-4B, eukaryotic tran 25.3 29 0.001 26.1 1.7 22 241-262 18-39 (104)
260 2dng_A Eukaryotic translation 25.2 29 0.001 26.1 1.7 21 242-262 19-39 (103)
261 1x4o_A Splicing factor 4; stru 25.1 15 0.00051 27.3 -0.0 37 313-349 7-44 (78)
262 2dh8_A DAZ-associated protein 25.0 34 0.0012 25.8 2.1 22 241-262 19-40 (105)
263 2fc9_A NCL protein; structure 24.9 28 0.00095 26.0 1.5 20 243-262 20-39 (101)
264 1wf0_A TDP-43, TAR DNA-binding 24.5 30 0.001 25.1 1.6 22 241-262 8-29 (88)
265 2ywk_A Putative RNA-binding pr 23.8 33 0.0011 25.2 1.7 19 244-262 22-40 (95)
266 2cpe_A RNA-binding protein EWS 23.7 85 0.0029 23.7 4.3 20 243-262 20-39 (113)
267 2do0_A HnRNP M, heterogeneous 23.5 33 0.0011 26.2 1.8 20 243-262 20-39 (114)
268 1x4a_A Splicing factor, argini 22.8 34 0.0012 26.0 1.7 20 243-262 27-46 (109)
269 2fc8_A NCL protein; structure 22.6 29 0.001 25.9 1.2 19 243-261 20-38 (102)
270 3ulh_A THO complex subunit 4; 22.4 33 0.0011 25.9 1.5 21 242-262 33-53 (107)
271 1x5u_A Splicing factor 3B subu 21.7 36 0.0012 25.6 1.6 19 244-262 21-39 (105)
272 1fj7_A Nucleolin RBD1, protein 21.7 35 0.0012 25.4 1.6 22 241-262 20-41 (101)
273 2cqg_A TDP-43, TAR DNA-binding 21.7 37 0.0013 25.4 1.7 20 243-262 20-39 (103)
274 2khc_A Testis-specific RNP-typ 21.4 2.4E+02 0.0084 21.2 6.7 21 242-262 44-64 (118)
275 2cq3_A RNA-binding protein 9; 21.3 40 0.0014 25.2 1.8 20 243-262 20-39 (103)
276 4bby_A Alkyldihydroxyacetoneph 21.1 1.2E+02 0.0043 31.3 6.1 56 114-170 349-408 (658)
277 3fry_A Probable copper-exporti 20.8 2E+02 0.007 19.5 5.5 56 108-170 6-61 (73)
278 2dnm_A SRP46 splicing factor; 20.6 42 0.0014 25.1 1.8 20 243-262 18-37 (103)
279 2cq4_A RNA binding motif prote 20.6 41 0.0014 25.7 1.8 20 243-262 30-49 (114)
280 2cpz_A CUG triplet repeat RNA- 20.2 41 0.0014 25.8 1.7 20 243-262 30-49 (115)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=151.37 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=79.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..++++|||+|||+++|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 016658 185 REI 187 (385)
Q Consensus 185 a~~ 187 (385)
++.
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 863
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=149.14 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=81.7
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+||++.+|+++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+.|||..|+|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHH
Q 016658 186 EIVRELI 192 (385)
Q Consensus 186 ~~~~~~~ 192 (385)
.......
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 7765543
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=137.61 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=77.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8753
No 4
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=144.03 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
++....
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 887654
No 5
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=9.5e-19 Score=136.37 Aligned_cols=82 Identities=23% Similarity=0.403 Sum_probs=78.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred eh
Q 016658 185 RE 186 (385)
Q Consensus 185 a~ 186 (385)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 6
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=137.81 Aligned_cols=83 Identities=27% Similarity=0.383 Sum_probs=78.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehh
Q 016658 185 REI 187 (385)
Q Consensus 185 a~~ 187 (385)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 763
No 7
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-19 Score=146.78 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=86.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|++||+ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999987777777889999999999999999999999 9999999999999999
Q ss_pred hhhHHHHHHHHHHHhhCC
Q 016658 186 EIVRELIMSVLILRRMGQ 203 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~ 203 (385)
..........++.+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~ 119 (124)
T 1wel_A 102 TKKGMLEKIDMIRKRLQS 119 (124)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhhhhcc
Confidence 988766666666666643
No 8
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=137.25 Aligned_cols=82 Identities=17% Similarity=0.365 Sum_probs=77.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eh
Q 016658 185 RE 186 (385)
Q Consensus 185 a~ 186 (385)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=5.4e-19 Score=143.03 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCcceeeeccCCc------CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC-e
Q 016658 106 NDSLVLYIDSLSR------NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ-S 178 (385)
Q Consensus 106 ~~~~~vfVgnLp~------~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G-r 178 (385)
...++|||+|||+ .+++++|+++|++||.|..|.|+.++.||+++|||||+|.+.++|++||+.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EeEEEeehhhHH
Q 016658 179 LLQLLQREIVRE 190 (385)
Q Consensus 179 ~I~V~~a~~~~~ 190 (385)
.|.|.++.....
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999999987654
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.2e-18 Score=140.08 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=80.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98875
No 11
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=140.19 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=78.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD--------VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
+....++|||+|||+++|+++|+++|++||.|.. +.|+.++.+|+++|||||+|.+.++|++|++.|||..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4556889999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCeEeEEEeeh
Q 016658 176 LQSLLQLLQRE 186 (385)
Q Consensus 176 ~Gr~I~V~~a~ 186 (385)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=140.04 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=80.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.5e-18 Score=134.57 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=77.4
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
+++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|.+++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 14
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.6e-18 Score=142.52 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=78.7
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
....+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeeh
Q 016658 183 LQRE 186 (385)
Q Consensus 183 ~~a~ 186 (385)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=138.66 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=79.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 16
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.3e-18 Score=140.28 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999998
Q ss_pred eh
Q 016658 185 RE 186 (385)
Q Consensus 185 a~ 186 (385)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=140.72 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=80.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8775
No 18
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=4.5e-18 Score=155.57 Aligned_cols=116 Identities=23% Similarity=0.237 Sum_probs=98.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.++.|++++|||||+|.+.++|++||+.+|+..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+......... ....++ +.|||+.+++++|+++|.+.
T Consensus 92 ~~~~~~~~~~--------------------------------------~~~~l~----v~nl~~~~t~~~l~~~F~~~ 127 (213)
T 4f02_A 92 SQRDPSLRKS--------------------------------------GVGNIF----IKNLDKSIDNKALYDTFSAF 127 (213)
T ss_dssp CCCCTHHHHH--------------------------------------CTTEEE----EESCCTTCCHHHHHHHHGGG
T ss_pred cccccccccc--------------------------------------ccccce----ECCcccccHHHHHHHHHhhc
Confidence 7654321110 011233 46999999999999999865
No 19
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=6e-19 Score=141.95 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCc--eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC----eeCCeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGE--VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF----HRLQSL 179 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~--I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~----~l~Gr~ 179 (385)
..-.+|||+|||+.+|+++|+++|++||. |.+|.++.|+.||+++|||||+|.+.++|++|++.|||. .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44678999999999999999999999995 679999999999999999999999999999999999997 589999
Q ss_pred eEEEeehh
Q 016658 180 LQLLQREI 187 (385)
Q Consensus 180 I~V~~a~~ 187 (385)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=2.2e-18 Score=142.47 Aligned_cols=85 Identities=24% Similarity=0.414 Sum_probs=80.2
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpz_A 101 LKRSK 105 (115)
T ss_dssp CCCCS
T ss_pred EcCCC
Confidence 98764
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=140.72 Aligned_cols=84 Identities=29% Similarity=0.435 Sum_probs=80.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8864
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=3.3e-19 Score=141.19 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=72.8
Q ss_pred ceeeeccCCcCCChhHHHHHhccCC--ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFG--EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
.+|||+|||+++|+++|+++|++|| .|.++.|+.++.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred hhH
Q 016658 187 IVR 189 (385)
Q Consensus 187 ~~~ 189 (385)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-19 Score=142.79 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=75.4
Q ss_pred cceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEee
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM-DGFHRLQSLLQLLQR 185 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l-ng~~l~Gr~I~V~~a 185 (385)
+++|||+|||+.+|+++|+++|++|| .|.+|.|+.++.||.++|||||+|.+.++|++||+.+ ++..++|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999987 456899999999988
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 24
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=149.41 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=80.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCC--ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFG--EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..++|||+|||+++|+++|+++|++|| .|..|.|+.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHH
Q 016658 185 REIVRELIM 193 (385)
Q Consensus 185 a~~~~~~~~ 193 (385)
+........
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 987655443
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=140.08 Aligned_cols=84 Identities=17% Similarity=0.348 Sum_probs=79.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8753
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=138.00 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=78.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+ ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4557899999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.3e-18 Score=137.80 Aligned_cols=83 Identities=18% Similarity=0.361 Sum_probs=79.4
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
+++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHH
Q 016658 188 VRE 190 (385)
Q Consensus 188 ~~~ 190 (385)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=138.41 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=80.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8875
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=136.92 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=78.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=138.99 Aligned_cols=85 Identities=27% Similarity=0.381 Sum_probs=79.9
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHHh-CCCeeCCeEeE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMD-RAVNLPRGSGYVRFKTRADAEKAQLYM-DGFHRLQSLLQ 181 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d-~~tg~srG~aFVeF~~~e~A~~Al~~l-ng~~l~Gr~I~ 181 (385)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|++||+.| ||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999998 788999999999999999999999999 99999999999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998764
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=5.5e-18 Score=137.27 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=78.0
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
+..+.++|||+|||+.+|+++|+++|++|| |..|.|+.++.+++++|||||+|.+.++|++|| .|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345578999999999999999999999997 999999999999999999999999999999999 899999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98764
No 32
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=138.05 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=77.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV-NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t-g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..+.++|||+|||+.+|+++|+++|++|| |..|.|+.++.+ ++++|||||+|.+.++|++|| .|||..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999988 999999999999999999999 899999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98764
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=4.2e-18 Score=139.53 Aligned_cols=84 Identities=20% Similarity=0.414 Sum_probs=79.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=138.79 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=79.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
+..
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=2.3e-18 Score=146.03 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=79.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 36
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=139.87 Aligned_cols=86 Identities=27% Similarity=0.453 Sum_probs=80.6
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 988653
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=137.27 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=78.1
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA---VNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~---tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999887 6799999999999999999999999999999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998764
No 38
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=137.59 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=78.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8764
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=4.3e-18 Score=141.16 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=74.0
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+++|+++|+++|++||.|.+|.|+.+. +.++|||||+|.+.++|++||+.|+|..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999986 45899999999999999999999999999999999998765
Q ss_pred h
Q 016658 188 V 188 (385)
Q Consensus 188 ~ 188 (385)
.
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=5.6e-18 Score=137.49 Aligned_cols=83 Identities=17% Similarity=0.326 Sum_probs=78.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC---eEeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ---SLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G---r~I~ 181 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 69999999999999999999999999999998 9999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++..
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 9998774
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=139.01 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=79.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC------CCeeCCe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD------GFHRLQS 178 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln------g~~l~Gr 178 (385)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|| |..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EeEEEeehhh
Q 016658 179 LLQLLQREIV 188 (385)
Q Consensus 179 ~I~V~~a~~~ 188 (385)
.|.|.++...
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=137.53 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDV-ELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
.+.++|||+|||+.+|+++|+++|++||.|..+ .|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8764
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=139.12 Aligned_cols=84 Identities=30% Similarity=0.462 Sum_probs=79.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8764
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=140.54 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=79.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVV--------DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~--------~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
..+.++|||+|||+.+|+++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|++||+.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEeEEEeehhh
Q 016658 177 QSLLQLLQREIV 188 (385)
Q Consensus 177 Gr~I~V~~a~~~ 188 (385)
|+.|+|.+++..
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998764
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=136.99 Aligned_cols=83 Identities=25% Similarity=0.419 Sum_probs=78.0
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456889999999999999999999999999999999988 79999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2d9p_A 89 LAQRK 93 (103)
T ss_dssp ECSSC
T ss_pred Eeccc
Confidence 98764
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=7.1e-18 Score=132.22 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=75.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++|++ +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999996 588999999999987
Q ss_pred e
Q 016658 185 R 185 (385)
Q Consensus 185 a 185 (385)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=134.77 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=76.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+++++|+++|++||.|..|.|+.++. ++++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45578999999999999999999999999999999999986 99999999999999999999999999999999999998
Q ss_pred eh
Q 016658 185 RE 186 (385)
Q Consensus 185 a~ 186 (385)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=137.12 Aligned_cols=84 Identities=23% Similarity=0.369 Sum_probs=79.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceE-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE----
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVV-DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL---- 179 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~-~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~---- 179 (385)
..+.++|||+|||+++|+++|+++|++||.|. .|.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred eEEEeehhh
Q 016658 180 LQLLQREIV 188 (385)
Q Consensus 180 I~V~~a~~~ 188 (385)
|+|.+++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999988653
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=3.1e-18 Score=139.24 Aligned_cols=84 Identities=23% Similarity=0.496 Sum_probs=79.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee---CCeEeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR---LQSLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l---~Gr~I~ 181 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++|++.|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.++...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9998764
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=9.9e-18 Score=142.99 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=80.6
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.....++|||+|||+++|+++|+++|+.||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98874
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=6.8e-18 Score=132.61 Aligned_cols=81 Identities=16% Similarity=0.336 Sum_probs=77.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+|||+.+|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+ .|||..|+|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3679999999999999999999999999999999999989999999999999999999999 899999999999999887
Q ss_pred hh
Q 016658 187 IV 188 (385)
Q Consensus 187 ~~ 188 (385)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=134.92 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=77.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++ +++++|||||+|.+.++|++||+.|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999999987 499999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8764
No 53
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7e-18 Score=137.57 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=78.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|++||+ ++|..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999987 9999999999999999999998 999999999999998
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
+.....
T Consensus 86 ~~~~~~ 91 (103)
T 1s79_A 86 KDDYFA 91 (103)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 877544
No 54
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=132.49 Aligned_cols=82 Identities=28% Similarity=0.394 Sum_probs=76.9
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNL-PRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~-srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..++|||+|||+++|+++|+++|++||.|..+.|+.+..++. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999988766 9999999999999999999999999999999999988
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.3e-18 Score=136.45 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+++|+++|+++|.+||.|..+.++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44689999999999999999999999999999989999999999999999999999999999999999999999999987
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 56
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=135.90 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=76.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999987754
Q ss_pred h
Q 016658 186 E 186 (385)
Q Consensus 186 ~ 186 (385)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=8.6e-18 Score=139.69 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=78.2
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
+..
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=6.8e-18 Score=141.59 Aligned_cols=85 Identities=16% Similarity=0.343 Sum_probs=80.3
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 98764
No 59
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=138.61 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCc---eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGE---VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ |||..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 445789999999999999999999999999 89999999987 9999999999999999999999 999999999999
Q ss_pred EEeehhhH
Q 016658 182 LLQREIVR 189 (385)
Q Consensus 182 V~~a~~~~ 189 (385)
|..+....
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-18 Score=138.42 Aligned_cols=86 Identities=22% Similarity=0.392 Sum_probs=81.0
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred hhhHHH
Q 016658 186 EIVREL 191 (385)
Q Consensus 186 ~~~~~~ 191 (385)
......
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876553
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=133.14 Aligned_cols=82 Identities=22% Similarity=0.434 Sum_probs=76.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8764
No 62
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=4.5e-18 Score=135.41 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=75.9
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.|||..|+|+.|+|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999765
No 63
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=4.4e-17 Score=145.53 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=79.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ehhhH
Q 016658 185 REIVR 189 (385)
Q Consensus 185 a~~~~ 189 (385)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87753
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=133.49 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=75.3
Q ss_pred CCCcceeeeccCCcCCChhHHH----HHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLR----EIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
....++|||+|||+++++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3457899999999999999999 99999999999999988765 8999999999999999999999999999999
Q ss_pred EEEeehhh
Q 016658 181 QLLQREIV 188 (385)
Q Consensus 181 ~V~~a~~~ 188 (385)
+|.+++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998653
No 65
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=136.85 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=78.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCce-EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEV-VDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I-~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..+.++|||+|||+++|+++|+++|+.||.| ..|.|+.++ +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457899999999999999999999999999 889999998 899999999999999999999986 9999999999999
Q ss_pred eehhhHH
Q 016658 184 QREIVRE 190 (385)
Q Consensus 184 ~a~~~~~ 190 (385)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2cpy_A 90 VVTLEDM 96 (114)
T ss_dssp EECHHHH
T ss_pred ECCHHHH
Confidence 9987654
No 66
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2e-17 Score=144.03 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=80.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|+|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99764
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.8e-18 Score=136.16 Aligned_cols=83 Identities=23% Similarity=0.313 Sum_probs=78.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45578999999999999999999999999999999999999999999999999999999999998 99999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8754
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=138.65 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=78.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999987 99999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=4.1e-18 Score=129.85 Aligned_cols=75 Identities=24% Similarity=0.402 Sum_probs=72.1
Q ss_pred eeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 110 ~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
+|||+|||+++|+++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|++|++ |||..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999864
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=136.80 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=78.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhcc-CCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCe-eCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSN-FGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFH-RLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~-~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~-l~Gr~I~V 182 (385)
..+.++|||+|||+++|+++|+++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|++|++.|||.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.++...
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 988664
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=132.31 Aligned_cols=83 Identities=23% Similarity=0.244 Sum_probs=77.3
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+++++|||||+|.+.++|++||+ ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999998 4789999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 89 ~a~~~ 93 (103)
T 2cqg_A 89 LPNSK 93 (103)
T ss_dssp CCCTT
T ss_pred ecCCC
Confidence 98764
No 72
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=5.1e-17 Score=145.01 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|++||+. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45688999999999999999999999999999999999999999999999999999999999975 99999999999998
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+........ +. ..-....++ +.|||..+++.+|+++|.+.
T Consensus 89 ~~~~~~~~~-----------------~~-----------------~~~~~~~l~----V~nLp~~~t~~~l~~~F~~~ 128 (196)
T 1l3k_A 89 AVSREDSQR-----------------PG-----------------AHLTVKKIF----VGGIKEDTEEHHLRDYFEQY 128 (196)
T ss_dssp CCC---------------------------------------------CCSEEE----EECCTTTCCHHHHHHHHTTT
T ss_pred ccCcccccc-----------------cc-----------------cCCCcceEE----EeCCCCCCCHHHHHHHHhcC
Confidence 876432100 00 000112233 47999999999999999865
No 73
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=1.6e-17 Score=131.48 Aligned_cols=82 Identities=18% Similarity=0.324 Sum_probs=76.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.+ +++++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 689999999999999999999999999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 74
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=139.16 Aligned_cols=81 Identities=23% Similarity=0.403 Sum_probs=76.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred e
Q 016658 185 R 185 (385)
Q Consensus 185 a 185 (385)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 75
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=132.51 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=76.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45578999999999999999999999999999999998864 3689999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8874
No 76
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2e-17 Score=130.44 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
.+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|+.|.|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999853 68999999999999999999999999999999999996
Q ss_pred hhH
Q 016658 187 IVR 189 (385)
Q Consensus 187 ~~~ 189 (385)
+..
T Consensus 80 e~~ 82 (89)
T 2wbr_A 80 ENE 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 77
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-18 Score=129.00 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=73.1
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
++|||+|||+++|+++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999876
No 78
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=5.9e-17 Score=140.90 Aligned_cols=112 Identities=16% Similarity=0.265 Sum_probs=97.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+.++|||+|||+++|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 187 IVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 187 ~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.... . .....+++ .|||..+++.+|+++|.+.
T Consensus 82 ~~~~-------------------~---------------------~~~~~l~v----~nl~~~~t~~~l~~~f~~~ 113 (168)
T 1b7f_A 82 PGGE-------------------S---------------------IKDTNLYV----TNLPRTITDDQLDTIFGKY 113 (168)
T ss_dssp CCSS-------------------T---------------------TTTCEEEE----ESCCTTCCHHHHHHHHTSS
T ss_pred CCcc-------------------c---------------------CCCCCEEE----eCCCCCCCHHHHHHhhhcC
Confidence 4211 0 01122444 6999999999999999865
No 79
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-18 Score=143.53 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC----eeCCe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD--VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF----HRLQS 178 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~--v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~----~l~Gr 178 (385)
....++|||+|||+++|+++|+++|++||.|.. |.|+.++.||+++|||||+|.+. +|.+|++.|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355789999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EeEEEeehhh
Q 016658 179 LLQLLQREIV 188 (385)
Q Consensus 179 ~I~V~~a~~~ 188 (385)
.|.|.+++..
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998764
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=136.29 Aligned_cols=83 Identities=14% Similarity=0.226 Sum_probs=74.0
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecC-CCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDR-AVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~-~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
......++|||+|||+++|+++|+++|++|| |..|.|+.++ .+|+++|||||+|.+.++|++|+ .|||..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456689999999999999999999999999 9999999998 58999999999999999999999 8999999999999
Q ss_pred EEeehh
Q 016658 182 LLQREI 187 (385)
Q Consensus 182 V~~a~~ 187 (385)
|.+++.
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 998865
No 81
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=7e-17 Score=139.91 Aligned_cols=111 Identities=22% Similarity=0.322 Sum_probs=96.8
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREI 187 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~ 187 (385)
.++|||+|||+.+|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999988764
Q ss_pred hHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 188 VRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 188 ~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
... ......+.+ .|||..+++++|+++|.+.
T Consensus 82 ~~~----------------------------------------~~~~~~l~v----~nl~~~~t~~~l~~~f~~~ 112 (167)
T 1fxl_A 82 SSA----------------------------------------SIRDANLYV----SGLPKTMTQKELEQLFSQY 112 (167)
T ss_dssp CCG----------------------------------------GGTTCEEEE----ESCCTTCCHHHHHHHHGGG
T ss_pred Ccc----------------------------------------cCCCCcEEE----CCCCCcCCHHHHHHHHHhc
Confidence 211 001122333 6999999999999999865
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=129.68 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++| .|..|.|+.+ .+|+++|||||+|.+.++|++||+ |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 679999999999999999999999 999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8753
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=7e-17 Score=135.24 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=78.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 8764
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=135.45 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=76.3
Q ss_pred CCcceeeeccCCcCCChhHHH---HHhccCCceEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLR---EIFSNFGEVVDVELVMDRAVN---LPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL 179 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~---~~F~~~G~I~~v~i~~d~~tg---~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~ 179 (385)
.+.++|||+|||+++++++|. ++|++||.|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446799999999999999999 999999999999999888754 56699999999999999999999999999999
Q ss_pred eEEEeehhh
Q 016658 180 LQLLQREIV 188 (385)
Q Consensus 180 I~V~~a~~~ 188 (385)
|+|.++..+
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999998764
No 85
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=133.89 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=75.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD-VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~-v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
....++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|+++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 7899999999999999999999996 9999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
.+...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87653
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=135.94 Aligned_cols=83 Identities=22% Similarity=0.447 Sum_probs=76.5
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
......++|||+|||+.+|+++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345568899999999999999999999999999999999886 458999999999999999999999999999999999
Q ss_pred Eeehh
Q 016658 183 LQREI 187 (385)
Q Consensus 183 ~~a~~ 187 (385)
.+++.
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98865
No 87
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=135.25 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=75.2
Q ss_pred CCCcceeeeccCCcCC------ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 016658 105 ENDSLVLYIDSLSRNV------NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQS 178 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~v------te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr 178 (385)
....++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3447899999999999 789999999999999999987 46799999999999999999999999999999998
Q ss_pred -EeEEEeehhh
Q 016658 179 -LLQLLQREIV 188 (385)
Q Consensus 179 -~I~V~~a~~~ 188 (385)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999988653
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=3e-17 Score=134.86 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred ccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 103 STENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
....+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.+ +..|+|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999976 59999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.++...
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 988653
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-17 Score=131.79 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=74.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++||+.||+..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999643 56899999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 96 a~~~ 99 (109)
T 1x4a_A 96 PRSG 99 (109)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 90
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.9e-17 Score=141.83 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCc---eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGE---VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
..+.++|||+|||+++|+++|+++|++||. |..|.|+.++. |+++|||||+|.+.++|++||+ |||..|.|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345789999999999999999999999999 89999999988 9999999999999999999999 999999999999
Q ss_pred EEeehhhH
Q 016658 182 LLQREIVR 189 (385)
Q Consensus 182 V~~a~~~~ 189 (385)
|..+....
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987654
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=5e-17 Score=143.09 Aligned_cols=85 Identities=20% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhH
Q 016658 185 REIVR 189 (385)
Q Consensus 185 a~~~~ 189 (385)
+....
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 87643
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.4e-17 Score=136.92 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=77.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999 79999999999999988
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
+..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 93
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=135.51 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCeeCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD--GFHRLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln--g~~l~Gr~I~V 182 (385)
..+.++|||+|||+++|+++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++.|+ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999999854 7899999999999999999886 47899999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 998764
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=131.68 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=75.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee--------C
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR--------L 176 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l--------~ 176 (385)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ ++.++|||||+|.+.++|++|++.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEeEEEeehh
Q 016658 177 QSLLQLLQREI 187 (385)
Q Consensus 177 Gr~I~V~~a~~ 187 (385)
++.|.|.++..
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77899988763
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=134.98 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=77.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCc-eEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCeeCCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGE-VVDVELV-MDRAVNLPRGSGYVRFKTRADAEKAQLYMD--GFHRLQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~-~d~~tg~srG~aFVeF~~~e~A~~Al~~ln--g~~l~Gr~I~ 181 (385)
.+.++|||+|||+++|+++|+++|.+||. |..|.++ .++.+|.++|||||+|.+.++|++|++.|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788889999999999999999999999996 5999999999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998764
No 96
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=7.3e-17 Score=146.21 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=97.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|+|..|.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999988
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+............... .......+++ .|||..+++++|+++|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~l~v----~nlp~~~t~~~l~~~f~~~ 149 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAE-----------------------------EARAFNRIYV----ASVHQDLSDDDIKSVFEAF 149 (216)
T ss_dssp CSCCGGGHHHHHHHHH-----------------------------HHTTSCEEEE----ECCCTTCCHHHHHHHHTTS
T ss_pred CCCccccchhhhhhhc-----------------------------ccCCCcEEEE----eCCCCcCCHHHHHHHHhcc
Confidence 7654332111000000 0011222444 6999999999999999865
No 97
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=5.7e-18 Score=133.59 Aligned_cols=81 Identities=22% Similarity=0.478 Sum_probs=74.2
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.+ |++|++.|||..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999998875
Q ss_pred HH
Q 016658 189 RE 190 (385)
Q Consensus 189 ~~ 190 (385)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.9e-17 Score=152.59 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=79.1
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCC--ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFG--EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..++|||+||++++|+++|+++|++|| .|..|.|+.++.|++++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
++....
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 987654
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.8e-17 Score=133.16 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=74.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+..+|||+|||+.+|+++|+++|+.| .|..|.|+.++. |+++|||||+|.+.++|++|| .||+..|.|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999 899999999976 999999999999999999999 59999999999999988
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 764
No 100
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=129.15 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=68.0
Q ss_pred cceeeeccCCcCC------ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCe-Ee
Q 016658 108 SLVLYIDSLSRNV------NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQS-LL 180 (385)
Q Consensus 108 ~~~vfVgnLp~~v------te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr-~I 180 (385)
+++|||+|||+.+ |+++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|++|++.|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 46799999999999999999999999999999999 88
Q ss_pred EE
Q 016658 181 QL 182 (385)
Q Consensus 181 ~V 182 (385)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=130.31 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=70.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh--CCCeeCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM--DGFHRLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l--ng~~l~Gr~I~V 182 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988743 789999999999999999977 577899999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 998764
No 102
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.69 E-value=5e-17 Score=141.48 Aligned_cols=84 Identities=30% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 8764
No 103
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=134.14 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=78.0
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCc---eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGE---VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|++||+ +|+..|.|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456889999999999999999999999998 89999999987 9999999999999999999999 99999999999
Q ss_pred EEEeehhhH
Q 016658 181 QLLQREIVR 189 (385)
Q Consensus 181 ~V~~a~~~~ 189 (385)
.|.++....
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987654
No 104
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=133.17 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=72.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+++|+++|+++|++||. ..|.|+.++ +++++|||||+|.+.++|++||+ +|+..|+|+.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 44689999999999999999999999995 499999998 79999999999999999999995 8999999999999877
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=130.86 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC-----eEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ-----SLL 180 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G-----r~I 180 (385)
...++|||+|||+++|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999865 799999999999999999999999999 999
Q ss_pred EEEeehhh
Q 016658 181 QLLQREIV 188 (385)
Q Consensus 181 ~V~~a~~~ 188 (385)
+|.+++..
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99998774
No 106
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=129.56 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=73.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457899999999999999999999999987 55555 5789999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=1.9e-17 Score=141.36 Aligned_cols=84 Identities=30% Similarity=0.370 Sum_probs=79.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 108
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=129.06 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=74.6
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|+.|+ .|.++.++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45578999999999999999999999874 677888888899999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8764
No 109
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=2e-16 Score=138.28 Aligned_cols=113 Identities=21% Similarity=0.387 Sum_probs=94.8
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHHHhCCCeeC---CeEeE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVN--LPRGSGYVRFKTRADAEKAQLYMDGFHRL---QSLLQ 181 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg--~srG~aFVeF~~~e~A~~Al~~lng~~l~---Gr~I~ 181 (385)
+.++|||+|||+++|+++|+++|++||.|..|.|+.++.++ +++|||||+|.+.++|++|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999877 89999999999999999999999998876 56788
Q ss_pred EEeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcc
Q 016658 182 LLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRP 261 (385)
Q Consensus 182 V~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~ 261 (385)
+.++..... . ......+++ .|||..+++.+|+++|.+
T Consensus 82 ~~~~~~~~~-------------------~--------------------~~~~~~l~v----~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 82 MKPADSEKN-------------------N--------------------AVEDRKLFI----GMISKKCTENDIRVMFSS 118 (175)
T ss_dssp EEECGGGCC-------------------S--------------------CGGGSEEEE----ESCCTTCCHHHHHHHHGG
T ss_pred Ecccccccc-------------------c--------------------cCCCCeEEE----cCCCCcCCHHHHHHHHHh
Confidence 777654311 0 001122444 699999999999999986
Q ss_pred c
Q 016658 262 L 262 (385)
Q Consensus 262 ~ 262 (385)
.
T Consensus 119 ~ 119 (175)
T 3nmr_A 119 F 119 (175)
T ss_dssp G
T ss_pred C
Confidence 5
No 110
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.5e-16 Score=137.77 Aligned_cols=111 Identities=18% Similarity=0.307 Sum_probs=93.2
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
++|||+|||+++|+++|+++|++||.|..|.++.++. ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 4799999999999999999999999999999998875 789999999999999999999999999999999999987542
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 189 RELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 189 ~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.. . .......++ +.|||..+++.+|+++|.+.
T Consensus 80 ~~-------------------~-------------------~~~~~~~l~----v~nl~~~~t~~~l~~~f~~~ 111 (166)
T 3md3_A 80 QQ-------------------S-------------------SSDDTFNLF----VGDLNVNVDDETLRNAFKDF 111 (166)
T ss_dssp CC-------------------C-------------------CCTTCEEEE----EESCCTTCCHHHHHHHHTTS
T ss_pred CC-------------------C-------------------CCCCCceEE----ECCCCCCCCHHHHHHHHhcc
Confidence 11 0 000112233 46999999999999999865
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.9e-17 Score=135.45 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=73.8
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
+..+.++|||+|||+.+|+++|+++|.+||.|..+.+..+..+++++|||||+|.+.++|++||+.|||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999443333333378999999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98874
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=9.6e-17 Score=130.09 Aligned_cols=79 Identities=20% Similarity=0.141 Sum_probs=71.3
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCe--eCCeEeE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFH--RLQSLLQ 181 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~--l~Gr~I~ 181 (385)
..+++.+|||+|||+.+|+++|+++|++||.|..|.++. .||||||+|.+.++|.+|++.|++.. +.|+.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 345678999999999999999999999999999999873 47899999999999999999999875 7899999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++.+
T Consensus 91 V~~S~~k 97 (100)
T 3r27_A 91 VNYSTSQ 97 (100)
T ss_dssp EEECSCS
T ss_pred EEecccc
Confidence 9998753
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=4.9e-17 Score=134.45 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=72.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
....++|||+|||+++|+++|+++|++|| .|..+.|.. +.++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 899998853 3579999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 88754
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.68 E-value=1.4e-16 Score=131.34 Aligned_cols=83 Identities=23% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +.++|||||+|.+.++|++|++.|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999865 55699999999999999999999999999999999999
Q ss_pred ehhhHH
Q 016658 185 REIVRE 190 (385)
Q Consensus 185 a~~~~~ 190 (385)
+.....
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986543
No 115
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-17 Score=134.96 Aligned_cols=82 Identities=24% Similarity=0.301 Sum_probs=75.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|++||+ |||..|.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999888 677787889999999999999999999998 999999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8753
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=123.01 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=70.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM-DGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l-ng~~l~Gr~I~V~ 183 (385)
....++|||+|||+.+|+++|+++|++||.|..|.++. ++|||||+|.+.++|++|++.| +|..++|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34578999999999999999999999999999999974 4789999999999999999999 9999999999999
Q ss_pred eeh
Q 016658 184 QRE 186 (385)
Q Consensus 184 ~a~ 186 (385)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 117
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=135.75 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=74.3
Q ss_pred CCCcceeeeccCCcCCChhHHH----HHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLR----EIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|+.|++.|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 699999999998875 357899999999999999999999999999999999
Q ss_pred EEEeehhhHH
Q 016658 181 QLLQREIVRE 190 (385)
Q Consensus 181 ~V~~a~~~~~ 190 (385)
+|.+++....
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987544
No 118
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.3e-17 Score=125.49 Aligned_cols=75 Identities=28% Similarity=0.388 Sum_probs=71.4
Q ss_pred eeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 110 ~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
+|||+|||+++|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999998 5899999999998764
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=125.12 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=71.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 67999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 120
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2e-16 Score=144.38 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=71.5
Q ss_pred CcceeeeccCC-cCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 107 DSLVLYIDSLS-RNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 107 ~~~~vfVgnLp-~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
++++|||+||| +.+|+++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 89999999999999999999999754 4799999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 653
No 121
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=127.31 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66664 46789999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 122
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=134.97 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=75.2
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCce----EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEV----VDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I----~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.+.++|||+|||+++|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|++||+. |+..|.|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 689999884 799999999999999999999985 99999999999
Q ss_pred EEeehhhHH
Q 016658 182 LLQREIVRE 190 (385)
Q Consensus 182 V~~a~~~~~ 190 (385)
|..+.....
T Consensus 99 V~~a~~~e~ 107 (123)
T 2dha_A 99 LFRSTAAEV 107 (123)
T ss_dssp CEEECHHHH
T ss_pred EEECCHHHH
Confidence 998876543
No 123
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=133.31 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC--CeeCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG--FHRLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng--~~l~Gr~I~V 182 (385)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999854 68999999999999999999874 6899999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 998764
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=8.1e-17 Score=128.58 Aligned_cols=83 Identities=24% Similarity=0.435 Sum_probs=75.4
Q ss_pred CCCcceeeeccCCcCCChhHHH----HHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLR----EIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +|.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998863 57889999999999999999999999999999999
Q ss_pred EEEeehhhHH
Q 016658 181 QLLQREIVRE 190 (385)
Q Consensus 181 ~V~~a~~~~~ 190 (385)
+|.+++....
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999887543
No 125
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-18 Score=140.29 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=80.3
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVD--------VELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~--------v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
..+.++|||+|||+.+|+++|+++|++||.|.. |.|+.++.+++++|||||+|.+.++|++|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CeEeEEEeehhhHH
Q 016658 177 QSLLQLLQREIVRE 190 (385)
Q Consensus 177 Gr~I~V~~a~~~~~ 190 (385)
|+.|.|.+++....
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999877543
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=127.71 Aligned_cols=80 Identities=26% Similarity=0.274 Sum_probs=72.6
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.|||..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 3468899999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
++...
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 98664
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=131.21 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCCcceeeeccCCcC-CChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC--CCeeCCeEeE
Q 016658 105 ENDSLVLYIDSLSRN-VNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD--GFHRLQSLLQ 181 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln--g~~l~Gr~I~ 181 (385)
..+.++|||+|||++ +|+++|+++|++||.|.+|.|+ +++|||||+|.+.++|++|++.|+ +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 9999999999999999999996 357899999999999999999886 4569999999
Q ss_pred EEeehhhH
Q 016658 182 LLQREIVR 189 (385)
Q Consensus 182 V~~a~~~~ 189 (385)
|.+++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99987653
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-16 Score=128.62 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+++|+++|+++|++||.|..+.+. +++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999986 4689999999999999999999999999999999998
Q ss_pred ehh
Q 016658 185 REI 187 (385)
Q Consensus 185 a~~ 187 (385)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 129
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=129.37 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=69.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC--eeCCeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF--HRLQSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~--~l~Gr~I~V~ 183 (385)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+. .||||||+|.+.++|++|++.|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4578999999999999999999999999999999874 3789999999999999999988764 5999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 98764
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=3.8e-16 Score=125.52 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=70.5
Q ss_pred ccCCCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 103 STENDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 103 ~~~~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
...++.++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456689999999998 99999999999999999999882 78999999999999999999999999999999
Q ss_pred EEeehh
Q 016658 182 LLQREI 187 (385)
Q Consensus 182 V~~a~~ 187 (385)
|.+++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 998865
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=1.2e-16 Score=129.10 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++ ++..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999998 99999999999998
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8754
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7.4e-16 Score=124.75 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=70.6
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999885 469999999999999999999999999999999998
Q ss_pred hhhH
Q 016658 186 EIVR 189 (385)
Q Consensus 186 ~~~~ 189 (385)
+...
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7753
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=2.3e-16 Score=129.40 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=71.8
Q ss_pred CccCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 102 ASTENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 102 ~~~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.......++|||+|||+++|+++|+++|++||.|..|.|+ +|||||+|.+.++|++|++.|||..|+|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445668999999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++..
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9998764
No 134
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.6e-16 Score=136.85 Aligned_cols=110 Identities=18% Similarity=0.242 Sum_probs=94.8
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999984 689999999998876
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 187 IVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 187 ~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
...... ....++ +.|||..+++.+|+++|.+.
T Consensus 80 ~~~~~~----------------------------------------~~~~l~----V~nlp~~~t~~~l~~~F~~~ 111 (167)
T 2cjk_A 80 PRDEQD----------------------------------------KTGKIF----VGGIGPDVRPKEFEEFFSQW 111 (167)
T ss_dssp CHHHHH----------------------------------------HCEEEE----EEEECTTCCHHHHHHHHHTT
T ss_pred chhhcc----------------------------------------CCCeEE----ECCCCCCCCHHHHHHHHHhC
Confidence 543210 011233 47999999999999999865
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=125.11 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=70.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC--CeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL--QSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~--Gr~I~V~ 183 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|||..|. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999998643 789999999999999999999999999 9999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98763
No 136
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=128.20 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC--eeCCeEeEE
Q 016658 106 NDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF--HRLQSLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~--~l~Gr~I~V 182 (385)
.+.++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++||+.||+. .|.|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999754 579999999999999999999864 599999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999864
No 137
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=126.74 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=72.0
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|||+.+|+++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 34578999999999999999999999999999999873 378999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 138
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=128.10 Aligned_cols=78 Identities=18% Similarity=0.402 Sum_probs=72.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999754 78999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 96 a~~~ 99 (109)
T 1x4g_A 96 GKES 99 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8774
No 139
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=123.16 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4557899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8764
No 140
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=122.54 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=70.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.++ ++||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4457899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 141
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.6e-16 Score=130.78 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=74.4
Q ss_pred ceeeeccC----CcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHH--HhCCCe
Q 016658 109 LVLYIDSL----SRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKT----RAD----AEKAQL--YMDGFH 174 (385)
Q Consensus 109 ~~vfVgnL----p~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~----~e~----A~~Al~--~lng~~ 174 (385)
++|||+|| |+.+++.+|+++|+.||+|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 444 888988 789999
Q ss_pred eCCeEeEEEeehhhHH
Q 016658 175 RLQSLLQLLQREIVRE 190 (385)
Q Consensus 175 l~Gr~I~V~~a~~~~~ 190 (385)
|+|+.|+|........
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999998776554
No 142
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-15 Score=132.43 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eh
Q 016658 185 RE 186 (385)
Q Consensus 185 a~ 186 (385)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=2.4e-16 Score=133.19 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceE--EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVV--DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~--~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
....++|||+|||+++|+++|+++|++| .|. .|.|+.++. |+++|||||+|.+.++|++||+ +++..|.|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3457789999999999999999999999 677 899999987 9999999999999999999998 5789999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
..+...
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=9.8e-16 Score=125.52 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=70.5
Q ss_pred CCCcceeeeccCCcC-CChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSRN-VNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
....++|||+|||+. +|+++|+++|++||.|..|.| ++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 445689999999999 999999999999999999988 47899999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98753
No 145
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1.8e-15 Score=143.37 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=75.1
Q ss_pred CCCcceeeeccCCcCCChhHHH----HHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLR----EIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
..+.++|||+|||+++|+++|+ ++|++||.|..|.|+. +++++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568899999999999999966 8999999999999875 58899999999999999999999999999999999
Q ss_pred EEEeehhhH
Q 016658 181 QLLQREIVR 189 (385)
Q Consensus 181 ~V~~a~~~~ 189 (385)
+|.+++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986643
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-16 Score=129.07 Aligned_cols=77 Identities=22% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999998862 5789999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 763
No 147
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=127.88 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=71.1
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|++|++.|||..++|+.|.|.+++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999866 6899999999999999999999999999999999998875
No 148
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=3.6e-16 Score=129.54 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE-----e
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL-----L 180 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~-----I 180 (385)
...++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35789999999999999999999999999999999754 89999999999999999999999999988 7
Q ss_pred EEEeehh
Q 016658 181 QLLQREI 187 (385)
Q Consensus 181 ~V~~a~~ 187 (385)
+|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7776655
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=122.24 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=70.6
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccC--CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNF--GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~--G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
.....++|||+|||+.+|+++|+++|++| |.|..|.+. +|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 999998763 67999999999999999999999999999999
Q ss_pred EEeehhh
Q 016658 182 LLQREIV 188 (385)
Q Consensus 182 V~~a~~~ 188 (385)
|.+++..
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998764
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=9.1e-17 Score=138.09 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+++|+++|+++|++|| |..|.|+.++. |+++|||||+|.+.++|++|| .+|+..|.|+.|+|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 77999999986 999999999999999999999 79999999999999877
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=8.7e-16 Score=155.50 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=79.1
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.||+++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 864
No 152
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=120.88 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=69.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
..+.++|||+|| ++|+++|+++|++||.|..|.|. +++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999983 5789999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=5.2e-16 Score=124.13 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 105 ENDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
..+.++|||+|||+ .+|+++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98764
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=122.41 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDV-ELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
...++|||+|||+.+|+++|+++|++||.|..| .|+.++.++ .|||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 488776644 499999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8764
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=8.6e-16 Score=120.89 Aligned_cols=74 Identities=9% Similarity=0.157 Sum_probs=69.3
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+|||+++++++|+++|++| .|..+.+. +++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999884 578999999999999999999999999999999999876
Q ss_pred h
Q 016658 187 I 187 (385)
Q Consensus 187 ~ 187 (385)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=1.7e-15 Score=132.26 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=76.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999986
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=135.37 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEE--E---eecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVE--L---VMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL 179 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~--i---~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~ 179 (385)
..+.++|||+|||+.+|+++|+++|++||.|..+. + +....+|+++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45578999999999999999999999999987641 1 111246899999999999999999999999999999999
Q ss_pred eEEEeehhh
Q 016658 180 LQLLQREIV 188 (385)
Q Consensus 180 I~V~~a~~~ 188 (385)
|.|.+++..
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.8e-16 Score=123.29 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCc-eEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC-CeeCCeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGE-VVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG-FHRLQSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng-~~l~Gr~I~V~ 183 (385)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 6655552 478999999999999999999999 99999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 98764
No 159
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=1.2e-15 Score=131.94 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=73.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999865 58999999999999999999999999999999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88653
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=121.52 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=68.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+++|+++|+++|++||.|..| +.++.+++ ||||+|.+.++|++||+ |||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 56666665 99999999999999999 9999999999999876
Q ss_pred hh
Q 016658 186 EI 187 (385)
Q Consensus 186 ~~ 187 (385)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 161
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=8.7e-16 Score=126.90 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=67.5
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV---NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t---g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 7999999999999999999999983 366766665
Q ss_pred Eee
Q 016658 183 LQR 185 (385)
Q Consensus 183 ~~a 185 (385)
...
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 162
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.4e-15 Score=140.49 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=73.7
Q ss_pred cCCCcceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 104 TENDSLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
+..+.++|||+|||+ .+|+++|+++|++||.|..|.|+.++ +|||||+|.+.++|++|++.|||..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345688999999999 99999999999999999999998764 789999999999999999999999999999999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 988653
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=3.1e-16 Score=137.70 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=93.6
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
...+.++|||+|||+++|+++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|++|++ |||..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4456899999999999999999999999998766 344555678999999999999999999995 99999999999999
Q ss_pred eehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 184 QREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 184 ~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
++..... . .......+++ .|||..+++++|+++|.+.
T Consensus 87 ~~~~~~~-------------------~-------------------~~~~~~~l~v----~nlp~~~t~~~l~~~F~~~ 123 (175)
T 1fje_B 87 KPKGRDS-------------------K-------------------KVRAARTLLA----KNLSFNITEDELKEVFEDA 123 (175)
T ss_dssp CCCCSSC-------------------S-------------------TTGGGGEEEE----ESCCSSCCHHHHHHHCTTC
T ss_pred cCCCccc-------------------c-------------------ccccCCEEEE----eCCCCCCCHHHHHHHHHhc
Confidence 8765311 0 0012233444 6999999999999999864
No 164
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.7e-15 Score=118.26 Aligned_cols=73 Identities=16% Similarity=0.340 Sum_probs=67.2
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccC----C-------ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCC
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNF----G-------EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGF 173 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~ 173 (385)
..+.++|||+|||+++|+++|+++|++| | .|.++.+.. .+|||||+|.+.++|++|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3457899999999999999999999999 8 899998863 3789999999999999999 99999
Q ss_pred eeCCeEeEEEe
Q 016658 174 HRLQSLLQLLQ 184 (385)
Q Consensus 174 ~l~Gr~I~V~~ 184 (385)
.|+|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999975
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=2.8e-15 Score=135.72 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=79.1
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 764
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=5.7e-15 Score=139.98 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=98.1
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+|||+.+|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccc-cHHHHHHHhccc
Q 016658 187 IVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVV-DWNLLIAEVRPL 262 (385)
Q Consensus 187 ~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v-~wqdlkd~~r~~ 262 (385)
.... .+. ......+++ .|||..+ ++.+|+++|.+.
T Consensus 174 ~~~~-------------------~~~------------------~~~~~~l~v----~nlp~~~~~~~~l~~~f~~~ 209 (284)
T 3smz_A 174 AGQL-------------------TPA------------------LLHSRCLCV----DRLPPGFNDVDALCRALSAV 209 (284)
T ss_dssp GGGC-------------------CTT------------------TTSCSEEEE----ECCCTTCCCHHHHHHHTCSS
T ss_pred CCCC-------------------Ccc------------------cCCccEEEE----ecCCcccCCHHHHHHHhhCC
Confidence 6421 000 011122444 6999996 999999999865
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=125.81 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=68.8
Q ss_pred CCcceeee--ccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee-----CCe
Q 016658 106 NDSLVLYI--DSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR-----LQS 178 (385)
Q Consensus 106 ~~~~~vfV--gnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l-----~Gr 178 (385)
.+..+||| |||++.+|+++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34678999 77999999999999999999999998753 378999999999999999999999998 688
Q ss_pred EeEEEeehh
Q 016658 179 LLQLLQREI 187 (385)
Q Consensus 179 ~I~V~~a~~ 187 (385)
.|.|.+++.
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999875
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=4.2e-15 Score=135.75 Aligned_cols=82 Identities=26% Similarity=0.431 Sum_probs=76.0
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
...+|||+|||+.+|+++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999886 4579999999999999999999999999999999999998
Q ss_pred hhHH
Q 016658 187 IVRE 190 (385)
Q Consensus 187 ~~~~ 190 (385)
....
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7544
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=4.2e-15 Score=130.69 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ--SLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V~ 183 (385)
....+|||+||++.+|+++|+++|++||.|..|.|..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 44678999999999999999999999999999998643 357999999999999999999999999966 999999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98864
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=4.5e-15 Score=117.41 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=62.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCe--eCCeEeE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFH--RLQSLLQ 181 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~--l~Gr~I~ 181 (385)
.....++|||+|||+++|+++|+++|++||.|.+|.|+.+ ++|||||+|.+.++|++ |+|.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999999863 78999999999999883 45655 4599999
Q ss_pred EEeehhhH
Q 016658 182 LLQREIVR 189 (385)
Q Consensus 182 V~~a~~~~ 189 (385)
|.++....
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987643
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=5.6e-15 Score=131.93 Aligned_cols=84 Identities=19% Similarity=0.377 Sum_probs=79.5
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
+...
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8753
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=2e-14 Score=121.00 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=68.0
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGS-GYVRFKTRADAEKAQLYMDGFHRLQ--SLLQLL 183 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~-aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V~ 183 (385)
....|||+||++.+|+++|+++|++||.|..|.|.. + .|| |||+|.+.++|++|++.|||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 345689999999999999999999999999999864 2 276 9999999999999999999999988 589999
Q ss_pred eehhh
Q 016658 184 QREIV 188 (385)
Q Consensus 184 ~a~~~ 188 (385)
+++..
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 88764
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=9.8e-15 Score=123.75 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCCeeCC--eEeEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGS-GYVRFKTRADAEKAQLYMDGFHRLQ--SLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~-aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V 182 (385)
..-..|||+||++.+|+++|+++|++||.|.+|.|..+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 44677899999999999999999999999999988753 3678 9999999999999999999999998 89999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.+++..
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 998764
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1e-14 Score=137.40 Aligned_cols=103 Identities=23% Similarity=0.353 Sum_probs=90.7
Q ss_pred cCCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
.....++|||+|||+++|+++|+++|++||.|..|.|. +++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 34567899999999999999999999999999999985 357899999999999999999999999999999999
Q ss_pred eehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 184 QREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 184 ~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
++.. ...+++ .|||..+++.+|+++|.+.
T Consensus 92 ~a~~----------------------------------------------~~~l~v----~nl~~~~t~~~l~~~F~~~ 120 (261)
T 3sde_A 92 FATH----------------------------------------------GAALTV----KNLSPVVSNELLEQAFSQF 120 (261)
T ss_dssp ECCC----------------------------------------------SSEEEE----ESCCTTCCHHHHHHHHGGG
T ss_pred eccc----------------------------------------------CCcccc----cCCCCCCCHHHHHHHHHhc
Confidence 8752 112333 6999999999999999875
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.57 E-value=1e-14 Score=126.62 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=75.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC--eEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ--SLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G--r~I~V~ 183 (385)
...++|||+|||..+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999999889999999999999999999999999999988 899998
Q ss_pred ee
Q 016658 184 QR 185 (385)
Q Consensus 184 ~a 185 (385)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=8e-15 Score=130.68 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=75.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
...++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999998999999999999999999999985 899999999999998
Q ss_pred hhhHH
Q 016658 186 EIVRE 190 (385)
Q Consensus 186 ~~~~~ 190 (385)
.....
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87655
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=134.59 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=71.0
Q ss_pred cceeeeccCCc-CCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 108 SLVLYIDSLSR-NVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 108 ~~~vfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
+++|||+|||+ .+|+++|+++|++||.|..|.++.++ +|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998664 7899999999999999999999999999999999887
Q ss_pred hh
Q 016658 187 IV 188 (385)
Q Consensus 187 ~~ 188 (385)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 178
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-15 Score=118.09 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=65.4
Q ss_pred cceeeeccCCcCCChhH----HHHHhccC-CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 108 SLVLYIDSLSRNVNEGH----LREIFSNF-GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~d----L~~~F~~~-G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.+.|||+|||+.+++++ |+++|++| |.|.+| |+ |||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999987 55899999 599998 34 99999999999999999999999999999999
Q ss_pred EeehhhHH
Q 016658 183 LQREIVRE 190 (385)
Q Consensus 183 ~~a~~~~~ 190 (385)
.+++..+.
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99988644
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.56 E-value=2.5e-15 Score=130.53 Aligned_cols=80 Identities=16% Similarity=0.395 Sum_probs=76.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
...+|||+|||+.+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++|..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999999899999999999999999999998 89999999999999886
Q ss_pred h
Q 016658 187 I 187 (385)
Q Consensus 187 ~ 187 (385)
.
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.3e-14 Score=117.08 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=73.9
Q ss_pred CCcceeeeccCCc-----CCChhHHHHHhccCCceEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE
Q 016658 106 NDSLVLYIDSLSR-----NVNEGHLREIFSNFGEVVDVELVMDRAV-NLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL 179 (385)
Q Consensus 106 ~~~~~vfVgnLp~-----~vte~dL~~~F~~~G~I~~v~i~~d~~t-g~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~ 179 (385)
.++++|+|.||.. +-++++|+++|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4577999999963 2368999999999999999999998764 689999999999999999999999999999999
Q ss_pred eEEEeehhh
Q 016658 180 LQLLQREIV 188 (385)
Q Consensus 180 I~V~~a~~~ 188 (385)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999763
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=1.2e-14 Score=125.69 Aligned_cols=80 Identities=23% Similarity=0.511 Sum_probs=74.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeE--eEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSL--LQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~--I~V~ 183 (385)
...++|||+|||+.+|+++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999974 8887
Q ss_pred ee
Q 016658 184 QR 185 (385)
Q Consensus 184 ~a 185 (385)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 182
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=4.2e-14 Score=126.18 Aligned_cols=125 Identities=17% Similarity=0.267 Sum_probs=88.3
Q ss_pred CcceeeeccCCcCCChhHHHHHhccC----C-------ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNF----G-------EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
..++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5565555 567899999999999999999 8999999
Q ss_pred CCeEeEEEeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHH
Q 016658 176 LQSLLQLLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLL 255 (385)
Q Consensus 176 ~Gr~I~V~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdl 255 (385)
.|+.|.|.++...... . .....+... .+ +... .........+++ .|||..+++.+|
T Consensus 76 ~g~~i~v~~~~~~~~~-----------~--~~~~~~~~~-~~--~~~~----~~~~~~~~~l~v----~nl~~~~~~~~l 131 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPL-----------P--GMSENPSVY-VP--GVVS----TVVPDSAHKLFI----GGLPNYLNDDQV 131 (198)
T ss_dssp TTEEEEEECCCCCCCC-----------C--CSSSCSSCC-CT--TSSC----CCSSCCCCEEEE----ECCCTTCCHHHH
T ss_pred cCceEEEeCCCCCCCC-----------C--CCcCCCcCC-CC--CCcc----CCCCCCCCEEEE----eCCCCCCCHHHH
Confidence 9999999987653210 0 000000000 00 0000 001112233444 699999999999
Q ss_pred HHHhccc
Q 016658 256 IAEVRPL 262 (385)
Q Consensus 256 kd~~r~~ 262 (385)
+++|.+.
T Consensus 132 ~~~f~~~ 138 (198)
T 2yh0_A 132 KELLTSF 138 (198)
T ss_dssp HHHHHTB
T ss_pred HHHHHHc
Confidence 9999865
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.55 E-value=1.2e-14 Score=126.74 Aligned_cols=105 Identities=15% Similarity=0.312 Sum_probs=86.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccC----C-------ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNF----G-------EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
+.++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 6777766 356899999999999999999 8999999
Q ss_pred CCeEeEEEeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHH
Q 016658 176 LQSLLQLLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLL 255 (385)
Q Consensus 176 ~Gr~I~V~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdl 255 (385)
.|+.|.|.++..... + .....+++ .|||..+++.+|
T Consensus 76 ~g~~i~v~~~~~~~~--------------------~--------------------~~~~~l~v----~nlp~~~t~~~l 111 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP--------------------L--------------------PGAHKLFI----GGLPNYLNDDQV 111 (172)
T ss_dssp TTEECEEECCSSCCC--------------------C--------------------TTTTCEEE----ECCCTTCCHHHH
T ss_pred cCceeeecCCcccCC--------------------C--------------------CCCCEEEE----EcCCCcCCHHHH
Confidence 999999986543210 0 00222444 699999999999
Q ss_pred HHHhccc
Q 016658 256 IAEVRPL 262 (385)
Q Consensus 256 kd~~r~~ 262 (385)
+++|.+.
T Consensus 112 ~~~f~~~ 118 (172)
T 2g4b_A 112 KELLTSF 118 (172)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9999865
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=8.4e-15 Score=122.65 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=69.7
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999996 69999999999999999999985 5789999999999999999999999999999999999
Q ss_pred ehhh
Q 016658 185 REIV 188 (385)
Q Consensus 185 a~~~ 188 (385)
++..
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 8764
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=2e-14 Score=125.50 Aligned_cols=80 Identities=26% Similarity=0.435 Sum_probs=73.8
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC---CeEeEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL---QSLLQL 182 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~---Gr~I~V 182 (385)
...++|||+|||+.+|+++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999986 4899999999999999999999999998776 499999
Q ss_pred Eeeh
Q 016658 183 LQRE 186 (385)
Q Consensus 183 ~~a~ 186 (385)
.+|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.6e-14 Score=124.41 Aligned_cols=78 Identities=27% Similarity=0.288 Sum_probs=71.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3467899999999999999999999999988766 45689999999999999999999999999999999999999
Q ss_pred ehh
Q 016658 185 REI 187 (385)
Q Consensus 185 a~~ 187 (385)
+..
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=3.3e-14 Score=128.56 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=73.6
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeeh
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQRE 186 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~ 186 (385)
..++|||+|||+.+|+++|+++|++||.|..|.|+.+.. +.++|||||+|.+.++|++|++.+ +..|+|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 468999999999999999999999999999999998864 899999999999999999999855 569999999999877
Q ss_pred hhH
Q 016658 187 IVR 189 (385)
Q Consensus 187 ~~~ 189 (385)
...
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 643
No 188
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.2e-15 Score=115.36 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35789999999999999999999999999999998753 789999999999999765321 34558999999987
Q ss_pred hhh
Q 016658 186 EIV 188 (385)
Q Consensus 186 ~~~ 188 (385)
...
T Consensus 76 ~~~ 78 (88)
T 1wf0_A 76 EPK 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.51 E-value=5.9e-14 Score=132.96 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=87.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
.+.++|||+|||+.+|+++|+++|+.|| |..|.+ ++++|||||+|.+.++|++|++.|||..+.|+.|.|.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 999887 567899999999999999999999999999999999852
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccC
Q 016658 186 EIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLR 263 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~ 263 (385)
.. ...++ +.|||..+++.+|+++|.+..
T Consensus 93 ~~----------------------------------------------~~~l~----v~nlp~~~t~~~l~~~f~~~G 120 (284)
T 3smz_A 93 PT----------------------------------------------DALLC----VANLPPSLTQQQFEELVRPFG 120 (284)
T ss_dssp CC----------------------------------------------SCEEE----EESCCTTCCHHHHHHHHGGGS
T ss_pred CC----------------------------------------------CCEEE----EcCCCCcCCHHHHHHHHHhcC
Confidence 21 02233 369999999999999999853
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=4e-14 Score=134.68 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=90.9
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEee
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQR 185 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a 185 (385)
..++|||+|||+.+|+++|+++|..|| .|..|.++.++. |.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998876 889999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCcc-ccHHHHHHHhccc
Q 016658 186 EIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFV-VDWNLLIAEVRPL 262 (385)
Q Consensus 186 ~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~-v~wqdlkd~~r~~ 262 (385)
......... .........+++ .|||.. +++.+|+++|.+.
T Consensus 195 ~~~~~~~~~---------------------------------~~~~~~~~~l~v----~nlp~~~~t~~~l~~~F~~~ 235 (292)
T 2ghp_A 195 NPLEKSKRT---------------------------------DSATLEGREIMI----RNLSTELLDENLLRESFEGF 235 (292)
T ss_dssp CCC------------------------------------------CCTTTEEEE----EEECTTTCCHHHHHHHHGGG
T ss_pred CCCcccccc---------------------------------cccCCCCceEEE----ECCCcccCCHHHHHHHHhcc
Confidence 754331100 000011223444 699999 9999999999875
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=7e-14 Score=132.96 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=89.9
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEe
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQ 184 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~ 184 (385)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+ ++|||||+|.+.++|++|++ |+|..|.|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 456889999999999999999999999999999999998753 58999999999999999995 999999999999986
Q ss_pred ehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCcchhccccccceEEEeeccCCCCccccHHHHHHHhcccC
Q 016658 185 REIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPLR 263 (385)
Q Consensus 185 a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~~ 263 (385)
+. ...+++ .|||..+++.+|+++|.+..
T Consensus 115 ~~-----------------------------------------------~~~l~v----~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 115 LT-----------------------------------------------ECTLWM----TNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp CC-----------------------------------------------SCEEEE----ECCCTTCCHHHHHHHHHHTT
T ss_pred CC-----------------------------------------------CCEEEE----ECCCCCCCHHHHHHHHHHhC
Confidence 41 122444 69999999999999999863
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=8e-14 Score=129.98 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=71.1
Q ss_pred CCCcceeeeccCCcCC---------ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 105 ENDSLVLYIDSLSRNV---------NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~v---------te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
....++||||||+..+ ++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 7999999999999999999974 478999999999999999999999999
Q ss_pred ------------CCeEeEEEeehhhHH
Q 016658 176 ------------LQSLLQLLQREIVRE 190 (385)
Q Consensus 176 ------------~Gr~I~V~~a~~~~~ 190 (385)
.|+.|.|.+|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987543
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=2.6e-13 Score=128.31 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=71.8
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-QSLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-Gr~I~V~ 183 (385)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+|++.|||..|. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999998543 589999999999999999999999999 9999999
Q ss_pred eehh
Q 016658 184 QREI 187 (385)
Q Consensus 184 ~a~~ 187 (385)
++++
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9863
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.4e-13 Score=109.27 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCcceeeeccCCcCC-----------ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCe
Q 016658 106 NDSLVLYIDSLSRNV-----------NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFH 174 (385)
Q Consensus 106 ~~~~~vfVgnLp~~v-----------te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~ 174 (385)
.+.++|+|.||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|++.|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 347889999994332 25799999999999999965 554 379999999999999999999999999
Q ss_pred eCCeEeEEEeehhh
Q 016658 175 RLQSLLQLLQREIV 188 (385)
Q Consensus 175 l~Gr~I~V~~a~~~ 188 (385)
|+|+.|.|.++...
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998664
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=1.4e-13 Score=112.18 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=64.8
Q ss_pred eccCCcCCChhHHHHHh------------ccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 113 IDSLSRNVNEGHLREIF------------SNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 113 VgnLp~~vte~dL~~~F------------~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
+.||++.+++++|+++| ++||.|.+|.|+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 57888888888887666 9999999999998765 7899999999999999999999999999999999
Q ss_pred EEEee
Q 016658 181 QLLQR 185 (385)
Q Consensus 181 ~V~~a 185 (385)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99864
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=1e-12 Score=107.27 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=71.2
Q ss_pred CcceeeeccC--CcCCC--------hhHHHHHhccCCceEEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCCe
Q 016658 107 DSLVLYIDSL--SRNVN--------EGHLREIFSNFGEVVDVELVMDRAV--NLPRGSGYVRFKTRADAEKAQLYMDGFH 174 (385)
Q Consensus 107 ~~~~vfVgnL--p~~vt--------e~dL~~~F~~~G~I~~v~i~~d~~t--g~srG~aFVeF~~~e~A~~Al~~lng~~ 174 (385)
+++.|.+.|+ +.... +++|++.|++||.|.+|.|+.+..+ +.++|||||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667888988 33443 3689999999999999999988765 3689999999999999999999999999
Q ss_pred eCCeEeEEEeehhh
Q 016658 175 RLQSLLQLLQREIV 188 (385)
Q Consensus 175 l~Gr~I~V~~a~~~ 188 (385)
|.|+.|.|.+....
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998764
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=4.1e-13 Score=122.34 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCCce--EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEV--VDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQS 178 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G~I--~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr 178 (385)
.+..+|||+|||+.+|+++|+++|++||.| ..+.++.+. +..+|||||+|.+.++|.+||..|||..|.|.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 346789999999999999999999999999 889888765 55679999999999999999999999999987
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.6e-12 Score=108.36 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=71.8
Q ss_pred CcceeeeccCCc--CC---ChhHHHHHhccCCceEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 107 DSLVLYIDSLSR--NV---NEGHLREIFSNFGEVVDVELVMDRA----VNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 107 ~~~~vfVgnLp~--~v---te~dL~~~F~~~G~I~~v~i~~d~~----tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
+++.|++.|+-. ++ .+++|++.|++||.|.+|.|+.+.. ++.++||+||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999932 22 2578999999999999999999865 35788999999999999999999999999999
Q ss_pred eEeEEEeehhh
Q 016658 178 SLLQLLQREIV 188 (385)
Q Consensus 178 r~I~V~~a~~~ 188 (385)
+.|.|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998764
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.2e-12 Score=123.00 Aligned_cols=81 Identities=27% Similarity=0.343 Sum_probs=73.2
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC-CCeeC---CeEeEE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD-GFHRL---QSLLQL 182 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln-g~~l~---Gr~I~V 182 (385)
+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+ .+|+++|||||+|.+.++|.+|++.|| |..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999999 579999999999999999999999995 55554 899999
Q ss_pred Eeehhh
Q 016658 183 LQREIV 188 (385)
Q Consensus 183 ~~a~~~ 188 (385)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 987653
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.36 E-value=1.4e-12 Score=120.29 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-QSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-Gr~I~V~ 183 (385)
.+.++|||+|||+.+|+++|+++|++|| .|..|.++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998642 4789999999999999999999999999 9999999
Q ss_pred eehh
Q 016658 184 QREI 187 (385)
Q Consensus 184 ~a~~ 187 (385)
+++.
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=8.3e-13 Score=118.28 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccCC-ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC-CeEeEEE
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNFG-EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL-QSLLQLL 183 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~-Gr~I~V~ 183 (385)
.+.++|||+|||+.+|+++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998643 3789999999999999999999999999 9999999
Q ss_pred eehh
Q 016658 184 QREI 187 (385)
Q Consensus 184 ~a~~ 187 (385)
+++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 8864
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=3e-12 Score=125.39 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=66.1
Q ss_pred cCCCcceeeecc--CCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC---Ce
Q 016658 104 TENDSLVLYIDS--LSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL---QS 178 (385)
Q Consensus 104 ~~~~~~~vfVgn--Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~---Gr 178 (385)
...++.+||||| |++.+||++|+++|++||+|..|.|.. +||||||+|.+.++|++||+.|||.++. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356688999999 589999999999999999999987742 5799999999999999999999999883 44
Q ss_pred --EeEEEeeh
Q 016658 179 --LLQLLQRE 186 (385)
Q Consensus 179 --~I~V~~a~ 186 (385)
.|.|.+++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=100.10 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=57.0
Q ss_pred cCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 118 RNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 118 ~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
..+|+++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.||+.++ .+.|+.|+|.+++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCC
Confidence 568999999999999999999997 4689999999999999999999754 468999999987764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=8.6e-11 Score=97.27 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=64.8
Q ss_pred CcceeeeccCCcCC----------ChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeC
Q 016658 107 DSLVLYIDSLSRNV----------NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRL 176 (385)
Q Consensus 107 ~~~~vfVgnLp~~v----------te~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~ 176 (385)
+++.|.+.|+=..- .+++|++.|++||.|.+|.|..+. .+|||||+|.+.++|++|++.|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35678888873211 135788999999999999886542 5899999999999999999999999999
Q ss_pred CeEeEEEeehhh
Q 016658 177 QSLLQLLQREIV 188 (385)
Q Consensus 177 Gr~I~V~~a~~~ 188 (385)
|+.|.|.++...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998764
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=6.2e-10 Score=92.85 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=70.3
Q ss_pred cCCCcceeeeccCCcC-CChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHHhC--CCeeCCeE
Q 016658 104 TENDSLVLYIDSLSRN-VNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKT-RADAEKAQLYMD--GFHRLQSL 179 (385)
Q Consensus 104 ~~~~~~~vfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~-~e~A~~Al~~ln--g~~l~Gr~ 179 (385)
....++.|||+||++. +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|..|++.|| +..|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4567899999999999 99999999999999999999987764 69999999 899999999994 78899998
Q ss_pred eEEEeehhhH
Q 016658 180 LQLLQREIVR 189 (385)
Q Consensus 180 I~V~~a~~~~ 189 (385)
++++......
T Consensus 88 ~~~evL~Gee 97 (121)
T 1owx_A 88 VTWEVLEGEV 97 (121)
T ss_dssp EEEEECCHHH
T ss_pred EEEEECCCHH
Confidence 8887765543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=84.86 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=61.2
Q ss_pred CCcceeeeccCCc----CCCh----hHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 106 NDSLVLYIDSLSR----NVNE----GHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 106 ~~~~~vfVgnLp~----~vte----~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
++..+|+|.-++. ..-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4566888887662 2333 5688999999999999998653 8999999999999998 99999999
Q ss_pred eEeEEEeehh
Q 016658 178 SLLQLLQREI 187 (385)
Q Consensus 178 r~I~V~~a~~ 187 (385)
+.|+|..+..
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999998764
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.2e-08 Score=93.14 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=61.5
Q ss_pred CChhHHHHHhccCCceEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEEeehhh
Q 016658 120 VNEGHLREIFSNFGEVVDVELVMDRA----VNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLLQREIV 188 (385)
Q Consensus 120 vte~dL~~~F~~~G~I~~v~i~~d~~----tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~~a~~~ 188 (385)
-.+++|.+.|++||.|..+.|+.+.. ++.++||+||+|.+.++|++|++.|||..+.||.|.+.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 34578999999999999999986554 3589999999999999999999999999999999999998754
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=7.9e-09 Score=81.87 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCCcceeeeccCCcC-----CCh----hHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 105 ENDSLVLYIDSLSRN-----VNE----GHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~-----vte----~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
.++..+|+|.-++.. +.. .+|.+.|.+||+|..++++.++ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345678999887632 222 4688999999999999998764 9999999999999998 999999
Q ss_pred CCeEeEEEee
Q 016658 176 LQSLLQLLQR 185 (385)
Q Consensus 176 ~Gr~I~V~~a 185 (385)
.|+.|+|...
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.4e-06 Score=66.31 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCcceeeeccCCcCCChhHHHHHhccC-----CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEe
Q 016658 106 NDSLVLYIDSLSRNVNEGHLREIFSNF-----GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL 180 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~dL~~~F~~~-----G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I 180 (385)
...++|-+-|||..+++..|+.+++.+ |.|..+.+..|.. -|+|+|.+...|-+|.-+|+|.+|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346788888999999999999999999 9999999987653 59999999999999998999999999999
Q ss_pred EEEeehhhHH
Q 016658 181 QLLQREIVRE 190 (385)
Q Consensus 181 ~V~~a~~~~~ 190 (385)
++.-..+-..
T Consensus 93 r~gTv~eL~~ 102 (117)
T 2l9w_A 93 RSGTINDMKR 102 (117)
T ss_dssp EEECHHHHHH
T ss_pred EecCHHHHHh
Confidence 9998777544
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.32 E-value=0.00019 Score=61.35 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=29.8
Q ss_pred EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCee
Q 016658 137 DVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHR 175 (385)
Q Consensus 137 ~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l 175 (385)
.+.|+.+.. +++|||||+|.+.++|++|++.+++...
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 356666654 6899999999999999999998876433
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.00084 Score=53.86 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=61.2
Q ss_pred cceeeeccCCcCC-Ch----hHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEE
Q 016658 108 SLVLYIDSLSRNV-NE----GHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQL 182 (385)
Q Consensus 108 ~~~vfVgnLp~~v-te----~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V 182 (385)
.++|+|.||+..+ +. +.++++|..|+++........ -.-..|.|.+.++|.+|-..|++..++|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 33 356889999999888777643 235789999999999999999999999999999
Q ss_pred Eeeh
Q 016658 183 LQRE 186 (385)
Q Consensus 183 ~~a~ 186 (385)
-++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9887
No 212
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.79 E-value=0.00073 Score=57.28 Aligned_cols=87 Identities=9% Similarity=-0.140 Sum_probs=58.4
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-CCCeeCCeEeEEEeehhhHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCc
Q 016658 147 NLPRGSGYVRFKTRADAEKAQLYM-DGFHRLQSLLQLLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLD 225 (385)
Q Consensus 147 g~srG~aFVeF~~~e~A~~Al~~l-ng~~l~Gr~I~V~~a~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~pp~~g~~~~~ 225 (385)
.+.+|+++|+|.+.++|++|++.| ||..++| .|.+..+...... .... .... ... ..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~---------~~~~----~~~~----~~~-~~--- 67 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTV---------TEGS----HHHH----HHM-HR--- 67 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEE---------ECSS----SSCC----CCS-CS---
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccc---------cccc----cccc----ccc-cc---
Confidence 467899999999999999999999 9999999 9998876543210 0000 0000 000 00
Q ss_pred chhccccccceEEEeeccCCCCccccHHHHHHHhccc
Q 016658 226 LEEVDLRDDHQILLHVDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 226 ~~e~~~r~~~qi~~~v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
........+++ .|||+.+++.+|+++|.+.
T Consensus 68 ---~~~~~~~~l~V----~nl~~~~t~~~l~~~F~~~ 97 (150)
T 2i2y_A 68 ---DSCPLDCKVYV----GNLGNNGNKTELERAFGYY 97 (150)
T ss_dssp ---SSSTTSCEEEE----ESCCSCCSCHHHHHHHHHH
T ss_pred ---cCCCCCCEEEE----eCCCCCCCHHHHHHHHHhh
Confidence 01112233444 7999999999999999875
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.0095 Score=46.71 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=57.3
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNL--PRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~--srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
++|.|.+||+.+||+++.+.++....+.....+..+.+.+ .-.-|||.|.+.+++..-.+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999998877777665554322 23578999999999999999999998843
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.011 Score=47.22 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=58.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccC-----CceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeE
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNF-----GEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQ 181 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~-----G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~ 181 (385)
-..+|.|.|||..+.++.|.-+|+.- |+|..+.... +-|+|+|.+.+.|++.++. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 36789999999999999999999872 6888887742 4699999999999999863 46889999999
Q ss_pred EEee
Q 016658 182 LLQR 185 (385)
Q Consensus 182 V~~a 185 (385)
|...
T Consensus 78 V~P~ 81 (104)
T 2dhx_A 78 LRPA 81 (104)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 8763
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.018 Score=47.28 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=58.1
Q ss_pred CCCcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCC-eEeEEE
Q 016658 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQ-SLLQLL 183 (385)
Q Consensus 105 ~~~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~G-r~I~V~ 183 (385)
....+-|.|-+.|... ...+..+|++||+|.+.... ....+-.|.|.+..+|++||. .||..|.| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3446778888888875 45677789999999988762 123599999999999999997 69999985 567777
Q ss_pred eeh
Q 016658 184 QRE 186 (385)
Q Consensus 184 ~a~ 186 (385)
.-.
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.15 E-value=0.011 Score=46.71 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=43.9
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD 171 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln 171 (385)
..++| ++|..+...||.++|+.||. ..|..+-|- -|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 99999999999999999994 345555442 69999999999999998763
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.62 E-value=0.016 Score=46.00 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=44.7
Q ss_pred ceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 016658 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMD 171 (385)
Q Consensus 109 ~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~ln 171 (385)
..++| ++|..+...||.++|+.|| -..|..+-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 4456666542 69999999999999999764
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.20 E-value=0.023 Score=47.38 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=55.5
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEE-EEeec--------CCCC-----CccceEEEEeCCHHHHHHHHHHhCCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDV-ELVMD--------RAVN-----LPRGSGYVRFKTRADAEKAQLYMDGF 173 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~d--------~~tg-----~srG~aFVeF~~~e~A~~Al~~lng~ 173 (385)
...|.|-+.|...+ ..+.+.|++||.|.+- .+... +.+. ...++-.|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44567777877765 4556679999998762 11100 0000 124578999999999999997 6999
Q ss_pred eeCCeEeEEEeehhh
Q 016658 174 HRLQSLLQLLQREIV 188 (385)
Q Consensus 174 ~l~Gr~I~V~~a~~~ 188 (385)
.|.|..|-|....+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999999999887654
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.01 E-value=0.048 Score=43.09 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=52.0
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVN--LPRGSGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg--~srG~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
+-+|.|..||+.+||+++.+.++..-++.....+..+.+. ..-.-|||.|.+.+++..-.+.++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4679999999999999998888776554433333222221 122468999999999999999999998843
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.84 E-value=0.012 Score=59.28 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=42.5
Q ss_pred CcceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 016658 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168 (385)
Q Consensus 107 ~~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~ 168 (385)
..++|||. .+..+++.+|.++|++||.|..+.+..++ .-||.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 36889997 68999999999999999999999876543 2599999999999998765
No 221
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=78.19 E-value=1 Score=38.14 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=0.0
Q ss_pred EEeCCHHHHHHHHHHhCCCeeC--CeEeEEEe
Q 016658 155 VRFKTRADAEKAQLYMDGFHRL--QSLLQLLQ 184 (385)
Q Consensus 155 VeF~~~e~A~~Al~~lng~~l~--Gr~I~V~~ 184 (385)
.+|++.++|+.|+..|++.... |+.+.+..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~ 42 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDS 42 (165)
T ss_dssp --------------------------------
T ss_pred hhhhccccccccchhhccccccccCCCCCCCc
Confidence 7999999999999999886664 55554443
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=76.70 E-value=4.6 Score=40.95 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=44.0
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng 172 (385)
...++|+ +|..+...+|.++|+.||.+ +|..+.+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3455565 88888899999999999953 4554432 3799999999999999998853
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=74.04 E-value=7 Score=28.46 Aligned_cols=68 Identities=9% Similarity=0.179 Sum_probs=42.5
Q ss_pred eeeec-cCCcCCChhHHHHHhccCC-----ceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCCeeCCeEeEEE
Q 016658 110 VLYID-SLSRNVNEGHLREIFSNFG-----EVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLLQLL 183 (385)
Q Consensus 110 ~vfVg-nLp~~vte~dL~~~F~~~G-----~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~lng~~l~Gr~I~V~ 183 (385)
++||. +--..++..+|..++..-+ .|-.+++. -.|.||+-.. +.|..+++.|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 34553 1234567777777776543 35666663 1289999875 56888999999999999999988
Q ss_pred eeh
Q 016658 184 QRE 186 (385)
Q Consensus 184 ~a~ 186 (385)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 224
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=73.34 E-value=2.1 Score=35.05 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=0.0
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCeeCC
Q 016658 152 SGYVRFKTRADAEKAQLYMDGFHRLQ 177 (385)
Q Consensus 152 ~aFVeF~~~e~A~~Al~~lng~~l~G 177 (385)
++|++|.+...+..||+.++|....|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp --------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCC
Confidence 67888888888999998888765444
No 225
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=57.69 E-value=3.3 Score=32.95 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.++|++|+++|.+.
T Consensus 31 l~VgnLp~~~te~dL~~~F~~~ 52 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLAREN 52 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHh
Confidence 3347999999999999999976
No 226
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.60 E-value=6.2 Score=30.52 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.++|++|+++|.+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~ 39 (108)
T 1x4c_A 20 VSGLPPSGSWQDLKDHMREA 39 (108)
T ss_dssp EESCCSSCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999875
No 227
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.49 E-value=8.4 Score=30.33 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.8
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.++++||+++|.++
T Consensus 20 ~V~nLp~~~te~dl~~~F~~~ 40 (109)
T 2dnn_A 20 SVHGMPFSAMENDVRDFFHGL 40 (109)
T ss_dssp EEECCCSSCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHhccC
Confidence 347999999999999999976
No 228
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.54 E-value=7.6 Score=29.91 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.++++||+++|.+.
T Consensus 20 V~nLp~~~te~~l~~~F~~~ 39 (102)
T 1wez_A 20 MRGLPYRATENDIYNFFSPL 39 (102)
T ss_dssp EESCCTTCCHHHHHHSSCSC
T ss_pred EeCCCCCCCHHHHHHHHHHc
Confidence 37999999999999999865
No 229
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=49.04 E-value=4.2 Score=30.32 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.++|||+.+++.+|+++|.+.
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~ 25 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSL 25 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHh
Confidence 4457999999999999999865
No 230
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=47.97 E-value=3.1 Score=35.05 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.0
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|++.|||+.+++.+|+++|.+.
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~ 79 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSI 79 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHH
Confidence 4457999999999999999865
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=46.86 E-value=5.1 Score=31.54 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCcceeeeccCCcCCChhH
Q 016658 106 NDSLVLYIDSLSRNVNEGH 124 (385)
Q Consensus 106 ~~~~~vfVgnLp~~vte~d 124 (385)
...++|||+|||+.+|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456799999999999864
No 232
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=46.15 E-value=11 Score=30.99 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.++|+||+++|.+.
T Consensus 49 lfV~nLp~~~te~dL~~~F~~~ 70 (139)
T 2hgn_A 49 VHMRGLPYKATENDIYNFFSPL 70 (139)
T ss_dssp EECCSCCTTCCHHHHHHHHCSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 4458999999999999999976
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.46 E-value=8.6 Score=29.48 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++++|+++|.+.
T Consensus 20 V~nLp~~~te~~l~~~F~~~ 39 (104)
T 1wg5_A 20 LRGLPFGCSKEEIVQFFSGL 39 (104)
T ss_dssp EESCCTTCCHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 47999999999999999975
No 234
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.21 E-value=9.7 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.||+++|.++
T Consensus 27 ~V~nLp~~~te~dl~~~F~~~ 47 (123)
T 2dha_A 27 RMRGLPFTATAEEVVAFFGQH 47 (123)
T ss_dssp EECSCCTTCCHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHhh
Confidence 347999999999999999976
No 235
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=42.93 E-value=6.9 Score=35.09 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|++.||++.+++.+|+++|.+.
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~ 92 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSL 92 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHH
Confidence 4457999999999999999865
No 236
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=37.87 E-value=13 Score=30.08 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.9
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 46 fVgnLp~~~te~dL~~~F~~~ 66 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSGL 66 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHhcC
Confidence 347999999999999999977
No 237
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=35.64 E-value=13 Score=28.50 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=18.1
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++++|+++|.+.
T Consensus 16 V~nLp~~~te~~l~~~F~~~ 35 (107)
T 2lmi_A 16 AQGLPWSCTMEDVLNFFSDC 35 (107)
T ss_dssp EECCCSSCCSHHHHHHTTTS
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 47999999999999999965
No 238
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=34.01 E-value=16 Score=29.89 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++.||+++|.+.
T Consensus 49 VgnLp~~~te~dL~~~F~~~ 68 (136)
T 2hgl_A 49 LRGLPWSCSVEDVQNFLSDC 68 (136)
T ss_dssp EESCCTTCCHHHHHHHTTTC
T ss_pred EeCCCCCCCHHHHHHHHHHh
Confidence 37999999999999999975
No 239
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.95 E-value=17 Score=28.62 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.4
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 29 ~V~nLp~~~te~~l~~~F~~~ 49 (124)
T 1wel_A 29 YLKGLPFEAENKHVIDFFKKL 49 (124)
T ss_dssp EEECCCTTCCHHHHHHHSCSS
T ss_pred EEeCCCCCCCHHHHHHHHHhc
Confidence 347999999999999999865
No 240
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=32.85 E-value=20 Score=26.33 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++++|+++|.+.
T Consensus 13 V~nlp~~~t~~~l~~~f~~~ 32 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNEC 32 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 47999999999999999875
No 241
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=32.28 E-value=10 Score=29.01 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=19.1
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.+.|||+.++-.+|+++|.+.
T Consensus 12 lfV~nL~~~~tee~L~~~F~~~ 33 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALSPY 33 (95)
T ss_dssp EEEESCCTTCCHHHHHHHSTTT
T ss_pred EEEeCCCCcCCHHHHHHHHHhh
Confidence 4457999999999999999865
No 242
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=31.42 E-value=12 Score=28.52 Aligned_cols=39 Identities=18% Similarity=-0.006 Sum_probs=32.5
Q ss_pred CCCcchhhhcccccCCchhhhhh-chhHHHHHHhhcCCCC
Q 016658 313 PLDEPVLLLEGLHSVDALALQFA-GLCTLVQDLFHQGEGE 351 (385)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 351 (385)
..+.|+.+.+..+.|+.+|..|| .++.|++.|+.+-.+.
T Consensus 17 v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~N 56 (88)
T 1ug0_A 17 IKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDN 56 (88)
T ss_dssp SCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTC
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCC
Confidence 44567777788999999999999 8899999999876543
No 243
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=30.76 E-value=21 Score=26.13 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++++|+++|.+.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~ 29 (88)
T 1wg1_A 10 VKNLPQDSNCQEVHDLLKDY 29 (88)
T ss_dssp EESCCSSCCHHHHHHHTCSS
T ss_pred EeCCCCCCCHHHHHHHHhhC
Confidence 37999999999999999876
No 244
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=22 Score=26.12 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++.+|+++|.+.
T Consensus 15 v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS
T ss_pred EECCCCCCCHHHHHHHHhhC
Confidence 47999999999999999876
No 245
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=30.69 E-value=21 Score=27.09 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=18.6
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||..++..+|+++|.+.
T Consensus 23 fV~nLp~~~te~~L~~~F~~~ 43 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSSI 43 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHhc
Confidence 347999999999999999865
No 246
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=29.73 E-value=23 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 16 V~nlp~~~t~~~l~~~F~~~ 35 (87)
T 3s7r_A 16 VGGLSWDTSKKDLKDYFTKF 35 (87)
T ss_dssp EECCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 36999999999999999865
No 247
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.52 E-value=22 Score=26.39 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.3
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++++|+++|.+.
T Consensus 19 ~v~nLp~~~t~~~l~~~F~~~ 39 (98)
T 2cqp_A 19 KVQNMPFTVSIDEILDFFYGY 39 (98)
T ss_dssp EEESCCTTCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHHHc
Confidence 347999999999999999865
No 248
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.09 E-value=22 Score=27.52 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=18.5
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~ 39 (114)
T 2cpy_A 19 HITNIPFSITKMDVLQFLEGI 39 (114)
T ss_dssp EEESCCTTSCHHHHHHHTTTS
T ss_pred EEeCcCCcCCHHHHHHHHHhC
Confidence 347999999999999999865
No 249
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.22 E-value=24 Score=27.70 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=18.4
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 21 ~V~nLp~~~te~~l~~~F~~~ 41 (118)
T 2db1_A 21 KLRGLPWSCSIEDVQNFLSDC 41 (118)
T ss_dssp EEESCCTTCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHHHc
Confidence 347999999999999999865
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=28.12 E-value=25 Score=25.88 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=18.7
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++++|+++|.+.
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~ 39 (95)
T 2ek1_A 18 IKVQNMPFTVSIDEILDFFYGY 39 (95)
T ss_dssp EEEECCCTTCCHHHHHHHTTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 3347999999999999999865
No 251
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=27.94 E-value=1.5e+02 Score=25.38 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=36.9
Q ss_pred eeeeccCCcC---------CChhHHHHHh--ccCCceEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHH
Q 016658 110 VLYIDSLSRN---------VNEGHLREIF--SNFGEVVDVELVMDRAVNLPRGSGYVRFKT-RADAEKAQL 168 (385)
Q Consensus 110 ~vfVgnLp~~---------vte~dL~~~F--~~~G~I~~v~i~~d~~tg~srG~aFVeF~~-~e~A~~Al~ 168 (385)
.+.|-|++.. ....+|.+.| ..|.++. |..+.++. -+.|+|.|+|.. -..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 4566777751 3346889977 9998766 44445543 478999999984 444455553
No 252
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.80 E-value=17 Score=30.46 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=17.8
Q ss_pred hHHHHHhccCCceEEEEEeecCCCCCccceEEEEeC
Q 016658 123 GHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFK 158 (385)
Q Consensus 123 ~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~ 158 (385)
+|+.++|...|.|+... ..+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 56667788888776542 35889999976
No 253
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=26.53 E-value=27 Score=25.31 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.5
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||..+++.+|+++|.+.
T Consensus 10 ~V~nlp~~~t~~~l~~~F~~~ 30 (89)
T 3ucg_A 10 YVGNVDYGATAEELEAHFHGC 30 (89)
T ss_dssp EEESCCTTCCHHHHHHHHGGG
T ss_pred EEeCCCCCCCHHHHHHHHHhC
Confidence 346999999999999999965
No 254
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.38 E-value=86 Score=23.09 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~ 39 (99)
T 2cpd_A 20 VRNLMLSTSEEMIEKEFNNI 39 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999976
No 255
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=26.22 E-value=27 Score=27.10 Aligned_cols=22 Identities=23% Similarity=0.054 Sum_probs=18.8
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++.+|+++|.+.
T Consensus 9 lfV~nL~~~~te~~L~~~F~~~ 30 (110)
T 3s8s_A 9 VTFARLNDNVRETFLKDMCRKY 30 (110)
T ss_dssp EEEESCCTTCCHHHHHHHHTTT
T ss_pred EEEECCCCCCCHHHHHHHHHhc
Confidence 3447999999999999999865
No 256
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.77 E-value=46 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=18.8
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++.+|+++|.+.
T Consensus 22 l~V~nL~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 22 VYVGNLPRDARVSDLKRALREL 43 (97)
T ss_dssp EEEECCCTTCCHHHHHHHHHHT
T ss_pred EEEeCCCCcCcHHHHHHHHHhc
Confidence 3347999999999999999865
No 257
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=25.35 E-value=33 Score=25.32 Aligned_cols=22 Identities=9% Similarity=-0.257 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.++|||+.+++.+|+++|.+.
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~ 35 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQY 35 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHhcc
Confidence 4457999999999999999875
No 258
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.32 E-value=31 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=18.6
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 12 ~V~nl~~~~t~~~l~~~F~~~ 32 (94)
T 2e5g_A 12 FVSGFPRGVDSAQLSEYFLAF 32 (94)
T ss_dssp EEECCCTTCCHHHHHHHGGGT
T ss_pred EEECCCCCCCHHHHHHHHHhc
Confidence 347999999999999999875
No 259
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.28 E-value=29 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=19.2
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++.+|+++|.+.
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~~ 39 (104)
T 1wi8_A 18 AFLGNLPYDVTEESIKEFFRGL 39 (104)
T ss_dssp EEEESCCSSCCHHHHHHHTTTS
T ss_pred EEEeCCCCcCCHHHHHHHHHHC
Confidence 3347999999999999999976
No 260
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.24 E-value=29 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.7
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||+.+++.+|+++|.+.
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~ 39 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL 39 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHHhC
Confidence 347999999999999999876
No 261
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=25.14 E-value=15 Score=27.34 Aligned_cols=37 Identities=16% Similarity=-0.025 Sum_probs=30.4
Q ss_pred CCCcchhhhcccccCCchhhhhh-chhHHHHHHhhcCC
Q 016658 313 PLDEPVLLLEGLHSVDALALQFA-GLCTLVQDLFHQGE 349 (385)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 349 (385)
+.+.|+.+.+..+.||.+|..|| .++.|++.|+.+-.
T Consensus 7 ~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~ 44 (78)
T 1x4o_A 7 GKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNR 44 (78)
T ss_dssp SCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred CCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcC
Confidence 34456666778889999999999 88999999998743
No 262
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.03 E-value=34 Score=25.75 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=19.3
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++.+|+++|.+.
T Consensus 19 l~V~nlp~~~t~~~l~~~F~~~ 40 (105)
T 2dh8_A 19 LFVGGLDWSTTQETLRSYFSQY 40 (105)
T ss_dssp ECCBSCCTTCCHHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhc
Confidence 4458999999999999999875
No 263
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.87 E-value=28 Score=26.05 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=17.9
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++.+|+++|.+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~ 39 (101)
T 2fc9_A 20 LSNLSYSATEETLQEVFEKA 39 (101)
T ss_dssp EESCCTTCCHHHHHHHCSSC
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 36999999999999999864
No 264
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.47 E-value=30 Score=25.14 Aligned_cols=22 Identities=9% Similarity=-0.242 Sum_probs=18.9
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||..++..+|+++|.+.
T Consensus 8 l~V~nLp~~~te~~l~~~F~~~ 29 (88)
T 1wf0_A 8 VFVGRCTGDMTEDELREFFSQY 29 (88)
T ss_dssp EEEESCCSSSCHHHHHHHSTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHc
Confidence 3347999999999999999876
No 265
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=23.82 E-value=33 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=17.6
Q ss_pred CCCCccccHHHHHHHhccc
Q 016658 244 SSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 244 ~~lp~~v~wqdlkd~~r~~ 262 (385)
.|||..+++.+|+++|.+.
T Consensus 22 ~nlp~~~~~~~l~~~F~~~ 40 (95)
T 2ywk_A 22 GNLEARVREEILYELFLQA 40 (95)
T ss_dssp ECCCTTCCHHHHHHHHGGG
T ss_pred ECCCCCCCHHHHHHHHHhc
Confidence 6999999999999999875
No 266
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.69 E-value=85 Score=23.74 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=18.1
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.+++.+|+++|.+.
T Consensus 20 V~nLp~~~t~~~l~~~F~~~ 39 (113)
T 2cpe_A 20 VQGLNDSVTLDDLADFFKQC 39 (113)
T ss_dssp EECCCTTCCHHHHHHHHTTT
T ss_pred EcCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999875
No 267
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.51 E-value=33 Score=26.21 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 20 V~nlp~~~~~~~l~~~f~~~ 39 (114)
T 2do0_A 20 VANLDYKVGWKKLKEVFSMA 39 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999875
No 268
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.82 E-value=34 Score=26.03 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=18.2
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 27 V~nLp~~~t~~~l~~~F~~~ 46 (109)
T 1x4a_A 27 VGNLPPDIRTKDIEDVFYKY 46 (109)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999976
No 269
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.58 E-value=29 Score=25.94 Aligned_cols=19 Identities=11% Similarity=-0.106 Sum_probs=17.0
Q ss_pred cCCCCccccHHHHHHHhcc
Q 016658 243 ASSLPFVVDWNLLIAEVRP 261 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~ 261 (385)
+.|||..+++.+|+++|.+
T Consensus 20 V~nLp~~~t~~~l~~~F~~ 38 (102)
T 2fc8_A 20 VKGLSEDTTEETLKESFDG 38 (102)
T ss_dssp EECCCTTCCHHHHHHTSTT
T ss_pred EeCCCCccCHHHHHHHhcC
Confidence 3699999999999999874
No 270
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=22.45 E-value=33 Score=25.88 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=18.4
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||..+++.+|+++|.+.
T Consensus 33 ~V~nlp~~~t~~~l~~~F~~~ 53 (107)
T 3ulh_A 33 LVSNLDFGVSDADIQELFAEF 53 (107)
T ss_dssp EEESCCTTCCHHHHHHHHHTT
T ss_pred EEeCCCCCCCHHHHHHHHHhc
Confidence 347999999999999999865
No 271
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.72 E-value=36 Score=25.58 Aligned_cols=19 Identities=21% Similarity=-0.048 Sum_probs=17.8
Q ss_pred CCCCccccHHHHHHHhccc
Q 016658 244 SSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 244 ~~lp~~v~wqdlkd~~r~~ 262 (385)
.|||+.+++.+|+++|.+.
T Consensus 21 ~nlp~~~t~~~l~~~F~~~ 39 (105)
T 1x5u_A 21 GGLDEKVSEPLLWELFLQA 39 (105)
T ss_dssp ECCCTTCCHHHHHHHHHTT
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 6999999999999999876
No 272
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=21.71 E-value=35 Score=25.43 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=18.9
Q ss_pred eccCCCCccccHHHHHHHhccc
Q 016658 241 VDASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 241 v~~~~lp~~v~wqdlkd~~r~~ 262 (385)
|.+.|||+.+++.+|+++|.+.
T Consensus 20 l~V~nLp~~~t~~~l~~~F~~~ 41 (101)
T 1fj7_A 20 LFIGNLNPNKSVAELKVAISEL 41 (101)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHh
Confidence 3447999999999999999865
No 273
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.67 E-value=37 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.++..+|+++|.+.
T Consensus 20 v~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqg_A 20 VLGLPWKTTEQDLKEYFSTF 39 (103)
T ss_dssp EESCCSSCCHHHHHHHHGGG
T ss_pred EEcCCCcCCHHHHHHHHHhc
Confidence 36999999999999999875
No 274
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=21.44 E-value=2.4e+02 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=18.4
Q ss_pred ccCCCCccccHHHHHHHhccc
Q 016658 242 DASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 242 ~~~~lp~~v~wqdlkd~~r~~ 262 (385)
.+.|||..+++.+|+++|.+.
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~~ 64 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLPF 64 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTTS
T ss_pred EEeCCCCCCCHHHHHHHHHhc
Confidence 347999999999999999865
No 275
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.31 E-value=40 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 20 V~nlp~~~t~~~l~~~f~~~ 39 (103)
T 2cq3_A 20 VSNIPFRFRDPDLRQMFGQF 39 (103)
T ss_dssp EESCCTTCCHHHHHHHGGGT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999875
No 276
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.14 E-value=1.2e+02 Score=31.27 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=41.4
Q ss_pred ccCCcCCChhHHHHHhc----cCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 016658 114 DSLSRNVNEGHLREIFS----NFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170 (385)
Q Consensus 114 gnLp~~vte~dL~~~F~----~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l 170 (385)
+..+...+--||..+|- .+|-|+++.|..-+. -....++++.|.+.++|.+++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34455566668888883 578899888766554 334567899999999999988766
No 277
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.76 E-value=2e+02 Score=19.47 Aligned_cols=56 Identities=11% Similarity=-0.020 Sum_probs=41.3
Q ss_pred cceeeeccCCcCCChhHHHHHhccCCceEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 016658 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170 (385)
Q Consensus 108 ~~~vfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~srG~aFVeF~~~e~A~~Al~~l 170 (385)
..++.|.++...--...++..+.. ..|..+.+-. ..+-+.|+|.+.+....+|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~------~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL------NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS------SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc------cCCEEEEEECCHHHHHHHHHHc
Confidence 356788898887778889998888 7788877743 2346788888666677777653
No 278
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.58 E-value=42 Score=25.12 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=18.1
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..++..+|+++|.+.
T Consensus 18 V~nLp~~~t~~~l~~~f~~~ 37 (103)
T 2dnm_A 18 VDNLTYRTSPDSLRRVFEKY 37 (103)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999876
No 279
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.56 E-value=41 Score=25.74 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=18.0
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||+.++..+|+++|.+.
T Consensus 30 V~nlp~~~t~~~l~~~F~~~ 49 (114)
T 2cq4_A 30 CMQLAARIRPRDLEDFFSAV 49 (114)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 36999999999999999875
No 280
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=20.24 E-value=41 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.9
Q ss_pred cCCCCccccHHHHHHHhccc
Q 016658 243 ASSLPFVVDWNLLIAEVRPL 262 (385)
Q Consensus 243 ~~~lp~~v~wqdlkd~~r~~ 262 (385)
+.|||..+++.+|+++|.+.
T Consensus 30 V~nLp~~~t~~~l~~~F~~~ 49 (115)
T 2cpz_A 30 IYHLPQEFGDQDLLQMFMPF 49 (115)
T ss_dssp EESCCSSCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 36999999999999999865
Done!