BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016659
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H5K|A Chain A, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3H5K|B Chain B, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3LE7|A Chain A, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
pdb|3LE7|B Chain B, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
Length = 261
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 299 NAKTLGYADPFKVCCGYHENYDHVWCGNKATINNTEVYGASCKDPSKSISWDGVHYT 355
N +GY+DPF C YH ++ + + + NT +S +D +K I+++ ++ T
Sbjct: 70 NLYVMGYSDPFNGNCRYHI-FNDITGTERTNVENTLCSSSSSRD-AKPINYNSLYST 124
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 304 GYADPFKVCCGYHENY-DHVWCGNKATINNTEVYGASCKDPSKSISWDGVHYTQAANQWV 362
G A+P +N + GN T+N T S DPSK + D VH T + +
Sbjct: 249 GMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLI 308
Query: 363 ANHTLYGSLTDPPIPIT 379
A++T SL P +T
Sbjct: 309 ADYTY--SLLSAPWELT 323
>pdb|2VTY|A Chain A, Vaccinia Virus Anti-Apoptotic F1l Is A Novel Bcl-2-Like
Domain Swapped Dimer
Length = 182
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 233 LPTNFFYNHNPPPGYLDDHGCVKDQNNMAVEFNRQLKERVIKLRTELPEAAVTYVDVYAT 292
LP N Y + LD +D MAV + K+R+ L +LP +Y+D+
Sbjct: 33 LPENMVYRFDKSTNILDYLSTERDHVMMAVRYYMS-KQRLDDLYRQLPTKTRSYIDIINI 91
Query: 293 KYDLIGN 299
D + N
Sbjct: 92 YCDKVSN 98
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 244 PPGYLDDHGCVKDQNNMAVEFNRQLKE 270
PP DD G +K Q + E NRQLK+
Sbjct: 184 PP--FDDPGVIKGQGTIGTEINRQLKD 208
>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
Length = 438
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 262 VEFNRQLKERVIKLRTELPEAAVTYVDVYATKYDLIGNA---KTLGYADPFKVCCGYHEN 318
+E+ + L++R+IKLR A + ++DVY T IG A AD + +
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT----IGAAFDVDIKAMADYIQTLAEAAKP 267
Query: 319 YDHVWCGNKATINNTEVYGASCKDPSKSISWDGVHYTQAANQW 361
+ H+ + + + + +D + GV A++W
Sbjct: 268 F-HLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEW 309
>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex.
pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex
Length = 413
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 262 VEFNRQLKERVIKLRTELPEAAVTYVDVYAT 292
+E+ + L++R+IKLR A + ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
Length = 438
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 262 VEFNRQLKERVIKLRTELPEAAVTYVDVYAT 292
+E+ + L++R+IKLR A + ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|1KD0|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure.
pdb|1KD0|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure
Length = 413
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 262 VEFNRQLKERVIKLRTELPEAAVTYVDVYAT 292
+E+ + L++R+IKLR A + ++DVY T
Sbjct: 212 LEYVKWLRDRIIKLRVREDYAPIFHIDVYGT 242
>pdb|4A7K|A Chain A, Bifunctional Aldos-2-Ulose Dehydratase
pdb|4A7Y|A Chain A, Active Site Metal Depleted Aldos-2-Ulose Dehydratase
pdb|4A7Z|A Chain A, Complex Of Bifunctional Aldos-2-ulose Dehydratase With The
Reaction Intermediate Ascopyrone M
Length = 900
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 169 DFAKALYTFDIGQNDLSVGFRKMSFDQLRVALPNIVNQLASAVQNIYQQGGRAFWIHNTG 228
DF A++ DI +N GF + I +Q S++ +I+ GGR W+ N G
Sbjct: 92 DFPVAMHYADITKN----GFNDVI----------ITDQYGSSMDDIWAYGGRVSWLENPG 137
Query: 229 PI 230
+
Sbjct: 138 EL 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,953,665
Number of Sequences: 62578
Number of extensions: 580448
Number of successful extensions: 1041
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1034
Number of HSP's gapped (non-prelim): 12
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)