Query 016663
Match_columns 385
No_of_seqs 282 out of 2479
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 17:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.1E-57 3.7E-62 423.6 28.9 290 82-375 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 5.7E-57 1.9E-61 419.8 24.7 282 87-377 3-288 (303)
3 2lck_A Mitochondrial uncouplin 100.0 4E-39 1.4E-43 299.4 12.5 231 35-283 57-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.1E-38 3.8E-43 295.7 14.2 236 35-281 60-297 (297)
5 3f2e_A SIRV coat protein; four 18.0 57 0.002 22.3 1.7 34 326-359 6-43 (100)
6 2acm_A Mucin-1; auto-catalytic 16.4 37 0.0013 21.9 0.4 20 130-149 40-59 (66)
7 3tgu_G UQCRQ, mitochondrial ub 10.4 2.4E+02 0.0081 19.5 3.2 32 252-283 37-68 (81)
8 3vjj_A P9-1; 3.00A {Rice black 10.0 1.2E+02 0.004 26.5 1.7 35 303-344 274-308 (368)
9 1y9i_A Low temperature require 7.0 3.4E+02 0.012 21.9 3.2 44 162-205 112-157 (178)
10 2a3d_A Protein (de novo three- 6.9 5.2E+02 0.018 16.3 3.4 15 309-323 9-23 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-57 Score=423.62 Aligned_cols=290 Identities=52% Similarity=0.862 Sum_probs=244.4
Q ss_pred chhhHHHHHHHHHHHHHHHHhhchHHHHHHHHHcCchhhhcCCCCCCCCcHHHHHhHHhhccccchhcccchhhHHhhhh
Q 016663 82 FAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFP 161 (385)
Q Consensus 82 ~~~~~~~~~aG~~a~~~~~~~~~Pld~iK~r~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~ 161 (385)
..+.+.+++||++||+++.++++|+|+||+|+|++....+. .....|+++++++++|+++||++|||||+.++++++++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI-SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSC-CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccccc-ccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 34678899999999999999999999999999998642111 11235899999999999999999999999999999999
Q ss_pred hhhhHHhHHHHHHHHhccc-CCCCCchhhhhhHhhhhHHHHHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHH
Q 016663 162 TQALNFAFKDYFKRLFNFK-KDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVY 240 (385)
Q Consensus 162 ~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~ 240 (385)
.++++|.+||.+|+.+... ...+.........+++|++||++++++++|+|+||+|+|++... ......|+++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~ 160 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--GAAQREFTGLGNCI 160 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--STTTCSCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--CCcCcCCCCHHHHH
Confidence 9999999999999954332 22222223456689999999999999999999999999997531 12245789999999
Q ss_pred HHHHHhhCcccccccchhHHHHHHHHHhHHHHHHHhhHHhHhcCCCCCchHHHHHHHHHHHhchhhhcchHHHHHHhHhh
Q 016663 241 RKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM 320 (385)
Q Consensus 241 ~~i~~~~G~~gly~G~~~~~lr~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~Pldviktr~q~ 320 (385)
++|+++||+++||||+.|+++|.+|.++++|.+||.+|+.+.+. .+.+....+++|.++|++++++++|+||||+|||.
T Consensus 161 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~ 239 (297)
T 1okc_A 161 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMM 239 (297)
T ss_dssp HHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 99999999999999999999999999999999999999977543 23456778999999999999999999999999998
Q ss_pred ccCC---CCCCCCHHHHHHHHHHhhChhhhccchHHHHHhhhhhhHHHHHHHHHHHHH
Q 016663 321 TSGE---AVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQLIV 375 (385)
Q Consensus 321 ~~~~---~~~~~~~~~~~~~i~r~eG~~g~yrG~~~~l~~~~~~~~~f~~ye~~~~~l 375 (385)
+... ...|.++++|+++|+|+||++|||||+.|+++|..+.++.|.+||.+|+++
T Consensus 240 ~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 240 QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHHHHHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhccceeeehHHHHHHhhC
Confidence 7532 346999999999999999999999999999999755444499999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.7e-57 Score=419.76 Aligned_cols=282 Identities=22% Similarity=0.373 Sum_probs=248.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHcCchhhhc--CCCCCCCCcHHHHHhHHhhccccchhcccchhhHHhhhhhhh
Q 016663 87 IDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKS--GRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQA 164 (385)
Q Consensus 87 ~~~~aG~~a~~~~~~~~~Pld~iK~r~Q~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 164 (385)
.+++||++|++++.++++|+|+||+|+|++...... ......|+++++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 368999999999999999999999999998642110 011235899999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHhcccCCCCCchhhhhhHhhhhHHHHHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHHHHH
Q 016663 165 LNFAFKDYFKRLFNFKKDRDGYWKWFAGNLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTM 244 (385)
Q Consensus 165 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (385)
++|.+||.+|+.+.+..+. ......+++|++||+++.++++|+|+||+|+|++... .....|+++++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~~----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~---~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEH----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA---GGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSS----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC---CCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc---CCCCCCCCHHHHHHHHH
Confidence 9999999999988654221 2345689999999999999999999999999998641 22457899999999999
Q ss_pred HhhCcccccccchhHHHHHHHHHhHHHHHHHhhHHhHhcCC-CCCchHHHHHHHHHHHhchhhhcchHHHHHHhHhhccC
Q 016663 245 KSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGK-LQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSG 323 (385)
Q Consensus 245 ~~~G~~gly~G~~~~~lr~~~~~~i~f~~ye~~k~~~~~~~-~~~~~~~~~~~g~~ag~~a~~~t~Pldviktr~q~~~~ 323 (385)
++||+++||||+.|+++|.+|.++++|.+||.+|+.+.+.. ..++....+++|++||++++++++|+||||+|||.+..
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999987643 34566788999999999999999999999999998753
Q ss_pred CCCCCCCHHHHHHHHHHhhChhhhccchHHHHHhhhhhhHH-HHHHHHHHHHHcc
Q 016663 324 EAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGV-LAGYDKLQLIVFG 377 (385)
Q Consensus 324 ~~~~~~~~~~~~~~i~r~eG~~g~yrG~~~~l~~~~~~~~~-f~~ye~~~~~l~~ 377 (385)
..|.++++|+++|+|+||++|||||+.|+++|.+|++++ |.+||.+|+.+.+
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999887 9999999987653
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4e-39 Score=299.43 Aligned_cols=231 Identities=21% Similarity=0.306 Sum_probs=186.3
Q ss_pred hhhcccccccccCccccc-cccccccccccccCCcccccccCCcccccchhhHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 016663 35 MYQRRGAYGNYSNAAFQY-PIVSAATTDLSMVPSTASAICVQAPAEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLLI 113 (385)
Q Consensus 35 ~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~a~~~~~~~~~Pld~iK~r~ 113 (385)
+++.+|+.++|+|..... .....+...++.+......+.... + ..+.+..+++|++||+++.++++|+|+||+|+
T Consensus 57 i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~--~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl 132 (303)
T 2lck_A 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS--E--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF 132 (303)
T ss_dssp HHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCC--S--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--c--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 456667666666653211 112344445555555444433221 1 25678899999999999999999999999999
Q ss_pred HcCchhhhcCCCCCCCCcHHHHHhHHhhccccchhcccchhhHHhhhhhhhhHHhHHHHHHHHhcccCCCCCchhhhhhH
Q 016663 114 QNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGN 193 (385)
Q Consensus 114 Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~ 193 (385)
|++... .....|++.++++++|+++||++|||||+.+++++++|.++++|.+||.+|+.+.+....+ ......
T Consensus 133 q~~~~~----~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~---~~~~~~ 205 (303)
T 2lck_A 133 QAQARA----GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT---DDLPCH 205 (303)
T ss_dssp HHSCSC----CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC---SCHHHH
T ss_pred hccccc----CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CchHHH
Confidence 998542 1123589999999999999999999999999999999999999999999999886543222 223467
Q ss_pred hhhhHHHHHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHHHHHHhhCcccccccchhHHHHHHHHHhHHHHH
Q 016663 194 LGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGM 273 (385)
Q Consensus 194 ~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~lr~~~~~~i~f~~ 273 (385)
+++|++||++++++++|+|+||+|+|++.. ..|+++++|+++|+++||+++||||+.|+++|.+|.+++.|.+
T Consensus 206 ~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ 278 (303)
T 2lck_A 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSAL-------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhccc-------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999753 3689999999999999999999999999999999999999999
Q ss_pred HHhhHHhHhc
Q 016663 274 YDSLKPVVLT 283 (385)
Q Consensus 274 ye~~k~~~~~ 283 (385)
||.+|+.+.+
T Consensus 279 ye~~k~~l~~ 288 (303)
T 2lck_A 279 YEQLKRALMA 288 (303)
T ss_dssp HHHHHSCCCC
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.1e-38 Score=295.69 Aligned_cols=236 Identities=17% Similarity=0.255 Sum_probs=178.7
Q ss_pred hhhcccccccccCccccc-cccccccccccccCCcccccccCCc-ccccchhhHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 016663 35 MYQRRGAYGNYSNAAFQY-PIVSAATTDLSMVPSTASAICVQAP-AEKGFAGFAIDFLMGGVSAAVSKTAAAPIERVKLL 112 (385)
Q Consensus 35 ~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~aG~~a~~~~~~~~~Pld~iK~r 112 (385)
+++.||+.++|+|..... .....+...++.+......+..... .+......+..+++|++||+++.++++|+|+||+|
T Consensus 60 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 139 (297)
T 1okc_A 60 IPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR 139 (297)
T ss_dssp HHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 456677666666654211 1122334444555444432222111 11112356789999999999999999999999999
Q ss_pred HHcCchhhhcCCCCCCCCcHHHHHhHHhhccccchhcccchhhHHhhhhhhhhHHhHHHHHHHHhcccCCCCCchhhhhh
Q 016663 113 IQNQDEMIKSGRLSEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAG 192 (385)
Q Consensus 113 ~Q~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~ 192 (385)
+|++.... .....|+++++++++|+++||++|||||+.+++++++|.++++|.+||.+|+.+.+..+ .....
T Consensus 140 lq~~~~~~---~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~-----~~~~~ 211 (297)
T 1okc_A 140 LAADVGKG---AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN-----VHIIV 211 (297)
T ss_dssp HHHCCCSS---TTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC-----SCHHH
T ss_pred HhccccCC---CcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----ccHHH
Confidence 99975321 11245899999999999999999999999999999999999999999999997754321 12345
Q ss_pred HhhhhHHHHHHHHHhhchHHHHHHHHhcCcchhhcCCCcccCcHHHHHHHHHHhhCcccccccchhHHHHHHHHHhHHHH
Q 016663 193 NLGSGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFG 272 (385)
Q Consensus 193 ~~~~g~~ag~~~~~i~~P~dviktr~q~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~lr~~~~~~i~f~ 272 (385)
.+++|++||++++++++|+|+||+|+|++.... .....|+++++|+++|+++||+++||||+.|+++|. +.+++.|.
T Consensus 212 ~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~--~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~ 288 (297)
T 1okc_A 212 SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK--GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLV 288 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC--GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeeh
Confidence 789999999999999999999999999875311 123479999999999999999999999999999996 57899999
Q ss_pred HHHhhHHhH
Q 016663 273 MYDSLKPVV 281 (385)
Q Consensus 273 ~ye~~k~~~ 281 (385)
+||.+|+++
T Consensus 289 ~ye~~k~~l 297 (297)
T 1okc_A 289 LYDEIKKFV 297 (297)
T ss_dssp HHHTC----
T ss_pred HHHHHHhhC
Confidence 999998753
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=18.03 E-value=57 Score=22.25 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHhhCh----hhhccchHHHHHhhh
Q 016663 326 VKYKSSLDAFSQILKNEGA----KSLFKGAGANILRAV 359 (385)
Q Consensus 326 ~~~~~~~~~~~~i~r~eG~----~g~yrG~~~~l~~~~ 359 (385)
+++.+.-+-+..++.+-|+ |+.|.|++....|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 3566666677777888776 668999988877765
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=16.42 E-value=37 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.1
Q ss_pred CcHHHHHhHHhhccccchhc
Q 016663 130 KGIGDCFKRTMKDEGIVALW 149 (385)
Q Consensus 130 ~~~~~~~~~i~~~~G~~gly 149 (385)
+++.+.+.+|++++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788899999999998886
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=10.38 E-value=2.4e+02 Score=19.55 Aligned_cols=32 Identities=9% Similarity=-0.026 Sum_probs=24.2
Q ss_pred ccccchhHHHHHHHHHhHHHHHHHhhHHhHhc
Q 016663 252 LYRGFNISCVGIIVYRGLYFGMYDSLKPVVLT 283 (385)
Q Consensus 252 ly~G~~~~~lr~~~~~~i~f~~ye~~k~~~~~ 283 (385)
.+|-+.-.++..+|...+.+.+|+..++....
T Consensus 37 ~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 37 VWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33445667788889999999999998877654
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=9.96 E-value=1.2e+02 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.8
Q ss_pred chhhhcchHHHHHHhHhhccCCCCCCCCHHHHHHHHHHhhCh
Q 016663 303 GAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGA 344 (385)
Q Consensus 303 ~a~~~t~Pldviktr~q~~~~~~~~~~~~~~~~~~i~r~eG~ 344 (385)
++++=-||||.+|-.++.- .+....+++.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~Sl-------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL-------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC-------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh-------ccChHHHHHHHHhcCc
Confidence 3456679999998877632 3445778999999984
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=6.97 E-value=3.4e+02 Score=21.86 Aligned_cols=44 Identities=20% Similarity=0.062 Sum_probs=24.4
Q ss_pred hhhhHHhHHHHHHHHhcccCCC--CCchhhhhhHhhhhHHHHHHHH
Q 016663 162 TQALNFAFKDYFKRLFNFKKDR--DGYWKWFAGNLGSGGAAGASSL 205 (385)
Q Consensus 162 ~~~~~f~~ye~~k~~~~~~~~~--~~~~~~~~~~~~~g~~ag~~~~ 205 (385)
...+.|..||..|-......++ ......+.-.+++|..|++++.
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 4556778888887543322221 2222334456777777776553
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=6.91 E-value=5.2e+02 Score=16.29 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.1
Q ss_pred chHHHHHHhHhhccC
Q 016663 309 YPIDTVRRRMMMTSG 323 (385)
Q Consensus 309 ~Pldviktr~q~~~~ 323 (385)
.-+..||||+|.-.+
T Consensus 9 qrlaaiktrlqalgg 23 (73)
T 2a3d_A 9 QRLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 456789999997543
Done!