Query 016664
Match_columns 385
No_of_seqs 150 out of 231
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 2E-81 4.3E-86 627.7 28.4 343 33-380 1-345 (447)
2 PF04111 APG6: Autophagy prote 100.0 1.8E-68 3.8E-73 524.6 19.2 217 168-385 1-221 (314)
3 PF10186 Atg14: UV radiation r 99.3 1.4E-09 3E-14 103.7 23.7 209 166-377 10-234 (302)
4 KOG2751 Beclin-like protein [S 99.0 5.1E-10 1.1E-14 114.2 7.2 245 102-376 35-306 (447)
5 KOG2896 UV radiation resistanc 98.3 0.00013 2.8E-09 74.1 20.7 119 250-378 136-270 (377)
6 COG1579 Zn-ribbon protein, pos 97.0 0.038 8.2E-07 53.8 15.6 28 177-204 11-38 (239)
7 TIGR02169 SMC_prok_A chromosom 96.8 0.082 1.8E-06 59.4 19.3 68 232-299 435-502 (1164)
8 KOG0250 DNA repair protein RAD 96.8 0.088 1.9E-06 60.1 19.1 82 222-303 384-466 (1074)
9 PF04111 APG6: Autophagy prote 96.5 0.06 1.3E-06 54.0 14.2 162 189-356 42-256 (314)
10 PRK03918 chromosome segregatio 96.2 0.29 6.2E-06 54.3 18.5 24 263-286 304-327 (880)
11 PF04156 IncA: IncA protein; 96.2 0.39 8.4E-06 43.8 16.2 98 176-279 88-185 (191)
12 TIGR02169 SMC_prok_A chromosom 96.0 0.43 9.2E-06 53.8 18.8 21 324-344 526-547 (1164)
13 PF04849 HAP1_N: HAP1 N-termin 96.0 0.45 9.7E-06 48.0 16.8 128 176-303 160-306 (306)
14 PHA02562 46 endonuclease subun 95.9 0.25 5.4E-06 51.8 15.2 14 166-179 283-296 (562)
15 COG1196 Smc Chromosome segrega 95.8 0.18 3.9E-06 58.4 14.9 96 240-343 441-540 (1163)
16 COG1579 Zn-ribbon protein, pos 95.7 0.87 1.9E-05 44.5 16.9 101 215-327 94-202 (239)
17 PRK11637 AmiB activator; Provi 95.7 0.27 5.9E-06 50.7 14.3 73 179-257 43-115 (428)
18 PRK11637 AmiB activator; Provi 95.4 0.92 2E-05 46.9 17.1 66 222-287 175-240 (428)
19 KOG0979 Structural maintenance 95.4 1 2.3E-05 51.5 18.5 114 170-284 197-315 (1072)
20 TIGR02168 SMC_prok_B chromosom 95.4 1.3 2.8E-05 49.7 19.4 7 31-37 26-32 (1179)
21 KOG0996 Structural maintenance 95.2 0.74 1.6E-05 53.3 16.7 55 226-280 537-591 (1293)
22 PF08317 Spc7: Spc7 kinetochor 95.1 2.2 4.8E-05 42.8 18.4 28 144-171 79-106 (325)
23 PF07888 CALCOCO1: Calcium bin 94.8 1.7 3.6E-05 47.1 17.3 17 99-115 79-95 (546)
24 KOG0994 Extracellular matrix g 94.8 1.1 2.3E-05 52.2 16.3 45 269-313 1263-1307(1758)
25 PF00261 Tropomyosin: Tropomyo 94.8 1.9 4.1E-05 41.3 16.0 80 222-301 125-204 (237)
26 KOG0250 DNA repair protein RAD 94.7 1.4 3.1E-05 50.7 17.3 76 222-297 377-453 (1074)
27 PF11932 DUF3450: Protein of u 94.7 4.3 9.2E-05 39.1 20.2 58 296-355 162-234 (251)
28 PRK09039 hypothetical protein; 94.7 2.1 4.5E-05 43.6 16.9 16 179-194 49-64 (343)
29 PHA02562 46 endonuclease subun 94.6 1.4 3E-05 46.4 15.9 11 147-157 151-161 (562)
30 PF04156 IncA: IncA protein; 94.5 3.7 8E-05 37.4 16.9 66 180-251 85-150 (191)
31 COG4942 Membrane-bound metallo 94.5 1 2.2E-05 47.3 14.4 85 167-261 26-110 (420)
32 PF13851 GAS: Growth-arrest sp 94.4 4.6 0.0001 38.1 17.9 26 177-202 28-53 (201)
33 PF09789 DUF2353: Uncharacteri 94.4 3.8 8.2E-05 41.7 17.9 129 174-303 84-232 (319)
34 smart00787 Spc7 Spc7 kinetocho 94.3 4.5 9.7E-05 40.9 18.1 157 145-301 75-260 (312)
35 PF07888 CALCOCO1: Calcium bin 94.3 2.5 5.4E-05 45.8 17.1 15 331-345 344-358 (546)
36 COG1196 Smc Chromosome segrega 94.2 2.2 4.8E-05 49.7 18.0 55 145-200 150-217 (1163)
37 PRK02224 chromosome segregatio 94.2 2.2 4.7E-05 47.7 17.2 28 269-296 663-690 (880)
38 PF00261 Tropomyosin: Tropomyo 94.2 5.5 0.00012 38.2 18.2 84 217-300 127-210 (237)
39 PF10168 Nup88: Nuclear pore c 94.2 2.4 5.3E-05 47.3 17.4 169 165-356 529-708 (717)
40 TIGR01843 type_I_hlyD type I s 94.1 2.5 5.3E-05 42.3 15.9 21 280-300 246-266 (423)
41 PRK02224 chromosome segregatio 94.0 1.6 3.6E-05 48.6 15.9 25 275-299 594-618 (880)
42 PRK04863 mukB cell division pr 94.0 2.4 5.1E-05 50.9 17.8 39 268-306 392-430 (1486)
43 KOG2391 Vacuolar sorting prote 93.8 2.1 4.6E-05 43.9 14.7 55 189-249 224-278 (365)
44 TIGR02894 DNA_bind_RsfA transc 93.7 1.9 4E-05 40.0 12.9 18 176-193 54-71 (161)
45 PF10146 zf-C4H2: Zinc finger- 93.7 3.7 7.9E-05 39.9 15.6 35 219-253 41-75 (230)
46 COG4026 Uncharacterized protei 93.7 0.43 9.4E-06 46.5 9.1 70 218-287 143-212 (290)
47 KOG4360 Uncharacterized coiled 93.6 2.5 5.4E-05 45.5 15.3 124 188-314 193-316 (596)
48 TIGR01843 type_I_hlyD type I s 93.5 7.7 0.00017 38.8 18.3 15 313-327 278-292 (423)
49 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.5 4.9 0.00011 35.3 17.5 43 257-299 89-131 (132)
50 PF09755 DUF2046: Uncharacteri 93.4 9.4 0.0002 38.8 18.4 13 338-350 180-192 (310)
51 KOG0995 Centromere-associated 93.2 4.6 0.0001 43.9 16.7 62 222-283 292-363 (581)
52 PF11559 ADIP: Afadin- and alp 93.2 5.8 0.00013 35.2 15.2 6 295-300 141-146 (151)
53 KOG0243 Kinesin-like protein [ 93.2 3.1 6.7E-05 48.0 16.2 73 216-288 482-554 (1041)
54 PF10146 zf-C4H2: Zinc finger- 93.2 5 0.00011 38.9 15.6 67 228-294 36-102 (230)
55 PF10481 CENP-F_N: Cenp-F N-te 93.1 5.1 0.00011 40.2 15.6 113 178-307 20-136 (307)
56 PF08614 ATG16: Autophagy prot 93.1 0.72 1.6E-05 42.9 9.5 22 179-200 77-98 (194)
57 PF15619 Lebercilin: Ciliary p 93.0 6.3 0.00014 37.3 15.7 13 181-193 24-36 (194)
58 PRK04778 septation ring format 93.0 3.3 7.2E-05 44.6 15.6 31 170-200 280-310 (569)
59 TIGR01000 bacteriocin_acc bact 93.0 4.3 9.2E-05 42.3 15.9 26 179-204 175-200 (457)
60 PF06156 DUF972: Protein of un 92.9 0.44 9.4E-06 41.1 7.2 15 304-319 81-95 (107)
61 PRK10884 SH3 domain-containing 92.9 1.9 4.1E-05 41.1 12.1 80 177-265 94-173 (206)
62 PRK10884 SH3 domain-containing 92.7 3 6.4E-05 39.8 13.2 25 279-303 145-169 (206)
63 PF12718 Tropomyosin_1: Tropom 92.7 7.2 0.00016 35.0 15.7 65 229-300 78-142 (143)
64 PF12325 TMF_TATA_bd: TATA ele 92.6 4 8.6E-05 36.0 12.8 31 175-205 15-45 (120)
65 PRK04863 mukB cell division pr 92.5 3.7 8.1E-05 49.4 16.3 37 266-302 442-478 (1486)
66 COG4985 ABC-type phosphate tra 92.4 4.1 8.9E-05 40.1 13.7 103 213-342 160-270 (289)
67 KOG0995 Centromere-associated 92.3 13 0.00028 40.7 18.5 30 176-205 259-288 (581)
68 KOG0971 Microtubule-associated 92.2 27 0.00058 40.4 21.9 27 270-296 329-355 (1243)
69 PF08317 Spc7: Spc7 kinetochor 92.2 13 0.00028 37.4 17.7 29 175-203 148-176 (325)
70 PF05266 DUF724: Protein of un 92.1 11 0.00023 35.6 16.1 56 235-290 128-183 (190)
71 COG2433 Uncharacterized conser 92.1 3.3 7.1E-05 45.4 13.9 45 216-260 421-465 (652)
72 PRK04778 septation ring format 91.9 6 0.00013 42.7 15.9 43 242-284 380-422 (569)
73 PF04012 PspA_IM30: PspA/IM30 91.9 11 0.00024 35.3 16.5 47 250-296 103-149 (221)
74 TIGR03185 DNA_S_dndD DNA sulfu 91.9 6.2 0.00013 43.1 16.1 64 185-255 184-247 (650)
75 KOG0977 Nuclear envelope prote 91.9 11 0.00024 41.0 17.6 17 181-197 111-127 (546)
76 PF00038 Filament: Intermediat 91.7 14 0.0003 36.1 19.6 71 222-295 214-284 (312)
77 PF13851 GAS: Growth-arrest sp 91.6 13 0.00027 35.3 16.1 26 267-292 108-133 (201)
78 KOG0964 Structural maintenance 91.5 7.7 0.00017 44.8 16.4 141 213-370 414-582 (1200)
79 COG2433 Uncharacterized conser 91.4 3.8 8.2E-05 44.9 13.5 74 219-292 431-507 (652)
80 PF10473 CENP-F_leu_zip: Leuci 91.4 11 0.00023 34.2 16.4 79 180-258 21-100 (140)
81 PRK01156 chromosome segregatio 91.2 9.9 0.00022 42.8 17.3 35 152-188 151-185 (895)
82 PRK01156 chromosome segregatio 91.2 9.3 0.0002 43.0 17.0 34 268-301 411-444 (895)
83 PF09789 DUF2353: Uncharacteri 91.1 17 0.00036 37.2 17.0 167 180-355 13-222 (319)
84 PF10212 TTKRSYEDQ: Predicted 90.9 13 0.00027 40.3 16.6 78 222-302 439-516 (518)
85 PF10498 IFT57: Intra-flagella 90.8 9.9 0.00021 39.2 15.5 77 166-258 217-293 (359)
86 TIGR00606 rad50 rad50. This fa 90.8 6.4 0.00014 46.5 15.9 15 311-325 1149-1164(1311)
87 TIGR02680 conserved hypothetic 90.7 14 0.0003 44.2 18.5 10 150-159 180-189 (1353)
88 KOG0999 Microtubule-associated 90.7 10 0.00023 41.4 15.8 31 216-246 155-185 (772)
89 TIGR00606 rad50 rad50. This fa 90.7 16 0.00034 43.4 18.8 38 213-250 825-862 (1311)
90 KOG0161 Myosin class II heavy 90.6 12 0.00025 46.3 17.9 35 223-257 1075-1109(1930)
91 PF09755 DUF2046: Uncharacteri 90.4 14 0.00029 37.7 15.6 61 228-288 139-200 (310)
92 PF06120 Phage_HK97_TLTM: Tail 90.4 12 0.00025 38.0 15.2 72 180-252 38-109 (301)
93 KOG4673 Transcription factor T 90.4 28 0.00061 39.2 18.9 50 154-205 389-438 (961)
94 KOG0804 Cytoplasmic Zn-finger 90.2 19 0.00041 38.5 16.9 8 66-73 182-189 (493)
95 PF15285 BH3: Beclin-1 BH3 dom 90.1 0.12 2.7E-06 33.8 0.7 19 144-162 7-25 (25)
96 KOG0161 Myosin class II heavy 90.0 19 0.00042 44.6 19.0 12 70-81 658-671 (1930)
97 PF10473 CENP-F_leu_zip: Leuci 89.9 10 0.00022 34.4 12.9 22 182-203 9-30 (140)
98 PRK09039 hypothetical protein; 89.9 14 0.0003 37.7 15.5 14 341-354 242-255 (343)
99 PF12325 TMF_TATA_bd: TATA ele 89.8 13 0.00029 32.7 16.2 39 217-255 23-61 (120)
100 KOG2264 Exostosin EXT1L [Signa 89.6 2.9 6.4E-05 45.7 10.7 70 229-312 91-160 (907)
101 PF05384 DegS: Sensor protein 89.5 17 0.00037 33.5 16.4 63 216-278 47-117 (159)
102 PF00038 Filament: Intermediat 89.4 22 0.00048 34.7 17.8 34 267-300 104-137 (312)
103 PF10168 Nup88: Nuclear pore c 89.4 31 0.00067 38.7 18.9 27 272-298 638-664 (717)
104 KOG0999 Microtubule-associated 89.1 17 0.00037 39.9 15.9 67 218-284 108-188 (772)
105 PF15035 Rootletin: Ciliary ro 89.0 20 0.00044 33.6 15.7 82 175-256 15-113 (182)
106 PF09730 BicD: Microtubule-ass 88.8 22 0.00048 40.0 17.1 36 216-251 82-117 (717)
107 TIGR03185 DNA_S_dndD DNA sulfu 88.6 36 0.00079 37.2 18.6 41 217-257 428-468 (650)
108 PF15070 GOLGA2L5: Putative go 88.6 23 0.0005 39.1 17.0 24 336-359 198-221 (617)
109 COG5185 HEC1 Protein involved 88.5 25 0.00054 38.0 16.4 26 142-172 153-178 (622)
110 PF09726 Macoilin: Transmembra 88.4 20 0.00043 40.2 16.5 26 232-257 546-571 (697)
111 KOG0964 Structural maintenance 88.4 22 0.00048 41.3 16.8 63 223-285 410-472 (1200)
112 TIGR03752 conj_TIGR03752 integ 88.4 6.9 0.00015 41.8 12.4 75 226-300 68-143 (472)
113 COG4942 Membrane-bound metallo 88.3 10 0.00022 40.0 13.4 8 294-301 119-126 (420)
114 KOG1853 LIS1-interacting prote 88.3 25 0.00054 35.2 15.3 79 224-305 52-133 (333)
115 PF06005 DUF904: Protein of un 88.3 12 0.00026 30.2 11.6 42 221-262 8-49 (72)
116 KOG0933 Structural maintenance 88.2 25 0.00055 40.9 17.1 17 72-88 571-587 (1174)
117 TIGR02231 conserved hypothetic 88.1 9.1 0.0002 40.6 13.3 36 266-301 138-173 (525)
118 PRK11519 tyrosine kinase; Prov 88.1 48 0.001 36.9 22.1 33 268-300 365-397 (719)
119 KOG1962 B-cell receptor-associ 88.0 9.2 0.0002 37.0 12.0 37 222-258 149-185 (216)
120 PF06160 EzrA: Septation ring 87.9 21 0.00045 38.6 16.0 179 170-353 276-485 (560)
121 PF09726 Macoilin: Transmembra 87.9 34 0.00074 38.4 17.9 28 177-204 419-446 (697)
122 TIGR01010 BexC_CtrB_KpsE polys 87.7 33 0.00071 34.5 18.6 126 174-300 168-305 (362)
123 PF10211 Ax_dynein_light: Axon 87.7 24 0.00053 33.0 14.5 67 226-298 122-188 (189)
124 KOG0804 Cytoplasmic Zn-finger 87.4 24 0.00052 37.7 15.4 17 281-297 429-445 (493)
125 PRK00409 recombination and DNA 87.2 13 0.00027 42.0 14.3 13 20-32 299-311 (782)
126 PF00769 ERM: Ezrin/radixin/mo 87.1 20 0.00044 34.8 14.0 38 223-260 60-97 (246)
127 TIGR01069 mutS2 MutS2 family p 86.9 9.6 0.00021 42.9 13.2 12 21-32 295-306 (771)
128 KOG0982 Centrosomal protein Nu 86.9 28 0.00061 37.1 15.5 28 275-302 362-389 (502)
129 PF07106 TBPIP: Tat binding pr 86.6 11 0.00024 34.1 11.2 69 170-238 66-137 (169)
130 PRK09841 cryptic autophosphory 86.5 59 0.0013 36.2 22.9 126 172-301 263-398 (726)
131 KOG0288 WD40 repeat protein Ti 86.4 27 0.00058 37.1 15.0 107 180-286 10-117 (459)
132 PF09730 BicD: Microtubule-ass 86.0 37 0.00079 38.3 16.8 75 216-290 68-145 (717)
133 PRK08032 fliD flagellar cappin 85.9 3.3 7.1E-05 43.7 8.4 52 235-289 410-461 (462)
134 PF12718 Tropomyosin_1: Tropom 85.9 26 0.00056 31.5 17.0 32 221-252 32-63 (143)
135 TIGR02894 DNA_bind_RsfA transc 85.8 15 0.00033 34.1 11.7 31 227-257 100-130 (161)
136 PF12329 TMF_DNA_bd: TATA elem 85.7 14 0.0003 29.7 10.1 27 228-254 16-42 (74)
137 PF11180 DUF2968: Protein of u 85.7 28 0.00061 33.2 13.6 75 222-303 110-184 (192)
138 PRK13169 DNA replication intia 85.7 3.4 7.3E-05 36.0 7.0 15 304-319 78-92 (110)
139 PF14662 CCDC155: Coiled-coil 85.5 35 0.00076 32.6 16.6 36 221-256 78-113 (193)
140 KOG4438 Centromere-associated 85.4 38 0.00082 36.0 15.6 103 179-292 138-242 (446)
141 KOG3647 Predicted coiled-coil 85.4 40 0.00087 34.0 15.0 34 143-176 53-86 (338)
142 PF04849 HAP1_N: HAP1 N-termin 85.4 43 0.00092 34.1 15.6 87 213-299 163-267 (306)
143 TIGR03007 pepcterm_ChnLen poly 85.4 51 0.0011 34.4 21.6 100 267-377 349-465 (498)
144 KOG2072 Translation initiation 85.1 34 0.00073 39.2 15.9 150 152-301 521-698 (988)
145 TIGR03752 conj_TIGR03752 integ 85.0 11 0.00024 40.3 11.7 32 228-259 63-94 (472)
146 TIGR02231 conserved hypothetic 84.7 13 0.00027 39.5 12.2 28 263-290 142-169 (525)
147 PF10186 Atg14: UV radiation r 84.7 38 0.00082 32.3 18.4 139 219-361 72-224 (302)
148 KOG1899 LAR transmembrane tyro 84.6 21 0.00045 39.8 13.6 16 365-380 329-344 (861)
149 PF11932 DUF3450: Protein of u 84.4 38 0.00083 32.5 14.4 31 221-251 53-83 (251)
150 PRK06798 fliD flagellar cappin 84.4 4.1 8.9E-05 42.8 8.3 54 232-288 380-433 (440)
151 PF15066 CAGE1: Cancer-associa 84.4 54 0.0012 35.4 16.2 39 257-295 487-525 (527)
152 TIGR02680 conserved hypothetic 84.3 41 0.00089 40.3 17.3 23 226-248 299-321 (1353)
153 PF05278 PEARLI-4: Arabidopsis 84.2 19 0.00042 35.9 12.3 153 144-303 94-265 (269)
154 KOG0977 Nuclear envelope prote 84.0 36 0.00078 37.2 15.2 27 179-205 38-64 (546)
155 TIGR01069 mutS2 MutS2 family p 84.0 17 0.00036 41.1 13.3 7 332-338 661-667 (771)
156 PF05700 BCAS2: Breast carcino 83.8 10 0.00022 36.1 10.1 43 216-258 174-216 (221)
157 KOG0996 Structural maintenance 83.8 39 0.00085 40.0 16.1 19 318-336 613-633 (1293)
158 PF00769 ERM: Ezrin/radixin/mo 83.5 46 0.001 32.4 16.7 73 223-295 46-118 (246)
159 KOG4674 Uncharacterized conser 83.2 59 0.0013 40.2 17.8 119 178-299 131-250 (1822)
160 PF12128 DUF3584: Protein of u 83.1 63 0.0014 38.2 18.0 8 37-44 56-63 (1201)
161 PF12128 DUF3584: Protein of u 83.1 67 0.0015 38.0 18.2 19 336-354 774-792 (1201)
162 PRK11519 tyrosine kinase; Prov 83.0 23 0.0005 39.3 13.8 31 174-204 265-295 (719)
163 PRK00409 recombination and DNA 82.9 27 0.00057 39.5 14.3 19 142-160 388-406 (782)
164 PF10267 Tmemb_cc2: Predicted 82.9 32 0.00069 36.1 13.9 31 175-205 211-241 (395)
165 PF06005 DUF904: Protein of un 82.8 23 0.00051 28.5 11.4 27 231-257 25-51 (72)
166 PF05667 DUF812: Protein of un 82.7 72 0.0016 35.2 17.1 60 243-302 424-483 (594)
167 PF15619 Lebercilin: Ciliary p 82.7 44 0.00096 31.6 17.6 33 268-300 152-184 (194)
168 PLN03188 kinesin-12 family pro 82.4 69 0.0015 38.4 17.4 31 243-277 1160-1191(1320)
169 PF05266 DUF724: Protein of un 82.3 45 0.00098 31.5 15.8 109 185-293 64-179 (190)
170 PF02403 Seryl_tRNA_N: Seryl-t 82.3 25 0.00055 29.3 10.8 72 215-290 27-98 (108)
171 KOG1029 Endocytic adaptor prot 82.2 18 0.00039 41.2 12.2 8 319-326 632-639 (1118)
172 PRK09841 cryptic autophosphory 82.1 23 0.0005 39.3 13.4 22 227-248 307-328 (726)
173 KOG4673 Transcription factor T 82.0 59 0.0013 36.8 15.9 13 147-159 409-421 (961)
174 TIGR01000 bacteriocin_acc bact 81.9 70 0.0015 33.4 17.6 25 275-299 238-262 (457)
175 KOG0980 Actin-binding protein 81.8 1.1E+02 0.0024 35.5 24.6 81 222-302 436-516 (980)
176 PF15254 CCDC14: Coiled-coil d 81.6 50 0.0011 37.6 15.3 77 222-301 467-543 (861)
177 TIGR03007 pepcterm_ChnLen poly 81.5 59 0.0013 34.0 15.5 28 176-203 161-188 (498)
178 KOG0612 Rho-associated, coiled 81.3 49 0.0011 39.3 15.7 12 189-200 514-525 (1317)
179 KOG0979 Structural maintenance 81.1 47 0.001 38.7 15.3 37 218-254 263-299 (1072)
180 KOG0980 Actin-binding protein 80.9 1E+02 0.0022 35.7 17.6 9 320-328 563-571 (980)
181 KOG0239 Kinesin (KAR3 subfamil 80.9 66 0.0014 36.0 16.2 62 222-283 232-293 (670)
182 PF10234 Cluap1: Clusterin-ass 80.8 44 0.00095 33.4 13.4 34 218-251 184-217 (267)
183 PF05667 DUF812: Protein of un 80.6 53 0.0011 36.2 15.2 26 178-203 330-355 (594)
184 COG1382 GimC Prefoldin, chaper 80.5 38 0.00082 30.1 11.5 25 179-203 16-40 (119)
185 COG1345 FliD Flagellar capping 80.4 6.2 0.00013 42.2 7.9 49 237-288 428-476 (483)
186 PF05701 WEMBL: Weak chloropla 80.3 90 0.0019 33.6 17.2 64 239-302 380-443 (522)
187 KOG0976 Rho/Rac1-interacting s 79.7 67 0.0015 37.0 15.5 27 221-247 138-164 (1265)
188 PF03961 DUF342: Protein of un 79.5 18 0.00038 37.9 10.9 87 162-248 320-406 (451)
189 COG5185 HEC1 Protein involved 79.5 99 0.0022 33.6 17.8 57 223-279 336-395 (622)
190 PF08172 CASP_C: CASP C termin 79.4 9.3 0.0002 37.5 8.2 38 267-304 87-124 (248)
191 PRK12704 phosphodiesterase; Pr 79.2 99 0.0022 33.5 18.6 11 310-320 215-225 (520)
192 PRK11281 hypothetical protein; 79.2 60 0.0013 38.4 15.8 26 179-204 83-108 (1113)
193 PF11414 Suppressor_APC: Adeno 79.1 34 0.00075 28.4 10.3 53 216-268 6-60 (84)
194 PF03962 Mnd1: Mnd1 family; I 78.9 25 0.00054 33.0 10.6 31 221-251 66-96 (188)
195 KOG4643 Uncharacterized coiled 78.6 1.5E+02 0.0032 35.1 18.5 12 290-301 547-558 (1195)
196 KOG4572 Predicted DNA-binding 78.6 75 0.0016 36.7 15.5 56 257-312 993-1048(1424)
197 PRK07737 fliD flagellar cappin 78.5 9 0.0002 40.9 8.4 51 235-288 445-495 (501)
198 PF13514 AAA_27: AAA domain 78.4 86 0.0019 36.7 16.8 25 334-358 304-328 (1111)
199 KOG4460 Nuclear pore complex, 78.2 1.2E+02 0.0025 33.7 17.9 17 166-182 553-569 (741)
200 PF03961 DUF342: Protein of un 78.1 14 0.0003 38.6 9.5 74 225-299 335-408 (451)
201 KOG4674 Uncharacterized conser 77.9 70 0.0015 39.6 16.1 33 219-251 124-156 (1822)
202 PF14662 CCDC155: Coiled-coil 77.9 67 0.0014 30.8 18.6 43 215-257 86-128 (193)
203 PRK06664 fliD flagellar hook-a 77.9 7.4 0.00016 43.1 7.8 55 232-289 601-655 (661)
204 COG4026 Uncharacterized protei 77.9 67 0.0015 31.8 13.3 37 215-251 154-190 (290)
205 PF14197 Cep57_CLD_2: Centroso 77.7 34 0.00074 27.3 10.4 35 266-300 33-67 (69)
206 TIGR02338 gimC_beta prefoldin, 77.6 40 0.00086 28.6 10.6 32 222-253 72-103 (110)
207 PF06637 PV-1: PV-1 protein (P 77.3 1E+02 0.0022 32.7 15.1 36 263-298 353-388 (442)
208 KOG4643 Uncharacterized coiled 77.2 1.3E+02 0.0029 35.4 17.2 12 181-192 413-424 (1195)
209 TIGR00998 8a0101 efflux pump m 77.0 37 0.0008 33.2 11.7 20 181-200 78-97 (334)
210 PF06160 EzrA: Septation ring 77.0 1.2E+02 0.0025 33.0 17.0 127 174-302 192-335 (560)
211 KOG0163 Myosin class VI heavy 76.8 78 0.0017 36.4 14.9 10 194-203 904-913 (1259)
212 KOG4360 Uncharacterized coiled 76.7 95 0.0021 34.0 15.1 70 216-285 232-301 (596)
213 TIGR01005 eps_transp_fam exopo 76.6 94 0.002 34.5 15.9 34 327-360 420-459 (754)
214 PF04899 MbeD_MobD: MbeD/MobD 76.6 35 0.00077 27.5 9.3 36 266-301 28-63 (70)
215 cd00632 Prefoldin_beta Prefold 76.4 45 0.00097 28.0 10.7 33 222-254 68-100 (105)
216 PF10174 Cast: RIM-binding pro 76.1 1.5E+02 0.0033 33.9 18.0 11 228-238 340-350 (775)
217 PF01920 Prefoldin_2: Prefoldi 76.1 29 0.00062 28.3 9.1 35 220-254 65-99 (106)
218 PF03962 Mnd1: Mnd1 family; I 76.0 48 0.001 31.1 11.6 25 226-250 105-129 (188)
219 KOG2129 Uncharacterized conser 75.9 30 0.00065 36.8 11.0 88 179-271 249-336 (552)
220 PF15070 GOLGA2L5: Putative go 75.8 1.1E+02 0.0023 34.1 15.8 15 282-296 225-239 (617)
221 TIGR00634 recN DNA repair prot 75.7 1.2E+02 0.0026 32.7 16.3 77 232-313 323-402 (563)
222 PRK11578 macrolide transporter 75.3 55 0.0012 32.9 12.7 22 279-300 157-178 (370)
223 PF07303 Occludin_ELL: Occludi 75.3 21 0.00046 30.4 8.2 72 225-301 23-94 (101)
224 KOG0971 Microtubule-associated 74.8 1.8E+02 0.0039 34.2 18.0 18 50-67 103-120 (1243)
225 KOG1029 Endocytic adaptor prot 74.8 1.1E+02 0.0024 35.2 15.5 12 101-112 124-135 (1118)
226 KOG0972 Huntingtin interacting 74.7 84 0.0018 32.3 13.4 43 215-257 257-299 (384)
227 COG3879 Uncharacterized protei 74.7 49 0.0011 32.8 11.6 59 311-371 169-235 (247)
228 PF12777 MT: Microtubule-bindi 74.6 12 0.00027 37.8 7.8 21 341-363 310-332 (344)
229 PRK10361 DNA recombination pro 74.3 1.3E+02 0.0029 32.4 18.3 29 222-250 90-118 (475)
230 PF05911 DUF869: Plant protein 74.2 1.4E+02 0.0029 34.2 16.4 17 178-194 26-42 (769)
231 PF08826 DMPK_coil: DMPK coile 74.0 22 0.00048 28.0 7.4 41 216-256 17-57 (61)
232 PRK08724 fliD flagellar cappin 73.6 17 0.00037 40.6 9.1 52 234-288 620-671 (673)
233 COG4477 EzrA Negative regulato 73.4 1E+02 0.0022 33.8 14.5 105 242-355 379-490 (570)
234 PF09738 DUF2051: Double stran 73.0 94 0.002 31.5 13.5 36 213-248 101-136 (302)
235 PF10234 Cluap1: Clusterin-ass 73.0 1.1E+02 0.0023 30.7 14.6 28 222-249 174-201 (267)
236 TIGR01005 eps_transp_fam exopo 73.0 1.6E+02 0.0034 32.7 22.8 29 272-300 375-403 (754)
237 PF07106 TBPIP: Tat binding pr 72.8 73 0.0016 28.8 12.6 30 222-251 77-106 (169)
238 KOG0993 Rab5 GTPase effector R 72.8 72 0.0016 34.1 12.8 47 212-258 136-182 (542)
239 PF12761 End3: Actin cytoskele 72.7 71 0.0015 30.6 11.8 22 275-296 162-183 (195)
240 PF07061 Swi5: Swi5; InterPro 72.7 15 0.00033 30.3 6.6 11 263-273 43-53 (83)
241 PF10224 DUF2205: Predicted co 72.6 30 0.00066 28.6 8.2 42 226-268 18-59 (80)
242 KOG0994 Extracellular matrix g 72.6 2.3E+02 0.0049 34.3 17.6 15 146-160 1521-1535(1758)
243 COG3206 GumC Uncharacterized p 72.5 1.1E+02 0.0025 31.8 14.6 20 177-196 286-305 (458)
244 TIGR02449 conserved hypothetic 72.3 36 0.00077 27.2 8.3 31 221-251 4-34 (65)
245 PF10481 CENP-F_N: Cenp-F N-te 72.2 71 0.0015 32.4 12.1 29 272-300 87-115 (307)
246 PF14197 Cep57_CLD_2: Centroso 72.1 49 0.0011 26.4 10.0 24 266-289 40-63 (69)
247 PF09744 Jnk-SapK_ap_N: JNK_SA 72.0 82 0.0018 29.0 13.7 54 221-274 86-139 (158)
248 PF09787 Golgin_A5: Golgin sub 72.0 1.5E+02 0.0032 31.9 16.5 18 179-196 224-241 (511)
249 PF10211 Ax_dynein_light: Axon 72.0 88 0.0019 29.3 17.5 55 220-274 123-178 (189)
250 KOG4302 Microtubule-associated 71.6 34 0.00073 38.2 10.7 42 222-263 101-142 (660)
251 KOG4001 Axonemal dynein light 71.4 94 0.002 30.4 12.3 33 222-254 183-215 (259)
252 PF09728 Taxilin: Myosin-like 71.3 1.2E+02 0.0026 30.6 16.0 24 278-301 140-163 (309)
253 cd07666 BAR_SNX7 The Bin/Amphi 71.2 1.1E+02 0.0024 30.1 17.6 58 145-202 87-151 (243)
254 COG1730 GIM5 Predicted prefold 71.2 83 0.0018 28.7 12.1 29 175-203 19-47 (145)
255 PRK09343 prefoldin subunit bet 70.9 69 0.0015 27.9 10.6 31 222-252 76-106 (121)
256 KOG3758 Uncharacterized conser 70.9 1.3E+02 0.0029 33.5 14.8 133 153-302 16-152 (655)
257 PF05557 MAD: Mitotic checkpoi 70.9 6.7 0.00015 43.4 5.4 124 175-298 398-535 (722)
258 KOG0976 Rho/Rac1-interacting s 70.8 1.8E+02 0.0039 33.8 16.0 48 149-197 228-280 (1265)
259 PF05911 DUF869: Plant protein 70.8 73 0.0016 36.3 13.3 23 337-360 734-756 (769)
260 PF14257 DUF4349: Domain of un 70.8 29 0.00063 33.4 9.1 48 152-200 107-156 (262)
261 PF05529 Bap31: B-cell recepto 70.8 30 0.00064 31.9 8.8 34 224-257 154-187 (192)
262 PF10037 MRP-S27: Mitochondria 70.2 1.5E+02 0.0033 31.4 15.2 31 243-273 370-400 (429)
263 KOG0240 Kinesin (SMY1 subfamil 69.9 1.8E+02 0.004 32.2 18.5 62 223-284 413-481 (607)
264 PF15188 CCDC-167: Coiled-coil 69.8 18 0.00038 30.3 6.3 24 280-303 43-66 (85)
265 PRK03947 prefoldin subunit alp 69.7 76 0.0016 27.7 12.8 21 183-203 6-26 (140)
266 TIGR03017 EpsF chain length de 69.4 1.4E+02 0.003 30.6 14.6 32 174-205 169-200 (444)
267 PRK13182 racA polar chromosome 69.4 46 0.001 31.0 9.8 68 231-307 85-152 (175)
268 KOG3119 Basic region leucine z 69.2 28 0.00061 34.3 8.8 56 215-270 206-261 (269)
269 PF10805 DUF2730: Protein of u 69.0 51 0.0011 28.1 9.2 33 267-299 66-98 (106)
270 COG1842 PspA Phage shock prote 68.6 1.2E+02 0.0026 29.5 17.3 38 151-190 3-45 (225)
271 PF06248 Zw10: Centromere/kine 68.3 1.3E+02 0.0027 32.7 14.2 33 171-203 9-46 (593)
272 PF05529 Bap31: B-cell recepto 68.3 41 0.00089 31.0 9.2 23 269-291 164-186 (192)
273 PLN02678 seryl-tRNA synthetase 68.3 59 0.0013 34.6 11.4 74 215-292 31-104 (448)
274 TIGR00570 cdk7 CDK-activating 68.2 1.5E+02 0.0032 30.4 17.3 13 315-327 246-258 (309)
275 PRK10929 putative mechanosensi 68.1 2.6E+02 0.0057 33.3 17.5 18 332-349 260-277 (1109)
276 KOG0982 Centrosomal protein Nu 68.1 1.8E+02 0.0039 31.3 15.4 13 292-304 408-420 (502)
277 KOG4403 Cell surface glycoprot 68.0 1.8E+02 0.0039 31.4 14.8 45 272-316 346-391 (575)
278 PF14817 HAUS5: HAUS augmin-li 67.5 1.4E+02 0.003 33.3 14.4 46 228-273 83-128 (632)
279 KOG0978 E3 ubiquitin ligase in 67.4 2.2E+02 0.0049 32.2 17.7 39 266-304 587-625 (698)
280 PF12777 MT: Microtubule-bindi 67.1 97 0.0021 31.4 12.3 25 277-301 79-103 (344)
281 PF07352 Phage_Mu_Gam: Bacteri 67.0 85 0.0019 28.0 10.7 28 291-327 58-85 (149)
282 PRK13729 conjugal transfer pil 66.8 20 0.00042 38.5 7.5 12 366-377 213-224 (475)
283 KOG3800 Predicted E3 ubiquitin 66.7 35 0.00076 34.6 8.8 15 164-178 22-36 (300)
284 PF02388 FemAB: FemAB family; 66.7 19 0.00041 37.3 7.3 67 273-341 273-345 (406)
285 PRK06800 fliH flagellar assemb 66.7 88 0.0019 30.1 11.0 19 256-274 95-113 (228)
286 KOG0243 Kinesin-like protein [ 66.6 2.6E+02 0.0057 33.1 16.7 19 175-193 403-421 (1041)
287 cd00890 Prefoldin Prefoldin is 66.5 78 0.0017 26.6 10.1 32 222-253 92-123 (129)
288 KOG2077 JNK/SAPK-associated pr 66.5 2.2E+02 0.0048 31.8 18.8 108 174-283 294-423 (832)
289 PF15372 DUF4600: Domain of un 66.2 1E+02 0.0022 27.8 12.3 40 226-268 53-92 (129)
290 PF05276 SH3BP5: SH3 domain-bi 66.1 1.4E+02 0.003 29.4 14.2 38 263-300 181-218 (239)
291 TIGR02473 flagell_FliJ flagell 65.9 84 0.0018 26.8 15.1 89 179-270 30-121 (141)
292 KOG1937 Uncharacterized conser 65.6 2E+02 0.0044 31.1 16.7 68 230-297 344-427 (521)
293 cd07593 BAR_MUG137_fungi The B 65.5 1.3E+02 0.0029 28.9 12.5 16 285-300 187-202 (215)
294 PF04012 PspA_IM30: PspA/IM30 65.3 1.2E+02 0.0026 28.3 14.0 97 165-263 21-137 (221)
295 PF13514 AAA_27: AAA domain 65.3 2.8E+02 0.0061 32.6 18.0 27 178-204 745-771 (1111)
296 PRK05431 seryl-tRNA synthetase 65.2 56 0.0012 34.3 10.5 72 216-291 27-98 (425)
297 KOG4796 RNA polymerase II elon 65.2 16 0.00035 39.8 6.5 55 227-282 518-573 (604)
298 PF07111 HCR: Alpha helical co 65.1 2.5E+02 0.0054 31.9 17.7 36 265-300 241-276 (739)
299 PLN02372 violaxanthin de-epoxi 65.0 93 0.002 33.2 11.8 23 249-271 407-429 (455)
300 PF07926 TPR_MLP1_2: TPR/MLP1/ 64.8 97 0.0021 27.1 16.4 71 218-291 60-130 (132)
301 PF15397 DUF4618: Domain of un 64.6 1.6E+02 0.0034 29.4 16.7 37 221-257 71-107 (258)
302 KOG4302 Microtubule-associated 64.3 2.3E+02 0.005 31.9 15.3 25 224-248 117-141 (660)
303 COG0419 SbcC ATPase involved i 64.1 2.7E+02 0.0058 31.9 18.1 29 172-200 167-195 (908)
304 PF02050 FliJ: Flagellar FliJ 64.0 75 0.0016 25.5 14.3 86 178-267 14-102 (123)
305 KOG1103 Predicted coiled-coil 63.8 1.4E+02 0.003 31.5 12.6 36 226-261 240-275 (561)
306 KOG2391 Vacuolar sorting prote 63.5 72 0.0016 33.1 10.5 18 126-143 185-202 (365)
307 KOG4603 TBP-1 interacting prot 63.4 1.4E+02 0.003 28.5 11.8 31 221-251 83-113 (201)
308 TIGR02977 phageshock_pspA phag 63.2 1.4E+02 0.003 28.3 16.3 24 173-196 28-51 (219)
309 KOG1103 Predicted coiled-coil 62.9 94 0.002 32.7 11.2 28 145-172 57-85 (561)
310 PF03980 Nnf1: Nnf1 ; InterPr 62.9 92 0.002 26.2 10.9 77 176-252 14-108 (109)
311 PF03148 Tektin: Tektin family 62.8 1.9E+02 0.0042 29.9 16.5 28 274-301 325-352 (384)
312 COG4477 EzrA Negative regulato 62.8 2.5E+02 0.0053 31.0 15.8 22 176-197 285-306 (570)
313 TIGR01730 RND_mfp RND family e 62.6 52 0.0011 31.5 9.1 18 283-300 112-129 (322)
314 COG1340 Uncharacterized archae 62.6 1.8E+02 0.004 29.5 19.4 19 224-242 131-149 (294)
315 cd07674 F-BAR_FCHO1 The F-BAR 62.5 1.6E+02 0.0034 28.7 17.1 18 320-337 244-261 (261)
316 KOG3091 Nuclear pore complex, 62.5 1E+02 0.0022 33.5 11.7 15 99-113 182-196 (508)
317 PF12761 End3: Actin cytoskele 62.4 71 0.0015 30.6 9.6 81 220-300 99-194 (195)
318 PF14712 Snapin_Pallidin: Snap 62.4 82 0.0018 25.5 13.2 77 223-300 13-91 (92)
319 KOG1003 Actin filament-coating 62.4 1.5E+02 0.0033 28.6 16.9 65 237-301 108-172 (205)
320 KOG4787 Uncharacterized conser 62.3 74 0.0016 35.4 10.8 74 179-252 462-543 (852)
321 PRK15422 septal ring assembly 62.3 91 0.002 25.9 10.9 16 272-287 59-74 (79)
322 PF15294 Leu_zip: Leucine zipp 62.3 1.8E+02 0.0039 29.3 13.5 78 215-292 130-227 (278)
323 KOG4571 Activating transcripti 61.9 32 0.00069 34.8 7.5 42 223-264 247-288 (294)
324 KOG4460 Nuclear pore complex, 61.6 2.7E+02 0.0058 31.1 15.8 29 270-298 659-687 (741)
325 KOG0288 WD40 repeat protein Ti 61.6 2.1E+02 0.0045 30.7 13.5 15 343-357 206-220 (459)
326 PF10779 XhlA: Haemolysin XhlA 61.5 79 0.0017 24.9 8.7 47 215-261 4-50 (71)
327 PF02841 GBP_C: Guanylate-bind 61.5 1.7E+02 0.0037 28.9 13.9 31 171-201 150-184 (297)
328 KOG1899 LAR transmembrane tyro 61.5 1.5E+02 0.0033 33.3 13.0 19 154-172 86-105 (861)
329 PRK10636 putative ABC transpor 61.2 59 0.0013 35.6 10.1 22 231-252 563-584 (638)
330 PF14817 HAUS5: HAUS augmin-li 61.2 1.3E+02 0.0027 33.7 12.6 40 218-257 80-119 (632)
331 PF02994 Transposase_22: L1 tr 61.2 27 0.00057 36.0 7.1 12 320-331 190-201 (370)
332 cd00584 Prefoldin_alpha Prefol 61.0 1.1E+02 0.0023 26.3 10.6 83 175-257 12-127 (129)
333 PF09798 LCD1: DNA damage chec 60.7 50 0.0011 36.9 9.5 60 229-294 2-61 (654)
334 PRK10636 putative ABC transpor 60.7 56 0.0012 35.7 9.9 20 228-247 567-586 (638)
335 PF09763 Sec3_C: Exocyst compl 60.7 1.8E+02 0.004 32.2 13.9 111 174-304 3-113 (701)
336 KOG2196 Nuclear porin [Nuclear 60.6 1.8E+02 0.004 28.9 15.1 37 217-253 120-156 (254)
337 PF13166 AAA_13: AAA domain 60.6 2.6E+02 0.0056 30.6 18.0 25 326-355 494-518 (712)
338 KOG0978 E3 ubiquitin ligase in 60.3 3E+02 0.0065 31.2 17.7 57 246-302 560-616 (698)
339 PF07195 FliD_C: Flagellar hoo 60.1 32 0.0007 32.8 7.1 46 229-277 191-236 (239)
340 TIGR03017 EpsF chain length de 60.1 2.1E+02 0.0045 29.3 21.8 24 274-297 343-366 (444)
341 PRK10929 putative mechanosensi 60.1 3.7E+02 0.0079 32.2 17.6 43 267-309 280-322 (1109)
342 COG3074 Uncharacterized protei 60.0 96 0.0021 25.4 10.5 34 234-268 35-68 (79)
343 PF02403 Seryl_tRNA_N: Seryl-t 59.6 99 0.0021 25.7 9.2 16 181-196 34-49 (108)
344 smart00787 Spc7 Spc7 kinetocho 59.4 2.1E+02 0.0045 29.1 18.1 29 266-294 232-260 (312)
345 COG1340 Uncharacterized archae 59.4 2.1E+02 0.0045 29.1 16.8 71 224-294 172-242 (294)
346 PF09403 FadA: Adhesion protei 59.4 1.3E+02 0.0028 26.8 11.7 11 230-240 58-68 (126)
347 PF02996 Prefoldin: Prefoldin 59.4 61 0.0013 27.1 7.9 26 178-203 5-30 (120)
348 PF10174 Cast: RIM-binding pro 59.2 3.3E+02 0.0071 31.3 18.4 31 231-261 287-317 (775)
349 PRK00888 ftsB cell division pr 59.0 34 0.00073 29.3 6.3 31 221-251 31-61 (105)
350 PRK10246 exonuclease subunit S 58.8 3.6E+02 0.0078 31.7 16.4 26 175-200 183-208 (1047)
351 KOG0018 Structural maintenance 58.7 3.8E+02 0.0083 32.0 16.9 55 235-289 420-474 (1141)
352 KOG4005 Transcription factor X 58.7 1E+02 0.0022 30.7 10.2 18 183-200 59-76 (292)
353 TIGR00414 serS seryl-tRNA synt 58.3 1E+02 0.0022 32.2 11.0 36 216-251 29-64 (418)
354 PF14257 DUF4349: Domain of un 58.2 1.8E+02 0.0039 28.0 13.2 38 278-316 167-204 (262)
355 PRK03947 prefoldin subunit alp 58.1 1.3E+02 0.0028 26.3 13.5 31 269-299 104-134 (140)
356 PF09403 FadA: Adhesion protei 58.1 99 0.0021 27.6 9.2 63 235-298 56-118 (126)
357 PF11180 DUF2968: Protein of u 58.0 1.8E+02 0.0039 27.9 15.1 59 223-281 125-183 (192)
358 TIGR03794 NHPM_micro_HlyD NHPM 57.9 2.3E+02 0.005 29.1 17.5 47 280-327 227-273 (421)
359 PF15290 Syntaphilin: Golgi-lo 57.9 2.2E+02 0.0047 29.1 12.4 87 210-296 54-140 (305)
360 PF07462 MSP1_C: Merozoite sur 57.7 77 0.0017 34.8 10.0 80 262-351 71-156 (574)
361 PF10498 IFT57: Intra-flagella 57.4 2.4E+02 0.0052 29.2 13.8 70 228-297 249-318 (359)
362 PF10267 Tmemb_cc2: Predicted 56.7 2.6E+02 0.0057 29.5 14.4 21 338-358 344-364 (395)
363 KOG1760 Molecular chaperone Pr 56.6 1.4E+02 0.003 26.9 9.8 74 179-252 33-116 (131)
364 PF05010 TACC: Transforming ac 56.5 1.9E+02 0.0042 27.8 16.6 37 263-299 158-194 (207)
365 PF05377 FlaC_arch: Flagella a 56.4 53 0.0011 25.5 6.3 34 221-254 4-37 (55)
366 TIGR02977 phageshock_pspA phag 56.1 1.8E+02 0.004 27.5 14.5 52 245-296 99-150 (219)
367 KOG0946 ER-Golgi vesicle-tethe 56.0 98 0.0021 35.6 10.7 70 229-298 648-717 (970)
368 PF04977 DivIC: Septum formati 55.9 41 0.00089 25.9 5.9 29 222-250 22-50 (80)
369 KOG4196 bZIP transcription fac 55.8 50 0.0011 29.9 7.0 29 222-250 79-107 (135)
370 PF08647 BRE1: BRE1 E3 ubiquit 55.7 1.2E+02 0.0026 25.3 12.8 64 183-252 3-66 (96)
371 KOG4809 Rab6 GTPase-interactin 55.6 2.8E+02 0.0062 30.8 13.7 24 229-252 329-352 (654)
372 KOG0962 DNA repair protein RAD 55.6 4.6E+02 0.01 31.9 16.9 14 300-313 941-954 (1294)
373 PF01496 V_ATPase_I: V-type AT 55.5 8.5 0.00018 42.8 2.6 25 288-312 154-178 (759)
374 KOG4593 Mitotic checkpoint pro 55.5 3.6E+02 0.0078 30.7 15.6 36 281-316 553-595 (716)
375 KOG3564 GTPase-activating prot 55.1 1.1E+02 0.0023 33.4 10.4 64 172-241 17-80 (604)
376 PRK11578 macrolide transporter 55.1 1.4E+02 0.0031 30.0 11.1 26 274-299 159-184 (370)
377 KOG3478 Prefoldin subunit 6, K 55.1 1.5E+02 0.0033 26.3 11.1 28 178-205 7-34 (120)
378 PF14723 SSFA2_C: Sperm-specif 55.1 1.8E+02 0.0039 27.6 10.7 19 185-203 107-125 (179)
379 PRK11281 hypothetical protein; 54.8 85 0.0018 37.2 10.5 25 269-293 138-162 (1113)
380 PF02388 FemAB: FemAB family; 54.5 71 0.0015 33.1 9.0 15 189-203 214-228 (406)
381 PF15188 CCDC-167: Coiled-coil 54.2 38 0.00082 28.4 5.6 60 182-245 4-64 (85)
382 PF13863 DUF4200: Domain of un 53.5 1.4E+02 0.003 25.3 13.6 93 213-305 21-113 (126)
383 KOG4677 Golgi integral membran 53.5 2.1E+02 0.0046 31.0 12.2 45 266-310 348-392 (554)
384 PF07716 bZIP_2: Basic region 53.3 53 0.0012 24.4 5.8 30 223-252 24-53 (54)
385 PRK09343 prefoldin subunit bet 53.1 1.5E+02 0.0033 25.7 10.7 22 277-298 89-110 (121)
386 PF05130 FlgN: FlgN protein; 53.0 1.3E+02 0.0029 24.9 11.4 61 187-249 9-69 (143)
387 PLN02320 seryl-tRNA synthetase 53.0 1.2E+02 0.0026 33.0 10.5 33 217-249 93-125 (502)
388 KOG2196 Nuclear porin [Nuclear 52.4 2.5E+02 0.0055 28.0 14.0 29 275-303 221-249 (254)
389 KOG0946 ER-Golgi vesicle-tethe 52.1 2.6E+02 0.0057 32.4 13.2 55 222-276 662-716 (970)
390 PRK05771 V-type ATP synthase s 51.8 77 0.0017 34.7 9.2 35 223-257 92-126 (646)
391 COG4717 Uncharacterized conser 51.8 2.1E+02 0.0045 33.4 12.4 97 225-321 775-879 (984)
392 PF07889 DUF1664: Protein of u 51.7 1.8E+02 0.0039 26.0 11.8 41 260-300 83-123 (126)
393 COG4717 Uncharacterized conser 51.5 4.6E+02 0.01 30.7 15.4 39 317-356 810-848 (984)
394 PF06120 Phage_HK97_TLTM: Tail 51.4 2.8E+02 0.0061 28.2 12.9 28 174-201 86-113 (301)
395 COG0172 SerS Seryl-tRNA synthe 51.4 1.8E+02 0.0039 31.0 11.4 93 215-315 27-119 (429)
396 PRK10869 recombination and rep 51.4 3.5E+02 0.0077 29.4 18.1 18 296-313 380-397 (553)
397 PRK12765 flagellar capping pro 51.1 79 0.0017 34.8 9.1 55 234-291 535-589 (595)
398 PRK05689 fliJ flagellar biosyn 51.1 1.7E+02 0.0037 25.6 15.4 54 220-273 74-127 (147)
399 PF09731 Mitofilin: Mitochondr 51.0 3.5E+02 0.0075 29.1 19.0 11 149-159 225-235 (582)
400 KOG0018 Structural maintenance 50.9 4.6E+02 0.01 31.3 15.1 35 167-202 724-763 (1141)
401 KOG0962 DNA repair protein RAD 50.8 5E+02 0.011 31.7 15.7 24 295-318 946-969 (1294)
402 PF05557 MAD: Mitotic checkpoi 50.7 5.1 0.00011 44.3 0.0 100 181-290 310-423 (722)
403 PF10458 Val_tRNA-synt_C: Valy 50.7 62 0.0013 25.1 6.1 18 225-242 5-22 (66)
404 PRK06800 fliH flagellar assemb 50.5 1.8E+02 0.004 28.1 10.1 39 215-253 36-74 (228)
405 PF08647 BRE1: BRE1 E3 ubiquit 50.4 1.5E+02 0.0032 24.8 11.6 36 222-257 29-64 (96)
406 PRK10698 phage shock protein P 50.3 2.4E+02 0.0052 27.1 18.7 47 249-295 103-149 (222)
407 KOG0796 Spliceosome subunit [R 50.3 3.1E+02 0.0066 28.3 12.8 32 172-203 56-89 (319)
408 smart00338 BRLZ basic region l 49.8 72 0.0016 24.3 6.3 27 228-254 30-56 (65)
409 PRK10869 recombination and rep 49.7 3.8E+02 0.0081 29.2 14.6 8 149-156 114-121 (553)
410 KOG3595 Dyneins, heavy chain [ 49.4 5.7E+02 0.012 31.2 16.5 53 152-204 676-728 (1395)
411 PF12999 PRKCSH-like: Glucosid 49.3 62 0.0013 30.5 6.8 14 163-176 97-110 (176)
412 PF05837 CENP-H: Centromere pr 48.7 1.7E+02 0.0037 24.9 10.4 39 221-259 7-45 (106)
413 KOG0249 LAR-interacting protei 48.0 4.9E+02 0.011 30.0 14.3 37 222-258 221-257 (916)
414 PRK03598 putative efflux pump 47.9 2.9E+02 0.0062 27.3 12.3 89 210-300 74-172 (331)
415 PRK15335 type III secretion sy 47.9 1.9E+02 0.0041 26.4 9.3 22 233-254 68-89 (147)
416 PF11488 Lge1: Transcriptional 47.9 1.5E+02 0.0032 24.0 8.5 27 271-299 51-77 (80)
417 PRK10698 phage shock protein P 47.8 2.6E+02 0.0057 26.8 14.5 23 173-195 28-50 (222)
418 PF13815 Dzip-like_N: Iguana/D 47.6 68 0.0015 27.6 6.5 29 223-251 86-114 (118)
419 PF15369 KIAA1328: Uncharacter 47.6 2.9E+02 0.0064 28.5 11.8 105 213-317 11-119 (328)
420 PF14362 DUF4407: Domain of un 47.6 2.6E+02 0.0057 27.4 11.4 22 269-290 192-213 (301)
421 PF05615 THOC7: Tho complex su 47.5 1.9E+02 0.0042 25.2 11.3 69 178-252 41-109 (139)
422 PF04977 DivIC: Septum formati 47.3 47 0.001 25.6 5.0 31 227-257 20-50 (80)
423 PF11365 DUF3166: Protein of u 47.2 1.8E+02 0.004 24.9 8.8 89 212-303 3-92 (96)
424 PF09731 Mitofilin: Mitochondr 47.1 4E+02 0.0086 28.7 17.3 14 335-348 475-488 (582)
425 TIGR02971 heterocyst_DevB ABC 47.0 2.9E+02 0.0062 27.1 14.5 21 277-297 183-203 (327)
426 KOG4005 Transcription factor X 46.9 3.1E+02 0.0068 27.5 12.4 50 233-282 92-141 (292)
427 PLN02678 seryl-tRNA synthetase 46.9 1.6E+02 0.0035 31.4 10.3 29 223-251 77-105 (448)
428 PF09738 DUF2051: Double stran 46.8 3.3E+02 0.0071 27.7 12.5 65 233-297 100-164 (302)
429 PF03245 Phage_lysis: Bacterio 46.6 1.7E+02 0.0037 25.7 8.9 35 245-279 21-55 (125)
430 KOG1853 LIS1-interacting prote 46.5 3.3E+02 0.0071 27.6 17.1 8 318-325 221-228 (333)
431 PRK10476 multidrug resistance 46.4 3.1E+02 0.0067 27.3 14.1 22 181-202 84-105 (346)
432 cd07596 BAR_SNX The Bin/Amphip 46.0 2.2E+02 0.0048 25.5 19.6 14 286-299 199-212 (218)
433 PF08286 Spc24: Spc24 subunit 46.0 7.2 0.00016 33.6 0.2 37 223-259 5-41 (118)
434 TIGR03545 conserved hypothetic 45.9 3.4E+02 0.0074 29.8 12.8 12 192-203 193-204 (555)
435 smart00502 BBC B-Box C-termina 45.8 1.6E+02 0.0036 23.9 14.9 24 180-203 4-27 (127)
436 PF13166 AAA_13: AAA domain 45.8 4.4E+02 0.0095 28.8 19.5 6 294-299 466-471 (712)
437 COG5220 TFB3 Cdk activating ki 45.2 1.6E+02 0.0035 29.5 9.2 20 185-204 73-94 (314)
438 KOG3091 Nuclear pore complex, 45.1 1.1E+02 0.0025 33.1 8.8 24 175-202 337-360 (508)
439 COG4467 Regulator of replicati 45.0 38 0.00083 29.7 4.4 86 227-318 4-95 (114)
440 PRK05431 seryl-tRNA synthetase 45.0 1.8E+02 0.0039 30.6 10.2 71 175-250 28-99 (425)
441 KOG2264 Exostosin EXT1L [Signa 44.9 1.3E+02 0.0028 33.6 9.2 41 218-258 94-134 (907)
442 PF07058 Myosin_HC-like: Myosi 44.9 3E+02 0.0065 28.5 11.2 11 320-330 197-207 (351)
443 PF11365 DUF3166: Protein of u 44.8 1E+02 0.0023 26.4 6.9 20 181-200 6-25 (96)
444 KOG4572 Predicted DNA-binding 44.7 4.2E+02 0.009 31.1 13.2 36 220-255 998-1033(1424)
445 PF14988 DUF4515: Domain of un 44.6 2.9E+02 0.0062 26.4 16.0 25 170-194 16-40 (206)
446 PF06008 Laminin_I: Laminin Do 44.6 3E+02 0.0065 26.6 15.6 28 262-289 181-208 (264)
447 PF06632 XRCC4: DNA double-str 44.6 3.8E+02 0.0082 27.7 13.5 25 263-287 184-208 (342)
448 PF06419 COG6: Conserved oligo 44.5 2.2E+02 0.0047 31.4 11.2 88 215-309 36-127 (618)
449 TIGR00999 8a0102 Membrane Fusi 44.4 1.4E+02 0.0031 27.8 8.7 23 279-301 60-82 (265)
450 PRK10722 hypothetical protein; 44.4 88 0.0019 31.0 7.3 33 230-262 175-207 (247)
451 PF05008 V-SNARE: Vesicle tran 44.1 1.5E+02 0.0033 23.1 8.0 29 230-258 24-52 (79)
452 COG4985 ABC-type phosphate tra 44.0 2.1E+02 0.0046 28.6 9.8 14 175-188 160-173 (289)
453 TIGR02971 heterocyst_DevB ABC 43.8 2E+02 0.0044 28.1 9.9 23 279-301 134-156 (327)
454 PF01486 K-box: K-box region; 43.8 1.9E+02 0.0041 24.0 10.8 29 178-206 14-42 (100)
455 KOG2077 JNK/SAPK-associated pr 43.7 2.1E+02 0.0046 32.0 10.6 46 213-258 325-370 (832)
456 TIGR03495 phage_LysB phage lys 43.4 2.5E+02 0.0055 25.4 11.3 37 278-317 66-102 (135)
457 PF05700 BCAS2: Breast carcino 43.3 3E+02 0.0065 26.2 12.8 74 222-299 141-215 (221)
458 TIGR00570 cdk7 CDK-activating 43.3 3.8E+02 0.0083 27.5 15.5 23 145-168 68-90 (309)
459 KOG0249 LAR-interacting protei 43.1 5.8E+02 0.013 29.5 14.5 33 268-300 225-257 (916)
460 PF09321 DUF1978: Domain of un 42.9 3.5E+02 0.0076 26.9 15.1 65 244-309 153-227 (241)
461 KOG3647 Predicted coiled-coil 42.7 2.8E+02 0.0062 28.2 10.6 39 263-301 165-203 (338)
462 PF12126 DUF3583: Protein of u 42.7 4E+02 0.0086 27.4 12.7 36 222-257 51-87 (324)
463 KOG4438 Centromere-associated 42.6 4.6E+02 0.01 28.2 13.8 65 238-302 173-238 (446)
464 PF05622 HOOK: HOOK protein; 42.4 8.3 0.00018 42.7 0.0 7 294-300 412-418 (713)
465 TIGR03545 conserved hypothetic 42.3 4.7E+02 0.01 28.8 13.1 18 176-193 164-181 (555)
466 COG3334 Uncharacterized conser 42.2 2.1E+02 0.0046 27.4 9.3 35 226-260 72-106 (192)
467 PF11559 ADIP: Afadin- and alp 42.0 2.4E+02 0.0053 24.8 18.3 11 149-159 34-44 (151)
468 PLN03086 PRLI-interacting fact 42.0 3.3E+02 0.0071 30.2 11.9 29 294-322 99-133 (567)
469 PF07200 Mod_r: Modifier of ru 42.0 2.4E+02 0.0052 24.7 13.9 103 183-297 7-109 (150)
470 PF07407 Seadorna_VP6: Seadorn 41.9 1.6E+02 0.0034 30.8 8.8 79 216-294 31-114 (420)
471 PF02090 SPAM: Salmonella surf 41.7 2.9E+02 0.0062 25.5 10.9 83 219-301 25-108 (147)
472 KOG4657 Uncharacterized conser 41.6 3.6E+02 0.0079 26.7 17.4 122 175-298 11-132 (246)
473 PF13874 Nup54: Nucleoporin co 41.6 2.3E+02 0.0049 25.2 9.0 91 179-275 33-123 (141)
474 PRK10361 DNA recombination pro 41.4 5E+02 0.011 28.2 17.8 112 180-301 33-154 (475)
475 PF03915 AIP3: Actin interacti 41.4 4.7E+02 0.01 27.9 16.8 150 174-324 204-353 (424)
476 PF05461 ApoL: Apolipoprotein 41.2 3.4E+02 0.0073 27.6 11.2 89 183-294 5-93 (313)
477 PF07851 TMPIT: TMPIT-like pro 41.2 3.4E+02 0.0073 28.1 11.2 75 228-302 1-83 (330)
478 PF07851 TMPIT: TMPIT-like pro 41.2 3.6E+02 0.0078 27.9 11.4 83 172-261 1-88 (330)
479 KOG3850 Predicted membrane pro 41.2 4.7E+02 0.01 27.9 13.8 86 213-298 263-349 (455)
480 PF11068 YlqD: YlqD protein; 40.9 2.7E+02 0.0058 24.9 11.1 65 223-287 19-88 (131)
481 PF06156 DUF972: Protein of un 40.6 2E+02 0.0044 24.8 8.2 51 210-260 1-51 (107)
482 PF13600 DUF4140: N-terminal d 40.6 64 0.0014 26.7 5.1 35 224-258 70-104 (104)
483 PF01920 Prefoldin_2: Prefoldi 40.3 2E+02 0.0043 23.3 10.7 82 220-301 1-97 (106)
484 TIGR01730 RND_mfp RND family e 39.8 1.8E+02 0.0039 27.8 8.7 78 210-291 57-134 (322)
485 PHA03161 hypothetical protein; 39.7 1.1E+02 0.0024 28.2 6.8 87 230-332 53-146 (150)
486 PF11221 Med21: Subunit 21 of 39.6 2.2E+02 0.0047 25.4 8.6 67 178-250 71-137 (144)
487 COG1566 EmrA Multidrug resista 39.6 3.5E+02 0.0075 28.1 11.1 86 210-298 84-169 (352)
488 PF01576 Myosin_tail_1: Myosin 39.6 9.7 0.00021 43.3 0.0 120 178-297 133-253 (859)
489 PF11471 Sugarporin_N: Maltopo 39.5 53 0.0011 25.6 4.1 31 229-259 30-60 (60)
490 PF15369 KIAA1328: Uncharacter 39.5 4.5E+02 0.0098 27.2 12.5 79 217-299 5-84 (328)
491 PF12795 MscS_porin: Mechanose 39.3 3.5E+02 0.0075 25.8 12.6 88 214-301 28-127 (240)
492 PF04880 NUDE_C: NUDE protein, 39.3 53 0.0011 30.7 4.7 58 178-253 2-59 (166)
493 PRK14160 heat shock protein Gr 39.1 3.7E+02 0.008 26.0 12.1 86 216-301 39-126 (211)
494 PF13942 Lipoprotein_20: YfhG 38.9 1.7E+02 0.0036 27.8 7.9 51 214-264 113-163 (179)
495 PF04420 CHD5: CHD5-like prote 38.7 60 0.0013 29.6 5.0 60 238-299 40-99 (161)
496 PRK07720 fliJ flagellar biosyn 38.7 2.7E+02 0.0058 24.4 15.1 106 174-279 28-133 (146)
497 PRK08453 fliD flagellar cappin 38.4 92 0.002 35.0 7.2 54 229-285 619-672 (673)
498 KOG0239 Kinesin (KAR3 subfamil 38.4 6.3E+02 0.014 28.5 15.5 129 174-302 177-308 (670)
499 PF07407 Seadorna_VP6: Seadorn 38.3 1.6E+02 0.0035 30.7 8.3 63 232-306 33-95 (420)
500 PF08172 CASP_C: CASP C termin 38.1 1.5E+02 0.0032 29.2 7.9 54 215-269 84-137 (248)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-81 Score=627.73 Aligned_cols=343 Identities=53% Similarity=0.839 Sum_probs=317.3
Q ss_pred EeecccccccccccccCcCCCCCcccccccccccCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCcccceE
Q 016664 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (385)
Q Consensus 33 i~g~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~s~vvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~eSfV 111 (385)
+||+|+|+++++..|..+.-.+.++|+..++.+..+|+.+++|+|.+.+ ++.+.|++++++.. +++. ++.++.++||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999965 99999999999887 5555 8899999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016664 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (385)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lss~i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E 191 (385)
+.+...+..+....+-+....+..++...+.+++++++++++++|+|||++++||||+|.||+|.|++.|+++++.+++|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877666655555544444444445567789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (385)
Q Consensus 192 ~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~ 271 (385)
+++|++|+++|+++..+. +++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+
T Consensus 159 ~~~Y~~~l~~Le~~~~~~-~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQDV-SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999765543 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 351 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~t 351 (385)
++++.+++++++||++++++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||++|||++
T Consensus 238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~ 317 (447)
T KOG2751|consen 238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT 317 (447)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCc-cceeeeecCCcceeeccCC
Q 016664 352 MCQYFRPKFP-YRIKIIPMGSYPRIMDSNN 380 (385)
Q Consensus 352 la~kl~l~F~-YrykLvPmGS~SkI~~~~~ 380 (385)
|++|+|++|+ || ||||||||+|++.-.
T Consensus 318 l~~kig~~~~~y~--lvp~GshSyI~~~~~ 345 (447)
T KOG2751|consen 318 LANKIGLNFVRYR--LVPMGSHSYIKKRMV 345 (447)
T ss_pred HHHhcCcccceee--eecccchhHHHHhcc
Confidence 9999999998 66 999999999998644
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=1.8e-68 Score=524.57 Aligned_cols=217 Identities=45% Similarity=0.832 Sum_probs=151.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 168 PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el 247 (385)
|||.||++.|++.|+.+++++++|+++|..||++++.+.....+..++.+++.++++||++|.++|+++|++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853222223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCC
Q 016664 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (385)
Q Consensus 248 ~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGr 327 (385)
.+++.+..+++++|++||+++|.|++++.+++++++++++||+++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhhcCCCCccceeeeecCCcceeeccC----CCcccC
Q 016664 328 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYEL 385 (385)
Q Consensus 328 lp~~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~YrykLvPmGS~SkI~~~~----~~tyel 385 (385)
+|++||+|+||||||||+||||++||++++++|+ +|+||||||||+|++.. +.+|+|
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~l 221 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPL 221 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEES
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEec
Confidence 9999999999999999999999999999999998 44499999999999986 577775
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.28 E-value=1.4e-09 Score=103.66 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=117.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (385)
Q Consensus 166 DhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~--~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l 243 (385)
-..+|..|+..=+-.++..+.++..+.+....-++.+-.... .......+..+...++.....+..+++.+.++.+..
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999888765554322100 000111222233333444444445555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccCCCceeeee--------
Q 016664 244 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH-------- 313 (385)
Q Consensus 244 ~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk--L~ktNV~nd~F~I~h-------- 313 (385)
.+.+.++..........-..+.........++.+..++......++.....++.. -+...-+...|.|..
T Consensus 90 r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~ 169 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPS 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCC
Confidence 4444444433322222111222222233333333333333333333322222221 111223455888832
Q ss_pred ---cCCeeeeccccCCCCCC-CCcchhhHHHHHHHHHHHHHHHHhhcCCCCccceeeeecCCcceeec
Q 016664 314 ---DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD 377 (385)
Q Consensus 314 ---dG~fGTINglRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~YrykLvPmGS~SkI~~ 377 (385)
.+.|. |.|+.|=...+ ...+=.+|+||+|.++-|+..||.+|++.+-|+ +.|+||+|.|.+
T Consensus 170 ~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~Lpy~--i~~~gs~s~i~d 234 (302)
T PF10186_consen 170 DSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPLPYP--ITPSGSRSTIID 234 (302)
T ss_pred CCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--cccCccccchhh
Confidence 35665 99888654422 234558999999999999999999998877666 999999999877
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=99.01 E-value=5.1e-10 Score=114.22 Aligned_cols=245 Identities=11% Similarity=-0.004 Sum_probs=135.9
Q ss_pred CCCCcccceEEEecCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHH
Q 016664 102 SGKAMDESFVVIYKSESASDGGGPHIPPPEGGT-NGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDK 180 (385)
Q Consensus 102 ~~~~~~eSfV~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lss~i~~l~~lFdIlSs~s~IDhPLC~eC~d~Lle~ 180 (385)
.+..|.|+++.+... .++.++.+..+..+++. .++..++ ..++....+-...|+-.++++.+|||.|..|...+...
T Consensus 35 ~~~~~~~~~~p~~~~-~~~~~~~t~~~~a~~~~~~~~~~~~-~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (447)
T KOG2751|consen 35 DRMDISELVLPLHKP-PQSQGGPTRPRGASSGDATSGKTPQ-ESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTL 112 (447)
T ss_pred cccchhhccCCCCCC-ccccCCCccCccccCccccCCcchh-hccceecccCcccccccccccccccccccchhhhhHHH
Confidence 344566666666654 23333333322222211 1222222 33556666777889999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHH----hchhcccCCH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYE----------ACLQRL----EGEARDVLSE----ADFLKEKLK--IEEEERKLEAAIEETEKQN 240 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~----------~fL~~L----~~~~~~~~~~----e~l~~e~~~--Le~EE~~L~~eLeelEke~ 240 (385)
+-+=...+....-.|. .|.+-| ..+......+ +.+...++. -..++..+..+++++..|.
T Consensus 113 s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE 192 (447)
T KOG2751|consen 113 SATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEE 192 (447)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 4433332222222221 111111 1110000000 000000000 0012333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcee------eeec
Q 016664 241 AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHD 314 (385)
Q Consensus 241 ~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~------I~hd 314 (385)
.++-+++++++++...++.++. ++-...++..++.++|.+-|. |-|+
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~---------------------------e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~ 245 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLK---------------------------ELEFKAERLNEEEDQYWREYNNFQRQLIEHQ 245 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4444444444443333332221 112223444445555555553 5578
Q ss_pred CCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhhcCCCCccceeeeecCCcceee
Q 016664 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIM 376 (385)
Q Consensus 315 G~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~YrykLvPmGS~SkI~ 376 (385)
|...+|++.|.|+++...+-|.+++++||-.+.+.-.++.+.|+.+. ||..+|.|+.+.+.
T Consensus 246 del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG-~lp~~pVew~EINA 306 (447)
T KOG2751|consen 246 DELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLG-RLPSVPVEWDEINA 306 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceec-cccCCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999988887 56699999866443
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.27 E-value=0.00013 Score=74.05 Aligned_cols=119 Identities=24% Similarity=0.318 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecC-Ce-----------
Q 016664 250 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG-EF----------- 317 (385)
Q Consensus 250 le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG-~f----------- 317 (385)
++.-...|+....++-...-.++.++.++.+.+-++.+..+....+ ++ =++|.|..+| +.
T Consensus 136 ~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~-------~~-~~~~~irq~~~~~s~i~~l~~~~~ 207 (377)
T KOG2896|consen 136 LEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQ-------RI-QDTFKIRQDGSPLSKILPLQFSYC 207 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhH-------HH-hhhhhhhccCcchheeecCCcccc
Confidence 3333344454555555555555555555555554443333222211 11 2567777765 22
Q ss_pred ---eeeccccCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhhcCCCCccceeeeecCCcceeecc
Q 016664 318 ---GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS 378 (385)
Q Consensus 318 ---GTINglRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~kl~l~F~YrykLvPmGS~SkI~~~ 378 (385)
-||.|++|--.++..- +=.|+-||+|-++-|+++||..|.+-+.|+ |++-||.|+|.+.
T Consensus 208 ~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pLRYP--Il~~~Sks~I~D~ 270 (377)
T KOG2896|consen 208 HLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPLRYP--ILLAGSKSYIRDY 270 (377)
T ss_pred hhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--cccccccceeccc
Confidence 3566676655444221 355889999999999999999987766666 9999999999985
No 6
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.95 E-value=0.038 Score=53.80 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
.|+.+|.+++.+.-.++.|..+|++++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~ 38 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKA 38 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4566777777777777777777776654
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.83 E-value=0.082 Score=59.41 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
++.+++++...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.+
T Consensus 435 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 502 (1164)
T TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444444455556666666566665555555555554444444333
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.81 E-value=0.088 Score=60.10 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=56.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 222 IEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 222 Le~EE-~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
++++. +.+..++.+.|++...|..|.+.++.....|.++++.+-.++..-+-++...+.+...+..++++.+.+|..|+
T Consensus 384 ~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 384 LEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 44555566666666666666666666666666666666666666666666666777778888899999999998
Q ss_pred ccc
Q 016664 301 RTN 303 (385)
Q Consensus 301 ktN 303 (385)
+++
T Consensus 464 ~~k 466 (1074)
T KOG0250|consen 464 KTK 466 (1074)
T ss_pred hcc
Confidence 764
No 9
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.55 E-value=0.06 Score=53.99 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (385)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~ 268 (385)
..+.+.+..-++.++.+ ++.+.+++.+||.|..++.++|.+++.+.++++++......+...+..+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666543 456778888899999999999999999888888777776666666655555555555
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHH-hccccCCCc
Q 016664 269 NNFQFQLIAHQEERDAI---------------------------------------SSKIEVSQAHLELL-KRTNVLNDA 308 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl---------------------------------------~~q~~~~~~qLdkL-~ktNV~nd~ 308 (385)
..++.++....++++.| ++..-++---|..| ++.|+==..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 55555555555555443 22222222223333 344443345
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCcchhhHHHHHHHHHHHHHHHHhhc
Q 016664 309 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYF 356 (385)
Q Consensus 309 F~I~hdG~fGTINglRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~kl 356 (385)
|.|-.-|.|-+|--+.-+. ..+ ....+..+|.|+--.+-+|.-++..+
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV 256 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 7777777777765554111 001 12468899999988777777777654
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=96.23 E-value=0.29 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAIS 286 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~ 286 (385)
.|+..++.++.++..++.+...+.
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~ 327 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIE 327 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444433
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.16 E-value=0.39 Score=43.84 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
..+..+.+++++.++.......++..++... ....+.+...+.+...+....+.+.++..++.+++.+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444444444443221 1112333344555555566666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 256 RFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 256 ~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
.+...-++.+..++.++..+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444443
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.02 E-value=0.43 Score=53.80 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=11.2
Q ss_pred cCCCCCCCCcch-hhHHHHHHH
Q 016664 324 RLGRLPKIPVEW-DEINAAWGQ 344 (385)
Q Consensus 324 RLGrlp~~~V~W-~EINAAwGQ 344 (385)
++|.+-.++-.| .=|-+|+|.
T Consensus 526 ~l~dli~v~~~y~~Aie~~lg~ 547 (1164)
T TIGR02169 526 TVAQLGSVGERYATAIEVAAGN 547 (1164)
T ss_pred cHHHhcCcCHHHHHHHHHHhhh
Confidence 455555555445 335566664
No 13
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.99 E-value=0.45 Score=48.00 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH-----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA-----DFLK-------EKLKIEEEERKLEAAIEETEKQNAEV 243 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e-----~l~~-------e~~~Le~EE~~L~~eLeelEke~~~l 243 (385)
.-++.|++++..++.|......-..+|..++...-..+ +..+ +...|..|..+...+......|...|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998888877777764432110000 1111 12223344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016664 244 NAELKELELKSKRFKELEERYW-------QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 244 ~~el~~le~e~~~l~~eE~~~w-------~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN 303 (385)
-+++-+++.+.+.+--+-++.- ..-+.++.++.++++...-..+.+.-++.+|..||+.|
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4455444444443332222222 22344555666666666666666777999999999876
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.87 E-value=0.25 Score=51.83 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=8.7
Q ss_pred CCcchHHHHHHHHH
Q 016664 166 EQPLCLECMRVLSD 179 (385)
Q Consensus 166 DhPLC~eC~d~Lle 179 (385)
.++.|.-|...+-+
T Consensus 283 ~~~~Cp~C~~~~~~ 296 (562)
T PHA02562 283 KGGVCPTCTQQISE 296 (562)
T ss_pred CCCCCCCCCCcCCC
Confidence 36678877655533
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.77 E-value=0.18 Score=58.38 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCce---eeeecCC
Q 016664 240 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF---PIWHDGE 316 (385)
Q Consensus 240 ~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F---~I~hdG~ 316 (385)
.+.+..++..++.....+...-...|+++...+..+..+..+..++..++......... .+..-.+- .....|.
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~Gv 517 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESGLPGV 517 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhccCCCc
Confidence 33334444444444444444445566666666666666666666655555544443332 01000111 1113455
Q ss_pred eeeeccccCCCCCCCCcchhh-HHHHHH
Q 016664 317 FGTINNFRLGRLPKIPVEWDE-INAAWG 343 (385)
Q Consensus 317 fGTINglRLGrlp~~~V~W~E-INAAwG 343 (385)
||+ +|-+-.++..|.- |=+|+|
T Consensus 518 ~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 518 YGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred cch-----HHHhcCcChHHHHHHHHHcc
Confidence 654 3444445557776 777777
No 16
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.68 E-value=0.87 Score=44.50 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ-------LIAHQEERDAISS 287 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q-------l~~~~ee~~sl~~ 287 (385)
|..|+..++.....|..+|.++..+.+.+..++..+..+. ..+|..+-.....+... ...+..++..|..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~---~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL---ERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666655555432 33344444444444444 4444444444444
Q ss_pred HHH-HHHHHHHHHhccccCCCceeeeecCCeeeeccccCCC
Q 016664 288 KIE-VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (385)
Q Consensus 288 q~~-~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGr 327 (385)
.+. ......+++++.+ -+-..+.|+|=+=|.
T Consensus 171 ~l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~G 202 (239)
T COG1579 171 KLDPELLSEYERIRKNK---------KGVGVVPLEGRVCGG 202 (239)
T ss_pred hcCHHHHHHHHHHHhcC---------CCceEEeecCCcccC
Confidence 442 3334456666532 022456666655543
No 17
>PRK11637 AmiB activator; Provisional
Probab=95.65 E-value=0.27 Score=50.69 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|.+++++...++.+|..++.++..+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777666666554321 123333444444444444444444444444444444444444333
No 18
>PRK11637 AmiB activator; Provisional
Probab=95.41 E-value=0.92 Score=46.85 Aligned_cols=66 Identities=12% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 287 (385)
+....++|.....+++.+++++...+.+++.+...|+.+..+.-.....++.++...+.++..+.+
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~ 240 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRA 240 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555444444333444444443333333333333
No 19
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.41 E-value=1 Score=51.46 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG-----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (385)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~-----~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~ 244 (385)
|..|+..| ..|..+.+...++...|..+...+.. ....-+.-.+...+...+.+.-.++.+++..++++...+.
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 55555543 33666666666666665544332211 0001111122222222333334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 245 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
.-.+.|+.+..++...=.+-|.++|.......+..++..-
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~ 315 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKE 315 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555555554444444444333
No 20
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.38 E-value=1.3 Score=49.69 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=4.3
Q ss_pred eEEeecc
Q 016664 31 LCIVGVD 37 (385)
Q Consensus 31 l~i~g~d 37 (385)
.+|||+-
T Consensus 26 ~~i~G~N 32 (1179)
T TIGR02168 26 TGIVGPN 32 (1179)
T ss_pred EEEECCC
Confidence 4677764
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.74 Score=53.35 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~e 280 (385)
..+...+|..++.+...+..++.+.+++...+..++..+-...+.+...+.+...
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666666666666666666666665555444443
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.14 E-value=2.2 Score=42.82 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=19.2
Q ss_pred CccchHHHHHHHHHhhcCCCCcCCcchH
Q 016664 144 GFHSTITVLKRAFEIATSQTQVEQPLCL 171 (385)
Q Consensus 144 ~lss~i~~l~~lFdIlSs~s~IDhPLC~ 171 (385)
.|.+.|.--.++|.=+...+..+.|-..
T Consensus 79 EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 79 ELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 3566677777777777666666767654
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.80 E-value=1.7 Score=47.09 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=9.1
Q ss_pred cccCCCCcccceEEEec
Q 016664 99 ASQSGKAMDESFVVIYK 115 (385)
Q Consensus 99 ~~~~~~~~~eSfV~l~~ 115 (385)
+.-.++.-.+=|.|.|=
T Consensus 79 ayyLPk~~~e~YqfcYv 95 (546)
T PF07888_consen 79 AYYLPKDDDEFYQFCYV 95 (546)
T ss_pred cccCCCCCCCeEEEEEE
Confidence 34444444466777663
No 24
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.78 E-value=1.1 Score=52.17 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeee
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~h 313 (385)
+.-..+|..++.+...|...+.....|+++|+..||+.+.=-|.|
T Consensus 1263 ~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~ 1307 (1758)
T KOG0994|consen 1263 PLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRH 1307 (1758)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Confidence 344578889999999999999999999999999999865333433
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.75 E-value=1.9 Score=41.35 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
++.+..+.+..++.+|.....+..++..+....+.++..+.++-.....|.-++..+...+..+..+++.+.....+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555544444444444444444444445555555555555555555555554444443
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.74 E-value=1.4 Score=50.73 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAI-EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 222 Le~EE~~L~~eL-eelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
+++....+.++. +.+..++.+.+.+++.|+.+.+.++.+..+.=.+++.++..+..-++++..++..+......++
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 5555666667777777777777777777777777777777777777777777666665555444
No 27
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.72 E-value=4.3 Score=39.08 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=41.2
Q ss_pred HHHHhccccCCCceeeeecCCeeeeccccCCCCC---------------CCCcchhhHHHHHHHHHHHHHHHHhh
Q 016664 296 LELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP---------------KIPVEWDEINAAWGQACLLLHTMCQY 355 (385)
Q Consensus 296 LdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp---------------~~~V~W~EINAAwGQ~~LLL~tla~k 355 (385)
.+-=+...+|..+..| ||.=-+.+=|||||+. ...=.|..+...+...+--..-||++
T Consensus 162 ~~yg~~i~~~~~~i~~--dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia~k 234 (251)
T PF11932_consen 162 MEYGRTIEVYQGTITL--DGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIARK 234 (251)
T ss_pred HHhCCceeEEEEEEeE--CCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHHhC
Confidence 3333445556665555 8888889999999874 12336888888888888877788876
No 28
>PRK09039 hypothetical protein; Validated
Probab=94.68 E-value=2.1 Score=43.60 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEA 194 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~ 194 (385)
..++++++.++.++..
T Consensus 49 ~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 49 SGKDSALDRLNSQIAE 64 (343)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444444444444443
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.58 E-value=1.4 Score=46.35 Aligned_cols=11 Identities=0% Similarity=0.202 Sum_probs=6.0
Q ss_pred chHHHHHHHHH
Q 016664 147 STITVLKRAFE 157 (385)
Q Consensus 147 s~i~~l~~lFd 157 (385)
.+.+.+.++|+
T Consensus 151 er~~il~~l~~ 161 (562)
T PHA02562 151 ARRKLVEDLLD 161 (562)
T ss_pred hHHHHHHHHhC
Confidence 34555666665
No 30
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.50 E-value=3.7 Score=37.44 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
..++++..+.+|.+.....+..+..+- ..+.........+.+...+++..++...+.+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443211 111222222233334444444455555544444444444
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.47 E-value=1 Score=47.26 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=58.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~e 246 (385)
+|.|..| ....+++++++.+|+..-..-+....++ -..+.+++..+|.+...++.+|.+.+..+.++.+.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQ------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 4445577888777776666555544322 23466677777888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 247 LKELELKSKRFKELE 261 (385)
Q Consensus 247 l~~le~e~~~l~~eE 261 (385)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776666555
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.40 E-value=4.6 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRL 202 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (385)
||..|+.++.+..+.......-+..+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei 53 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEI 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655554444444444433
No 33
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.40 E-value=3.8 Score=41.70 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-----ccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~~-~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el 247 (385)
...-++.|.+++.+++.|++.+..-+.+.+.... ..++ .+++..++.++...-..|+..+..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999988876653221 1112 356677777777777788888888888888888888
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016664 248 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 248 ~~le~e~~~l~~eE~--------------~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN 303 (385)
...+.+..+|+.+-. ...-|-.-++-++...++|...+...+.-...-|++ ++.|
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~-k~~~ 232 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER-KRKK 232 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 877777777754321 112223334556888999999999888888888995 4444
No 34
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.27 E-value=4.5 Score=40.87 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=84.0
Q ss_pred ccchHHHHHHHHHhhcCCCCcCCcc-hHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhchhc---cc--
Q 016664 145 FHSTITVLKRAFEIATSQTQVEQPL-CLECM---RVLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---DV-- 209 (385)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~IDhPL-C~eC~---d~Lle~Ld~qle~------~~~E~d~Y~~fL~~L~~~~~---~~-- 209 (385)
|..+|.-=.++|.=+...+.++.|. =.|=+ .-.-..|+.|+.- ++....=|..=.+-+++-.. ..
T Consensus 75 L~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~ 154 (312)
T smart00787 75 LKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777778888888888877764 22222 2223334455443 34455556544333322100 00
Q ss_pred -C-CHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 210 -L-SEAD-FLK-------EKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQFQL 275 (385)
Q Consensus 210 -~-~~e~-l~~-------e~~~Le~EE~~L~~eLeelEke~~~l~~----el~~le~e~~~l~~eE~~~w~e~n~~q~ql 275 (385)
+ .+.. +.+ -+-.+.+....|..++..|.+-..+++. ++..++.+...++.+-...-+....++.++
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011 111 1112344444555555555544444432 556666666666655566667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 276 IAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.++........++..-.+.++..+++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777776666
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.25 E-value=2.5 Score=45.82 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=8.4
Q ss_pred CCcchhhHHHHHHHH
Q 016664 331 IPVEWDEINAAWGQA 345 (385)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (385)
..+.|.|-++-|-|-
T Consensus 344 ~~l~lke~~~q~~qE 358 (546)
T PF07888_consen 344 ASLELKEGRSQWAQE 358 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666554
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.24 E-value=2.2 Score=49.71 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHhhcCCCCcCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 145 FHSTITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~IDh-------------PLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
++++..-...||+-.++-+..+. --|..| +.++..+..+++.+.++++.-.+|.+
T Consensus 150 ~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 150 INAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555567766665433321 125554 44556688888888888887766655
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=94.21 E-value=2.2 Score=47.66 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qL 296 (385)
..+..++.....++..+..+|......+
T Consensus 663 ~~l~~~l~~~~~~~~~l~~~i~~~~~~~ 690 (880)
T PRK02224 663 EQVEEKLDELREERDDLQAEIGAVENEL 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555555555554444333
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.21 E-value=5.5 Score=38.19 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 296 (385)
.++...+.--..+...+.+|+.+...+...++.++.......+.|..|=..+..+..++.+.....+..+........++
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777888888888888888888888777777777777777777777777777766666666666666665
Q ss_pred HHHh
Q 016664 297 ELLK 300 (385)
Q Consensus 297 dkL~ 300 (385)
+.|.
T Consensus 207 d~le 210 (237)
T PF00261_consen 207 DRLE 210 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 39
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.20 E-value=2.4 Score=47.26 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=91.8
Q ss_pred cCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 165 VEQPLCLECMRVLSDKLDKEV-------DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (385)
Q Consensus 165 IDhPLC~eC~d~Lle~Ld~ql-------e~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelE 237 (385)
-..|.=.||...|.+..+.=- +.+..|.+.....|+....+.-. .-.++.+++..+.+.-++|...++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899988875533221 22222333333333322211110 012333444445555555555666665
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeee
Q 016664 238 KQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (385)
Q Consensus 238 ke~~~l~~el~~le~e~----~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~h 313 (385)
...+.|.+.++.+-... -.+-.-|++|-+|...++.++..++...+.+++++++.+.|++ ++.+.-
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~-------- 676 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPK-------- 676 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc--------
Confidence 55555555444333222 1245667777777777777777777777777777776666655 222221
Q ss_pred cCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhhc
Q 016664 314 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (385)
Q Consensus 314 dG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (385)
..+|+ +| .--+..|-.++.|-.--+..+.+++
T Consensus 677 ---~~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 677 ---KKSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ---CCCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22 3678899999999888887777654
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.06 E-value=2.5 Score=42.29 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016664 280 EERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+++..+..++..++.+++.++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666544
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=94.02 E-value=1.6 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+.+.+.+...+...+.-....++.|
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l 618 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREAL 618 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.02 E-value=2.4 Score=50.95 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~n 306 (385)
...++.++.+.+.+.+.+..+....+..+..|.+.+-++
T Consensus 392 LeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 392 VDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444445555544444
No 43
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=2.1 Score=43.86 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
++|.+.|......|+. .++++.+-..+|+.++++|++++..|.++.+.|..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344445444444432 235555566677777777777777777777776665555
No 44
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.71 E-value=1.9 Score=39.97 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIE 193 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d 193 (385)
.+..+++..++.+.++++
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344566677776666664
No 45
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.66 E-value=3.7 Score=39.88 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
+..|..|.....++|.++......++..|+.++.+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 46
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.66 E-value=0.43 Score=46.50 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 287 (385)
.++.+.+|..+|..+++++|.+..+++..++.++.+..+|++.-+..--+|..++..+.++.+.....+.
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 3555667777899999999999999999999999999999888888888888998888888877665443
No 47
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.62 E-value=2.5 Score=45.47 Aligned_cols=124 Identities=10% Similarity=0.112 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (385)
Q Consensus 188 ~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e 267 (385)
.++|-..|--|+++|..-... ..-+.+++...-+|..++.+++..|+.++..++.+++.+.-|.+.+++.-..|-..
T Consensus 193 ~~keq~~y~~~~KelrdtN~q---~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQ---ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888877632111 11234455555556666666666666666666666666666655555555445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeec
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 314 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hd 314 (385)
-..++.++.+.+|+---....++-++..|..|+.+...+....-.|+
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 55555566666666666677778888999999999888877654443
No 48
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.53 E-value=7.7 Score=38.76 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=9.1
Q ss_pred ecCCeeeeccccCCC
Q 016664 313 HDGEFGTINNFRLGR 327 (385)
Q Consensus 313 hdG~fGTINglRLGr 327 (385)
.||...+++-...|.
T Consensus 278 ~dG~V~~~~~~~~G~ 292 (423)
T TIGR01843 278 VDGTVQSLKVHTVGG 292 (423)
T ss_pred CCcEEEEEEEEccCc
Confidence 567766665555565
No 49
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.52 E-value=4.9 Score=35.28 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
|+..+...-.....++.++.+....++.|..|-...-+||+.|
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444334456677777777888888888888887888765
No 50
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.41 E-value=9.4 Score=38.79 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 016664 338 INAAWGQACLLLH 350 (385)
Q Consensus 338 INAAwGQ~~LLL~ 350 (385)
||-=|.|+--|..
T Consensus 180 vN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 180 VNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 5666777766553
No 51
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=4.6 Score=43.90 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS----------KRFKELEERYWQEFNNFQFQLIAHQEERD 283 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~----------~~l~~eE~~~w~e~n~~q~ql~~~~ee~~ 283 (385)
++...+.|..|+++.|.|++.|.++..+|+... ++...+-.+.-++.|..+-++..+..+..
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444444322 22233333444555555544444444433
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.19 E-value=5.8 Score=35.18 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.9
Q ss_pred HHHHHh
Q 016664 295 HLELLK 300 (385)
Q Consensus 295 qLdkL~ 300 (385)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 455554
No 53
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.15 E-value=3.1 Score=48.04 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
.+++.+++.....-..+|+.++.+..++...|+..+.-..+++..|...-+.-..++..+...++...++-.+
T Consensus 482 ~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~k 554 (1041)
T KOG0243|consen 482 KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEK 554 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555554444455566666655555566666666666655554433
No 54
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.15 E-value=5 Score=38.93 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
++.++.+.|..|+....++|+.+...+..++..=.+-|.+.+..+.....+.+|..-++.+++....
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666667766666666666666677777777777666666655555554444333
No 55
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.09 E-value=5.1 Score=40.21 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
|++|..|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|...++.+|+.+..+..++.--+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke-- 94 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE-- 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH--
Confidence 577888999998888775544554431 11110 111123334556666777777777777777666543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 016664 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (385)
Q Consensus 254 ~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd 307 (385)
..+ |-+.-||.......+.++..+.....+|+|.+..+.-.+
T Consensus 95 -~qv-----------~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 95 -SQV-----------NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 233 334444444555555666666677777888887776444
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.08 E-value=0.72 Score=42.89 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
-.+..++..+.+.+.....-|.
T Consensus 77 ~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 77 AKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3455666665555554443333
No 57
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.03 E-value=6.3 Score=37.26 Aligned_cols=13 Identities=8% Similarity=0.504 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIE 193 (385)
Q Consensus 181 Ld~qle~~~~E~d 193 (385)
++.+++++..|..
T Consensus 24 lq~~l~~l~~ENk 36 (194)
T PF15619_consen 24 LQRKLQELRKENK 36 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.00 E-value=3.3 Score=44.64 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
..+=.+.+-+.+|.=++..++|..++....+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777778888888888888765444
No 59
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.96 E-value=4.3 Score=42.32 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
..++.++..+..+...|...++.+++
T Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 175 AQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666666666666665543
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.92 E-value=0.44 Score=41.12 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.2
Q ss_pred cCCCceeeeecCCeee
Q 016664 304 VLNDAFPIWHDGEFGT 319 (385)
Q Consensus 304 V~nd~F~I~hdG~fGT 319 (385)
+|++=|||.| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999987 66765
No 61
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.87 E-value=1.9 Score=41.13 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
.+..+++|++.++.+.+.-..-++.. ..++...+...+....+|.++.++|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776655444422221110 122233333334444445555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 016664 257 FKELEERYW 265 (385)
Q Consensus 257 l~~eE~~~w 265 (385)
+++.+..-|
T Consensus 165 ~~~~~~~~w 173 (206)
T PRK10884 165 KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHH
Confidence 554444333
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.74 E-value=3 Score=39.82 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 016664 279 QEERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkL~ktN 303 (385)
.+++..+.++.+.+..+++.++++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555566666543
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.72 E-value=7.2 Score=35.04 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
|...|..||.+.+..+..+.....+....+..=. .|.++...+..+++..+.+|+-...++..++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae-------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAE-------HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444433333322221 2334444445555555555555555544443
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.58 E-value=4 Score=35.95 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
-.+++.|..++...+.|+..++.-+.+|..+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999988754
No 65
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.47 E-value=3.7 Score=49.35 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
...++|.-++.+.+.++..++.++..+...++.+++.
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666777777776666666553
No 66
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=92.39 E-value=4.1 Score=40.10 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETE-KQNAEVNAELKELELKSKRFK---ELE----ERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelE-ke~~~l~~el~~le~e~~~l~---~eE----~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
..+..|+++--.+-+.|..++..++ .+..-++.+++.|..+..++. ++. ..|=.+.+.+|..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r---------- 229 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKR---------- 229 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH----------
Confidence 3455566665555566677766664 445557777777776665552 112 2233333334443
Q ss_pred HHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHH
Q 016664 285 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 342 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAw 342 (385)
+...+.+|+.|+. -++.-|-.|.|-. |+ .++|+-+|||-||
T Consensus 230 ----~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 230 ----LAQLQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ----HHHHHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 4444444444443 2556677888744 22 2578889999998
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.30 E-value=13 Score=40.65 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
.-++-|.+....++.|..-|+.++..++..
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345667778888888888898888877643
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.21 E-value=27 Score=40.43 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 270 NFQFQLIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 270 ~~q~ql~~~~ee~~sl~~q~~~~~~qL 296 (385)
.+|.++..+++..++++..++.....+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555665555555555544443
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.21 E-value=13 Score=37.40 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+.|.+.|+..++.+..|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666655555543
No 70
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.12 E-value=11 Score=35.63 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444445566666666666666666655555554
No 71
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=3.3 Score=45.42 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e 260 (385)
.+++.+++.-.++|..+..+|+.+.++++++++.|+.+..++...
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666666666666666666655555433
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.92 E-value=6 Score=42.69 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 242 ~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
.+..++.++..+...++.+...++...+.+.....+..+.+..
T Consensus 380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~ 422 (569)
T PRK04778 380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER 422 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555444444444433333
No 73
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.91 E-value=11 Score=35.29 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 250 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 250 le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 296 (385)
++.....+.....++-..+..++..+.++..++..+.++...++.+.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444445566666777777777777777776666553
No 74
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.87 E-value=6.2 Score=43.10 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
++.+..+.+.|..-.+ .+. ...++.+++.+++.+.+.+..+++.++.+.+.+++++++++.+..
T Consensus 184 ~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666543322 111 123345556666666666666666666666666666666655443
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.85 E-value=11 Score=40.98 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEA 197 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~ 197 (385)
++.++..+..|.+.|..
T Consensus 111 ~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 111 LEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34444444445555543
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.69 E-value=14 Score=36.09 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 295 (385)
+..|..++...+..++.+...+......|+.. +.+.|..|=.+...++..+..++.++..+..++......
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~---l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQ---LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhh---HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 233334444444555555555555555555555444433
No 77
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.55 E-value=13 Score=35.26 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
++..+......++.||+.+..++..+
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555566666655555433
No 78
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.54 E-value=7.7 Score=44.81 Aligned_cols=141 Identities=23% Similarity=0.322 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~-------~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
+.+.+|+..++.+..+...++++++.... +++++...+..+..++...-+..|++-+.++..+....+.+.
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~-- 491 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLS-- 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44556666666666666666665555544 455555555666666666667889998888776655555544
Q ss_pred HHHHHHHHHHHHHHhccccCCCceeee-------ecCCeeeecccc-------C------C-CCCCCCcchhhHHHHHHH
Q 016664 286 SSKIEVSQAHLELLKRTNVLNDAFPIW-------HDGEFGTINNFR-------L------G-RLPKIPVEWDEINAAWGQ 344 (385)
Q Consensus 286 ~~q~~~~~~qLdkL~ktNV~nd~F~I~-------hdG~fGTINglR-------L------G-rlp~~~V~W~EINAAwGQ 344 (385)
.++.+|...-..+|+|-.=.|. ..|.|||.-.|= - | +|=++-|+=+||
T Consensus 492 -----~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndev------ 560 (1200)
T KOG0964|consen 492 -----RAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEV------ 560 (1200)
T ss_pred -----HHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHH------
Confidence 4444555555555554332111 456777643221 0 0 122356777787
Q ss_pred HHHHHHHHHhhcCCCCccceeeeecC
Q 016664 345 ACLLLHTMCQYFRPKFPYRIKIIPMG 370 (385)
Q Consensus 345 ~~LLL~tla~kl~l~F~YrykLvPmG 370 (385)
+...|..+-+ +++. |..++||-
T Consensus 561 ATkIl~~~n~---m~~G-rVTF~PLN 582 (1200)
T KOG0964|consen 561 ATKILRKLNK---MKGG-RVTFMPLN 582 (1200)
T ss_pred HHHHHHHHHh---ccCC-eeEEeecc
Confidence 4444444332 2444 66688876
No 79
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.42 E-value=3.8 Score=44.95 Aligned_cols=74 Identities=16% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--KELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l--~~eE-~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
.++|+.|-..|..++++++++.+.|.+++..+..+...- ...| +..-+..+.|+..|.+-..+.+.|+.++...
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555433211 0111 0112344556666666666666665554443
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.40 E-value=11 Score=34.19 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.|+.++..+++|...-+.-+..+..+..+.- .-+.+..++..+-.+.+.|..+|..+-.++..+.+++...+.+...|+
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444443332211100 011122333334444445555555555555555555555444444443
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=91.22 E-value=9.9 Score=42.75 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=16.7
Q ss_pred HHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHH
Q 016664 152 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDV 188 (385)
Q Consensus 152 l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~ 188 (385)
..++||=+.+-.... -|.+.....+..+..++...
T Consensus 151 r~~~ld~~~~~~~~~--~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 151 RKKILDEILEINSLE--RNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHhChHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 334444444333332 25555555565556555444
No 82
>PRK01156 chromosome segregation protein; Provisional
Probab=91.19 E-value=9.3 Score=42.99 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
++.....+.++..+...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777888888888777777777775
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.10 E-value=17 Score=37.18 Aligned_cols=167 Identities=13% Similarity=0.223 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch-------hc--c---------cCC----HHHH-------HHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR--D---------VLS----EADF-------LKEKLKIEEEERKLE 230 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~-------~~--~---------~~~----~e~l-------~~e~~~Le~EE~~L~ 230 (385)
.|-++|+....|+|.|..-.+.|... .. . .+. ...+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888887666655411 00 0 000 0111 233445667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELK------------SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e------------~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
+.|.+++.+..-+...+...+.. .+++-.+=++.+..+..+++++....+|..-+...-++.+...+|
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666655554321 122222223567777778888888888877777777777777777
Q ss_pred HhccccCCCceeee--ecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 016664 299 LKRTNVLNDAFPIW--HDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (385)
Q Consensus 299 L~ktNV~nd~F~I~--hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (385)
|..- ..+|= ++..+-.|.+|-+=- .-==..|+.+-...-|+..+|.++
T Consensus 173 LN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 173 LNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7431 11210 112232333332210 111235788888888999998876
No 84
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=90.85 E-value=13 Score=40.29 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
...|-+.|...|+..|++++.+..+++.+.....+|++ +.-....+++-||..+-+-+-+++.++.....+++.||.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455556666666666666666666666554444433 333556677888999999999999999999999999985
Q ss_pred c
Q 016664 302 T 302 (385)
Q Consensus 302 t 302 (385)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 4
No 85
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.84 E-value=9.9 Score=39.21 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (385)
Q Consensus 166 DhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~ 245 (385)
|.-...|.|..+...+...+.+ ....|++|.. ++.+-+.+++.-|+-+-.+++.+-.+...+..
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~-------~~~~L~kl~~---------~i~~~lekI~sREk~iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPE-------TKSQLDKLQQ---------DISKTLEKIESREKYINNQLEPLIQEYRSAQD 280 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555544444443 3445555542 34455566777777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 016664 246 ELKELELKSKRFK 258 (385)
Q Consensus 246 el~~le~e~~~l~ 258 (385)
++.+++.+..+..
T Consensus 281 ~ls~~~~~y~~~s 293 (359)
T PF10498_consen 281 ELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 7776666554443
No 86
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.81 E-value=6.4 Score=46.52 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.2
Q ss_pred eeecCCeee-eccccC
Q 016664 311 IWHDGEFGT-INNFRL 325 (385)
Q Consensus 311 I~hdG~fGT-INglRL 325 (385)
+|..-.-|| |.++|+
T Consensus 1149 ~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1149 LWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHcCccHHHHhhc
Confidence 564433344 889999
No 87
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.75 E-value=14 Score=44.18 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 016664 150 TVLKRAFEIA 159 (385)
Q Consensus 150 ~~l~~lFdIl 159 (385)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 88
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=10 Score=41.44 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~e 246 (385)
..|++.++..|.+|.++-.+||.|.-.|..+
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4466667777888888877777666554444
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.65 E-value=16 Score=43.40 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
+++..++..++.+...+..+++.+..+...+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555
No 90
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.64 E-value=12 Score=46.34 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.|...+..++++.....+.+..++++++.....+
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433333
No 91
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.43 E-value=14 Score=37.68 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~-~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
+|...|..|+++...+..++..+..+.-.++ .+|.+==..+|.+..+...+..+...+..+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544433322 111111134555655555555555444433
No 92
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=90.41 E-value=12 Score=37.96 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
.|-++.+++.++--.|-.-|+.+..... .++..++.....+++....+....|++++++.+.+..++...+.
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888765432 34566666555666666666667777777777766666654443
No 93
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.40 E-value=28 Score=39.18 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred HHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 154 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 154 ~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
..|-.-+..+.| .|+-.|-+..+.. +.+++..+.+|||+..+-.+.|+++
T Consensus 389 e~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 389 EDLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred HHHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444555554 4788888888766 8999999999999999888877655
No 94
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.19 E-value=19 Score=38.50 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.5
Q ss_pred cCCCCCce
Q 016664 66 STRMDNSF 73 (385)
Q Consensus 66 ~~~~d~s~ 73 (385)
--|||.|.
T Consensus 182 LERMD~s~ 189 (493)
T KOG0804|consen 182 LERMDSST 189 (493)
T ss_pred HhhcCccc
Confidence 35778776
No 95
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=90.12 E-value=0.12 Score=33.76 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.0
Q ss_pred CccchHHHHHHHHHhhcCC
Q 016664 144 GFHSTITVLKRAFEIATSQ 162 (385)
Q Consensus 144 ~lss~i~~l~~lFdIlSs~ 162 (385)
.+|+|+++...+|||+|++
T Consensus 7 ~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 7 NLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHCCTT--
T ss_pred ccchhheecccccccccCC
Confidence 4899999999999999975
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.03 E-value=19 Score=44.55 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=6.6
Q ss_pred CCce--eeccCCCC
Q 016664 70 DNSF--VVLPKQRP 81 (385)
Q Consensus 70 d~s~--vvl~~~~~ 81 (385)
-+-| .++|.+..
T Consensus 658 ~phFvRCiIPn~~K 671 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEK 671 (1930)
T ss_pred CCceeEEeccCccc
Confidence 3456 56776643
No 97
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.90 E-value=10 Score=34.39 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016664 182 DKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~ 203 (385)
-.++..+..+.+....-...|+
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LE 30 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLE 30 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHH
Confidence 3445555555555554444443
No 98
>PRK09039 hypothetical protein; Validated
Probab=89.87 E-value=14 Score=37.66 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 016664 341 AWGQACLLLHTMCQ 354 (385)
Q Consensus 341 AwGQ~~LLL~tla~ 354 (385)
.|.+++-.|..+.+
T Consensus 242 ~L~~ia~~l~~~~~ 255 (343)
T PRK09039 242 EIAKLAAALIELAK 255 (343)
T ss_pred HHHHHHHHHHHhhh
Confidence 34455544544443
No 99
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.84 E-value=13 Score=32.70 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
..+..++.|...+..++..+++++..+.+||-.+..+..
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555444443
No 100
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=89.58 E-value=2.9 Score=45.68 Aligned_cols=70 Identities=29% Similarity=0.344 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~ 308 (385)
...||-++|..+++++.+|+++..+.++++ +.+...+-|+..++..++.++.+++.|+.+|--.-.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk--------------~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELK--------------RLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 344566666666666666666655544443 334445567778888899999999999999987766
Q ss_pred eeee
Q 016664 309 FPIW 312 (385)
Q Consensus 309 F~I~ 312 (385)
..|+
T Consensus 157 LP~s 160 (907)
T KOG2264|consen 157 LPFS 160 (907)
T ss_pred eccc
Confidence 6666
No 101
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.53 E-value=17 Score=33.52 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~--------l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~ 278 (385)
..+.++|+..++.....|-++.+.... .=.+-..++.+..-+.+.|.+.-.-.+.+++.|..+
T Consensus 47 I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l 117 (159)
T PF05384_consen 47 IEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNL 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555433321 111222333333344444444444445554444433
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.43 E-value=22 Score=34.70 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+.+.++.++-...-.+..+++++...+.+|+.|+
T Consensus 104 el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 104 ELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443
No 103
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.39 E-value=31 Score=38.75 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..+|..+.++.+.+.+.++.++.++++
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 104
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=17 Score=39.88 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~--------------l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~ 283 (385)
...+|+.|.+.++++|..+..|.+. ++.+...+..+++.++.-|.+...+|+.+.-+=+.+|....
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3445667777777766666555554 33445556667778888888999999988776666665544
Q ss_pred H
Q 016664 284 A 284 (385)
Q Consensus 284 s 284 (385)
.
T Consensus 188 ~ 188 (772)
T KOG0999|consen 188 N 188 (772)
T ss_pred H
Confidence 3
No 105
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.96 E-value=20 Score=33.58 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhchhc----ccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQR---LEGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETE 237 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~---L~~~~~----~~~~~e~l~~e~~~Le~EE~~----------L~~eLeelE 237 (385)
..|+..|+.++.+-.+-|..+..-+.. +..... ......++..-+.+|++|..+ |...|+..-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 357778888888877777777766631 110000 000112333334445544442 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 238 KQNAEVNAELKELELKSKR 256 (385)
Q Consensus 238 ke~~~l~~el~~le~e~~~ 256 (385)
+....|..++..+..+...
T Consensus 95 ~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777766554433
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.81 E-value=22 Score=40.00 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
..|++.++.-|.+|.+...+||.|.-.+.+++.-|+
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 345555666666777777777777666666655444
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.63 E-value=36 Score=37.24 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+++..++.+..++..++..++.+...+..+++.++.+..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544444
No 108
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.59 E-value=23 Score=39.10 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCC
Q 016664 336 DEINAAWGQACLLLHTMCQYFRPK 359 (385)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~kl~l~ 359 (385)
.|..+-+|++-.-|..+-.++.+|
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377788888888888887776544
No 109
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.54 E-value=25 Score=38.00 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=13.4
Q ss_pred CCCccchHHHHHHHHHhhcCCCCcCCcchHH
Q 016664 142 NSGFHSTITVLKRAFEIATSQTQVEQPLCLE 172 (385)
Q Consensus 142 ~~~lss~i~~l~~lFdIlSs~s~IDhPLC~e 172 (385)
+-+|++|+. ..+..|| .++.||.|.+
T Consensus 153 ~f~F~~r~E--~eV~~~l---KnL~YPfl~s 178 (622)
T COG5185 153 GFGFTKRIE--NEVYQIL---KNLRYPFLES 178 (622)
T ss_pred CCCcchhhH--HHHHHHH---HhcCCchhhh
Confidence 355666654 3444444 2355666654
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.45 E-value=20 Score=40.19 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l 257 (385)
...+||.|...|..|++..+.+...+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444333
No 111
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.41 E-value=22 Score=41.31 Aligned_cols=63 Identities=29% Similarity=0.310 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
...+..|..++..++++..+...++++++.........-.+|-.+++.++..+.++++.|..+
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888887776666666678888888888888888887765
No 112
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=88.35 E-value=6.9 Score=41.79 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~-~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.+++++++..++++.+.+.+|-+.|+++...+++.-. .+-.+...++.+..++++++..+..++...+.+|+-+.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444444444444444443333332222 22223344455555556666666666666666665443
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.33 E-value=10 Score=40.04 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.7
Q ss_pred HHHHHHhc
Q 016664 294 AHLELLKR 301 (385)
Q Consensus 294 ~qLdkL~k 301 (385)
.+|+.+.+
T Consensus 119 ~~L~A~~r 126 (420)
T COG4942 119 EQLAALQR 126 (420)
T ss_pred HHHHHHHh
Confidence 34444444
No 114
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.31 E-value=25 Score=35.24 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELLK 300 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~---~q~~~~~~qLdkL~ 300 (385)
.+...++....+++.+..++.-|++.++. +++..--+|++....+..++.......+++. ..++++..-|++-+
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErak 128 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAK 128 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhh
Confidence 33333444444444444444444333332 2333334566666666665555444444432 23455556677766
Q ss_pred ccccC
Q 016664 301 RTNVL 305 (385)
Q Consensus 301 ktNV~ 305 (385)
+--||
T Consensus 129 Rati~ 133 (333)
T KOG1853|consen 129 RATIY 133 (333)
T ss_pred hhhhh
Confidence 65554
No 115
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.28 E-value=12 Score=30.17 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
+||.--..+...|..|+.+.+++..+-..+..+...|.++.+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444455555555555555554444444444444443333
No 116
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.22 E-value=25 Score=40.94 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=7.6
Q ss_pred ceeeccCCCCCCCCCCC
Q 016664 72 SFVVLPKQRPQSHGVPP 88 (385)
Q Consensus 72 s~vvl~~~~~~~~~~~~ 88 (385)
-+-++|=.+-++..++|
T Consensus 571 RvTiIPLnKI~s~~~s~ 587 (1174)
T KOG0933|consen 571 RVTIIPLNKIQSFVLSP 587 (1174)
T ss_pred eeEEEechhhhhccCCH
Confidence 33455555443333333
No 117
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=88.15 E-value=9.1 Score=40.61 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.+...+..++.++..++..++.++..++++|..|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444445555555555666666666777777754
No 118
>PRK11519 tyrosine kinase; Provisional
Probab=88.07 E-value=48 Score=36.85 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.+..+.++.+++.+.+..+..|+...+.++.++
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666667776666666554
No 119
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.98 E-value=9.2 Score=37.02 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
+++|...+.++++.++.+.++...+++.++.+..++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444443333
No 120
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=87.92 E-value=21 Score=38.63 Aligned_cols=179 Identities=20% Similarity=0.277 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------chhcc------------cCCHHH------HHHHHHH
Q 016664 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE----------GEARD------------VLSEAD------FLKEKLK 221 (385)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~----------~~~~~------------~~~~e~------l~~e~~~ 221 (385)
+.+=.+.+-+.+|.=++.+++|.+++...-+.+. ..... .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6666677777777777888888888764444322 11100 011111 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
++..-..+...+.+-..-...+...++++......++++-..+|.....+..+-....+.+..+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222222222222223333566677777777777888888888888888888888888887777777777776665432
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 016664 302 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMC 353 (385)
Q Consensus 302 tNV---~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla 353 (385)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++.
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~ 485 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLE 485 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 111 1112211111 111111 1133468889999988877665554443
No 121
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.85 E-value=34 Score=38.37 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
.+..|..+++.+..|...=...-+.|+.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRs 446 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRS 446 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3446777777776666665544444443
No 122
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.74 E-value=33 Score=34.53 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEK-------QNAE 242 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-~e~---l~~e~~~Le~EE~~L~~eLeelEk-------e~~~ 242 (385)
+..-++.+++|++.++++.+.-+.-|...+.+.. .++ +.. .......|+.+..+++.++.++.. +...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 4556677777777777777776666666554322 122 111 122333445555555555544421 1112
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 243 VNAELKELELKSKRFKELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 243 l~~el~~le~e~~~l~~eE-~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+.+++..++.+..+....- ...=...+....++.+++.+.+..+..|+.+...++.++
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333322111100 000113566667777888888888888888888888777
No 123
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.73 E-value=24 Score=33.03 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
...+..++.+|+++...+..++.+++.+...++..+++. .+..-..+++|.+-++.+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666655544444333211 1122233455555555555555555543
No 124
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.36 E-value=24 Score=37.70 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 281 ERDAISSKIEVSQAHLE 297 (385)
Q Consensus 281 e~~sl~~q~~~~~~qLd 297 (385)
.+.+...++.-.+.||.
T Consensus 429 ~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 125
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=87.22 E-value=13 Score=42.04 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.4
Q ss_pred CceecccCCcceE
Q 016664 20 PRWVCQNCRHFLC 32 (385)
Q Consensus 20 ~~~~Cq~C~~~l~ 32 (385)
+.+...+-+|||.
T Consensus 299 ~~i~l~~~rHPll 311 (782)
T PRK00409 299 GKIDLRQARHPLL 311 (782)
T ss_pred CcEEEcCcCCcee
Confidence 3577889999987
No 126
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.12 E-value=20 Score=34.84 Aligned_cols=38 Identities=34% Similarity=0.518 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e 260 (385)
+.+..+|..+....+.++..|.+++.+++.+..+|.+.
T Consensus 60 ee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 60 EEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455555555555555555555433
No 127
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.92 E-value=9.6 Score=42.91 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.7
Q ss_pred ceecccCCcceE
Q 016664 21 RWVCQNCRHFLC 32 (385)
Q Consensus 21 ~~~Cq~C~~~l~ 32 (385)
.+.+.+-+|||.
T Consensus 295 ~i~l~~~rhPll 306 (771)
T TIGR01069 295 KIILENARHPLL 306 (771)
T ss_pred CEEEccccCcee
Confidence 577777777765
No 128
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.86 E-value=28 Score=37.09 Aligned_cols=28 Identities=39% Similarity=0.457 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
|..|++++.+...-++-...+|++|+..
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666655555555556655543
No 129
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.64 E-value=11 Score=34.12 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238 (385)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~---~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEk 238 (385)
+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++......|+.|...+...|+.+..
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666666666666666665555554321 12345566666666666666666666666654
No 130
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.49 E-value=59 Score=36.21 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CC-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 016664 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LS-E-ADFLKEKLKIEEEERKLEAAIEETEK-------QNA 241 (385)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~-~-e~l~~e~~~Le~EE~~L~~eLeelEk-------e~~ 241 (385)
+=+..-++.|++|+..+.++.+.-+.-|+..+.+..-. ++ + ..+..+..+++.+...+..++.++.. ...
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 34555667777777777777777776666665432111 11 1 11122223333333333222222111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 242 ~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.+++++..++.+..+++.. -......+.++.+++.+.+..+..|....++.+.++=
T Consensus 343 ~l~~~~~~L~~~~~~l~~~----~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKR----VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333333322222211 2334455556666666666666777766655555443
No 131
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.39 E-value=27 Score=37.07 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
+.|+++.+++.++.....--.++..+.. .....+.+.+.+.+.|.|.++|.+|..++-.++-...++-+.+......++
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666554333333332210 000122233344445666666666666665555554444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 259 ELEERYWQEFNNFQFQLIAHQEERDAIS 286 (385)
Q Consensus 259 ~eE~~~w~e~n~~q~ql~~~~ee~~sl~ 286 (385)
.++-++..+...++.|-.+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555666666666666555555544443
No 132
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.97 E-value=37 Score=38.32 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE---~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
.++...+|.+-..|..+|.++.--..++-++..+|+.|.-.|..+= ++-.-+|-.++.++..+++|...++.|++
T Consensus 68 ~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 68 RKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444444444444443332221110 11223455555555556666555555543
No 133
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=85.92 E-value=3.3 Score=43.66 Aligned_cols=52 Identities=8% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
.+.++...++.+++.++ .+++..|++||+.|..++.-+..++.....|..|+
T Consensus 410 ~l~~~i~~l~~~i~~~~---~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVS---DSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555 35677889999999999888777776665555443
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.91 E-value=26 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
+++.|...|...+..+|.+.+.+...+..++.
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555544
No 135
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.84 E-value=15 Score=34.06 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
..+..+.+.++.+.+++.++++.|+.|...|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554444333
No 136
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.70 E-value=14 Score=29.72 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
.|..|-+.|.+........|+.|..+.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~ 42 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKI 42 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444433
No 137
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=85.69 E-value=28 Score=33.20 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
|+.+..-++..|.+-+.....|.+++........+. -..-...+.+...+..++....+|++..+.++..|.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v-------a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQV-------AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333322222 2222234445556666777777777777777777776
Q ss_pred cc
Q 016664 302 TN 303 (385)
Q Consensus 302 tN 303 (385)
.+
T Consensus 183 q~ 184 (192)
T PF11180_consen 183 QA 184 (192)
T ss_pred Hh
Confidence 53
No 138
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.66 E-value=3.4 Score=35.99 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.4
Q ss_pred cCCCceeeeecCCeee
Q 016664 304 VLNDAFPIWHDGEFGT 319 (385)
Q Consensus 304 V~nd~F~I~hdG~fGT 319 (385)
+|++=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 6999999987 57775
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.47 E-value=35 Score=32.63 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
.+|++-+.|.++...+|+|...|-+++..|+.+...
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555555555555555555555555544433
No 140
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.43 E-value=38 Score=36.01 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~-Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
.+++.-+ +.-.++|+ |+..+++++.-..++..+ ..+.+++|++-.+|.+.|.++-.....+. .+....
T Consensus 138 ~q~esll-e~~~q~da~~qq~~~ele~~d~~~~~d---~ee~kqlEe~ieeL~qsl~kd~~~~~~l~-------~e~n~~ 206 (446)
T KOG4438|consen 138 QQLESLL-ELRKQLDAKYQQALKELERFDEDVEED---EEEVKQLEENIEELNQSLLKDFNQQMSLL-------AEYNKM 206 (446)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhccccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3343333 34444444 345555555322222111 12233344444444444444444333333 333333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 258 KELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 258 ~~eE~-~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
...+. .+.+..|.+.+....+++...+|..++.++
T Consensus 207 k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~s 242 (446)
T KOG4438|consen 207 KKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQS 242 (446)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333 377888899999889988888887777544
No 141
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.41 E-value=40 Score=34.05 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCccchHHHHHHHHHhhcCCCCcCCcchHHHHHH
Q 016664 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRV 176 (385)
Q Consensus 143 ~~lss~i~~l~~lFdIlSs~s~IDhPLC~eC~d~ 176 (385)
+-+++.|.-+...-.+.|.-++--.-+|.=-...
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~ 86 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLSKE 86 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 3478888888888888888777777777644433
No 142
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.41 E-value=43 Score=34.13 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelE------------------ke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 274 (385)
+.+.+.++.||+|-..|+.+...|. ++......++..|..+..+..++-.+.-.+...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555557777777777766554 3333444555556555555555555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+..++....++-..-+-.+.+|...
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777766655555555555433
No 143
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.35 E-value=51 Score=34.43 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CC--ceeeeecCCeeeeccccCCCCCCCCcc-hhhHHH
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL---ND--AFPIWHDGEFGTINNFRLGRLPKIPVE-WDEINA 340 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~---nd--~F~I~hdG~fGTINglRLGrlp~~~V~-W~EINA 340 (385)
.+...+.++..++.+.+.....|+....+++..+-..-+ .. -|.|- +- ..+|..|+. =.=++.
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi-~~----------A~~P~~P~~P~~~~~l 417 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRII-DP----------PIVPSKPSGPNRPLLM 417 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEe-CC----------CCCCCCCCCCcHHHHH
Confidence 345566677778888888888888887777776543222 11 23331 22 224444442 222455
Q ss_pred HHHHHH-----HHHHHHHhhcCCCCc----c--ceeeeecCCcceeec
Q 016664 341 AWGQAC-----LLLHTMCQYFRPKFP----Y--RIKIIPMGSYPRIMD 377 (385)
Q Consensus 341 AwGQ~~-----LLL~tla~kl~l~F~----Y--rykLvPmGS~SkI~~ 377 (385)
++|-++ +.+..+...++-+|. - ...+-++|..+++..
T Consensus 418 ~~g~~~Gl~lg~~~~~l~e~ld~~i~~~~~ie~~lglpvLg~iP~~~~ 465 (498)
T TIGR03007 418 LAGLLGGLGAGIGLAFLLSQLRPTVRSVRDLRELTGLPVLGVIPMIAT 465 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHcCCCeEEecCCCCC
Confidence 555433 334445555555553 1 134666677776643
No 144
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=85.13 E-value=34 Score=39.22 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCCcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhchhcccCCHHHHHHHH
Q 016664 152 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEAY----------EACLQRLEGEARDVLSEADFLKEK 219 (385)
Q Consensus 152 l~~lFdIlSs~s~IDhP--LC~eC~d~Lle~Ld~qle~~~~E~d~Y----------~~fL~~L~~~~~~~~~~e~l~~e~ 219 (385)
|+.+...||..-.+-+| .|.+=.......+..=+..+.+|.+.- ...++++..+.......+...++.
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~ 600 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQR 600 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667666666677 488777766666655555555555543 333333322111000000111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELE-------------ERYWQEFNNFQFQLIAHQEERD 283 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~e---l~~le~e~~~l~~eE-------------~~~w~e~n~~q~ql~~~~ee~~ 283 (385)
+.-+.|+++|.+++.+-|+++...+.+ .+.++.....+.+-| -+-..--.-.+.++.+++.++.
T Consensus 601 ~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~k 680 (988)
T KOG2072|consen 601 QAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERK 680 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 223566667777776665555433333 112222111111110 0111111223557777888888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 016664 284 AISSKIEVSQAHLELLKR 301 (385)
Q Consensus 284 sl~~q~~~~~~qLdkL~k 301 (385)
.++.++.+.-..+|.+.+
T Consensus 681 Elq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 681 ELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHhhhhHHHH
Confidence 888888777766555543
No 145
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.96 E-value=11 Score=40.29 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~ 259 (385)
.|..++++++++.+.+..+=+.|.+|.++|.+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 146
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.73 E-value=13 Score=39.55 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
+......++..++.++++++..+..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 142 RLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555544444443
No 147
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.66 E-value=38 Score=32.34 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH--- 295 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q--- 295 (385)
...++.+..++.+++++..+..+++.+.+..............+.........+..+.........+..++...+.+
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555554444443332223333333333444444444444444444444444432
Q ss_pred ----HHHH-------hccccCCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhhcCCCCc
Q 016664 296 ----LELL-------KRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP 361 (385)
Q Consensus 296 ----LdkL-------~ktNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~ 361 (385)
+=-+ +..+.....|.|. .+..+|+.-.-..|.. .-..=+.-.+=-+.||-.++.-.+-+.+.
T Consensus 152 ~l~~ifpI~~~~~~~~~~~~~~~~~~I~---~~~lp~~~~~~~~~~~-~isaALgyvahlv~lls~yL~v~Lpy~i~ 224 (302)
T PF10186_consen 152 ELSEIFPIEQVSSPRRPSDSSSSEYTIC---GLPLPNSRDFNSLPDE-EISAALGYVAHLVSLLSRYLGVPLPYPIT 224 (302)
T ss_pred HHHHHhCceeecccccCCCCCCCCeeec---CcccCCCcccccCCHH-HHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 2222 2223346778887 3344666555555542 33344444443334444444445666654
No 148
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.56 E-value=21 Score=39.78 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=12.0
Q ss_pred eeeecCCcceeeccCC
Q 016664 365 KIIPMGSYPRIMDSNN 380 (385)
Q Consensus 365 kLvPmGS~SkI~~~~~ 380 (385)
..+|.||+|.+-..++
T Consensus 329 e~~p~s~~S~~n~~~g 344 (861)
T KOG1899|consen 329 ESFPVSSSSTTNNGKG 344 (861)
T ss_pred ccccccccccccccCC
Confidence 3789999998876443
No 149
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.45 E-value=38 Score=32.55 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.|+.+-+.|.++++.++...+.++..+..++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~ 83 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQE 83 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333333333333333
No 150
>PRK06798 fliD flagellar capping protein; Validated
Probab=84.44 E-value=4.1 Score=42.85 Aligned_cols=54 Identities=7% Similarity=0.241 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
.++.++.+...++.++++++. +++..|++||+.|+.+...+..++.+...+.++
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666555553 567788999999999998877777665544443
No 151
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=84.41 E-value=54 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 295 (385)
.+-.|++|....-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777788888888887654443
No 152
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.31 E-value=41 Score=40.32 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~ 248 (385)
..++.++++.++++...+.+++.
T Consensus 299 ~~~~~~~~~~le~~~~~l~~~~~ 321 (1353)
T TIGR02680 299 ERELDARTEALEREADALRTRLE 321 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433333333333
No 153
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=84.15 E-value=19 Score=35.95 Aligned_cols=153 Identities=23% Similarity=0.327 Sum_probs=81.5
Q ss_pred CccchHHHHHHHH----HhhcC---CCCcCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhchhccc--CC-
Q 016664 144 GFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS- 211 (385)
Q Consensus 144 ~lss~i~~l~~lF----dIlSs---~s~IDhPLC~eC~d~Lle~Ld~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~~- 211 (385)
...+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|.-|+.-.-++ +.
T Consensus 94 Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~ 173 (269)
T PF05278_consen 94 VKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRS 173 (269)
T ss_pred EcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 3566778899999 78754 45555567889988899999763 3333 233333345555554321110 00
Q ss_pred -HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 212 -EADFLKE------KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 212 -~e~l~~e------~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
-+++.+. ....+.+.+.....|+..+.|.+....++.+.+++.+.+.+.. .+..-.|.+++.++-.
T Consensus 174 ~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 174 KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 0111111 1112333333444444444444444444444444443333222 3445557777777777
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 016664 285 ISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~ktN 303 (385)
+.-.+.+++...++..--.
T Consensus 247 l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 247 LSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 7777788888887765433
No 154
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.05 E-value=36 Score=37.21 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
+.=++++.+++.-...|..-...|+.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaq 64 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQ 64 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777777786544444443
No 155
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=84.04 E-value=17 Score=41.08 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=4.4
Q ss_pred CcchhhH
Q 016664 332 PVEWDEI 338 (385)
Q Consensus 332 ~V~W~EI 338 (385)
.|+++++
T Consensus 661 ~v~~~~l 667 (771)
T TIGR01069 661 KVHGSEL 667 (771)
T ss_pred EEeHHHc
Confidence 4666665
No 156
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.84 E-value=10 Score=36.11 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
..++..|+..=..+....-++|..+..|++|+.+++.+...++
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666777777777777776666554443
No 157
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.80 E-value=39 Score=39.99 Aligned_cols=19 Identities=47% Similarity=0.795 Sum_probs=13.7
Q ss_pred eeeccc--cCCCCCCCCcchh
Q 016664 318 GTINNF--RLGRLPKIPVEWD 336 (385)
Q Consensus 318 GTINgl--RLGrlp~~~V~W~ 336 (385)
|-|+|| |||-|..++..++
T Consensus 613 G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred CCCCccccccccccccchHHH
Confidence 668888 8888876665554
No 158
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.51 E-value=46 Score=32.42 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 295 (385)
+.+-..|.+...+++.+...|..+....+.+...|...=..+-.....+.-.......+...+..++..++..
T Consensus 46 eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 46 EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433333344443333444444444444444444444555555555543
No 159
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.25 E-value=59 Score=40.23 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
++..+.+++.+..+.+.|..-|+.+.....+... -.....+-..++.++.+|.++...++.+..-|..++...-.+...
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~ 210 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLS 210 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455556666677777777666665432111000 000011111234445555555555555554444444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+ +.+.=.++..++-+|.....+...+..++.....+...|
T Consensus 211 ~---~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eL 250 (1822)
T KOG4674|consen 211 L---RREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEEL 250 (1822)
T ss_pred H---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222233444444444444444444444444333333
No 160
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.11 E-value=63 Score=38.21 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=3.0
Q ss_pred cccccccc
Q 016664 37 DSYADKYL 44 (385)
Q Consensus 37 d~~~~~~~ 44 (385)
+||++-|+
T Consensus 56 ksF~~yYL 63 (1201)
T PF12128_consen 56 KSFDDYYL 63 (1201)
T ss_pred hhHHHHcC
Confidence 33333333
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=83.09 E-value=67 Score=37.99 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 016664 336 DEINAAWGQACLLLHTMCQ 354 (385)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~ 354 (385)
..+...+.++--.|..|..
T Consensus 774 ~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 774 QQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 162
>PRK11519 tyrosine kinase; Provisional
Probab=83.03 E-value=23 Score=39.33 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
+...++.|++|+..+.++.+.-+.-|+..+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777766666666555555543
No 163
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=82.94 E-value=27 Score=39.54 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=11.2
Q ss_pred CCCccchHHHHHHHHHhhc
Q 016664 142 NSGFHSTITVLKRAFEIAT 160 (385)
Q Consensus 142 ~~~lss~i~~l~~lFdIlS 160 (385)
-++||..+..+..+...++
T Consensus 388 lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred hhHHHHHHHHHHHHHHhCC
Confidence 3556666666666655543
No 164
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.87 E-value=32 Score=36.12 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
...+..|..++.+..+....+..-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788889999988898998888888753
No 165
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.82 E-value=23 Score=28.53 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
.++++|+.+...+..+...|+.+..+|
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333333333343333333
No 166
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.73 E-value=72 Score=35.20 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 243 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
+.++++.++......+.+=.+-|.+.-.++.+..+...+...-+..+.....+++++.+.
T Consensus 424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 334444444333333333346678888888888888888887777788888889998887
No 167
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.65 E-value=44 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
-+.|.+++..-......+...+.+++..++.|+
T Consensus 152 ~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 152 NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555554443
No 168
>PLN03188 kinesin-12 family protein; Provisional
Probab=82.37 E-value=69 Score=38.40 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 016664 243 VNAELKELELKSKRFKELEERYWQEFNN-FQFQLIA 277 (385)
Q Consensus 243 l~~el~~le~e~~~l~~eE~~~w~e~n~-~q~ql~~ 277 (385)
|++||..|+.| .+.|.+||++-|. +|.||..
T Consensus 1160 laae~s~l~~e----reker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1160 LAAEISALKVE----REKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhh
Confidence 55555555443 3567788888775 4555543
No 169
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.34 E-value=45 Score=31.48 Aligned_cols=109 Identities=27% Similarity=0.333 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKI-------EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~L-------e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+++-...-..|...|..|+...-++.....-+.++..+ ..+.+.+++++.+-+.+..+++.+|.+++.+..++
T Consensus 64 idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el 143 (190)
T PF05266_consen 64 IDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILEL 143 (190)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33334444556666666665433322211112223333 33344455555555555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 258 ~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
.+.....=........++..++.....++..+..+.
T Consensus 144 ~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 144 QRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444555555544444444444433
No 170
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.31 E-value=25 Score=29.29 Aligned_cols=72 Identities=15% Similarity=0.313 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
...++..+-.+-+.+..+++.+..++-.+.+++..+.......+ ..-.+...+..++..++.++..++.++.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~----~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAE----ELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667778888888888888888888888887766421111 1223334444444444444444444433
No 171
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.16 E-value=18 Score=41.17 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=4.6
Q ss_pred eeccccCC
Q 016664 319 TINNFRLG 326 (385)
Q Consensus 319 TINglRLG 326 (385)
|-||||--
T Consensus 632 t~~~~~~~ 639 (1118)
T KOG1029|consen 632 TTNGFPAN 639 (1118)
T ss_pred ccccCchh
Confidence 46666643
No 172
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=82.08 E-value=23 Score=39.34 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~ 248 (385)
..+..++.+++.++.+++.++.
T Consensus 307 ~~~l~~~~~l~~ql~~l~~~~~ 328 (726)
T PRK09841 307 KAVLEQIVNVDNQLNELTFREA 328 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544433
No 173
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.97 E-value=59 Score=36.79 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=6.8
Q ss_pred chHHHHHHHHHhh
Q 016664 147 STITVLKRAFEIA 159 (385)
Q Consensus 147 s~i~~l~~lFdIl 159 (385)
-||.++.+=|..+
T Consensus 409 QRva~lEkKvqa~ 421 (961)
T KOG4673|consen 409 QRVATLEKKVQAL 421 (961)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 174
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.87 E-value=70 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+.+...++..+..++..++.++..|
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555555555555555544
No 175
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.80 E-value=1.1e+02 Score=35.52 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+..+...|.....++.++.+.-..-+.+++++..+|++.=++.-++.........+..+.+++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555544444554444445555566666777777788888888888
Q ss_pred c
Q 016664 302 T 302 (385)
Q Consensus 302 t 302 (385)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 7
No 176
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=81.56 E-value=50 Score=37.62 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+.+|-+++...+.+-+++..+..++ .+.|..+++.+=++-...+-.+++.|.+.+.|...|..-++.--+++.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 3444444555554444444333222 1223344444444566777888888888888888887777777777777764
No 177
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.45 E-value=59 Score=33.95 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
...+.|++|+..++.+.+.-+.-|....
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666665555554
No 178
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.30 E-value=49 Score=39.33 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 016664 189 TRDIEAYEACLQ 200 (385)
Q Consensus 189 ~~E~d~Y~~fL~ 200 (385)
+++...|..-|+
T Consensus 514 ~~~~~~~~eele 525 (1317)
T KOG0612|consen 514 EALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 179
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.05 E-value=47 Score=38.73 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
++.+++++-.......++||++.+++.+++..+..+.
T Consensus 263 ~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~ 299 (1072)
T KOG0979|consen 263 ELRKLEKEIKPIEDKKEELESEKKETRSKISQKQREL 299 (1072)
T ss_pred HHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHH
Confidence 3334444444444445566666666666655555433
No 180
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=80.90 E-value=1e+02 Score=35.71 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=7.2
Q ss_pred eccccCCCC
Q 016664 320 INNFRLGRL 328 (385)
Q Consensus 320 INglRLGrl 328 (385)
||.++|-+-
T Consensus 563 i~ql~l~~~ 571 (980)
T KOG0980|consen 563 INQLELDSS 571 (980)
T ss_pred HHHhhcccc
Confidence 888888764
No 181
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=80.86 E-value=66 Score=35.99 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~ 283 (385)
++.......+++..|.++...+.+++..+..+...+.++-++.|+.++.++.+|.+....+.
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666666677777777777777777888888887666665555444
No 182
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=80.80 E-value=44 Score=33.38 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.+..++.+|..|+..|+.-..|+++..+.+..|+
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555444444444444
No 183
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.64 E-value=53 Score=36.25 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
++.|+.+++.+..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665555554
No 184
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=38 Score=30.06 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+.|+.++..+.-+++.+..-|+.++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666543
No 185
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=80.44 E-value=6.2 Score=42.23 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 237 Eke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
.++...++.+++.+. ++++..|++||..||.+...+...+.....|..+
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~ 476 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQ 476 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555554 4678999999999999987766666555444444
No 186
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=80.33 E-value=90 Score=33.62 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 239 e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
+-.....+....+.+...+..+=++.=......+..|.....+.....+--..+..++..|...
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~ 443 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSES 443 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333333344444444444445555555566666666666665555666666665443
No 187
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.70 E-value=67 Score=37.02 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el 247 (385)
+-|.|.+.+..++.++++++..-..+|
T Consensus 138 e~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 138 ENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 334444455555555555555444443
No 188
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.53 E-value=18 Score=37.86 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 162 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (385)
Q Consensus 162 ~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~ 241 (385)
.|.+.--+...-....++.|+.++..+..+.......+.++...........+..+.+.++.+....+.+++++++.++.
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34343333323445556677777777777777777667666542211111122233334444555555555555555554
Q ss_pred HHHHHHH
Q 016664 242 EVNAELK 248 (385)
Q Consensus 242 ~l~~el~ 248 (385)
++.++++
T Consensus 400 ~l~~~l~ 406 (451)
T PF03961_consen 400 ELKEELE 406 (451)
T ss_pred HHHHHHH
Confidence 4444443
No 189
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.50 E-value=99 Score=33.64 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~---e~~~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
..|....+.+|+.|..+...|..+++...- +.+....+-++..++.+...-+...+.
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 333333444444444444444444433221 112223333455566655554444333
No 190
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.38 E-value=9.3 Score=37.47 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 304 (385)
++.-|+....++++|+.....++...+.++++|++.||
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666777776665
No 191
>PRK12704 phosphodiesterase; Provisional
Probab=79.18 E-value=99 Score=33.46 Aligned_cols=11 Identities=27% Similarity=0.217 Sum_probs=4.3
Q ss_pred eeeecCCeeee
Q 016664 310 PIWHDGEFGTI 320 (385)
Q Consensus 310 ~I~hdG~fGTI 320 (385)
++-.|.--|-|
T Consensus 215 ~lp~d~mkgri 225 (520)
T PRK12704 215 NLPNDEMKGRI 225 (520)
T ss_pred ecCCchhhcce
Confidence 34344333333
No 192
>PRK11281 hypothetical protein; Provisional
Probab=79.18 E-value=60 Score=38.43 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
+.|+++++++.++.....+-|+++++
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666654
No 193
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=79.11 E-value=34 Score=28.44 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEF 268 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~--~~w~e~ 268 (385)
.+-++.||+|..-|.+.|+.+|++++=...+|..++.+...|-.... .||-+.
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~ 60 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDL 60 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCccccc
Confidence 45677789999999999999999999999999999998888876666 566554
No 194
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.94 E-value=25 Score=32.96 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.++....+|.++++.++.+.+++.+++....
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666665553
No 195
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.64 E-value=1.5e+02 Score=35.09 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhc
Q 016664 290 EVSQAHLELLKR 301 (385)
Q Consensus 290 ~~~~~qLdkL~k 301 (385)
.+.+.++..|+-
T Consensus 547 a~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 547 AHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 196
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=78.56 E-value=75 Score=36.72 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeee
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 312 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~ 312 (385)
+-..|+.|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|...
T Consensus 993 ~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 993 FARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 34455566677777777888888888888888887777666666666666666544
No 197
>PRK07737 fliD flagellar capping protein; Validated
Probab=78.45 E-value=9 Score=40.93 Aligned_cols=51 Identities=16% Similarity=0.396 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
.|.++...++.++..++. +++..|++||+.|+.++.-+..++.....|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQD---RLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666664 566778899999999988877776555544443
No 198
>PF13514 AAA_27: AAA domain
Probab=78.36 E-value=86 Score=36.66 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCC
Q 016664 334 EWDEINAAWGQACLLLHTMCQYFRP 358 (385)
Q Consensus 334 ~W~EINAAwGQ~~LLL~tla~kl~l 358 (385)
+...+.+-+-..--=+..+...+|+
T Consensus 304 dl~~~~~e~~~~~~~~~~~~~~lg~ 328 (1111)
T PF13514_consen 304 DLPRLEAELAELEAELRALLAQLGP 328 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444444444344444445553
No 199
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.16 E-value=1.2e+02 Score=33.71 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=12.6
Q ss_pred CCcchHHHHHHHHHHHH
Q 016664 166 EQPLCLECMRVLSDKLD 182 (385)
Q Consensus 166 DhPLC~eC~d~Lle~Ld 182 (385)
..|--+||-.+|.+..+
T Consensus 553 SsP~~~E~~~lL~~a~~ 569 (741)
T KOG4460|consen 553 SAPPPEECLQLLSRATQ 569 (741)
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 34668999999887554
No 200
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.08 E-value=14 Score=38.65 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+.++|.++++++..+.+++++.+..++.... ........-..+..+......+.+++..+..++...+.+++++
T Consensus 335 ~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 335 KLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444443111 1111112224445555555666666666666667666667766
No 201
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.93 E-value=70 Score=39.63 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
...|.....++.++|+.+..+...+..++..+.
T Consensus 124 kr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~ 156 (1822)
T KOG4674|consen 124 KRQLMELLERQKAELEALESENKDLNDQLKSST 156 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555544444444444333
No 202
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.92 E-value=67 Score=30.77 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+..+...+|.|-..|.+++..|..+...+..+...++.....|
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3444455666666666666666666666666666666555555
No 203
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=77.89 E-value=7.4 Score=43.15 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
..+.++++...++.++++++ .+++..|++||+.|..++..+..++.....|.+++
T Consensus 601 r~~~l~~~i~~l~~~i~~~e---~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~ 655 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYE---KKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFN 655 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665 46788899999999999888777776555554443
No 204
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.85 E-value=67 Score=31.79 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
+.+++..++.|-+++..+|+.++.|.+.++..++.+.
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3444444444444444444444444444444444333
No 205
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.67 E-value=34 Score=27.31 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
++.+.+-.++...-.+...+...++....+|+.++
T Consensus 33 ~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 33 RERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555566666666666666666666666554
No 206
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.65 E-value=40 Score=28.62 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
++...+.++..++.++++...+..++.+++.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555443
No 207
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=77.32 E-value=1e+02 Score=32.65 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..-++.-.+..+|.+.+.|...+..+++....-||.
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 445566666667777777776666666666666664
No 208
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.18 E-value=1.3e+02 Score=35.38 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDI 192 (385)
Q Consensus 181 Ld~qle~~~~E~ 192 (385)
|.++.++++..+
T Consensus 413 Ls~k~e~Leeri 424 (1195)
T KOG4643|consen 413 LSKKHEILEERI 424 (1195)
T ss_pred HhHHHHHHHHHH
Confidence 333444444333
No 209
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=77.04 E-value=37 Score=33.18 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (385)
++.+++.++.+...-..-++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~ 97 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTK 97 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 210
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.01 E-value=1.2e+02 Score=33.05 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-----------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----------------DVLSEADFLKEKLKIEEEERKLEAAIEET 236 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-----------------~~~~~e~l~~e~~~Le~EE~~L~~eLeel 236 (385)
++-++..++.++..++...+.-=..++.+...-. =.+...++.+++..+++....+...|+.+
T Consensus 192 A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 192 AREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5556666777777766666553333333322110 01122234455555555555555554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 237 Eke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
+...+...+..+..++..|-+.=++=-..++.....+..+.+-+..+..+..+....+++|+..
T Consensus 272 --~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 272 --ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223333344444444333222221123333344444555555555666667777777777654
No 211
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.81 E-value=78 Score=36.37 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=6.5
Q ss_pred HHHHHHHHHh
Q 016664 194 AYEACLQRLE 203 (385)
Q Consensus 194 ~Y~~fL~~L~ 203 (385)
.|+.++++|.
T Consensus 904 ~~e~~~~~l~ 913 (1259)
T KOG0163|consen 904 NYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHhh
Confidence 4666777665
No 212
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.70 E-value=95 Score=33.98 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
.+|.-+|+.+...+.+++..+--|.+++.+-|....-.-.++..++++.-..|....-.+.+.++|+..+
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777666665555544443333223333333333334444444555666666654
No 213
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.62 E-value=94 Score=34.48 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=17.0
Q ss_pred CCCCCCc-chhhHHHHHHHHH-----HHHHHHHhhcCCCC
Q 016664 327 RLPKIPV-EWDEINAAWGQAC-----LLLHTMCQYFRPKF 360 (385)
Q Consensus 327 rlp~~~V-~W~EINAAwGQ~~-----LLL~tla~kl~l~F 360 (385)
..|..|+ ++.=.+.+.|-++ +.+.++...++-+|
T Consensus 420 ~~P~~P~~P~~~~~l~~~~~~gl~lg~~~a~l~e~~d~~i 459 (754)
T TIGR01005 420 SVPSEPYFPKKGPIVGLAAVLGLLLGAIFALLRELFSGRA 459 (754)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3555665 4455566665433 23344445555455
No 214
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=76.56 E-value=35 Score=27.49 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
..|++++..+.....+...|.+++.....+++.|..
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887777777777777777777766666643
No 215
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=76.44 E-value=45 Score=27.98 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
|+...+.+..+++.++++...+..++.+++.+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555443
No 216
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.14 E-value=1.5e+02 Score=33.90 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016664 228 KLEAAIEETEK 238 (385)
Q Consensus 228 ~L~~eLeelEk 238 (385)
.|..+++.|..
T Consensus 340 ~Lqsdve~Lr~ 350 (775)
T PF10174_consen 340 MLQSDVEALRF 350 (775)
T ss_pred HHHHhHHHHHH
Confidence 33333333333
No 217
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.07 E-value=29 Score=28.26 Aligned_cols=35 Identities=40% Similarity=0.419 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
..|+...+.+..+++.++++...+..++.+++.+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777666543
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.99 E-value=48 Score=31.05 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~l 250 (385)
...+.+++++|+++++++.+++...
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666655533
No 219
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.93 E-value=30 Score=36.85 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
..++..++.+..|...|..+|.+-+++-.. ....+..|....++|..+|...|..--..++.+...+.+-+ .-++
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e--k~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse---ssle 323 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQE--KLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE---SSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHH
Q ss_pred HHHHHHHHHHHHH
Q 016664 259 ELEERYWQEFNNF 271 (385)
Q Consensus 259 ~eE~~~w~e~n~~ 271 (385)
-.|++|+.++-.|
T Consensus 324 mdeery~Ne~~~~ 336 (552)
T KOG2129|consen 324 MDEERYLNEFVDF 336 (552)
T ss_pred HHHHHHHhhhhcc
No 220
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.78 E-value=1.1e+02 Score=34.07 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 282 RDAISSKIEVSQAHL 296 (385)
Q Consensus 282 ~~sl~~q~~~~~~qL 296 (385)
..++..+.+....||
T Consensus 225 ~~~Lq~q~dq~~~~L 239 (617)
T PF15070_consen 225 AQSLQEQRDQYLGHL 239 (617)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 221
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.72 E-value=1.2e+02 Score=32.66 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 016664 232 AIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~---e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~ 308 (385)
.++++-...+++.+++..++. +.+.++++.++++++|..+-.+|.... .....+ ....-...|+..+.-+..
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R---~~~a~~--l~~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR---RKAAER--LAKRVEQELKALAMEKAE 397 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHhCCCCCcE
Confidence 445555555555555555443 344555555566666665555444332 222222 222334557777788889
Q ss_pred eeeee
Q 016664 309 FPIWH 313 (385)
Q Consensus 309 F~I~h 313 (385)
|+|..
T Consensus 398 f~v~~ 402 (563)
T TIGR00634 398 FTVEI 402 (563)
T ss_pred EEEEE
Confidence 98864
No 222
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=75.33 E-value=55 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016664 279 QEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+.+.+.+.+++..++.+|+.++
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444
No 223
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=75.30 E-value=21 Score=30.42 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
|=.+|-+++..+-+...+|+.+|..+.....+....+ +.+.+|+.++..=-.++++. .+..+..+.|..+++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K----~Rc~yL~~KL~HIK~ 94 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKK----KRCEYLHNKLSHIKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHHH
Confidence 3455677777777777777778877777777777777 88999999863333444333 344555555555543
No 224
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.84 E-value=1.8e+02 Score=34.17 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=9.6
Q ss_pred cCCCCCcccccccccccC
Q 016664 50 STMHGSSIHASNSVLGST 67 (385)
Q Consensus 50 ~~~~~~~~~~~~s~~~~~ 67 (385)
|++..|++.-+++++|..
T Consensus 103 ss~~tSla~Ss~kllg~~ 120 (1243)
T KOG0971|consen 103 SSPGTSLAASSEKLLGRR 120 (1243)
T ss_pred CCCCCChhhhhhhhhccc
Confidence 455555555555555543
No 225
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.81 E-value=1.1e+02 Score=35.24 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=6.7
Q ss_pred cCCCCcccceEE
Q 016664 101 QSGKAMDESFVV 112 (385)
Q Consensus 101 ~~~~~~~eSfV~ 112 (385)
..++.|.-|||+
T Consensus 124 a~p~~m~~s~v~ 135 (1118)
T KOG1029|consen 124 AAPRRMSSSPVV 135 (1118)
T ss_pred ccccccCCCccC
Confidence 334556666666
No 226
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.72 E-value=84 Score=32.27 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.+.+.+++..|+-|-.+|+-|-++..++..++.+++...++.
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777778777777777777777776655443
No 227
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.67 E-value=49 Score=32.77 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=34.3
Q ss_pred eeecCCeeeeccccCCCCC-------CCCcchhhHHHHHHHHHHHHHHHHhhcCCCCc-cceeeeecCC
Q 016664 311 IWHDGEFGTINNFRLGRLP-------KIPVEWDEINAAWGQACLLLHTMCQYFRPKFP-YRIKIIPMGS 371 (385)
Q Consensus 311 I~hdG~fGTINglRLGrlp-------~~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~-YrykLvPmGS 371 (385)
|-+.|+|-||||-|+ ..| +.++--.-.|++=|-.=+|+.....+ +..++ ++.+|.|++-
T Consensus 169 Ir~v~g~~~vdg~~~-~~P~TIkAIGd~~~m~~~~~~~ggl~d~~~~~~~g~-~~~~e~~dv~i~a~~~ 235 (247)
T COG3879 169 IRCVGGTLLVDGRRL-SAPYTIKAIGDPPAMLAALNAPGGLQDLLLERRSGV-GVEEEVNDVQIPAYDQ 235 (247)
T ss_pred EEecCCeEEECCeec-CCCeEEEEecChHHHHHHhhccchHHHHHhhhhhce-eeeEeeceeeeccccC
Confidence 556689999999999 554 24445555666655544444433322 22333 4466777764
No 228
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=74.64 E-value=12 Score=37.77 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCc--cc
Q 016664 341 AWGQACLLLHTMCQYFRPKFP--YR 363 (385)
Q Consensus 341 AwGQ~~LLL~tla~kl~l~F~--Yr 363 (385)
-.|.++| .+....++|+ |. ||
T Consensus 310 l~GD~ll-aaa~isY~G~-f~~~~R 332 (344)
T PF12777_consen 310 LVGDSLL-AAAFISYLGP-FTPEYR 332 (344)
T ss_dssp HHHHHHH-HHHHHHCCCC-TSHHHH
T ss_pred cHHHHHH-HHHHHHHcCC-CCHHHH
Confidence 3554444 4444447775 54 66
No 229
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=74.30 E-value=1.3e+02 Score=32.42 Aligned_cols=29 Identities=10% Similarity=0.324 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
++.+.+...+++..+++-.+++..+.+.|
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 230
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=74.19 E-value=1.4e+02 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEA 194 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~ 194 (385)
...|++||+.+....-+
T Consensus 26 ~~~lk~~l~~~~~~~~~ 42 (769)
T PF05911_consen 26 AASLKQQLEAATQQKLA 42 (769)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 34466666666544433
No 231
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.00 E-value=22 Score=27.96 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
.+|+.+....-..+...|++.|+...++..+|..|+.+.+.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666666666666666666554433
No 232
>PRK08724 fliD flagellar capping protein; Validated
Probab=73.58 E-value=17 Score=40.56 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 234 eelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
+.|.++...++.+++.++. +++..|++||+.|+.+...+..++....+|.++
T Consensus 620 ~sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s~ 671 (673)
T PRK08724 620 KSLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMMNA 671 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666653 567788999999999988877776655554443
No 233
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.43 E-value=1e+02 Score=33.80 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CCCceeeeec
Q 016664 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 314 (385)
Q Consensus 242 ~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV-------~nd~F~I~hd 314 (385)
.+...++.++......+..-.++....+.+..+-.+.++.+..+..++.-.... +.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~---mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY---MEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCcHHHHHHHHhhhhH
Confidence 455555555555555555555666666666666666665555555554444433 345554 3445666654
Q ss_pred CCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 016664 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (385)
Q Consensus 315 G~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (385)
=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122 3444 5888999999999988888776543
No 234
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=73.04 E-value=94 Score=31.52 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
..|.-|+..|--+-.-|...|+++|....++..+++
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444445555556666666666666665554
No 235
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=72.98 E-value=1.1e+02 Score=30.72 Aligned_cols=28 Identities=7% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
+..+.....+.|..+..+.+.|+..|+.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555554444443
No 236
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.97 E-value=1.6e+02 Score=32.72 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+.++.+++.+.+.....|+....+++.++
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666655566665555554443
No 237
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.82 E-value=73 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
+..+...|..++.+++++...+..++..+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444443
No 238
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.81 E-value=72 Score=34.06 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 212 ~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
..++..+.++-.+.+++|..-.--+|+|..++.+.+...+..+..|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777777777777777677778888887777776665544443
No 239
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=72.75 E-value=71 Score=30.62 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qL 296 (385)
+..+.+.++.|+.|......+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444443
No 240
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=72.69 E-value=15 Score=30.32 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 016664 263 RYWQEFNNFQF 273 (385)
Q Consensus 263 ~~w~e~n~~q~ 273 (385)
+..++||+.+-
T Consensus 43 ~lLheYNeiKD 53 (83)
T PF07061_consen 43 KLLHEYNEIKD 53 (83)
T ss_pred HHHHHHhHHHH
Confidence 46678887753
No 241
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=72.63 E-value=30 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~ 268 (385)
-.+|.+++.+|...+..|-..+..++.|...|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 446888888888888888888888888877776544 455555
No 242
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=72.55 E-value=2.3e+02 Score=34.33 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=7.3
Q ss_pred cchHHHHHHHHHhhc
Q 016664 146 HSTITVLKRAFEIAT 160 (385)
Q Consensus 146 ss~i~~l~~lFdIlS 160 (385)
..++..|.++=.||+
T Consensus 1521 ~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1521 QERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHhcccHHHHHH
Confidence 344444555555553
No 243
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=72.49 E-value=1.1e+02 Score=31.79 Aligned_cols=20 Identities=15% Similarity=0.239 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 177 LSDKLDKEVDDVTRDIEAYE 196 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~ 196 (385)
.+..|..++..+...+....
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~ 305 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLS 305 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777766665555544
No 244
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.32 E-value=36 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.|+.-...|....++|..|...+.+++..+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444443
No 245
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=72.25 E-value=71 Score=32.35 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
..+|...+-....++.|+..+..++++|.
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556666666666666554
No 246
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.09 E-value=49 Score=26.44 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
+.....-.+...+.+|.+.+..++
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444443333
No 247
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.04 E-value=82 Score=29.02 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 274 (385)
.++.|.+.|...++.|+.+...+...++.+.....++++.|.+.-++|+.++-.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 456666677777777777777777666666566667777776666677666554
No 248
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.04 E-value=1.5e+02 Score=31.88 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYE 196 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~ 196 (385)
+.++...+..+.|...|.
T Consensus 224 ~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 333334444455555565
No 249
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.02 E-value=88 Score=29.33 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 274 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l-~~eE~~~w~e~n~~q~q 274 (385)
..++.+...|..++++|+++...+....+.++...... ..+++.+-.+...++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777777777777655543 33344444444444443
No 250
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.59 E-value=34 Score=38.24 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~ 263 (385)
|.+++..+...|+++.+++.+-.+|+.++..+.+.+-.+...
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555666666666666666666666666666665555544443
No 251
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=71.42 E-value=94 Score=30.39 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
.++|...+..+++.+|.+..+|...+.+++++.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455566667777777777777766666666543
No 252
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=71.28 E-value=1.2e+02 Score=30.62 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 278 HQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+.+.+.++..||+.-..|++++-+
T Consensus 140 L~eKlK~l~eQye~rE~~~~~~~k 163 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHFEKLLK 163 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666667666666666544
No 253
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.25 E-value=1.1e+02 Score=30.11 Aligned_cols=58 Identities=12% Similarity=0.375 Sum_probs=27.3
Q ss_pred ccchHHHHHHHHHhhc-CCCCcCCcc-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 145 FHSTITVLKRAFEIAT-SQTQVEQPL-----CLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (385)
Q Consensus 145 lss~i~~l~~lFdIlS-s~s~IDhPL-----C~e-C~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (385)
++-......++|..+| +...+.-|| |.| |+..+-+.++...+....=...|..|...+
T Consensus 87 y~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~sl 151 (243)
T cd07666 87 YFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETL 151 (243)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777765 355566665 333 333444433333333333333444444433
No 254
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=71.18 E-value=83 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+..++.|+.++..+..-+..++.+++-|+
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~ 47 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLE 47 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777776554
No 255
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.92 E-value=69 Score=27.90 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
+++..+-+..+|+.+|++...+...+.+++.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 256
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.92 E-value=1.3e+02 Score=33.52 Aligned_cols=133 Identities=14% Similarity=0.238 Sum_probs=73.1
Q ss_pred HHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016664 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (385)
Q Consensus 153 ~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~-~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~ 231 (385)
.++-.||+..+..|. +|...|-. +-.-+++...+- .+-|. .++... .-..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 577778999998886 55555433 333333332222 11111 111110 11235677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH---QEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~---~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
.+..+..-.+.+..++.........+-+.= +.|+.+.... .+-..+....|...+..++.|+.+
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~~t-------~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~ 152 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQKT-------ETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTES 152 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcC
Confidence 777777777777777666555554443332 2333322222 222234455666677778888773
No 257
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.92 E-value=6.7 Score=43.43 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccC-CHHH--H---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEAD--F---LKEK-LKIEEEERKLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~~e~--l---~~e~-~~Le~EE~~L~~eLeelEke~~~l~~el 247 (385)
..++..|+++..-+.+||+.|..-|+.+..+..... +..+ - ...+ ..+.....++...|+.++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456677888888899999999988887765422110 1000 0 0011 1112222223334444444433322222
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 248 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 248 ~~le~e~~~l~~eE---~----~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..++.+...+.... . .+=..++.++.++..++.++..+..++.....+|++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221111 1 133455667777777777777777777777777766
No 258
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=70.81 E-value=1.8e+02 Score=33.78 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcCCCCcCCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 016664 149 ITVLKRAFEIATSQTQVEQPLCLECMRVL-----SDKLDKEVDDVTRDIEAYEA 197 (385)
Q Consensus 149 i~~l~~lFdIlSs~s~IDhPLC~eC~d~L-----le~Ld~qle~~~~E~d~Y~~ 197 (385)
-+++.+.-. ||++-+.=-|+=..|+..= ++.+-+.+++..++.++...
T Consensus 228 q~vl~ev~Q-Lss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns 280 (1265)
T KOG0976|consen 228 QKVLKEVMQ-LSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNS 280 (1265)
T ss_pred HHHHHHHHH-HHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555433 4667777788989997542 23333444444445444443
No 259
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.80 E-value=73 Score=36.30 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC
Q 016664 337 EINAAWGQACLLLHTMCQYFRPKF 360 (385)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~l~F 360 (385)
||-||=|..|=.=-||+. ||-++
T Consensus 734 EiaaAA~KLAECQeTI~s-LGkQL 756 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIAS-LGKQL 756 (769)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Confidence 898998888777777765 44444
No 260
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.78 E-value=29 Score=33.42 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCCcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 152 LKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 152 l~~lFdIlSs~s~IDhPL--C~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
+....+-|.+-..|++-- =+|=|+...+ ++.+++..+.+.+.|...|+
T Consensus 107 ~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 107 FDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444444444433443322 2344555544 55566666666666666655
No 261
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.76 E-value=30 Score=31.91 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
++.+++.+|++++++|.+..+.+++.++++.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444333
No 262
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=70.24 E-value=1.5e+02 Score=31.44 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 243 VNAELKELELKSKRFKELEERYWQEFNNFQF 273 (385)
Q Consensus 243 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 273 (385)
+.+++...+++..+++++|++.|..-|.-++
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888888999999999988777554
No 263
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=69.94 E-value=1.8e+02 Score=32.19 Aligned_cols=62 Identities=26% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELEL-------KSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~-------e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
+.++..+.++++.|.+++.+.+.++..+.. +..+-++...---++|...+.++.++|++.+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~ 481 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEA 481 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777788887777766665554332 22111222223334555555555555554443
No 264
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=69.80 E-value=18 Score=30.32 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 016664 280 EERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkL~ktN 303 (385)
+|..++..++.....+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 555566666666666666666655
No 265
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.73 E-value=76 Score=27.70 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016664 183 KEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~ 203 (385)
.++++.....+.|...+..|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444544444443
No 266
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=69.42 E-value=1.4e+02 Score=30.60 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
+...++.|+.|+..+.++.+..+.-|+..+.+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888887777777766543
No 267
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=69.41 E-value=46 Score=31.04 Aligned_cols=68 Identities=22% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 016664 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd 307 (385)
+.++-++.+++.+.++|.+++.....+.+.=- ..||+.|..|.+-+..++......+.++...++--+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv---------sYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~~ 152 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVV---------SYQLLQHRREMEEMLERLQKLEARLKKLEPIYITPD 152 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 44555566666666666666555444432221 345777888888888888888888888877665443
No 268
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=69.15 E-value=28 Score=34.34 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~ 270 (385)
+.+..++-+..+.+....+..||+|.+.+..++++++.+...+.....+||+..+.
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~ 261 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGA 261 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34444444555677788889999999999999999999999998888888876543
No 269
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.03 E-value=51 Score=28.07 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
+++.++..+.+..-+.+.+.++++....+++.|
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
No 270
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.58 E-value=1.2e+02 Score=29.47 Aligned_cols=38 Identities=11% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCC-----CCcCCcchHHHHHHHHHHHHHHHHHHHH
Q 016664 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTR 190 (385)
Q Consensus 151 ~l~~lFdIlSs~-----s~IDhPLC~eC~d~Lle~Ld~qle~~~~ 190 (385)
.++++++++.++ ..+.-|- .=.+..|..|+.++..+..
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~ 45 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQ 45 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHH
Confidence 345566665432 2234444 4445555555555555443
No 271
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=68.34 E-value=1.3e+02 Score=32.70 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 016664 171 LECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 203 (385)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~-----Y~~fL~~L~ 203 (385)
.|=....+..|..++++++.|... |..|...+.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666543 556655443
No 272
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.30 E-value=41 Score=30.98 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
..++.++...+.+.+.++.|.+.
T Consensus 164 ~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 164 EKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 273
>PLN02678 seryl-tRNA synthetase
Probab=68.29 E-value=59 Score=34.62 Aligned_cols=74 Identities=12% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
...++.++.++-+++..+++.|..++..+.++|..+....+.. +..-.+...+..++..++++++.++.++...
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~----~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA----TELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888899999999999998888887654322111 1122334445555555555555555555433
No 274
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.24 E-value=1.5e+02 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=8.1
Q ss_pred CCeeeeccccCCC
Q 016664 315 GEFGTINNFRLGR 327 (385)
Q Consensus 315 G~fGTINglRLGr 327 (385)
.+|--.||.|.|-
T Consensus 246 ~py~Pf~g~~~~p 258 (309)
T TIGR00570 246 YPYQPLNIETEGP 258 (309)
T ss_pred CCcCCCCCCCCCC
Confidence 4555567777773
No 275
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.11 E-value=2.6e+02 Score=33.31 Aligned_cols=18 Identities=28% Similarity=-0.014 Sum_probs=12.3
Q ss_pred CcchhhHHHHHHHHHHHH
Q 016664 332 PVEWDEINAAWGQACLLL 349 (385)
Q Consensus 332 ~V~W~EINAAwGQ~~LLL 349 (385)
-..=-|+|.+++|...=.
T Consensus 260 i~~~~~~N~~Ls~~L~~~ 277 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQ 277 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345568899998865443
No 276
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.10 E-value=1.8e+02 Score=31.33 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=7.7
Q ss_pred HHHHHHHHhcccc
Q 016664 292 SQAHLELLKRTNV 304 (385)
Q Consensus 292 ~~~qLdkL~ktNV 304 (385)
....+.+||.-|-
T Consensus 408 leqevkrLrq~nr 420 (502)
T KOG0982|consen 408 LEQEVKRLRQPNR 420 (502)
T ss_pred HHHHHHHhccccc
Confidence 3345677776663
No 277
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.99 E-value=1.8e+02 Score=31.39 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCCceeeeecCC
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGE 316 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k-tNV~nd~F~I~hdG~ 316 (385)
+.+..-++.+|+..+.|+..|..--+||+| .+-+=-+||.-|...
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss 391 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS 391 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc
Confidence 445556677788888899999999999975 455556888887654
No 278
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=67.48 E-value=1.4e+02 Score=33.33 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 273 (385)
+|.++++.|..+...++.+|+..+.+....+..-++.|.+..+.+.
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444454444444444444455555555444
No 279
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.39 E-value=2.2e+02 Score=32.21 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 304 (385)
..|++....+.-+...+.-++..+......|.++++-++
T Consensus 587 ~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 587 EQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 333444333333333333344444444445555555444
No 280
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.13 E-value=97 Score=31.36 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 277 AHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+.+.++..+.-.++-|+.-|+.|++
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4445555555555555554444444
No 281
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=67.01 E-value=85 Score=27.98 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=10.4
Q ss_pred HHHHHHHHHhccccCCCceeeeecCCeeeeccccCCC
Q 016664 291 VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (385)
Q Consensus 291 ~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGr 327 (385)
|+..+.+.|- ..+ +.+-+|||| |||.+.
T Consensus 58 y~e~~r~e~~------k~K--s~~l~~G~v-~~R~~~ 85 (149)
T PF07352_consen 58 YAEANRDELT------KKK--SLKLPFGTV-GFRKST 85 (149)
T ss_dssp HHHCTHHHH-------------EE-SS-EE-------
T ss_pred HHHHCHHhcc------cce--EEEcCCeeE-EEEecC
Confidence 6666666665 222 256788998 899885
No 282
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=66.81 E-value=20 Score=38.54 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=9.0
Q ss_pred eeecCCcceeec
Q 016664 366 IIPMGSYPRIMD 377 (385)
Q Consensus 366 LvPmGS~SkI~~ 377 (385)
-||-|||.+-.-
T Consensus 213 YiPsgSf~~avl 224 (475)
T PRK13729 213 YIPSGSFAKAML 224 (475)
T ss_pred eeCCCCeEEEEE
Confidence 689999877544
No 283
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.71 E-value=35 Score=34.56 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.3
Q ss_pred CcCCcchHHHHHHHH
Q 016664 164 QVEQPLCLECMRVLS 178 (385)
Q Consensus 164 ~IDhPLC~eC~d~Ll 178 (385)
.--|++|+.|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 567888888888876
No 284
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.71 E-value=19 Score=37.29 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCC----e-eeecccc-CCCCCCCCcchhhHHHH
Q 016664 273 FQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE----F-GTINNFR-LGRLPKIPVEWDEINAA 341 (385)
Q Consensus 273 ~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~----f-GTINglR-LGrlp~~~V~W~EINAA 341 (385)
.++.++++++.+++.++..+..-++.=...-++..++-|.+... | |+.+-+| ++ |+..+-|..|.-|
T Consensus 273 ~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~~~yly~gs~~~~~~~~--~~~~l~~~~i~~a 345 (406)
T PF02388_consen 273 NKLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDEAYYLYGGSDEEYRKFY--APYLLQWEAIKYA 345 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTEEEEEEEEE-CGCGGCT--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCEEEEEECccchhhHhcC--cchHHHHHHHHHH
Confidence 33444445555555555555555555555567888888877652 2 4555443 22 4445666666444
No 285
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=66.67 E-value=88 Score=30.14 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 256 RFKELEERYWQEFNNFQFQ 274 (385)
Q Consensus 256 ~l~~eE~~~w~e~n~~q~q 274 (385)
+++++-.+.......|-++
T Consensus 95 ~fekekqq~~~~~t~~Lwd 113 (228)
T PRK06800 95 QFQKEQQETAYEWTELLWD 113 (228)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334434444445555554
No 286
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.63 E-value=2.6e+02 Score=33.09 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIE 193 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d 193 (385)
+.|+..+-.+++.+.+|..
T Consensus 403 ~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 403 KTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 287
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=66.54 E-value=78 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
++.....+..+++.++++...+.+++..++..
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543
No 288
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.46 E-value=2.2e+02 Score=31.84 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhch---hcccCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYE---ACLQRLEGE---ARDVLS-EADF-LKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~---~fL~~L~~~---~~~~~~-~e~l-~~e~~~Le~EE~~L~~eLeelEke~~~l~~ 245 (385)
+|+| .|-++++.+..|.-... ..|+-++.+ .-+.++ +.++ .-|+...++-..+|+..|.++|.|+..+.+
T Consensus 294 Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 294 ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 77777777766655543 233322211 011222 2332 234444444444555566666666666655
Q ss_pred HHHHHHHH-------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 016664 246 ELKELELK-------------SKRFKELE-ERYWQEFNNFQFQLIAHQEERD 283 (385)
Q Consensus 246 el~~le~e-------------~~~l~~eE-~~~w~e~n~~q~ql~~~~ee~~ 283 (385)
+..+...+ .+++..-| .+..-++|.++-.|+++|+-..
T Consensus 372 ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 372 EAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55544322 24454444 3778889999999999987543
No 289
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=66.16 E-value=1e+02 Score=27.79 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~ 268 (385)
...|..-|+.||+++..|..+++..+- +|+++-+.|.+-.
T Consensus 53 ~~~l~~llkqLEkeK~~Le~qlk~~e~---rLeQEsKAyhk~n 92 (129)
T PF15372_consen 53 VESLNQLLKQLEKEKRSLENQLKDYEW---RLEQESKAYHKAN 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 356777788999999999999988875 5677776665543
No 290
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=66.09 E-value=1.4e+02 Score=29.36 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.|-......+.....++.+....+..|..+...|+.+.
T Consensus 181 ~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 181 KFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555666666666553
No 291
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=65.95 E-value=84 Score=26.79 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l---~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554433322111 1232322 2223446666777777788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 256 RFKELEERYWQEFNN 270 (385)
Q Consensus 256 ~l~~eE~~~w~e~n~ 270 (385)
.++.+.++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777766555544
No 292
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.61 E-value=2e+02 Score=31.10 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELKSKRF----------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~~~l----------------~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
..+|+++|.++..+.+++..-+...+.| .+--.++-....+..-+.....++...|.-+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665333322222 111112223333344445555566666666655555
Q ss_pred HHHH
Q 016664 294 AHLE 297 (385)
Q Consensus 294 ~qLd 297 (385)
.+|+
T Consensus 424 e~L~ 427 (521)
T KOG1937|consen 424 EALN 427 (521)
T ss_pred HHHh
Confidence 5554
No 293
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=65.54 E-value=1.3e+02 Score=28.91 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 016664 285 ISSKIEVSQAHLELLK 300 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~ 300 (385)
+++|++|.+.-.+.|+
T Consensus 187 v~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 187 LDAELDYHQQSLDVLR 202 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466666665544443
No 294
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.31 E-value=1.2e+02 Score=28.33 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=49.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--------------ccc--CCHHHH----HHHHHHHHH
Q 016664 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--------------RDV--LSEADF----LKEKLKIEE 224 (385)
Q Consensus 165 IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--------------~~~--~~~e~l----~~e~~~Le~ 224 (385)
+.-|- .=.+..|..|+..+..+.........--++++.+. ... ...+++ +.++..++.
T Consensus 21 ~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 21 AEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 44465 55566666666666666554444433333332211 000 012333 233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~ 263 (385)
+-..+.+.+..++.....+...+..++.+...+...-..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~ 137 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREE 137 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666555544433
No 295
>PF13514 AAA_27: AAA domain
Probab=65.31 E-value=2.8e+02 Score=32.57 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888899888877776643
No 296
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.19 E-value=56 Score=34.26 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
..++.++-++-+++..+++.|.+++.++.+++..+....+..+ ..-.+...++.++.+++++...++.++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~----~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAE----ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777888888888888888888888876443221111 12223334444455555555555444444
No 297
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=65.17 E-value=16 Score=39.76 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~-~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~ 282 (385)
.+|-+.++.+-....+|+++|+ .+-.-....+..|++.|++|..++.. -.+.+++
T Consensus 518 reLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d-p~y~eeK 573 (604)
T KOG4796|consen 518 RELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD-PNYMEEK 573 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC-ccHHHHH
Confidence 3455556666666666666666 44444456688999999999999843 4444443
No 298
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.10 E-value=2.5e+02 Score=31.93 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 265 w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
|.+.-.+......+++++++|.+..+..+..+..|.
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888999998888887776665553
No 299
>PLN02372 violaxanthin de-epoxidase
Probab=64.95 E-value=93 Score=33.17 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 249 ELELKSKRFKELEERYWQEFNNF 271 (385)
Q Consensus 249 ~le~e~~~l~~eE~~~w~e~n~~ 271 (385)
.+....++|++.|..|.++.++-
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lske 429 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKE 429 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Confidence 34444455555555555544433
No 300
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=64.79 E-value=97 Score=27.10 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
++..++.+...+..++..+..+.......+...+ ...+.++..|=++.+.++..+.++..+..-|-.|++.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445555555444444444433333 2334555556666666666666666666666666653
No 301
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=64.58 E-value=1.6e+02 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+|.+=+++....+..|+++...+++.|.....+..-|
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556667777777777777777666655443
No 302
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.26 E-value=2.3e+02 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
+...+-.+++.++..+.+.+..+|.
T Consensus 117 ~qk~eR~~ef~el~~qie~l~~~l~ 141 (660)
T KOG4302|consen 117 KQKDERRAEFKELYHQIEKLCEELG 141 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344445555555555554444
No 303
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.06 E-value=2.7e+02 Score=31.92 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
++-+.+...+...+..+......+...+.
T Consensus 167 ~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 167 EKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555
No 304
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=63.97 E-value=75 Score=25.51 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l---~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
+.....++..+...+..|..-+.... . ..+...+ ..-+..|+.....+..++..++++.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555533333222 1 1122222 233445677777788888888888888888888877777
Q ss_pred HHHHHHHHHHHHH
Q 016664 255 KRFKELEERYWQE 267 (385)
Q Consensus 255 ~~l~~eE~~~w~e 267 (385)
+.++.+.++--..
T Consensus 90 k~~e~L~e~~~~~ 102 (123)
T PF02050_consen 90 KKLEKLKERRREE 102 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666643333
No 305
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=63.80 E-value=1.4e+02 Score=31.48 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
|...++.|+++..|++.|.++++..+...+-++++-
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEm 275 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEM 275 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666665555555444433
No 306
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.47 E-value=72 Score=33.12 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 016664 126 HIPPPEGGTNGPMQPNNS 143 (385)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~ 143 (385)
+.|...++..++..+|..
T Consensus 185 ~~~~~~~d~~~~yp~n~~ 202 (365)
T KOG2391|consen 185 ALPYMTDDNAEPYPPNAS 202 (365)
T ss_pred cCcccCCCCCCcCCCCcc
Confidence 344444444444454544
No 307
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.38 E-value=1.4e+02 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.|..+..+|.+.+..+.++..-+++||+.|.
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544
No 308
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=63.23 E-value=1.4e+02 Score=28.33 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 173 CMRVLSDKLDKEVDDVTRDIEAYE 196 (385)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~Y~ 196 (385)
=.+.++..|...+..+........
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~ 51 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTI 51 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777766666555444443
No 309
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=62.93 E-value=94 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=17.4
Q ss_pred ccchHHHHHHHHHhhcCCCCc-CCcchHH
Q 016664 145 FHSTITVLKRAFEIATSQTQV-EQPLCLE 172 (385)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~I-DhPLC~e 172 (385)
++.-+.+|.+=|.||-.+.+- ..|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 444567778888888655332 3566765
No 310
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.87 E-value=92 Score=26.15 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhchhc--------------ccCCHHH-HHHHHHH-HHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEAR--------------DVLSEAD-FLKEKLK-IEEEERKLEAAIEETE 237 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~f--L~~L~~~~~--------------~~~~~e~-l~~e~~~-Le~EE~~L~~eLeelE 237 (385)
.|-+....+|+..-+|++....+ |++|-.+.. +.++.++ +..-+.. ++.+...|...|.+++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888877643 444422210 1123333 3332222 5677778889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 238 KQNAEVNAELKELEL 252 (385)
Q Consensus 238 ke~~~l~~el~~le~ 252 (385)
++...+.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999888888877654
No 311
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=62.77 E-value=1.9e+02 Score=29.85 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 274 ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+...+.+-...|..++..++..+..|.+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555666666655555544
No 312
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=62.76 E-value=2.5e+02 Score=31.04 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEA 197 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~ 197 (385)
.+=+.++.=++..++|..++..
T Consensus 285 ~I~e~ie~lYd~lE~EveA~~~ 306 (570)
T COG4477 285 LIQEKIESLYDLLEREVEAKNV 306 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777777653
No 313
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=62.64 E-value=52 Score=31.47 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 016664 283 DAISSKIEVSQAHLELLK 300 (385)
Q Consensus 283 ~sl~~q~~~~~~qLdkL~ 300 (385)
....+++..++.+|+.++
T Consensus 112 ~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 112 EAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 314
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.56 E-value=1.8e+02 Score=29.53 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAE 242 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~ 242 (385)
.+|.++.+.|.+|++++..
T Consensus 131 e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 131 EEERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 315
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.48 E-value=1.6e+02 Score=28.69 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.7
Q ss_pred eccccCCCCCCCCcchhh
Q 016664 320 INNFRLGRLPKIPVEWDE 337 (385)
Q Consensus 320 INglRLGrlp~~~V~W~E 337 (385)
|+...-|.-|..||++.|
T Consensus 244 v~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 244 AESKGTGKERPGPVGFEE 261 (261)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 777778888888887653
No 316
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.46 E-value=1e+02 Score=33.46 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.7
Q ss_pred cccCCCCcccceEEE
Q 016664 99 ASQSGKAMDESFVVI 113 (385)
Q Consensus 99 ~~~~~~~~~eSfV~l 113 (385)
+..+++.-.+.||.+
T Consensus 182 t~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 182 TRNPSRTDDEGFVTL 196 (508)
T ss_pred cCCCCccCCCCeeee
Confidence 455666666777775
No 317
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.43 E-value=71 Score=30.60 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAE----VNAELKELELKSKRF-KELEERYWQ----------EFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~----l~~el~~le~e~~~l-~~eE~~~w~----------e~n~~q~ql~~~~ee~~s 284 (385)
..|+.|.++|+.+|..++++-.. -.....-++.|.+.| +-.++++-. ......-++...+++.+.
T Consensus 99 vrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~ 178 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDG 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44666666666666666655543 111112222222222 222222222 234566677777777777
Q ss_pred HHHHHHHHHHHHHHHh
Q 016664 285 ISSKIEVSQAHLELLK 300 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~ 300 (385)
|+..+..=+..|+.|+
T Consensus 179 Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 179 LESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777777775
No 318
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=62.39 E-value=82 Score=25.45 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~--~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+-...++.+.+.++.+.-..|...|..+..+..++.+.+.- .+..-- +...|..+..+..++...+...+..+++|+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344555555566555555555555555555444442221 122222 445555666666666666666666676665
No 319
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.38 E-value=1.5e+02 Score=28.58 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 237 Eke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
|....++..++.-+....+.|...++.|....-.+.-++..+.+.+.....+-+++...+.+|.+
T Consensus 108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 33444444444444444445555555555555555555555555555555555555555555544
No 320
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.33 E-value=74 Score=35.44 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhc-c-cC--CHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEAR-D-VL--SEADFLK---EKLKIEEE-ERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~-~-~~--~~e~l~~---e~~~Le~E-E~~L~~eLeelEke~~~l~~el~~l 250 (385)
..|.++|+++.+-|-...--|+++..... . .+ ......+ +-.++.++ -.+|.+|++.+++-.++++.....|
T Consensus 462 ~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL 541 (852)
T KOG4787|consen 462 ISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVL 541 (852)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHH
Confidence 34666777777777766666666543211 1 01 1111111 11112222 2257777777777666666665555
Q ss_pred HH
Q 016664 251 EL 252 (385)
Q Consensus 251 e~ 252 (385)
-.
T Consensus 542 ~~ 543 (852)
T KOG4787|consen 542 AA 543 (852)
T ss_pred HH
Confidence 43
No 321
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=62.28 E-value=91 Score=25.92 Aligned_cols=16 Identities=25% Similarity=0.096 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016664 272 QFQLIAHQEERDAISS 287 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~ 287 (385)
+-+....++.+.++.-
T Consensus 59 k~E~~~WqerLr~LLG 74 (79)
T PRK15422 59 KEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 322
>PF15294 Leu_zip: Leucine zipper
Probab=62.26 E-value=1.8e+02 Score=29.34 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAE-------VNAELKELELK-------------SKRFKELEERYWQEFNNFQFQ 274 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~-------l~~el~~le~e-------------~~~l~~eE~~~w~e~n~~q~q 274 (385)
+.+|..+|.+|-.+|...|..+|++.-. +.++|.+++.. ...+.++|...-.--+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 4567777888888888887777765444 44444444431 112334455554444555554
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVS 292 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~ 292 (385)
+........+++..+..+
T Consensus 210 ~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 323
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=61.89 E-value=32 Score=34.83 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~ 264 (385)
..|-+.|.-|++.||+..++|..+..+++.|+..|++.-.++
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777888888888888888777777776666554433
No 324
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.62 E-value=2.7e+02 Score=31.09 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 270 NFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 270 ~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
+|+.+++..-++.+++.+-++-+....+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666555544444
No 325
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.56 E-value=2.1e+02 Score=30.70 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcC
Q 016664 343 GQACLLLHTMCQYFR 357 (385)
Q Consensus 343 GQ~~LLL~tla~kl~ 357 (385)
|..+=|..+|+..+|
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 444556666766644
No 326
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.52 E-value=79 Score=24.93 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
+.+.+..++...+++...+..+|+..+..+.++..+......++.--
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666666655554444333
No 327
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=61.48 E-value=1.7e+02 Score=28.86 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 016664 171 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 201 (385)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 201 (385)
.++--..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 455556666666666554 11 22345667664
No 328
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.48 E-value=1.5e+02 Score=33.34 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=9.5
Q ss_pred HHHHhh-cCCCCcCCcchHH
Q 016664 154 RAFEIA-TSQTQVEQPLCLE 172 (385)
Q Consensus 154 ~lFdIl-Ss~s~IDhPLC~e 172 (385)
+|-+-+ |.-+.++++-|-+
T Consensus 86 ~i~eWles~~p~~~~~s~~~ 105 (861)
T KOG1899|consen 86 RIAEWLESPSPSMSTVSCPE 105 (861)
T ss_pred HHHHHHhccCCCCCCccCCc
Confidence 444444 3344566666644
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=61.19 E-value=59 Score=35.62 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~ 252 (385)
++++.+|++.+++++++.+++.
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~ 584 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEE 584 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 330
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=61.16 E-value=1.3e+02 Score=33.69 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+..+|+++-++|..+|..+.++......++...+.+.++.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777777777766666555444
No 331
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=61.15 E-value=27 Score=36.03 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.6
Q ss_pred eccccCCCCCCC
Q 016664 320 INNFRLGRLPKI 331 (385)
Q Consensus 320 INglRLGrlp~~ 331 (385)
=|++|+=.+|..
T Consensus 190 RnNiRIiGiPEg 201 (370)
T PF02994_consen 190 RNNIRIIGIPEG 201 (370)
T ss_dssp TTEEEEES----
T ss_pred CCceeEEecCCC
Confidence 356666446654
No 332
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.03 E-value=1.1e+02 Score=26.28 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc---------------------------------ccCCHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------------------------DVLSEADFLKEKLK 221 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~---------------------------------~~~~~e~l~~e~~~ 221 (385)
...++.+.+++..+...+..|...++.|+.-.. ...-+.++.+...-
T Consensus 12 ~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~ 91 (129)
T cd00584 12 QQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEF 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
++...+.|.+.+++++++...+.+++..++....++
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 333
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=60.73 E-value=50 Score=36.91 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
|+.+|+.|++|+++ |+. ......++..+..-++.+.++..+..++||+.-+.+....+..
T Consensus 2 LRdkL~~Lq~ek~~---E~~---~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---ERQ---ALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666542 222 2223344445556677888999999999999988877665543
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.69 E-value=56 Score=35.75 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el 247 (385)
+++++|+++|++.+++++++
T Consensus 567 ~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443
No 335
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=60.67 E-value=1.8e+02 Score=32.17 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
++.+.+.|.+++..++... ....+.. +.. -+. +.....+..+++++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~~~------v~~-------l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-EKQ------VNS-------LMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-hHH------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888887764322 2222211 000 112 22333444445555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016664 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (385)
Q Consensus 254 ~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 304 (385)
...++.+-...-.+. .....+.++++.|..++.....+|+.|+..++
T Consensus 67 i~~IE~qn~~Lqvq~----~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGLQVQS----ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCchhhHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 433333332221111 12334567777777888888888998887655
No 336
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=60.59 E-value=1.8e+02 Score=28.90 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
.|..+++...++|.++|+-+..+..+|+.-+..+|.+
T Consensus 120 ~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 120 NEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444444444444443
No 337
>PF13166 AAA_13: AAA domain
Probab=60.57 E-value=2.6e+02 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.2
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 016664 326 GRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (385)
Q Consensus 326 Grlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (385)
|..|....+.-|=| ++-|+++|+.-
T Consensus 494 ~~~~~~~LSEGEk~-----~iAf~yFla~l 518 (712)
T PF13166_consen 494 GSKPAKILSEGEKR-----AIAFAYFLAEL 518 (712)
T ss_pred CCcccCccCHHHHH-----HHHHHHHHHHH
Confidence 45566777888875 45566666653
No 338
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.31 E-value=3e+02 Score=31.25 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 246 el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
...++......|...-+.+-..+..++.+..+...+++...-+..+++..+++|++.
T Consensus 560 ~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 560 KAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444455667777788888888888877777777888888887764
No 339
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=60.14 E-value=32 Score=32.82 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~ 277 (385)
+......++++...++.+|..++. +++..|++||+.|..++.-+..
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667666664 5678888999999888765443
No 340
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=60.12 E-value=2.1e+02 Score=29.35 Aligned_cols=24 Identities=4% Similarity=0.119 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 274 QLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 274 ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
++..++.+.+..+..|+.....++
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455554444433
No 341
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=60.10 E-value=3.7e+02 Score=32.18 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCce
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F 309 (385)
..|.+..+.....+..+.+...+...+.|++.|+-+.+|...+
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L 322 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEAL 322 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3344444444445555555555556667788888777776665
No 342
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.01 E-value=96 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (385)
Q Consensus 234 eelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~ 268 (385)
..|.+|...+....+.|+.+..+++ .|..-|+++
T Consensus 35 n~l~~e~q~~q~~reaL~~eneqlk-~e~~~WQer 68 (79)
T COG3074 35 NSLSQEVQNAQHQREALERENEQLK-EEQNGWQER 68 (79)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3334444444444555555555554 334556543
No 343
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.62 E-value=99 Score=25.70 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYE 196 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~ 196 (385)
++.+...+..+.+.-.
T Consensus 34 ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 34 LDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 344
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.42 E-value=2.1e+02 Score=29.09 Aligned_cols=29 Identities=7% Similarity=0.294 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
.+...+.-.+.+..++...+..++..+..
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 345
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=59.39 E-value=2.1e+02 Score=29.15 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
.+-..+-.++.+|-.+-.+.-.+|..+-.+...+...=..|..++-.+....-++.++.+.+.+.|.-...
T Consensus 172 ~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 172 KKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444434444444444445555555555555555555555554443333
No 346
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=59.39 E-value=1.3e+02 Score=26.81 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016664 230 EAAIEETEKQN 240 (385)
Q Consensus 230 ~~eLeelEke~ 240 (385)
.++|.++..-.
T Consensus 58 ~~~L~~~~~~~ 68 (126)
T PF09403_consen 58 EAELAELKELY 68 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 347
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=59.38 E-value=61 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.587 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
++.+..++..++..++.|....+.|+
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~ 30 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLE 30 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999987766654
No 348
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=59.18 E-value=3.3e+02 Score=31.30 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
..+..++-++..-+.|+..+..+...+....
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444444444444444444443333
No 349
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.97 E-value=34 Score=29.27 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
+++++...+.+++++++.+.+.|..++..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555566666666655555555544
No 350
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=58.81 E-value=3.6e+02 Score=31.65 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
..+.+.+..+......+.+....-+.
T Consensus 183 ~~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 183 GQISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666677666666666655555553
No 351
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.74 E-value=3.8e+02 Score=31.96 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
.+.+.+..+..-+.+++.....+...+...-..+.....+-.+..+++..+..|+
T Consensus 420 r~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 420 RLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333334333333334444444333333
No 352
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.72 E-value=1e+02 Score=30.72 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 183 KEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~ 200 (385)
.+|+-+.-|-+.-.+-|+
T Consensus 59 ~RL~HLS~EEK~~RrKLK 76 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLK 76 (292)
T ss_pred HhhcccCHHHHHHHHHHH
Confidence 334444444444443333
No 353
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.34 E-value=1e+02 Score=32.23 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
..++..+-++-+++..+++.|..++..+.++|..+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777788888888888888888888887643
No 354
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=58.18 E-value=1.8e+02 Score=28.00 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCC
Q 016664 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGE 316 (385)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~ 316 (385)
.++++..+..+++..+.++..|.+.-= -.+.+|....+
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~-~sti~i~l~~~ 204 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD-YSTITISLYEP 204 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-eEEEEEEEEec
Confidence 334444444444444444444443221 24555655544
No 355
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=58.11 E-value=1.3e+02 Score=26.27 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
..+...+..+.+++..+..+++..+..+.+|
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 356
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=58.09 E-value=99 Score=27.59 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
.++++++++.+.-...+.....+....+.-|.. +.++--+..+.+-+..|+..+..-+..++.
T Consensus 56 ~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk-~eYk~llk~y~~~~~~L~k~I~~~e~iI~~ 118 (126)
T PF09403_consen 56 AAEAELAELKELYAEIEEKIEKLKQDSKVRWYK-DEYKELLKKYKDLLNKLDKEIAEQEQIIDN 118 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444422221 334433444444444444444444444443
No 357
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=58.00 E-value=1.8e+02 Score=27.92 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 281 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee 281 (385)
+...++|...|.-...+..++.........|...|+.+-..+-...+.++.++..++.+
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888888888888888888888777766666666666665555433
No 358
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=57.95 E-value=2.3e+02 Score=29.14 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCC
Q 016664 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (385)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGr 327 (385)
.++..+++++..++.++..++..--++..-.=-+||....++ ++.|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~ 273 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQ 273 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCC
Confidence 345566677777777777666543222333333566555554 35554
No 359
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.91 E-value=2.2e+02 Score=29.06 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 210 ~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
++.|.++.=+++-|--.+-|...|++.+..+.+-+.||.+|+.++.+..+.=-+===.+=+-|+-|.+...|.++|+.-+
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 016664 290 EVSQAHL 296 (385)
Q Consensus 290 ~~~~~qL 296 (385)
+...+.|
T Consensus 134 eTmrssL 140 (305)
T PF15290_consen 134 ETMRSSL 140 (305)
T ss_pred HHHHhhh
No 360
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=57.75 E-value=77 Score=34.76 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHhccccCCCceeeeecCCeeeeccccCCCCCCCCcch
Q 016664 262 ERYWQEFNNFQFQLIAHQEERDAISS---KIE---VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 335 (385)
Q Consensus 262 ~~~w~e~n~~q~ql~~~~ee~~sl~~---q~~---~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W 335 (385)
+-++..|+.+++.|..|......+.+ |+. ...++| +||.|.+|-.|++=+ ||..=---....+=
T Consensus 71 q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~L--~~r~n~lN~p~~vl~--------n~~vfFnKkrEaek 140 (574)
T PF07462_consen 71 QVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNKL--ERRQNLLNNPTSVLK--------NFTVFFNKKREAEK 140 (574)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCcHHHHH--------HHHHHHhhhhHHHH
Confidence 44677788888888888777654432 222 122233 578999998887633 32211011124567
Q ss_pred hhHHHHHHHHHHHHHH
Q 016664 336 DEINAAWGQACLLLHT 351 (385)
Q Consensus 336 ~EINAAwGQ~~LLL~t 351 (385)
.||--++--+=.||-.
T Consensus 141 ~eveNtlkNt~iLlky 156 (574)
T PF07462_consen 141 KEVENTLKNTEILLKY 156 (574)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 7888888888666654
No 361
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.38 E-value=2.4e+02 Score=29.23 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
.+...|+.+++-..-++.+++.+-.+.......=.+.-..|+...-...+...++..|..+++..+.+++
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666667666666555444444444455555555555566666666666666666555
No 362
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.74 E-value=2.6e+02 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 016664 338 INAAWGQACLLLHTMCQYFRP 358 (385)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~l 358 (385)
||--+--+.+||.+++.-+++
T Consensus 344 inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 455555556666666665544
No 363
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=56.61 E-value=1.4e+02 Score=26.92 Aligned_cols=74 Identities=27% Similarity=0.371 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcc--cCC--H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--E-ADF-----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~--~~~--~-e~l-----~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
..++..++....+++........+.--..+ .+. - +-| .+-...||+-.+.+.++|+.+|.+.+.+.++|.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777666655421111 000 0 001 122234677777888888888888888888888
Q ss_pred HHHH
Q 016664 249 ELEL 252 (385)
Q Consensus 249 ~le~ 252 (385)
+|+.
T Consensus 113 ~LK~ 116 (131)
T KOG1760|consen 113 ELKK 116 (131)
T ss_pred HHHH
Confidence 7765
No 364
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=56.51 E-value=1.9e+02 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
.+=.+.-.++..|...+-...|++.+++.-....+-|
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555444443333
No 365
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.41 E-value=53 Score=25.51 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
+||.+..++...+..+++|.+++..+++.++.-.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667776666666666665443
No 366
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=56.15 E-value=1.8e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (385)
Q Consensus 245 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qL 296 (385)
.....++.+...+...-.++-..+..++.++.++...+..+.++...++.+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~ 150 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRL 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445556666667777777777777777776666543
No 367
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.97 E-value=98 Score=35.64 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..+.++++......+...|.++..+.+.+.+.+.+.--+.-.++-+...+..+..+++.|+.....||..
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555656666666667777777777777666666666666666666666666677776666666653
No 368
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.86 E-value=41 Score=25.93 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
+..+...|.++++++.++.+++.++++.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555554444
No 369
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=55.81 E-value=50 Score=29.87 Aligned_cols=29 Identities=24% Similarity=0.506 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
||.+...|.++++.|..|.+++..|+..+
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~ 107 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAY 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 370
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.67 E-value=1.2e+02 Score=25.29 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
.++..++.+++....-+.....+ -..+...+.+++.|..+..++.-++++....+..++..|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~------~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKE------LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555544444444333221 11223334456666666666666666666666666655554
No 371
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=2.8e+02 Score=30.76 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~ 252 (385)
..++|+.-++++..|.+-+..++.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 372
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=55.58 E-value=4.6e+02 Score=31.92 Aligned_cols=14 Identities=7% Similarity=-0.192 Sum_probs=6.4
Q ss_pred hccccCCCceeeee
Q 016664 300 KRTNVLNDAFPIWH 313 (385)
Q Consensus 300 ~ktNV~nd~F~I~h 313 (385)
...|=++..||+..
T Consensus 941 ~~ine~~s~l~~~~ 954 (1294)
T KOG0962|consen 941 NDINEKVSLLHQIY 954 (1294)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444445555443
No 373
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=55.54 E-value=8.5 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.080 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhccccCCCceeee
Q 016664 288 KIEVSQAHLELLKRTNVLNDAFPIW 312 (385)
Q Consensus 288 q~~~~~~qLdkL~ktNV~nd~F~I~ 312 (385)
+++..+..|.+.-+.|+|-..+.|.
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~Ie 178 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEIE 178 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S----
T ss_pred hHHHHHHHHHHhccCCeEEEEEeee
Confidence 4556667788888999887766543
No 374
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.49 E-value=3.6e+02 Score=30.65 Aligned_cols=36 Identities=28% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----cccCCCce---eeeecCC
Q 016664 281 ERDAISSKIEVSQAHLELLKR----TNVLNDAF---PIWHDGE 316 (385)
Q Consensus 281 e~~sl~~q~~~~~~qLdkL~k----tNV~nd~F---~I~hdG~ 316 (385)
-+.+.++++...++.+++|+. .-.+|..| .|..++.
T Consensus 553 ~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~ 595 (716)
T KOG4593|consen 553 ARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSL 595 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhh
Confidence 344556777778888887776 34556555 4665554
No 375
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=55.12 E-value=1.1e+02 Score=33.44 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (385)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~ 241 (385)
-|+..|-+.=..|+..+.+..+.|..-.+++..+. ..+..++.+-+.+...|+-.|+...++..
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~------~~~~~~L~Ka~tk~~~ldvklkha~~~vd 80 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAEL------GKYKDLLAKAETKRSALDVKLKHARNQVD 80 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 46666666656666666666666665555544321 12233334444444445555554444443
No 376
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=55.10 E-value=1.4e+02 Score=29.98 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 274 QLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 274 ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
++...+.++..++++++.++.+|+.+
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~ 184 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYT 184 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555566667777777776543
No 377
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=1.5e+02 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~ 205 (385)
++..-..+..+++++..|..-.++|+.+
T Consensus 7 mee~~~kyq~LQk~l~k~~~~rqkle~q 34 (120)
T KOG3478|consen 7 MEEEANKYQNLQKELEKYVESRQKLETQ 34 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999888888754
No 378
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=55.07 E-value=1.8e+02 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 016664 185 VDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 185 le~~~~E~d~Y~~fL~~L~ 203 (385)
++...+=++.|.+-+..|+
T Consensus 107 lq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555544
No 379
>PRK11281 hypothetical protein; Provisional
Probab=54.81 E-value=85 Score=37.23 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
++.|.+|.+...++-++..+.+.++
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ 162 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQ 162 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3333334444333333333333333
No 380
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.48 E-value=71 Score=33.08 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 016664 189 TRDIEAYEACLQRLE 203 (385)
Q Consensus 189 ~~E~d~Y~~fL~~L~ 203 (385)
.+..+.|+.+++.+.
T Consensus 214 ~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 214 IRSLEYFENLYDAFG 228 (406)
T ss_dssp ---HHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHhcC
Confidence 456677888888773
No 381
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=54.21 E-value=38 Score=28.40 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 182 DKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (385)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~ 245 (385)
-+|++.+++....|..-|+.++..-. ..+++++ ...+|+|...+...+...|+++..|..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~----R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEA----RRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHH----HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 46777788777777777776654321 1223222 223455555555555555555544443
No 382
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=53.50 E-value=1.4e+02 Score=25.29 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
+++......+..++..|...-..|+......+.=+.+.+.+..+-...-++=-+.......++..+..++..+...+...
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccccC
Q 016664 293 QAHLELLKRTNVL 305 (385)
Q Consensus 293 ~~qLdkL~ktNV~ 305 (385)
...|..++...-|
T Consensus 101 e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 101 EEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHH
No 383
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=53.50 E-value=2.1e+02 Score=30.98 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcee
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~ 310 (385)
+.-...+-|+..+.++..+..+........++.++..|=|-.+|-
T Consensus 348 ~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~ 392 (554)
T KOG4677|consen 348 HLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFS 392 (554)
T ss_pred hHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhh
Confidence 334556777778888888888887777788888887777766663
No 384
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=53.28 E-value=53 Score=24.41 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
...+..|..++..|+.+...|..++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777777777777777666654
No 385
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.14 E-value=1.5e+02 Score=25.71 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 277 AHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLdk 298 (385)
.++.+...+..++.-.+.+|..
T Consensus 89 ~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 89 TLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 386
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=53.00 E-value=1.3e+02 Score=24.94 Aligned_cols=61 Identities=28% Similarity=0.370 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
-+.++++.|...+.-++.+..-.. ..+ ..++..+-.++..+..+|..+++++..+-..+..
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l~-~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~ 69 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREALI-SGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLGA 69 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677777776665432111 111 2244456667777888888888888776665543
No 387
>PLN02320 seryl-tRNA synthetase
Probab=52.98 E-value=1.2e+02 Score=32.97 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
.++..+-++-+++..++++|..++..+.+++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666777777777777777777654
No 388
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=52.42 E-value=2.5e+02 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL~ktN 303 (385)
|..+.+.++.|..+.-....++++++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44555555556555555666666666643
No 389
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.15 E-value=2.6e+02 Score=32.43 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~ 276 (385)
++...+++.-+++.+.+...++..|.++++++...+..+-.+.-++++.++.||.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444455555555555555555555556655555555444455555555555544
No 390
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=51.83 E-value=77 Score=34.71 Aligned_cols=35 Identities=43% Similarity=0.595 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.+-.++.+++.++.++++++++++++++.+.+++
T Consensus 92 ~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l 126 (646)
T PRK05771 92 EEELEKIEKEIKELEEEISELENEIKELEQEIERL 126 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555444333
No 391
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=51.79 E-value=2.1e+02 Score=33.40 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL--EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e--E~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
|...|+..++.+..+..++.+++..+..+...++.- =...-+.+..++.++.+.-.+--|+..-......+|..+++.
T Consensus 775 E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~ 854 (984)
T COG4717 775 ELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKER 854 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444455544444444444333210 001224445555555555555556655555666666666553
Q ss_pred ---ccC---CCceeeeecCCeeeec
Q 016664 303 ---NVL---NDAFPIWHDGEFGTIN 321 (385)
Q Consensus 303 ---NV~---nd~F~I~hdG~fGTIN 321 (385)
-|+ .++|.==.||.|.+|+
T Consensus 855 rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 855 RLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hchHHHHHHHHHHhhccCCceeeee
Confidence 222 3445333789998886
No 392
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.65 E-value=1.8e+02 Score=26.00 Aligned_cols=41 Identities=7% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 260 eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.-+..-.+.+..+.++..+..+.+++.....-....|+.|.
T Consensus 83 i~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 83 ISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455566666777777777777766666666666654
No 393
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=51.52 E-value=4.6e+02 Score=30.74 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=25.9
Q ss_pred eeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhhc
Q 016664 317 FGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (385)
Q Consensus 317 fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (385)
=||.-.+|.-+ .+..-.-.|+--.|--+.+....+.+.+
T Consensus 810 g~~~a~lr~~~-~slk~~l~e~ar~Wasl~~~~~vl~e~l 848 (984)
T COG4717 810 GGTVAELRQRR-ESLKEDLEEKARKWASLRLAVQVLEEAL 848 (984)
T ss_pred CChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666543 2234566778888888888888887765
No 394
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.41 E-value=2.8e+02 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (385)
....++.++++++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777777777777765553
No 395
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.40 E-value=1.8e+02 Score=31.01 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
...++.+|..+-+++..++++|..++.++.++|.....+... .-.....+.+.+.-++.....+.+.++++++...
T Consensus 27 ~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l- 102 (429)
T COG0172 27 DVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL- 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 345566788888899999999999998888888743332111 1123445555565555555555555544443322
Q ss_pred HHHHHhccccCCCceeeeecC
Q 016664 295 HLELLKRTNVLNDAFPIWHDG 315 (385)
Q Consensus 295 qLdkL~ktNV~nd~F~I~hdG 315 (385)
|.--||-.+.=.++-|+
T Consensus 103 ----l~ipNi~~~~VPvg~de 119 (429)
T COG0172 103 ----LTIPNIPHESVPVGKDE 119 (429)
T ss_pred ----HhCCCCCccccCcCCCc
Confidence 34457766666665443
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=51.37 E-value=3.5e+02 Score=29.37 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=14.3
Q ss_pred HHHHhccccCCCceeeee
Q 016664 296 LELLKRTNVLNDAFPIWH 313 (385)
Q Consensus 296 LdkL~ktNV~nd~F~I~h 313 (385)
...|+..+.=+..|+|..
T Consensus 380 ~~~L~~L~m~~a~f~v~~ 397 (553)
T PRK10869 380 TESMHELSMPHGKFTIDV 397 (553)
T ss_pred HHHHHHcCCCCcEEEEEE
Confidence 455778888899999885
No 397
>PRK12765 flagellar capping protein; Provisional
Probab=51.14 E-value=79 Score=34.78 Aligned_cols=55 Identities=5% Similarity=0.090 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 234 eelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
+-+.++.+.|+.+++.++ .+++..+++|++.|+.+..-+..+......|..++..
T Consensus 535 ~~l~~~~~~l~~~~~~~~---~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~ 589 (595)
T PRK12765 535 ESLTNEIKSLTTSKESTQ---ELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINA 589 (595)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555544444 4678888899999999988777777666666665544
No 398
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=51.14 E-value=1.7e+02 Score=25.57 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ 273 (385)
..|..........+..++.+.+.....+.+...+.+.++.+-++...+|...+.
T Consensus 74 ~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 74 QQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666777778888888888888888888888888888877777765543
No 399
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.02 E-value=3.5e+02 Score=29.13 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 016664 149 ITVLKRAFEIA 159 (385)
Q Consensus 149 i~~l~~lFdIl 159 (385)
+.-+..+|+-+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455666544
No 400
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.85 E-value=4.6e+02 Score=31.33 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=18.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 016664 167 QPLCLECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 202 (385)
Q Consensus 167 hPLC~eC~d~Lle~Ld~qle~~~~E~d-----~Y~~fL~~L 202 (385)
.|--.+|.. -++........+++... .|..|..++
T Consensus 724 ~p~i~~i~r-~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 724 GPEISEIKR-KLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 454454444 55556666655554433 366666554
No 401
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=50.84 E-value=5e+02 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=16.2
Q ss_pred HHHHHhccccCCCceeeeecCCee
Q 016664 295 HLELLKRTNVLNDAFPIWHDGEFG 318 (385)
Q Consensus 295 qLdkL~ktNV~nd~F~I~hdG~fG 318 (385)
-...|+..+-.|..|..-++..+|
T Consensus 946 ~~s~l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 946 KVSLLHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHhhhhhc
Confidence 345566666677788777777766
No 402
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.74 E-value=5.1 Score=44.31 Aligned_cols=100 Identities=24% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL--------------KIEEEERKLEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~--------------~Le~EE~~L~~eLeelEke~~~l~~e 246 (385)
++-+...++.|+..|..+++..-.. ..+.+++...+. .+..+.+.+...+.+|+.++..+..+
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~~~~---~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~ 386 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDIGLE---FDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKE 386 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777766643210 112233322222 23444444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 247 l~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
+..++.....++ .....++++..-...|++.+.+++.
T Consensus 387 ~~~l~~~~~~~~-------~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 387 IEELEASLEALK-------KLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444333222 1222344444445555555544443
No 403
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=50.71 E-value=62 Score=25.10 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAE 242 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~ 242 (385)
|..+|.++++.++++.+.
T Consensus 5 E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 404
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=50.48 E-value=1.8e+02 Score=28.05 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
+.++...|+...+.|.+++..++.+...++++...+.++
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~e 74 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLAD 74 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444333
No 405
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=50.37 E-value=1.5e+02 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+|+...+|..++....++.-.+......+..+...|
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444444444444443333
No 406
>PRK10698 phage shock protein PspA; Provisional
Probab=50.33 E-value=2.4e+02 Score=27.07 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 249 ELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (385)
Q Consensus 249 ~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 295 (385)
.++.+.......-.++-.....++..+.+...++..|.+++..+..+
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344445555666666677777777777766654
No 407
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=50.32 E-value=3.1e+02 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 016664 172 ECMRVLSDKLDKEVDDVTRDIEAYE--ACLQRLE 203 (385)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~--~fL~~L~ 203 (385)
.|...--+.|+.+|+.+.++.+.+- .|+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 4777788999999999999888742 4444444
No 408
>smart00338 BRLZ basic region leucin zipper.
Probab=49.79 E-value=72 Score=24.35 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
.|+.++..|+.+...|..++..++.+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 409
>PRK10869 recombination and repair protein; Provisional
Probab=49.72 E-value=3.8e+02 Score=29.18 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 016664 149 ITVLKRAF 156 (385)
Q Consensus 149 i~~l~~lF 156 (385)
++.+..++
T Consensus 114 ~~~l~~l~ 121 (553)
T PRK10869 114 LSQLRELG 121 (553)
T ss_pred HHHHHHHH
Confidence 33333333
No 410
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=49.37 E-value=5.7e+02 Score=31.18 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 152 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 152 l~~lFdIlSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
....|+.++...-+-+--=.+=-.....-+......+...+..|...|++|..
T Consensus 676 ~~~~~~~~~r~~~~tp~~~l~~i~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~ 728 (1395)
T KOG3595|consen 676 FASYFDRLSRHNYVTPTSYLEFIGTFKKLLKEKRSEVRLRKLRLELGLDKLKE 728 (1395)
T ss_pred hHHHHHhcCceeecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 34455555444333332222333344455666666777777777777777753
No 411
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=49.28 E-value=62 Score=30.50 Aligned_cols=14 Identities=7% Similarity=0.173 Sum_probs=8.2
Q ss_pred CCcCCcchHHHHHH
Q 016664 163 TQVEQPLCLECMRV 176 (385)
Q Consensus 163 s~IDhPLC~eC~d~ 176 (385)
.-=|||+|=|++|-
T Consensus 97 GICDy~~CCDGSDE 110 (176)
T PF12999_consen 97 GICDYDICCDGSDE 110 (176)
T ss_pred CcCcccccCCCCCC
Confidence 33466777666554
No 412
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=48.66 E-value=1.7e+02 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~ 259 (385)
++..+-..+..+|..++++.-++...-.++-.+...+.+
T Consensus 7 ~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 7 NLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666655555555555554443
No 413
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.96 E-value=4.9e+02 Score=30.01 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
|++|++.+.+.++++.+.++++...+++|..+.++|.
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555666666666666666655555555554444
No 414
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=47.94 E-value=2.9e+02 Score=27.29 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 016664 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF----------QLIAHQ 279 (385)
Q Consensus 210 ~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~----------ql~~~~ 279 (385)
++..++..++...+...+.+..++..++.+.. ..+++.++.+....+..-+...++|...+. ++.+.+
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~ 151 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENAR 151 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016664 280 EERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 280 ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.+.....+++..++..+..++
T Consensus 152 ~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 152 SSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 415
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=47.87 E-value=1.9e+02 Score=26.36 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 233 IEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 233 LeelEke~~~l~~el~~le~e~ 254 (385)
|-.+-...+.+..++.+|..+.
T Consensus 68 lyallRrqaivRRQ~~~L~Lq~ 89 (147)
T PRK15335 68 IYTLLRKQSIVRRQIKDLELQI 89 (147)
T ss_pred HHHHHHHHHHHHHHHHhccchh
Confidence 3344444444444444444433
No 416
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=47.87 E-value=1.5e+02 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 271 FQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 271 ~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
....++.-+..++.+.-|+. +..||-|
T Consensus 51 ~~~~~L~~~~~r~~l~vQlt--~EkLdel 77 (80)
T PF11488_consen 51 MEVKMLETQDPRDELNVQLT--QEKLDEL 77 (80)
T ss_pred HHHHHHHHhchhhHHhHHHH--HHhHHHH
Confidence 33444555566666555544 5556655
No 417
>PRK10698 phage shock protein PspA; Provisional
Probab=47.81 E-value=2.6e+02 Score=26.81 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 173 CMRVLSDKLDKEVDDVTRDIEAY 195 (385)
Q Consensus 173 C~d~Lle~Ld~qle~~~~E~d~Y 195 (385)
=.+.++..|...+..+.......
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~ 50 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARA 50 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555553333333
No 418
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.64 E-value=68 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
+++.+.+.++++.+++...+..++++.++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 86 EERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 419
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=47.62 E-value=2.9e+02 Score=28.54 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKI----EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 213 e~l~~e~~~L----e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
+++.+|+.++ |.-+.+|..+-+..|+....|.++-.-+-.|...+...=.+-.....-+|.=|.+-++++---.+.
T Consensus 11 ~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~ 90 (328)
T PF15369_consen 11 ANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSE 90 (328)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHHHHHhccccCCCceeeeecCCe
Q 016664 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEF 317 (385)
Q Consensus 289 ~~~~~~qLdkL~ktNV~nd~F~I~hdG~f 317 (385)
+..+..+=..+....-.--.=...-||.|
T Consensus 91 l~~~~~~~q~vsskKs~~qsss~eLDGSY 119 (328)
T PF15369_consen 91 LSAARMKEQQVSSKKSPLQSSSSELDGSY 119 (328)
T ss_pred hhhhhhhhccCCcCCCCCCCCCCCCCcch
No 420
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.61 E-value=2.6e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
...+.++...+.+++...++++
T Consensus 192 ~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 192 DAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333444444444444444443
No 421
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=47.52 E-value=1.9e+02 Score=25.21 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
.+..+.-.+.+..+...|+-.+.++..-. +--..|....+....+.+.+++.+.++.+++..+|...+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666665555543210 1112344555666666666677776666666666665544
No 422
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.31 E-value=47 Score=25.60 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
..+.+++.+++++.+++.++..+++.+.+.+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555554444
No 423
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=47.23 E-value=1.8e+02 Score=24.88 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 212 ~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e-~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
..++...++-.|+|-.-|.+.|.++|++...+..||...+.+.-.++. .-|-. -..-.-.-..++.++.++..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 355666665567777778888999999999999988888765543332 11100 00000011235677777778888
Q ss_pred HHHHHHHHHhccc
Q 016664 291 VSQAHLELLKRTN 303 (385)
Q Consensus 291 ~~~~qLdkL~ktN 303 (385)
-....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 8887777777655
No 424
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=47.09 E-value=4e+02 Score=28.69 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHH
Q 016664 335 WDEINAAWGQACLL 348 (385)
Q Consensus 335 W~EINAAwGQ~~LL 348 (385)
|+.+-...-.++|+
T Consensus 475 f~~v~~~~r~~~l~ 488 (582)
T PF09731_consen 475 FERVAPEVRRASLV 488 (582)
T ss_pred HHHHHHHHHHHHhc
Confidence 44443333344444
No 425
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=47.05 E-value=2.9e+02 Score=27.06 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016664 277 AHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 277 ~~~ee~~sl~~q~~~~~~qLd 297 (385)
..+.+..+++++++.++.+|+
T Consensus 183 ~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 183 LAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666665554
No 426
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.94 E-value=3.1e+02 Score=27.45 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (385)
Q Consensus 233 LeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~ 282 (385)
.+++|.+...|..|-+.|..|...|....+.+.-+-+++...|..+.+++
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444333333334444444444444444444444444444333333
No 427
>PLN02678 seryl-tRNA synthetase
Probab=46.86 E-value=1.6e+02 Score=31.43 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.++-+.|.++|..+|.+..++.+++.++-
T Consensus 77 ~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 77 IAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666655555443
No 428
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.85 E-value=3.3e+02 Score=27.69 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 233 LeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
-.+|..|+..+.-++.-|+-+...+++.=.+.-++|.+...++.......+.|..++...+.+|.
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333222233333333333444444444455555555554443
No 429
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=46.59 E-value=1.7e+02 Score=25.67 Aligned_cols=35 Identities=11% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 245 ~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
..++..+.....+.++..+|+++.++-+.+...+.
T Consensus 21 ~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr 55 (125)
T PF03245_consen 21 AAIEDMQQRQQALAALDAKYTKELADAKAEIDRLR 55 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555556778888888888877766543333
No 430
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.49 E-value=3.3e+02 Score=27.60 Aligned_cols=8 Identities=25% Similarity=0.845 Sum_probs=3.6
Q ss_pred eeeccccC
Q 016664 318 GTINNFRL 325 (385)
Q Consensus 318 GTINglRL 325 (385)
|+=|-|..
T Consensus 221 gs~~~f~~ 228 (333)
T KOG1853|consen 221 GSKEEFKM 228 (333)
T ss_pred CchhhcCC
Confidence 44444443
No 431
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=46.45 E-value=3.1e+02 Score=27.27 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQRL 202 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (385)
++.++++++.+...-+.-++.+
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~ 105 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTT 105 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666665555555543
No 432
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.04 E-value=2.2e+02 Score=25.50 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 016664 286 SSKIEVSQAHLELL 299 (385)
Q Consensus 286 ~~q~~~~~~qLdkL 299 (385)
..++.+.+..++-+
T Consensus 199 ~~qi~~~~~~~~~W 212 (218)
T cd07596 199 RLQVQYAEKIAEAW 212 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 433
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=46.02 E-value=7.2 Score=33.61 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~ 259 (385)
+.+.-++.+++.+||.+...+..++.+++.+...++.
T Consensus 5 d~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~ 41 (118)
T PF08286_consen 5 DNEKFRLAKELSDLESELESLQSELEELKEELEELEE 41 (118)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555544444433
No 434
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=45.93 E-value=3.4e+02 Score=29.81 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 016664 192 IEAYEACLQRLE 203 (385)
Q Consensus 192 ~d~Y~~fL~~L~ 203 (385)
.+.|+.-++.|+
T Consensus 193 ~~~yk~~v~~i~ 204 (555)
T TIGR03545 193 LEEYKKRLEAIK 204 (555)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 435
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.82 E-value=1.6e+02 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
.|...+..+...++.+..++..++
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~ 27 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLI 27 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555555554
No 436
>PF13166 AAA_13: AAA domain
Probab=45.81 E-value=4.4e+02 Score=28.82 Aligned_cols=6 Identities=33% Similarity=0.412 Sum_probs=2.7
Q ss_pred HHHHHH
Q 016664 294 AHLELL 299 (385)
Q Consensus 294 ~qLdkL 299 (385)
..|..|
T Consensus 466 ~~L~~~ 471 (712)
T PF13166_consen 466 EELKRL 471 (712)
T ss_pred HHHHHh
Confidence 344444
No 437
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=45.16 E-value=1.6e+02 Score=29.52 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=12.0
Q ss_pred HHH--HHHHHHHHHHHHHHHhc
Q 016664 185 VDD--VTRDIEAYEACLQRLEG 204 (385)
Q Consensus 185 le~--~~~E~d~Y~~fL~~L~~ 204 (385)
+++ +++|+|.-.+.++-..+
T Consensus 73 FeD~~vEkEvdvRkr~~r~Fnk 94 (314)
T COG5220 73 FEDITVEKEVDVRKRLLRAFNK 94 (314)
T ss_pred cchhhhhhhhhHHHHHHHHhcc
Confidence 444 46677766666665543
No 438
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.10 E-value=1.1e+02 Score=33.09 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (385)
.-|.++++-|.+++ +.|...++.+
T Consensus 337 ~dL~~R~K~Q~q~~----~~~r~ri~~i 360 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEV----KQHRIRINAI 360 (508)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34555555555554 4444444443
No 439
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=45.03 E-value=38 Score=29.73 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHHh
Q 016664 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELLK 300 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~--~~ee~~sl~~q----~~~~~~qLdkL~ 300 (385)
+++-..+..+|.+.-.+-+|+..+++....+-++....--+-..+...|.+ +.+.--.-+.. ......+|.+|
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l- 82 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL- 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH-
Q ss_pred ccccCCCceeeeecCCee
Q 016664 301 RTNVLNDAFPIWHDGEFG 318 (385)
Q Consensus 301 ktNV~nd~F~I~hdG~fG 318 (385)
|++-|||.+ -+||
T Consensus 83 ----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 ----YQEGFHICN-VHYG 95 (114)
T ss_pred ----HhccchhHH-HHhc
No 440
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.99 E-value=1.8e+02 Score=30.56 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
|.+++ ++++...+..+.+.-+.-.+.+.++.... ...+ +..++.++-+++.++|+++|++..++++++.++
T Consensus 28 d~i~~-ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLE-LDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 55555555555555544444443321100 0000 111233344445555555555555555554443
No 441
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.90 E-value=1.3e+02 Score=33.64 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
|+.++|...++|..+|+++-...+++.++|...+.|..+|+
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444445555555555555555555554444444444
No 442
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=44.89 E-value=3e+02 Score=28.49 Aligned_cols=11 Identities=27% Similarity=0.063 Sum_probs=7.1
Q ss_pred eccccCCCCCC
Q 016664 320 INNFRLGRLPK 330 (385)
Q Consensus 320 INglRLGrlp~ 330 (385)
-||+..-|.|.
T Consensus 197 sng~~~kr~~~ 207 (351)
T PF07058_consen 197 SNGGLSKRRPS 207 (351)
T ss_pred CCCccccCCCc
Confidence 47776666654
No 443
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.82 E-value=1e+02 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (385)
|..||.-++.|-.--.+-+.
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ 25 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLS 25 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333
No 444
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=44.70 E-value=4.2e+02 Score=31.14 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+.+|.+-+.+..+++++.|+.+++.+++++++.++-
T Consensus 998 kefE~~mrdhrselEe~kKe~eaiineiee~eaeIi 1033 (1424)
T KOG4572|consen 998 KEFEIEMRDHRSELEEKKKELEAIINEIEELEAEII 1033 (1424)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777888888888888888888777653
No 445
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.62 E-value=2.9e+02 Score=26.39 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 170 CLECMRVLSDKLDKEVDDVTRDIEA 194 (385)
Q Consensus 170 C~eC~d~Lle~Ld~qle~~~~E~d~ 194 (385)
|..=.+.|-+.+..+...+..+++.
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~ 40 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQE 40 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666665
No 446
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.62 E-value=3e+02 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 262 ERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 262 ~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
+..|...+.|.-.|..+++-++...++.
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777776666666555544333
No 447
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=44.62 E-value=3.8e+02 Score=27.73 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISS 287 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~ 287 (385)
+|-...|.-+..+.++++.+..+..
T Consensus 184 KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 184 KFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 5666677777777777666655443
No 448
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=44.48 E-value=2.2e+02 Score=31.43 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE---RDAISSKIEV 291 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee---~~sl~~q~~~ 291 (385)
++++...+-+..+++...+..+.+-+..+...+.....+...+ ..+.+.++.+....+.+ ..+...+|..
T Consensus 36 ~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~l-------l~~~~~L~~~~~~~~~k~~ll~~f~~~f~L 108 (618)
T PF06419_consen 36 FLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDL-------LEEASELREQKEELELKKKLLDAFLERFTL 108 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334444444444555555555555555555555444433333 33344444433333333 3345566777
Q ss_pred HHHHHHHHhcc-ccCCCce
Q 016664 292 SQAHLELLKRT-NVLNDAF 309 (385)
Q Consensus 292 ~~~qLdkL~kt-NV~nd~F 309 (385)
...+++.|... ...|+.|
T Consensus 109 s~~E~~~L~~~~~~v~~~F 127 (618)
T PF06419_consen 109 SEEEEDALTSGEEPVDDEF 127 (618)
T ss_pred CHHHHHHHhCCCCCCCHHH
Confidence 77888889888 3335554
No 449
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=44.45 E-value=1.4e+02 Score=27.84 Aligned_cols=23 Identities=4% Similarity=0.211 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016664 279 QEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+.++..+++++..++.+|+.++.
T Consensus 60 ~~~~~~~~~~~~~~~~~l~~~~~ 82 (265)
T TIGR00999 60 EYALEEAQAEVQAAKSELRSARE 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444455556666666665543
No 450
>PRK10722 hypothetical protein; Provisional
Probab=44.41 E-value=88 Score=31.01 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
+.+|+.+-++...+..++.....+.++|.+.|.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777774
No 451
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.09 E-value=1.5e+02 Score=23.09 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.+.|.+++....+....|..++.|...+.
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555555556666655555443
No 452
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=44.01 E-value=2.1e+02 Score=28.56 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDV 188 (385)
Q Consensus 175 d~Lle~Ld~qle~~ 188 (385)
|.|..+|++.+-.+
T Consensus 160 d~l~~eLqkr~~~v 173 (289)
T COG4985 160 DPLERELQKRLLEV 173 (289)
T ss_pred cHHHHHHHHHHHHH
Confidence 55666666666554
No 453
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=43.76 E-value=2e+02 Score=28.13 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 016664 279 QEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
+.+.+....++..++..++.++.
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~~~ 156 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEALA 156 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 454
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.76 E-value=1.9e+02 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~ 206 (385)
.+.+..++..+..+.+.-..-++.+.++.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~Ged 42 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGED 42 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44555666666666666666666555543
No 455
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.66 E-value=2.1e+02 Score=32.00 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.||.....+|--|..-|.-||+...+-...+++.|+++++|++.++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555554443
No 456
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=43.41 E-value=2.5e+02 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCe
Q 016664 278 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEF 317 (385)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~f 317 (385)
+..++..+.+....-+.++++|++-| ++|.=|.|.+.
T Consensus 66 Lr~~~~~~~~~l~~re~~i~rL~~EN---e~lR~Wa~t~L 102 (135)
T TIGR03495 66 LRQQLAQARALLAQREQRIERLKREN---EDLRRWADTPL 102 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHhcCCC
Confidence 34445555666667777788888764 66777777653
No 457
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.30 E-value=3e+02 Score=26.22 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK-SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~le~e-~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
|+.....+.++|..+.++.+.++.+.+..+.+ ...|..+|. -|+++-.--.+ .+-....|++++...+.+...+
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~-~W~~~v~kn~e---ie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQ-RWKELVSKNLE---IEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445545555444444433332 234555553 46555443333 2233333444444444444333
No 458
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.28 E-value=3.8e+02 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=13.7
Q ss_pred ccchHHHHHHHHHhhcCCCCcCCc
Q 016664 145 FHSTITVLKRAFEIATSQTQVEQP 168 (385)
Q Consensus 145 lss~i~~l~~lFdIlSs~s~IDhP 168 (385)
+..-|.+-.+++.|. +++.-|.|
T Consensus 68 vekEV~iRkrv~~i~-Nk~e~dF~ 90 (309)
T TIGR00570 68 VEKEVDIRKRVLKIY-NKREEDFP 90 (309)
T ss_pred HHHHHHHHHHHHHHH-ccchhccC
Confidence 455566666666666 45555555
No 459
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=43.12 E-value=5.8e+02 Score=29.47 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
...++.++.+...+.+.+-.-++....+++.|+
T Consensus 225 ~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 225 LESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444
No 460
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=42.90 E-value=3.5e+02 Score=26.86 Aligned_cols=65 Identities=17% Similarity=0.307 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCce
Q 016664 244 NAELKELELKSKRFKELEERYWQEFNNFQFQ----------LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (385)
Q Consensus 244 ~~el~~le~e~~~l~~eE~~~w~e~n~~q~q----------l~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F 309 (385)
+.-...++.+....-+..+-||++.-....+ +.++++-+++|+..+.....+|+.++. -|++..|
T Consensus 153 e~~~e~IE~~y~~cv~eQe~YWke~e~~E~Efre~~~k~~s~ee~~~~l~~Le~~l~~~~~~L~~~e~-~i~~~~~ 227 (241)
T PF09321_consen 153 EKAYENIEEEYQQCVREQEDYWKEEEKKEAEFREEGGKVLSLEEVQEGLQSLEDLLEAWSKQLDKAEK-HILKAEL 227 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence 4444556666666667777888887766633 356677777888888888888887764 2444444
No 461
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.74 E-value=2.8e+02 Score=28.24 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.|..+|..++.+|..+-+-.----.-+.|...||+-+-|
T Consensus 165 ~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 165 AHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 455555555444333322211111123455555554444
No 462
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=42.72 E-value=4e+02 Score=27.44 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEET-EKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 222 Le~EE~~L~~eLeel-Eke~~~l~~el~~le~e~~~l 257 (385)
+..+|++|.+.++.- +++.++++.++..|+.-+.++
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555432 445555555555555544433
No 463
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.57 E-value=4.6e+02 Score=28.18 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Q 016664 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE-RDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 238 ke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee-~~sl~~q~~~~~~qLdkL~kt 302 (385)
.+..++.+++++|......+..+-...-.+||..+..-.+...+ +.++.-.....+..-+.|+..
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555554444444444455666666666554442222 223333333333334446553
No 464
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.35 E-value=8.3 Score=42.68 Aligned_cols=7 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHh
Q 016664 294 AHLELLK 300 (385)
Q Consensus 294 ~qLdkL~ 300 (385)
.+.+.|+
T Consensus 412 ~e~~~L~ 418 (713)
T PF05622_consen 412 EERDSLR 418 (713)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 465
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.34 E-value=4.7e+02 Score=28.78 Aligned_cols=18 Identities=6% Similarity=0.292 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIE 193 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d 193 (385)
...+.++..+++....++
T Consensus 164 ~~~~~~~~~~k~~~~~w~ 181 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWK 181 (555)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555444443
No 466
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=42.22 E-value=2.1e+02 Score=27.37 Aligned_cols=35 Identities=40% Similarity=0.418 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e 260 (385)
...+..++.+.+++.+.+++.++.++.+..+++..
T Consensus 72 ~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~ 106 (192)
T COG3334 72 LYALQKELLEKLKDLAEVNERLKALEKKKAELKDL 106 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777777776654444433
No 467
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=42.04 E-value=2.4e+02 Score=24.82 Aligned_cols=11 Identities=9% Similarity=0.495 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 016664 149 ITVLKRAFEIA 159 (385)
Q Consensus 149 i~~l~~lFdIl 159 (385)
..+++-||++|
T Consensus 34 ~~vin~i~~Ll 44 (151)
T PF11559_consen 34 VRVINCIYDLL 44 (151)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 468
>PLN03086 PRLI-interacting factor K; Provisional
Probab=42.00 E-value=3.3e+02 Score=30.17 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=21.4
Q ss_pred HHHHHHhcccc---CCCceeeee---cCCeeeecc
Q 016664 294 AHLELLKRTNV---LNDAFPIWH---DGEFGTINN 322 (385)
Q Consensus 294 ~qLdkL~ktNV---~nd~F~I~h---dG~fGTINg 322 (385)
.-|++|.+.|+ |-..|.|+. +|+++..++
T Consensus 99 SaL~~L~~~~~~~~~Pm~F~l~~~~~~~~~~~~~~ 133 (567)
T PLN03086 99 SCFTELSDQGAFDKGPLYFRLSVVHQEGSGEMKDT 133 (567)
T ss_pred HHHHHHHhcCCCCCCCeEEEEeccccccccccccc
Confidence 45888888888 788999997 465554443
No 469
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=42.00 E-value=2.4e+02 Score=24.73 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
.+|.++..+-+.+..|+..+. ...++......+..+-..|....-.++.+...+..++...-.+...+...=.
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~-------~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLP-------QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
.-|+.+..+... =-.+.+.+++..+-.+.|
T Consensus 80 ~k~~~~~~l~~~-----~s~~~l~~~L~~~~~e~e 109 (150)
T PF07200_consen 80 EKEQQQDELSSN-----YSPDALLARLQAAASEAE 109 (150)
T ss_dssp HHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHH
No 470
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.86 E-value=1.6e+02 Score=30.81 Aligned_cols=79 Identities=10% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHH-HHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE--LELKSKRFKELEERYWQEFNNF-QFQLIAHQE-ERDA-ISSKIE 290 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~--le~e~~~l~~eE~~~w~e~n~~-q~ql~~~~e-e~~s-l~~q~~ 290 (385)
..|.-.|..|-.+|.+|.++|..+.++|+++... +.++.+..+..=+..-+-.|.+ +.-+.+..+ ++++ +.|+++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~d~~~ld~~lLARve 110 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQRDDLKLDSVLLARVE 110 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHH
Q ss_pred HHHH
Q 016664 291 VSQA 294 (385)
Q Consensus 291 ~~~~ 294 (385)
-...
T Consensus 111 ~LlR 114 (420)
T PF07407_consen 111 TLLR 114 (420)
T ss_pred HHHH
No 471
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=41.70 E-value=2.9e+02 Score=25.51 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~-~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
+.++..++.+|.++.+.++.+.+-|..-+...+.+...++..+- -..+-..-...++.++.-+.+.+..+-...+.+.+
T Consensus 25 L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~ 104 (147)
T PF02090_consen 25 LLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQ 104 (147)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhc
Q 016664 298 LLKR 301 (385)
Q Consensus 298 kL~k 301 (385)
.+.+
T Consensus 105 ~~~~ 108 (147)
T PF02090_consen 105 EQQE 108 (147)
T ss_pred HHHH
No 472
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.63 E-value=3.6e+02 Score=26.71 Aligned_cols=122 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
...+-..+.-..+..+-+....+|+........+ +-..+...+....+|++.|.+-+.+.|.+..+..+-+.+-+...
T Consensus 11 et~l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~n--S~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 11 ETMLSLGDICEKDIHNQRSKIDSFIQSPRRRSMN--SLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 255 ~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..++++-..+-.+.-.+.+.+.-+.+|.+-...=+-....-+-|
T Consensus 89 ~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~K 132 (246)
T KOG4657|consen 89 MGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSK 132 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 473
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=41.61 E-value=2.3e+02 Score=25.16 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
+.|..+.+.-.++...+...|+.+... -+.+.+--........++...-.+|....-.+...++-+......+.
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~------l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~ 106 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDK------LEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALS 106 (141)
T ss_dssp -------------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 259 ELEERYWQEFNNFQFQL 275 (385)
Q Consensus 259 ~eE~~~w~e~n~~q~ql 275 (385)
.+|++.+..+..+..++
T Consensus 107 ~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 107 PEEEELRKRLEALEAQL 123 (141)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
No 474
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.43 E-value=5e+02 Score=28.20 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL----KSK 255 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~----e~~ 255 (385)
.+-.+..+...+.+....-+..+.. ...+...++.+...+..++..++.+.+++...++..+. +..
T Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 33 EQLAEREEMVAELSAAKQQITQSEH----------WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc
Q 016664 256 RFKELEERYWQEFNNFQFQLIAHQEER------DAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 256 ~l~~eE~~~w~e~n~~q~ql~~~~ee~------~sl~~q~~~~~~qLdkL~k 301 (385)
.|++.++++-.+|.++-.+.++...+. .+|..-+.=.+.+|+..++
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~ 154 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRR 154 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 475
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=41.42 E-value=4.7e+02 Score=27.90 Aligned_cols=150 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
++.=-..|..+.+.+....+.-+...+.|+++.... --.-....+..+..+...+..+|+.++.-...+.-..+..++.
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R-gvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~ 282 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR-GVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWES 282 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeecccc
Q 016664 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFR 324 (385)
Q Consensus 254 ~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglR 324 (385)
..+.--+|++|.+.-.++-.+|.+-.+.....-..++....+..+-...+--+-+=..-...+..+.|+.|
T Consensus 283 EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~ 353 (424)
T PF03915_consen 283 ELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEAR 353 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHH
No 476
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=41.24 E-value=3.4e+02 Score=27.61 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
..+..+--|-++++.|....+-. +.|+..|.+.|++|......-++++. .+..+.++
T Consensus 5 ~~l~~llt~~eaw~~~~~~~~l~-----------------rde~d~l~~~L~~l~~~~~~~d~~~~------~~~~~~~~ 61 (313)
T PF05461_consen 5 EDLQLLLTEDEAWERFVAEAELS-----------------RDEADALREALKELTEDMDSEDKDRS------QKDQQDRE 61 (313)
T ss_pred HHHHHHHhhHHHHHHHHHhccCc-----------------hhhHHHHHHHHHHHHhhhhccccchh------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 263 ~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
.|.++|..++.+|.++-.++..+..+++....
T Consensus 62 ~FL~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk 93 (313)
T PF05461_consen 62 RFLKEFPQLKEELEEHIRKLRALADEIDKVHK 93 (313)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.21 E-value=3.4e+02 Score=28.07 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELL 299 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl--------~~q~~~~~~qLdkL 299 (385)
+..+|.+++++|.+++++.-+....+.+++.+....-=.....-+.++.++...+... ...++..+.++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred hcc
Q 016664 300 KRT 302 (385)
Q Consensus 300 ~kt 302 (385)
+..
T Consensus 81 ~~~ 83 (330)
T PF07851_consen 81 RCQ 83 (330)
T ss_pred Hhh
No 478
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.19 E-value=3.6e+02 Score=27.86 Aligned_cols=83 Identities=13% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 016664 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEK-----QNAEVNAE 246 (385)
Q Consensus 172 eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEk-----e~~~l~~e 246 (385)
||.+-.-+ |.+++.++++....|..-++.+.+ ........+.+-+...++|.+.|+.+++ +.+.+++-
T Consensus 1 e~~eEW~e-L~~efq~Lqethr~Y~qKleel~~------lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L 73 (330)
T PF07851_consen 1 ECEEEWEE-LQKEFQELQETHRSYKQKLEELSK------LQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKL 73 (330)
T ss_pred ChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 247 LKELELKSKRFKELE 261 (385)
Q Consensus 247 l~~le~e~~~l~~eE 261 (385)
-++++.....+.+.|
T Consensus 74 ~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 74 EEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHhhHHHHH
No 479
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.19 E-value=4.7e+02 Score=27.91 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAE-VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~-l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
..+.+|+.++++-...|+...+.|+.+... +.==.+.|++|.-+.+.+|++.-....-.|.+...+..|+.+++.++.|
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaY 342 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAY 342 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 016664 292 SQAHLEL 298 (385)
Q Consensus 292 ~~~qLdk 298 (385)
....-.|
T Consensus 343 QsyERaR 349 (455)
T KOG3850|consen 343 QSYERAR 349 (455)
T ss_pred HHHHHHH
No 480
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=40.86 E-value=2.7e+02 Score=24.95 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSK-----RFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~-----~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~ 287 (385)
++-.+.+.+.+..++.|+++|+-+.+.+..+.. .....-.+|=++.+.+.-+...+...+..+..
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 481
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.62 E-value=2e+02 Score=24.80 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (385)
Q Consensus 210 ~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e 260 (385)
++..++...+..+++....+.+++.+|.++..++-+|=..|+.|...|.+.
T Consensus 1 Mdk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=40.58 E-value=64 Score=26.66 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.+..+|.++|+.++++.+.+..++..++.+.+-|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 483
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.27 E-value=2e+02 Score=23.26 Aligned_cols=82 Identities=16% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER---------------YWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~---------------~w~e~n~~q~ql~~~~ee~~s 284 (385)
..+-.+-.++..++..+..+...+..++..++.-...|+..+.. .=.....+..+...++.+...
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016664 285 ISSKIEVSQAHLELLKR 301 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~k 301 (385)
+..++.+...++..++.
T Consensus 81 l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 484
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=39.76 E-value=1.8e+02 Score=27.76 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 210 ~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
++..++..++..++.+...+..+++.++++..+.....+.--.-..+++..+ .++...+.++...+.++..++.++
T Consensus 57 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~ 132 (322)
T TIGR01730 57 LDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAK----AAVEAAQADLEAAKASLASAQLNL 132 (322)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH
Q 016664 290 EV 291 (385)
Q Consensus 290 ~~ 291 (385)
..
T Consensus 133 ~~ 134 (322)
T TIGR01730 133 RY 134 (322)
T ss_pred cc
No 485
>PHA03161 hypothetical protein; Provisional
Probab=39.70 E-value=1.1e+02 Score=28.19 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCce
Q 016664 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F 309 (385)
.+...+++.-...++..|+..+.|..-|......=....-+++-...++.++++--...+...+..
T Consensus 53 ~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q~~-------------- 118 (150)
T PHA03161 53 LKKQKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQPS-------------- 118 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------------
Q ss_pred eeeecCCee-------eeccccCCCCCCCC
Q 016664 310 PIWHDGEFG-------TINNFRLGRLPKIP 332 (385)
Q Consensus 310 ~I~hdG~fG-------TINglRLGrlp~~~ 332 (385)
.|+...| ||=..||+++|.+|
T Consensus 119 --~~~~~~~~~~~~~dtI~~WRLE~lPrcP 146 (150)
T PHA03161 119 --SQEEENSSENSIPDTIMQWRIEALPRVP 146 (150)
T ss_pred --cCCCCCCccCchhhHHHHHHHhhCCCCC
No 486
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.64 E-value=2.2e+02 Score=25.44 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
+..|-+-+-...+.++....-|=-+.. ++++-.+.+.+|++|.+...+++.+.-++.+++-+.+..+
T Consensus 71 ~~elA~dIi~kakqIe~LIdsLPg~~~------see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 71 IKELATDIIRKAKQIEYLIDSLPGIEV------SEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSSS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=39.61 E-value=3.5e+02 Score=28.08 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 210 ~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
++..++...+.+.|......++++..++.+.....+.++..+.+....-+.+ |.-|..+...-.--.++++...+.+
T Consensus 84 iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~---~~R~~~L~~~g~vs~~~~~~a~~a~ 160 (352)
T COG1566 84 IDPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNE---LERRAELAQRGVVSREELDRARAAL 160 (352)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCcccHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 016664 290 EVSQAHLEL 298 (385)
Q Consensus 290 ~~~~~qLdk 298 (385)
..++..+..
T Consensus 161 ~~A~A~~~~ 169 (352)
T COG1566 161 QAAEAALAA 169 (352)
T ss_pred HHHHHHHHH
No 488
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=39.60 E-value=9.7 Score=43.34 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
+..|..+++.+.+.+..-..--..|..+..+... -+.+.+.+...+.--+.++.+|.++.....+....+.++......
T Consensus 133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~k 212 (859)
T PF01576_consen 133 VAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAK 212 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
|..+-..+-+.+.....++..+.....++..+++-++.+|+
T Consensus 213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~le 253 (859)
T PF01576_consen 213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLE 253 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
No 489
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=39.54 E-value=53 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~ 259 (385)
+++.|..||+.+.+.+++....+.+....++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~kq 60 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAKQ 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 490
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=39.52 E-value=4.5e+02 Score=27.21 Aligned_cols=79 Identities=25% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE-VSQAH 295 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~-~~~~q 295 (385)
+.+..+..-.++|..--++-|.-..++..|....+.++..|+++.+-..++..+++.|..+.++-+ --|. |...|
T Consensus 5 ~dk~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell----~lyq~ylseq 80 (328)
T PF15369_consen 5 EDKRRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELL----SLYQKYLSEQ 80 (328)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_pred HHHH
Q 016664 296 LELL 299 (385)
Q Consensus 296 LdkL 299 (385)
-+||
T Consensus 81 q~kl 84 (328)
T PF15369_consen 81 QEKL 84 (328)
T ss_pred HHHH
No 491
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=39.34 E-value=3.5e+02 Score=25.81 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK------------SKRFKELEERYWQEFNNFQFQLIAHQEE 281 (385)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e------------~~~l~~eE~~~w~e~n~~q~ql~~~~ee 281 (385)
+++.+..+....-+.+.+.|...-++...+.++|..+... ..+|+..-..........+.++..+.++
T Consensus 28 ~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~ 107 (240)
T PF12795_consen 28 SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQ 107 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 016664 282 RDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 282 ~~sl~~q~~~~~~qLdkL~k 301 (385)
+..+....+.++..+...++
T Consensus 108 l~~~~~~p~~aq~~l~~~~~ 127 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQ 127 (240)
T ss_pred HHHHHccHHHHHHHHHHHHH
No 492
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.31 E-value=53 Score=30.66 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
|+-|+.+|.++.+..--.+.-| .|++.|..+-++|+.|+.+|..|. .+.+.+.....+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----------------dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~ 59 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----------------DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRK 59 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHCH---------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcc
No 493
>PRK14160 heat shock protein GrpE; Provisional
Probab=39.09 E-value=3.7e+02 Score=26.03 Aligned_cols=86 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD--AISSKIEVSQ 293 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~--sl~~q~~~~~ 293 (385)
.++....+..+..-+..+..++++...+.+++..++.+...+.+.-.+.-.+|-+|++....-.++.. ++..-+.-..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 39 IEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHhc
Q 016664 294 AHLELLKR 301 (385)
Q Consensus 294 ~qLdkL~k 301 (385)
-=+|.|.+
T Consensus 119 pVlDnLer 126 (211)
T PRK14160 119 PVLDNLER 126 (211)
T ss_pred hHHhHHHH
No 494
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=38.93 E-value=1.7e+02 Score=27.82 Aligned_cols=51 Identities=10% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (385)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~ 264 (385)
.+.+|..+...-...-..+|+.|.++...|..+|..-..+.++|.+.|.+.
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQL 163 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQL 163 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
No 495
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.72 E-value=60 Score=29.59 Aligned_cols=60 Identities=12% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 238 ke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL 299 (385)
++..++..|+.++.+|...+...++ +..|..+++++....+|++.++++....+...++.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDe--FAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~ 99 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDE--FAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKS 99 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=38.69 E-value=2.7e+02 Score=24.35 Aligned_cols=106 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
+..-++....+++.+...+..|..-+..-.....++..--.+..=+..|..........+..++.+.+.....+.+...+
T Consensus 28 a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 28 AVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 254 SKRFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 254 ~~~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
.+.++.+-++...+|..-+.......
T Consensus 108 ~k~~ekLker~~~~~~~~e~r~EQk~ 133 (146)
T PRK07720 108 VKKYEKMKEKKQEMFALEEKAAEMKE 133 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK08453 fliD flagellar capping protein; Validated
Probab=38.40 E-value=92 Score=34.99 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
+...-+.|.++...++.++..++ ++|+..|++||+.|..+..++..+.....+|
T Consensus 619 l~~~~~sL~~q~k~L~~q~~~~e---~rL~~ry~rl~~qFsAmDs~IsqmNsq~~~~ 672 (673)
T PRK08453 619 LKIYEDSLTRDAKSLTKDKENAQ---ELLKTRYDIMAERFAAYDSQISKANQKFNSV 672 (673)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
No 498
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=38.36 E-value=6.3e+02 Score=28.51 Aligned_cols=129 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 174 ~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
.+.+...+.......+..++.+.+-...|+........-++.......++..-..+........++...+.+++..++.+
T Consensus 177 ~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~ 256 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAE 256 (670)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcc
Q 016664 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ---AHLELLKRT 302 (385)
Q Consensus 254 ~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~---~qLdkL~kt 302 (385)
...++.....+-+++............++.+....|.--. .+-.+|..+
T Consensus 257 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 257 LKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNE 308 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.27 E-value=1.6e+02 Score=30.68 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~n 306 (385)
|.-.|..|.+.|.+|..+|..|..+| +.| +--....+...-++.+++.+..-+++.|+.+.|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL-E~e-----------~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq 95 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL-ENE-----------MLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQ 95 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH-HHH-----------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhc
No 500
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.11 E-value=1.5e+02 Score=29.17 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 269 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n 269 (385)
+..+-+...+.-.+|++|+..+.++...+..|++.|++....|-+.= +|++.|+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi-RylqSY~ 137 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI-RYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCc
Done!