Query 016664
Match_columns 385
No_of_seqs 150 out of 231
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 5.3E-49 1.8E-53 366.1 8.2 109 276-385 1-111 (210)
2 3vp7_A Vacuolar protein sortin 100.0 4.4E-41 1.5E-45 314.7 6.8 75 302-377 1-75 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.8 6.6E-18 2.2E-22 140.1 15.0 90 213-302 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.4 7.6E-08 2.6E-12 64.6 1.1 27 142-168 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.7 0.17 5.9E-06 44.4 18.6 20 181-200 4-23 (284)
6 2v71_A Nuclear distribution pr 96.4 0.48 1.6E-05 43.5 19.5 27 177-203 18-44 (189)
7 1c1g_A Tropomyosin; contractIl 96.2 0.58 2E-05 41.0 19.4 14 183-196 27-40 (284)
8 3q8t_A Beclin-1; autophagy, AT 96.2 0.28 9.4E-06 40.2 15.1 88 191-291 5-92 (96)
9 2efr_A General control protein 95.8 0.99 3.4E-05 40.1 20.1 81 221-301 74-154 (155)
10 2dfs_A Myosin-5A; myosin-V, in 95.5 0.12 4.1E-06 58.1 13.7 26 229-254 982-1007(1080)
11 3na7_A HP0958; flagellar bioge 95.5 1.4 4.7E-05 41.2 18.9 12 366-377 222-233 (256)
12 3na7_A HP0958; flagellar bioge 95.3 1.8 6.2E-05 40.4 19.0 35 267-301 151-186 (256)
13 3oja_B Anopheles plasmodium-re 95.1 0.33 1.1E-05 49.4 14.4 41 262-302 526-566 (597)
14 3hnw_A Uncharacterized protein 95.1 0.3 1E-05 42.5 12.1 68 215-282 66-133 (138)
15 2v71_A Nuclear distribution pr 94.9 2.1 7.2E-05 39.2 17.7 100 187-289 7-111 (189)
16 3vkg_A Dynein heavy chain, cyt 94.6 0.84 2.9E-05 56.6 18.2 65 230-294 2013-2077(3245)
17 3o0z_A RHO-associated protein 91.7 7.2 0.00025 35.1 18.1 55 243-297 95-153 (168)
18 3vkg_A Dynein heavy chain, cyt 91.6 3.4 0.00012 51.5 17.0 34 171-204 1898-1931(3245)
19 2v4h_A NF-kappa-B essential mo 91.4 3.8 0.00013 34.6 12.3 22 278-299 88-109 (110)
20 2efr_A General control protein 91.4 7.4 0.00025 34.5 18.6 32 266-297 98-129 (155)
21 3oja_A Leucine-rich immune mol 91.0 4.6 0.00016 40.2 14.8 32 248-279 438-469 (487)
22 3bas_A Myosin heavy chain, str 90.3 5.9 0.0002 31.6 12.4 68 218-299 15-82 (89)
23 3s4r_A Vimentin; alpha-helix, 89.7 7.1 0.00024 31.6 12.9 42 260-301 50-91 (93)
24 1l8d_A DNA double-strand break 89.6 7.1 0.00024 31.6 12.4 34 264-297 69-102 (112)
25 1ic2_A Tropomyosin alpha chain 89.2 6.6 0.00023 30.7 12.6 36 266-301 41-76 (81)
26 3hnw_A Uncharacterized protein 87.7 7.4 0.00025 33.6 11.8 59 221-279 65-123 (138)
27 3oja_A Leucine-rich immune mol 87.5 17 0.00059 36.0 16.1 40 251-290 434-473 (487)
28 3u1c_A Tropomyosin alpha-1 cha 87.1 11 0.00038 30.7 15.0 67 178-250 4-70 (101)
29 3bas_A Myosin heavy chain, str 86.7 11 0.00037 30.1 12.1 36 218-253 22-57 (89)
30 3a7p_A Autophagy protein 16; c 86.2 14 0.00046 32.8 12.7 20 232-251 69-88 (152)
31 3ghg_A Fibrinogen alpha chain; 85.9 8.5 0.00029 40.3 12.9 45 266-313 131-175 (562)
32 3u1c_A Tropomyosin alpha-1 cha 85.8 13 0.00044 30.3 14.6 71 228-298 27-97 (101)
33 3ol1_A Vimentin; structural ge 85.6 15 0.00051 30.7 13.4 11 194-204 17-27 (119)
34 3u59_A Tropomyosin beta chain; 85.2 14 0.00047 30.0 14.5 23 178-200 4-26 (101)
35 3iox_A AGI/II, PA; alpha helix 85.1 14 0.00046 38.4 13.9 94 189-287 8-101 (497)
36 1ic2_A Tropomyosin alpha chain 84.2 13 0.00043 29.0 10.5 66 180-251 3-68 (81)
37 3s9g_A Protein hexim1; cyclin 83.9 14 0.00047 30.7 10.9 50 209-258 29-78 (104)
38 3mq9_A Bone marrow stromal ant 83.8 12 0.00042 36.9 12.8 25 231-255 443-467 (471)
39 2zqm_A Prefoldin beta subunit 81.0 12 0.0004 30.2 9.6 34 221-254 74-107 (117)
40 2ocy_A RAB guanine nucleotide 80.9 29 0.001 30.7 17.5 33 269-301 111-143 (154)
41 3ghg_A Fibrinogen alpha chain; 80.9 48 0.0016 34.8 16.0 19 288-306 177-195 (562)
42 3tnu_B Keratin, type II cytosk 80.8 24 0.00082 29.6 12.1 34 218-251 37-70 (129)
43 3a7p_A Autophagy protein 16; c 80.2 31 0.0011 30.5 12.8 31 218-248 69-99 (152)
44 3nmd_A CGMP dependent protein 80.1 6 0.0002 31.1 7.0 41 215-255 24-64 (72)
45 3tnu_A Keratin, type I cytoske 79.9 22 0.00074 30.0 11.2 29 222-250 43-71 (131)
46 1l8d_A DNA double-strand break 78.6 24 0.00083 28.3 12.8 32 269-300 67-98 (112)
47 3uux_B Mitochondrial division 77.0 25 0.00086 33.3 11.6 73 221-293 153-225 (242)
48 3ajw_A Flagellar FLIJ protein; 76.8 31 0.0011 28.6 12.9 54 219-272 76-129 (150)
49 1ci6_A Transcription factor AT 76.2 9.6 0.00033 28.6 7.0 37 223-259 22-58 (63)
50 3mq7_A Bone marrow stromal ant 75.2 38 0.0013 28.9 11.4 22 233-254 73-94 (121)
51 3cvf_A Homer-3, homer protein 74.2 30 0.001 27.5 9.7 37 221-257 17-53 (79)
52 1fxk_A Prefoldin; archaeal pro 73.2 18 0.00061 28.7 8.4 33 221-253 69-101 (107)
53 3swk_A Vimentin; cytoskeleton, 73.0 33 0.0011 27.2 11.5 37 266-302 49-85 (86)
54 3fpp_A Macrolide-specific effl 72.8 14 0.00047 34.7 8.9 26 275-300 123-148 (341)
55 2ve7_A Kinetochore protein HEC 72.3 13 0.00046 35.8 8.8 24 230-253 184-207 (315)
56 1m1j_C Fibrinogen gamma chain; 72.2 56 0.0019 32.9 13.6 16 330-345 203-218 (409)
57 2b5u_A Colicin E3; high resolu 72.1 53 0.0018 34.3 13.4 20 233-252 316-335 (551)
58 3cve_A Homer protein homolog 1 71.6 34 0.0012 26.7 11.1 40 219-258 9-48 (72)
59 1deq_A Fibrinogen (alpha chain 71.5 82 0.0028 31.7 14.3 41 289-336 181-222 (390)
60 2oto_A M protein; helical coil 71.4 49 0.0017 28.4 14.3 58 180-243 26-83 (155)
61 4dk0_A Putative MACA; alpha-ha 70.8 23 0.00079 33.4 10.0 29 272-300 121-149 (369)
62 3viq_B Mating-type switching p 70.7 4.4 0.00015 32.8 4.1 11 263-273 45-55 (85)
63 3mq9_A Bone marrow stromal ant 70.4 85 0.0029 30.8 16.6 33 269-301 439-471 (471)
64 2i1j_A Moesin; FERM, coiled-co 69.6 2.2 7.6E-05 44.6 2.8 17 187-203 332-348 (575)
65 2fup_A Hypothetical protein PA 69.4 34 0.0012 28.6 9.8 114 187-303 11-134 (157)
66 2avr_X Adhesion A; antiparalle 69.3 28 0.00095 29.7 9.0 16 282-297 73-88 (119)
67 3cvf_A Homer-3, homer protein 69.0 41 0.0014 26.7 9.4 33 223-255 5-37 (79)
68 3jsv_C NF-kappa-B essential mo 68.8 47 0.0016 27.2 10.3 22 279-300 67-88 (94)
69 1ik9_A DNA repair protein XRCC 68.2 47 0.0016 30.5 11.1 7 152-158 123-129 (213)
70 2e7s_A RAB guanine nucleotide 68.1 34 0.0012 29.7 9.5 14 287-300 117-130 (135)
71 1wt6_A Myotonin-protein kinase 67.8 22 0.00075 28.5 7.5 38 218-255 32-69 (81)
72 3ibp_A Chromosome partition pr 67.8 62 0.0021 31.6 12.2 75 178-252 26-104 (302)
73 3iv1_A Tumor susceptibility ge 67.2 45 0.0015 26.4 10.2 30 228-257 43-72 (78)
74 1m1j_B Fibrinogen beta chain; 66.4 1.2E+02 0.0042 31.1 15.2 27 178-204 88-114 (464)
75 4etp_A Kinesin-like protein KA 66.0 18 0.00061 36.1 8.4 8 336-343 123-130 (403)
76 3ol1_A Vimentin; structural ge 65.3 59 0.002 27.0 16.5 29 175-203 19-47 (119)
77 3hhm_B NISH2 P85alpha; PI3KCA, 64.2 94 0.0032 30.8 13.2 61 218-285 199-259 (373)
78 1hjb_A Ccaat/enhancer binding 64.0 22 0.00076 28.6 7.0 36 223-258 35-70 (87)
79 3opc_A Uncharacterized protein 64.0 66 0.0022 27.1 13.6 109 187-301 12-131 (154)
80 2v4h_A NF-kappa-B essential mo 63.8 66 0.0022 27.1 12.6 23 281-303 84-106 (110)
81 4etp_A Kinesin-like protein KA 63.5 22 0.00074 35.6 8.4 17 228-244 14-30 (403)
82 1t2k_D Cyclic-AMP-dependent tr 62.8 23 0.00079 26.0 6.5 34 225-258 23-56 (61)
83 3u59_A Tropomyosin beta chain; 61.5 62 0.0021 26.0 15.2 70 228-297 27-96 (101)
84 3qne_A Seryl-tRNA synthetase, 61.4 28 0.00097 35.8 9.1 87 216-313 32-120 (485)
85 2l5g_B Putative uncharacterize 60.4 21 0.00073 25.2 5.5 29 229-257 7-35 (42)
86 3u06_A Protein claret segregat 60.2 24 0.00081 35.5 8.1 31 221-251 7-37 (412)
87 1wle_A Seryl-tRNA synthetase; 60.2 57 0.002 33.6 11.1 37 217-253 70-106 (501)
88 2w83_C C-JUN-amino-terminal ki 59.6 64 0.0022 25.5 9.8 40 214-253 34-73 (77)
89 2zqm_A Prefoldin beta subunit 59.6 65 0.0022 25.7 10.9 21 222-242 18-38 (117)
90 2dq0_A Seryl-tRNA synthetase; 59.1 47 0.0016 33.7 10.2 89 215-312 29-117 (455)
91 4dk0_A Putative MACA; alpha-ha 58.8 27 0.00091 33.0 7.9 33 266-298 122-154 (369)
92 2i1j_A Moesin; FERM, coiled-co 57.3 15 0.00053 38.3 6.4 11 149-159 274-284 (575)
93 3lss_A Seryl-tRNA synthetase; 57.3 51 0.0017 33.9 10.1 37 216-252 36-72 (484)
94 3fpp_A Macrolide-specific effl 57.2 54 0.0019 30.5 9.7 31 268-298 123-153 (341)
95 3o0z_A RHO-associated protein 57.1 1.1E+02 0.0037 27.4 18.9 25 180-204 10-34 (168)
96 3swk_A Vimentin; cytoskeleton, 56.8 71 0.0024 25.2 10.3 14 231-244 7-20 (86)
97 2wt7_A Proto-oncogene protein 56.4 34 0.0012 25.4 6.5 32 226-257 25-56 (63)
98 4emc_A Monopolin complex subun 56.1 51 0.0017 30.2 8.8 32 295-326 80-121 (190)
99 3etw_A Adhesin A; antiparallel 56.1 67 0.0023 27.3 9.0 9 287-295 78-86 (119)
100 3nmd_A CGMP dependent protein 55.6 48 0.0017 25.9 7.4 12 290-301 57-68 (72)
101 1gu4_A CAAT/enhancer binding p 53.0 31 0.001 27.2 6.0 36 223-258 35-70 (78)
102 3mq7_A Bone marrow stromal ant 52.8 1.1E+02 0.0037 26.1 13.5 27 226-252 73-99 (121)
103 3qh9_A Liprin-beta-2; coiled-c 52.1 89 0.003 24.9 10.4 35 221-255 23-57 (81)
104 3qne_A Seryl-tRNA synthetase, 52.0 78 0.0027 32.6 10.5 24 336-359 310-333 (485)
105 1g6u_A Domain swapped dimer; d 51.7 60 0.0021 22.9 6.8 25 225-249 21-45 (48)
106 3tnu_B Keratin, type II cytosk 51.6 1E+02 0.0036 25.6 13.0 60 223-285 35-94 (129)
107 2xnx_M M protein, M1-BC1; cell 51.4 93 0.0032 27.4 9.3 20 289-308 96-115 (146)
108 1go4_E MAD1 (mitotic arrest de 51.2 27 0.00094 28.8 5.6 30 225-254 13-42 (100)
109 1yke_B RNA polymerase II holoe 51.0 1.1E+02 0.0038 26.6 9.9 31 211-241 86-116 (151)
110 3ljm_A Coil Ser L9C; de novo d 50.9 26 0.0009 22.7 4.3 24 234-257 4-27 (31)
111 2p22_A Suppressor protein STP2 50.6 1.4E+02 0.0048 26.8 12.6 78 219-296 51-138 (174)
112 4dzn_A Coiled-coil peptide CC- 50.4 34 0.0012 22.5 4.8 20 229-248 7-26 (33)
113 2dq0_A Seryl-tRNA synthetase; 50.3 86 0.0029 31.7 10.4 23 337-359 315-337 (455)
114 2yy0_A C-MYC-binding protein; 50.0 27 0.00091 25.6 4.8 27 221-247 23-49 (53)
115 2v66_B Nuclear distribution pr 49.5 1.2E+02 0.004 25.5 15.6 84 179-267 6-89 (111)
116 4h22_A Leucine-rich repeat fli 49.4 1.1E+02 0.0039 25.3 9.4 24 227-250 33-56 (103)
117 3s9g_A Protein hexim1; cyclin 49.2 1.1E+02 0.0039 25.3 9.1 43 216-258 43-85 (104)
118 3viq_B Mating-type switching p 49.2 21 0.00072 28.8 4.5 27 228-254 5-31 (85)
119 1ci6_A Transcription factor AT 49.1 41 0.0014 25.1 5.9 29 217-245 30-58 (63)
120 2f1m_A Acriflavine resistance 48.7 1.1E+02 0.0036 27.7 9.9 23 275-297 107-129 (277)
121 2aze_B Transcription factor E2 48.6 27 0.00093 28.8 5.3 33 226-258 8-40 (106)
122 1jnm_A Proto-oncogene C-JUN; B 48.1 23 0.00078 26.2 4.4 32 226-257 24-55 (62)
123 1ykh_B RNA polymerase II holoe 48.0 1.3E+02 0.0044 25.5 10.4 31 211-241 86-116 (132)
124 1go4_E MAD1 (mitotic arrest de 47.6 84 0.0029 25.9 8.0 35 166-204 6-40 (100)
125 2qyw_A Vesicle transport throu 47.0 1.1E+02 0.0038 24.6 10.2 26 232-257 50-75 (102)
126 4dzn_A Coiled-coil peptide CC- 46.7 43 0.0015 22.0 4.8 27 232-258 3-29 (33)
127 1gmj_A ATPase inhibitor; coile 46.6 93 0.0032 25.0 7.9 11 230-240 57-67 (84)
128 1ses_A Seryl-tRNA synthetase; 46.5 1.2E+02 0.0042 30.2 10.7 70 175-250 28-97 (421)
129 2pms_C Pneumococcal surface pr 46.3 1.3E+02 0.0044 25.8 9.2 78 180-258 10-88 (125)
130 1a93_B MAX protein, coiled coi 46.2 31 0.0011 23.4 4.2 26 226-251 9-34 (34)
131 1lwu_C Fibrinogen gamma chain; 46.1 61 0.0021 31.7 8.2 15 331-345 126-140 (323)
132 3u06_A Protein claret segregat 45.3 57 0.002 32.7 8.1 31 226-256 5-35 (412)
133 3ter_A Mammalian stromal inter 44.8 1.2E+02 0.0043 26.2 9.0 44 271-314 43-87 (136)
134 1fmh_A General control protein 44.2 36 0.0012 22.4 4.2 11 236-246 6-16 (33)
135 1f5n_A Interferon-induced guan 43.9 3E+02 0.01 28.7 20.4 17 286-302 566-582 (592)
136 2eqb_B RAB guanine nucleotide 43.5 1.4E+02 0.0046 24.6 12.6 17 235-251 44-60 (97)
137 1deq_A Fibrinogen (alpha chain 43.4 2.6E+02 0.0089 28.1 12.3 18 344-361 184-201 (390)
138 1x79_B RAB GTPase binding effe 43.2 1.5E+02 0.005 24.9 11.7 33 256-288 60-92 (112)
139 4gkw_A Spindle assembly abnorm 42.9 1.7E+02 0.0058 25.6 11.5 21 224-244 18-38 (167)
140 1fxk_C Protein (prefoldin); ar 42.9 1.4E+02 0.0048 24.5 10.5 81 176-256 15-127 (133)
141 1hjb_A Ccaat/enhancer binding 42.4 49 0.0017 26.5 5.8 34 215-248 41-74 (87)
142 1uix_A RHO-associated kinase; 42.3 1.2E+02 0.0041 23.6 10.6 32 231-262 4-35 (71)
143 4h22_A Leucine-rich repeat fli 41.3 1.5E+02 0.0052 24.6 10.8 26 226-251 25-50 (103)
144 1m1j_C Fibrinogen gamma chain; 40.8 2.9E+02 0.01 27.7 14.2 31 271-301 103-133 (409)
145 1ses_A Seryl-tRNA synthetase; 40.4 77 0.0026 31.7 8.2 33 217-249 28-60 (421)
146 1f5n_A Interferon-induced guan 40.3 3.4E+02 0.012 28.3 19.3 14 172-185 379-392 (592)
147 3jsv_C NF-kappa-B essential mo 40.3 1.5E+02 0.0052 24.2 10.9 18 285-302 66-83 (94)
148 2yy0_A C-MYC-binding protein; 40.1 46 0.0016 24.2 4.8 27 226-252 21-47 (53)
149 3i00_A HIP-I, huntingtin-inter 39.7 1.7E+02 0.0058 24.6 11.6 20 175-194 14-33 (120)
150 3etv_A Protein transport prote 39.6 92 0.0031 31.0 8.3 87 181-269 14-102 (355)
151 3cve_A Homer protein homolog 1 39.6 1.3E+02 0.0045 23.3 11.1 27 229-255 5-31 (72)
152 3etw_A Adhesin A; antiparallel 38.6 1.8E+02 0.0062 24.6 11.9 11 294-304 102-112 (119)
153 1t2k_D Cyclic-AMP-dependent tr 37.7 89 0.0031 22.8 6.2 22 222-243 34-55 (61)
154 1t6f_A Geminin; coiled-coil, c 37.5 60 0.002 22.3 4.6 24 234-257 10-33 (37)
155 3i00_A HIP-I, huntingtin-inter 37.4 1.8E+02 0.0063 24.4 11.7 15 222-236 20-34 (120)
156 4e61_A Protein BIM1; EB1-like 37.1 1.8E+02 0.0062 24.2 11.3 40 231-270 11-50 (106)
157 1m1j_B Fibrinogen beta chain; 36.9 3.6E+02 0.012 27.6 15.0 16 330-345 266-281 (464)
158 1wle_A Seryl-tRNA synthetase; 36.5 2.7E+02 0.0094 28.5 11.7 25 218-242 78-102 (501)
159 1nlw_A MAD protein, MAX dimeri 36.1 46 0.0016 26.0 4.6 28 221-248 51-78 (80)
160 1nkp_B MAX protein, MYC proto- 35.9 41 0.0014 26.0 4.2 28 221-248 51-78 (83)
161 2dq3_A Seryl-tRNA synthetase; 35.5 24 0.00082 35.4 3.6 90 214-312 27-116 (425)
162 2wt7_A Proto-oncogene protein 35.5 1.1E+02 0.0037 22.6 6.4 21 222-242 35-55 (63)
163 2ocy_A RAB guanine nucleotide 35.2 2.3E+02 0.008 24.9 16.9 26 268-293 117-142 (154)
164 1nkp_A C-MYC, MYC proto-oncoge 34.1 58 0.002 25.7 4.9 31 220-250 55-85 (88)
165 3thf_A Protein shroom; coiled- 33.5 2.8E+02 0.0095 25.3 16.0 40 265-304 147-186 (190)
166 2oto_A M protein; helical coil 33.5 2.2E+02 0.0077 24.2 19.0 22 181-202 34-55 (155)
167 1s1c_X RHO-associated, coiled- 33.4 1.7E+02 0.0058 22.7 9.9 34 228-261 3-36 (71)
168 3rrk_A V-type ATPase 116 kDa s 32.4 1.6E+02 0.0055 27.9 8.7 47 221-269 96-143 (357)
169 3a2a_A Voltage-gated hydrogen 32.0 1.6E+02 0.0054 22.0 6.7 34 219-252 13-46 (58)
170 3iox_A AGI/II, PA; alpha helix 31.8 4.5E+02 0.016 27.2 16.3 70 232-301 35-108 (497)
171 3tq7_B Microtubule-associated 31.6 56 0.0019 26.0 4.4 27 177-203 9-35 (82)
172 1joc_A EEA1, early endosomal a 30.7 2.3E+02 0.0079 23.5 9.6 8 233-240 20-27 (125)
173 3l4q_C Phosphatidylinositol 3- 29.1 3.1E+02 0.011 24.5 15.1 52 226-284 98-149 (170)
174 4e61_A Protein BIM1; EB1-like 28.7 63 0.0021 27.0 4.4 26 178-203 27-52 (106)
175 2p2u_A HOST-nuclease inhibitor 28.7 3E+02 0.01 24.1 13.4 28 291-327 71-99 (171)
176 3ra3_B P2F; coiled coil domain 28.7 47 0.0016 21.1 2.7 14 226-239 9-22 (28)
177 2xnx_M M protein, M1-BC1; cell 28.6 1E+02 0.0036 27.0 5.9 30 228-257 77-106 (146)
178 2dq3_A Seryl-tRNA synthetase; 28.6 71 0.0024 31.9 5.6 24 337-360 294-317 (425)
179 2wt7_B Transcription factor MA 28.4 2.3E+02 0.008 22.8 9.4 27 264-290 60-86 (90)
180 1fxk_A Prefoldin; archaeal pro 28.1 2.1E+02 0.0072 22.2 11.7 17 230-246 71-87 (107)
181 3rrk_A V-type ATPase 116 kDa s 27.9 1.2E+02 0.004 28.8 6.9 34 213-246 95-128 (357)
182 3lss_A Seryl-tRNA synthetase; 27.9 2.7E+02 0.0092 28.6 9.9 25 226-250 113-137 (484)
183 4b4t_K 26S protease regulatory 27.9 95 0.0032 31.2 6.4 7 332-338 168-174 (428)
184 2f1m_A Acriflavine resistance 27.6 2.1E+02 0.0071 25.7 8.2 28 274-301 99-126 (277)
185 2dgc_A Protein (GCN4); basic d 27.5 93 0.0032 23.2 4.8 27 226-252 32-58 (63)
186 1lwu_C Fibrinogen gamma chain; 27.4 1.2E+02 0.004 29.7 6.8 11 230-240 25-35 (323)
187 2p22_A Suppressor protein STP2 27.3 3.1E+02 0.011 24.5 9.0 41 261-301 51-91 (174)
188 2aze_B Transcription factor E2 27.1 1.1E+02 0.0038 25.1 5.7 21 299-319 56-76 (106)
189 3gp4_A Transcriptional regulat 27.1 2.6E+02 0.0088 23.5 8.2 28 223-250 87-114 (142)
190 2v66_B Nuclear distribution pr 26.8 2.8E+02 0.0095 23.1 13.2 36 227-262 38-73 (111)
191 2gd5_A Charged multivesicular 26.7 3.2E+02 0.011 23.8 11.1 40 213-252 10-49 (179)
192 3okq_A BUD site selection prot 26.5 3.2E+02 0.011 23.8 14.5 56 220-275 57-112 (141)
193 1wt6_A Myotonin-protein kinase 26.2 2.5E+02 0.0085 22.4 8.5 6 181-186 15-20 (81)
194 1zxa_A CGMP-dependent protein 26.1 1.2E+02 0.0041 23.3 5.2 25 230-254 24-48 (67)
195 3tkl_B LIDA protein, substrate 25.8 1.4E+02 0.0047 28.2 6.5 43 178-220 44-88 (267)
196 1zhc_A Hypothetical protein HP 25.7 1.3E+02 0.0043 23.2 5.4 40 221-261 21-60 (76)
197 1x79_B RAB GTPase binding effe 25.7 2.9E+02 0.01 23.1 11.9 18 181-198 18-35 (112)
198 4dci_A Uncharacterized protein 25.6 3.4E+02 0.012 23.7 11.1 24 229-252 34-57 (150)
199 3ga8_A HTH-type transcriptiona 25.2 11 0.00036 29.0 -0.9 21 9-30 25-45 (78)
200 2eqb_B RAB guanine nucleotide 24.8 2.9E+02 0.0098 22.6 14.0 25 179-203 8-32 (97)
201 3plt_A Sphingolipid long chain 24.7 4.4E+02 0.015 24.7 16.3 72 181-255 78-155 (234)
202 2ve7_C Kinetochore protein NUF 24.4 12 0.0004 35.2 -0.9 62 213-274 144-205 (250)
203 4ani_A Protein GRPE; chaperone 24.3 2.5E+02 0.0086 25.8 8.1 27 222-248 64-90 (213)
204 1fzc_C Fibrin; blood coagulati 24.0 45 0.0016 32.6 3.1 14 332-345 118-131 (319)
205 1lrz_A FEMA, factor essential 23.6 2.3E+02 0.0079 27.6 8.2 38 303-341 311-353 (426)
206 3bbp_D GRIP and coiled-coil do 23.6 51 0.0018 25.7 2.7 33 229-261 34-66 (71)
207 3gp4_A Transcriptional regulat 23.3 3.3E+02 0.011 22.8 10.1 15 237-251 87-101 (142)
208 2b9c_A Striated-muscle alpha t 23.0 3.6E+02 0.012 23.2 15.7 103 182-290 23-125 (147)
209 1gu4_A CAAT/enhancer binding p 22.9 1.7E+02 0.0057 22.9 5.7 28 217-244 43-70 (78)
210 2zdi_C Prefoldin subunit alpha 22.9 3.4E+02 0.012 22.8 8.6 37 220-256 101-137 (151)
211 2gd5_A Charged multivesicular 22.9 3.7E+02 0.013 23.3 13.3 25 214-238 25-49 (179)
212 1gmj_A ATPase inhibitor; coile 22.7 3E+02 0.01 22.0 9.3 31 227-257 47-77 (84)
213 2l5g_B Putative uncharacterize 22.3 2E+02 0.0069 20.3 5.3 25 228-252 13-37 (42)
214 2o3g_A Putative protein; APC85 22.1 14 0.00048 29.0 -0.8 26 305-330 30-61 (92)
215 1jnm_A Proto-oncogene C-JUN; B 21.8 94 0.0032 22.8 3.9 16 224-239 36-51 (62)
216 2k48_A Nucleoprotein; viral pr 21.7 3.5E+02 0.012 22.5 9.0 19 228-246 39-57 (107)
217 2nqw_A CBS domain protein; PFA 21.4 8.5 0.00029 30.3 -2.2 16 315-330 44-62 (93)
218 3tnf_B LIDA, RAS-related prote 21.4 2.6E+02 0.0088 27.5 7.7 47 176-222 25-73 (384)
219 2fic_A Bridging integrator 1; 21.4 4.3E+02 0.015 23.4 13.8 10 173-182 109-118 (251)
220 2wvr_A Geminin; DNA replicatio 21.4 3.4E+02 0.012 25.1 8.2 61 198-260 98-158 (209)
221 3ghg_C Fibrinogen gamma chain; 21.2 6.4E+02 0.022 25.4 13.7 16 330-345 203-218 (411)
222 2dgc_A Protein (GCN4); basic d 21.1 1.6E+02 0.0055 21.9 5.0 24 231-254 30-53 (63)
223 3ibp_A Chromosome partition pr 21.0 5.8E+02 0.02 24.8 11.4 24 278-301 81-104 (302)
224 3oa7_A Head morphogenesis prot 20.9 4.9E+02 0.017 23.9 9.9 41 217-257 30-70 (206)
225 2no2_A HIP-I, huntingtin-inter 20.7 3.5E+02 0.012 22.1 14.4 27 274-300 76-102 (107)
226 1lrz_A FEMA, factor essential 20.7 2E+02 0.0067 28.1 7.0 9 314-322 314-322 (426)
227 4akg_A Glutathione S-transfera 20.5 4.6E+02 0.016 32.7 11.3 65 180-244 2143-2215(2695)
228 2xdj_A Uncharacterized protein 20.5 3.2E+02 0.011 21.5 9.7 35 228-262 24-58 (83)
229 2xv5_A Lamin-A/C; structural p 20.3 3E+02 0.01 21.2 8.0 18 229-246 10-27 (74)
230 4etp_B Spindle POLE BODY-assoc 20.2 2.7E+02 0.0094 27.4 7.7 50 235-291 7-56 (333)
231 3caz_A BAR protein; thermo-aci 20.1 2.9E+02 0.0098 25.7 7.4 13 291-303 165-177 (294)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=5.3e-49 Score=366.11 Aligned_cols=109 Identities=45% Similarity=0.885 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhh
Q 016664 276 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (385)
Q Consensus 276 ~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (385)
+++++|++|+++||++++.|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||++
T Consensus 1 ~~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~ 80 (210)
T 4ddp_A 1 LELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANK 80 (210)
T ss_dssp -------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeeeecCCcceeeccCC--CcccC
Q 016664 356 FRPKFPYRIKIIPMGSYPRIMDSNN--NTYEL 385 (385)
Q Consensus 356 l~l~F~YrykLvPmGS~SkI~~~~~--~tyel 385 (385)
++++|+ +|+||||||||+|++..+ .+|+|
T Consensus 81 l~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~L 111 (210)
T 4ddp_A 81 MGLKFQ-RYRLVPYGNHSYLESLTDKSKELPL 111 (210)
T ss_dssp HTCCCS-SEEEECCGGGCEEEESSCTTCCEES
T ss_pred cCCCcc-ceeEEecCCcceeeEecCCCeEEec
Confidence 999998 555999999999999754 47776
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-41 Score=314.68 Aligned_cols=75 Identities=43% Similarity=0.739 Sum_probs=72.6
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHhhcCCCCccceeeeecCCcceeec
Q 016664 302 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD 377 (385)
Q Consensus 302 tNV~nd~F~I~hdG~fGTINglRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~l~F~YrykLvPmGS~SkI~~ 377 (385)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||||+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~ 75 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKK 75 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEE
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEee
Confidence 799999999999999999999999999999999999999999999999999999999998 344999999999999
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.77 E-value=6.6e-18 Score=140.09 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~ 292 (385)
+.+.+++..++.+|.+|.++|++||++++.++++|..++.+..+|+.+|.+||++||.|++++++|+++++||++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 016664 293 QAHLELLKRT 302 (385)
Q Consensus 293 ~~qLdkL~kt 302 (385)
+.||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.37 E-value=7.6e-08 Score=64.63 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.4
Q ss_pred CCCccchHHHHHHHHHhhcCCCCcCCc
Q 016664 142 NSGFHSTITVLKRAFEIATSQTQVEQP 168 (385)
Q Consensus 142 ~~~lss~i~~l~~lFdIlSs~s~IDhP 168 (385)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 356899999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.73 E-value=0.17 Score=44.41 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (385)
+++.+..+..+++.+..-+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.38 E-value=0.48 Score=43.49 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+...+..++++++.|-+.|+..=+.|+
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777666666655554
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.19 E-value=0.58 Score=40.95 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 016664 183 KEVDDVTRDIEAYE 196 (385)
Q Consensus 183 ~qle~~~~E~d~Y~ 196 (385)
.++..+..+...+.
T Consensus 27 ~~l~~l~~~~~~~~ 40 (284)
T 1c1g_A 27 ADKKAAEDRSKQLE 40 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 8
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=96.16 E-value=0.28 Score=40.23 Aligned_cols=88 Identities=15% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 191 DIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (385)
Q Consensus 191 E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~ 270 (385)
++.+-..-|+.|+.+ +..+..++..|+.+...+..+|..++.+...++.+-.....+...+.-.- ..
T Consensus 5 ~~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql-------~e 71 (96)
T 3q8t_A 5 DSEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ-------LE 71 (96)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HH
Confidence 344555566666542 46678899999999999999999999999999888888877766655433 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016664 271 FQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 271 ~q~ql~~~~ee~~sl~~q~~~ 291 (385)
|+-++..+..+.+-..++++.
T Consensus 72 ~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 72 LDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.77 E-value=0.99 Score=40.14 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.++.+.+.|...|++.|.--+........|+.+..++++.=...=..|-..+..|-....++.++.+.+.+..+.+.+|+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 35555555555555555555555555555555554444333333344555666677777777788888888888888887
Q ss_pred c
Q 016664 301 R 301 (385)
Q Consensus 301 k 301 (385)
+
T Consensus 154 ~ 154 (155)
T 2efr_A 154 K 154 (155)
T ss_dssp T
T ss_pred c
Confidence 6
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.52 E-value=0.12 Score=58.06 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
++.++..|+++.+++++++..+.+|.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.46 E-value=1.4 Score=41.21 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=8.0
Q ss_pred eeecCCcceeec
Q 016664 366 IIPMGSYPRIMD 377 (385)
Q Consensus 366 LvPmGS~SkI~~ 377 (385)
++.|=+|.+|.-
T Consensus 222 Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 222 MITCPYCGRILY 233 (256)
T ss_dssp CEECTTTCCEEE
T ss_pred EEECCCCCeeEE
Confidence 666777777754
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.28 E-value=1.8 Score=40.40 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 016664 267 EFNNFQFQLIAHQEERDAISSKIE-VSQAHLELLKR 301 (385)
Q Consensus 267 e~n~~q~ql~~~~ee~~sl~~q~~-~~~~qLdkL~k 301 (385)
....++.++..+..++..+...+. -....-+++++
T Consensus 151 ~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 151 EVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 333333444444444444433332 23345566665
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.10 E-value=0.33 Score=49.44 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 262 ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 262 ~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
+++-++.+..+.++..+++|+..++.+++..+.++..|++.
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 34444444455555555566666666666665555555443
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.09 E-value=0.3 Score=42.45 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~ 282 (385)
+..|+.++..+-..|.++++++++|...+..++..++.+...+.++-+++-++++.++.++..++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777888888888888888888888888888888888887777777778888877777666544
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.92 E-value=2.1 Score=39.22 Aligned_cols=100 Identities=10% Similarity=0.232 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 016664 187 DVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELE 261 (385)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~-~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l----~~eE 261 (385)
....|+..|..........-... ..-++|...-..| |..|+++|+.+|+....+......+..+.... +..-
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL---E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL---EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766544443221100 0012333322222 23345555555555555555555555444332 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 262 ERYWQEFNNFQFQLIAHQEERDAISSKI 289 (385)
Q Consensus 262 ~~~w~e~n~~q~ql~~~~ee~~sl~~q~ 289 (385)
.+.-+..|.++.++..+....+.+..++
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557777777777777776665554
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.57 E-value=0.84 Score=56.62 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
+++|.++|++.++..+++.+++.+..++++.=+++-.+|.....+...++++.+..+.+++.|..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555555544455555555555555555555555555544443
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.74 E-value=7.2 Score=35.12 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 016664 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHLE 297 (385)
Q Consensus 243 l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~----~q~~~~~~qLd 297 (385)
+...+..|+.+.+++..-+.+.--+...++-.+..++.+..+++ -.+..++..++
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44455556666666666666666777777777777777777666 44445554443
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.58 E-value=3.4 Score=51.46 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 171 ~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
.|-...-...|.++..++...++.|..=|.||..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566677777777888888888888764
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.41 E-value=3.8 Score=34.60 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 278 HQEERDAISSKIEVSQAHLELL 299 (385)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL 299 (385)
...+.+.+..++.+.+.++.+|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 4556666677777777766655
No 20
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.37 E-value=7.4 Score=34.53 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
+....++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666655555555555555
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.95 E-value=4.6 Score=40.18 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 248 ~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
+....+.+++.++.++.-++..++..++.+..
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 33333333333333333333334444333333
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.32 E-value=5.9 Score=31.64 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
++..++.+...+...++..++.+.++......+. .+.|+++.++.+.++.+..+.++-.....+|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~--------------~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLL--------------EQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455445444444444444433333 44455555566666666665555444444444
Q ss_pred HH
Q 016664 298 LL 299 (385)
Q Consensus 298 kL 299 (385)
-|
T Consensus 81 el 82 (89)
T 3bas_A 81 RL 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.66 E-value=7.1 Score=31.58 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 260 eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
...-|..+.+.++.++.....++..+..+++..+..++.+++
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445588888999999999999999999999988888888874
No 24
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.64 E-value=7.1 Score=31.58 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 264 ~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
+..+...++.++..+.++...++..+.....++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.24 E-value=6.6 Score=30.67 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.++..+++.+..++++++.++.++..++..|+.-.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777788777778777777776544
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.67 E-value=7.4 Score=33.65 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ 279 (385)
.+-.|.-++..+.+.++.+.+++..|+.+++.+...+....+..-++...++.+..+++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777666655555444444444444443333333
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.48 E-value=17 Score=35.99 Aligned_cols=40 Identities=5% Similarity=-0.061 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 251 ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 251 e~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
+...+...++++++-++.+.++..+.++..+.....+.|.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3333333334433334444444444444444444444443
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.09 E-value=11 Score=30.71 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
++.+++.+..+..|.+.+..-...++... ........+++.|...|...+..+|.++..+...+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666554444433211 11122233345555555555555555555554444433
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.67 E-value=11 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
++.+++....+......+++.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555544
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.25 E-value=14 Score=32.85 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le 251 (385)
.|..|++++..+...+.+++
T Consensus 69 ~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.93 E-value=8.5 Score=40.28 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeee
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV~nd~F~I~h 313 (385)
.....||..|.+...+.+-|+..|+ .||+.-|-.-.-+-+|.|.+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId---iqirsCKgsCsr~~~~~vd~ 175 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID---IKIRSCRGSCSRALAREVDL 175 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGTBSCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccchheeecch
Confidence 3344444444444444444433332 34555555554444554443
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.83 E-value=13 Score=30.29 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
.+...++.++....++..++..|..+...++.+=+.+...+...+..|.+........++.....+..+..
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666665555544555555555555555444444444444444444433
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.55 E-value=15 Score=30.75 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=6.0
Q ss_pred HHHHHHHHHhc
Q 016664 194 AYEACLQRLEG 204 (385)
Q Consensus 194 ~Y~~fL~~L~~ 204 (385)
.|...+..|+.
T Consensus 17 ~ye~~I~~LR~ 27 (119)
T 3ol1_A 17 LYEEEMRELRR 27 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555554
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.22 E-value=14 Score=29.99 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQ 200 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~ 200 (385)
++.+++.+..+..|.+.+..-..
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae 26 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443333
No 35
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.14 E-value=14 Score=38.43 Aligned_cols=94 Identities=19% Similarity=0.338 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (385)
Q Consensus 189 ~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~ 268 (385)
+.+..+|+.-|.|+++...+ -.++..+.+.++..+-++..+|.+.+++..+...+.-+ ++.++.++.-+.|-+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye---~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYE---AKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45666788888888754222 12333334444445555555566666555544433322 22233333334555566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 269 NNFQFQLIAHQEERDAISS 287 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~ 287 (385)
.+++.+|...++++..+..
T Consensus 83 AeY~~kl~aYe~~~~~~~k 101 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKA 101 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666654433
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.15 E-value=13 Score=29.05 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.+++.+..+..|.+.+..-+..++... .+..+...+++.|...|...+..+|.+...+...+....
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444333210 111222333445555555555555555555544444443
No 37
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=83.92 E-value=14 Score=30.74 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 209 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 209 ~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.++..++..|-..||.....++.+-..+..........+.+|+.|..+|.
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34566776666666666666655554444444444445555555554443
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.77 E-value=12 Score=36.90 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+.++++|.|...++.+|++++++.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444443
No 39
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.98 E-value=12 Score=30.21 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
.|+...+.+..+++.++++...+..++.+++.+.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666666666666666655443
No 40
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.94 E-value=29 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
..++.....++.++.-....++..+.||..|+.
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455566677777777765
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.93 E-value=48 Score=34.76 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhccccCC
Q 016664 288 KIEVSQAHLELLKRTNVLN 306 (385)
Q Consensus 288 q~~~~~~qLdkL~ktNV~n 306 (385)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4777888999999999988
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.81 E-value=24 Score=29.61 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
|+.++......|..+|+.+...++.|...|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444555555555555555555444443
No 43
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.16 E-value=31 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
.+..|+.|...|..+|.+++.+..+..+.+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e 99 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTE 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555544444443333333
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.11 E-value=6 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+...+.+-.+|....+..|+++|++..+.+++|..|+.+..
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455556666677777777777777777766543
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=79.85 E-value=22 Score=30.00 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
+......|..+|+.+...++.+...|.++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333444444444444444444444333
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=78.56 E-value=24 Score=28.32 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
..++.++..+..+...+..++......++.|+
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 47
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=77.03 E-value=25 Score=33.28 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
.|..+-..+..+|+-|+-++.-...||.++..++++|+..-+...+....++.+-..+++++.-++.+++..+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777878777777888888888888888877777777777777777777777777766665544
No 48
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=76.78 E-value=31 Score=28.59 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 272 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q 272 (385)
+..|..........+..++.+.+.....+.+...+.+.++.+.++...++....
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~ 129 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAE 129 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777888888888888888888888888888877776665443
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.20 E-value=9.6 Score=28.60 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~ 259 (385)
..+...|..+.++|+++..+|..++..|+.|...|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888877776655543
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.19 E-value=38 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 233 IEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 233 LeelEke~~~l~~el~~le~e~ 254 (385)
+++|+.|...|+++|.++.++.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=74.20 E-value=30 Score=27.48 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
.+|.+-..|+..+..++.+.+.-..+...++.|.+.+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544444444444444433
No 52
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.24 E-value=18 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
.|+...+.+..+++.++++...+..++.+++..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666777777666666666666543
No 53
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.96 E-value=33 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~kt 302 (385)
.+++.++..+-...--+-.++++++..+..|.-||+.
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556666666666666667888888888889888863
No 54
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=72.75 E-value=14 Score=34.67 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 275 LIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+...+.++.++++++..++.+|+.++
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566666666665443
No 55
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.28 E-value=13 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e 253 (385)
.++++.|+.+.+++.+|+++++.+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555443
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.15 E-value=56 Score=32.94 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=12.1
Q ss_pred CCCcchhhHHHHHHHH
Q 016664 330 KIPVEWDEINAAWGQA 345 (385)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (385)
+-.-.|.|-=.++|..
T Consensus 203 ~F~R~W~~Yk~GFG~~ 218 (409)
T 1m1j_C 203 DFRRNWVQYKEGFGHL 218 (409)
T ss_dssp CCCCCHHHHHHCEEEE
T ss_pred cccCCHHHHHhhhCCc
Confidence 3345799998888876
No 57
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=72.10 E-value=53 Score=34.31 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 233 IEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 233 LeelEke~~~l~~el~~le~ 252 (385)
++..|.+.+++.+||.+.++
T Consensus 316 ~~~Aer~~e~a~ael~~a~k 335 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANE 335 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554433
No 58
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=71.58 E-value=34 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
++.+|.+-..|+..+..++...+.-..+...++.+.+.+-
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555554444444444444443
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.50 E-value=82 Score=31.73 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhccccCCCceeeeecCCeeeeccccCCCCCC-CCcchh
Q 016664 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPK-IPVEWD 336 (385)
Q Consensus 289 ~~~~~~qLdkL~ktNV~nd~F~I~hdG~fGTINglRLGrlp~-~~V~W~ 336 (385)
|+..|.||+.+..+|.+... .+ -++..|..+-+++ +|-+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 45556678888888887642 11 2366677776665 333565
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=71.38 E-value=49 Score=28.44 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l 243 (385)
.+..+-+.+..+.+.|..-+..+... ..++..+...|+..-..|...++++..+...+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666665544443321 12333444445555555555555555544433
No 61
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=70.77 E-value=23 Score=33.45 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 272 QFQLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 272 q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
+.++...+.++.++++++..++.+|+.++
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666666666666554
No 62
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=70.75 E-value=4.4 Score=32.77 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 016664 263 RYWQEFNNFQF 273 (385)
Q Consensus 263 ~~w~e~n~~q~ 273 (385)
+..++||+.+-
T Consensus 45 ~~Lh~YNeiKD 55 (85)
T 3viq_B 45 DLLHTYNEIRD 55 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhHHHH
Confidence 45677877753
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.42 E-value=85 Score=30.81 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 269 n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
..-+....+++.|..-++.+++.+..++++||+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 439 AQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333456777788888889999999999999875
No 64
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=69.60 E-value=2.2 Score=44.63 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016664 187 DVTRDIEAYEACLQRLE 203 (385)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~ 203 (385)
++++++..|..-|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34444555555555444
No 65
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=69.38 E-value=34 Score=28.62 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 016664 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 257 (385)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el---------~~le~e~~~l 257 (385)
.+.++++.|..++.-|+.+..- +..-+ ...+..+-+++..|..+|..+++++..+...+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~-L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQA-LERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 3456777888888877755321 00001 12556677888889999999999888765543 111000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 016664 258 KELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 258 ~~eE~~~w~e~n~~q~ql~~~~ee~~s-l~~q~~~~~~qLdkL~ktN 303 (385)
..+=...|.....+-.++.+.-+.... +...+++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 122235787776666555444444433 4556778888888887643
No 66
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=69.26 E-value=28 Score=29.71 Aligned_cols=16 Identities=31% Similarity=0.328 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016664 282 RDAISSKIEVSQAHLE 297 (385)
Q Consensus 282 ~~sl~~q~~~~~~qLd 297 (385)
-..|..+|.-....||
T Consensus 73 Y~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 73 YQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 67
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=69.03 E-value=41 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+.+-.++.+.|+++|.+...++..+..++....
T Consensus 5 ~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 5 AAEREETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444455666677777777777766666665443
No 68
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.85 E-value=47 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 016664 279 QEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 279 ~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
..+...+..++.+.+.++.+|+
T Consensus 67 ~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 67 VEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHTTSHHHHHHHHHHHTTC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666554
No 69
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=68.17 E-value=47 Score=30.52 Aligned_cols=7 Identities=0% Similarity=0.240 Sum_probs=3.5
Q ss_pred HHHHHHh
Q 016664 152 LKRAFEI 158 (385)
Q Consensus 152 l~~lFdI 158 (385)
+..+||.
T Consensus 123 i~elfd~ 129 (213)
T 1ik9_A 123 IRELIAY 129 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3455554
No 70
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.12 E-value=34 Score=29.70 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHh
Q 016664 287 SKIEVSQAHLELLK 300 (385)
Q Consensus 287 ~q~~~~~~qLdkL~ 300 (385)
..++..+.||..|+
T Consensus 117 ~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 117 MLLDTLTLQLKNLK 130 (135)
T ss_dssp HCC-----------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 71
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=67.83 E-value=22 Score=28.46 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
|+.++...-.....+|.+.|+...+|..+++.++.+.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445555555555555555555554443
No 72
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=67.81 E-value=62 Score=31.57 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhchhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 178 le~Ld~qle~~~~---E~d~Y~~fL~~L~~~~~~~~-~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
.++|+.++..+++ .+-+|...|.+|..+....+ +..++...+......|.++..+..++...++.|+.+|+.|-.
T Consensus 26 ~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 26 QEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666554 45556788888887643333 345665666443333366777777777777777777776654
No 73
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=67.17 E-value=45 Score=26.41 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+|..-+..+++|.++++..+..++.+.+.|
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=66.38 E-value=1.2e+02 Score=31.08 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
.+-|-++-+.+.++.+.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 444545555566666666777776654
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.04 E-value=18 Score=36.12 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 016664 336 DEINAAWG 343 (385)
Q Consensus 336 ~EINAAwG 343 (385)
.+|=...+
T Consensus 123 ~~Vf~~v~ 130 (403)
T 4etp_A 123 VDVFKEVG 130 (403)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34433344
No 76
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.29 E-value=59 Score=27.05 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
..-|..|..+++.+..|+.....-+..+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888777776666554
No 77
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=64.20 E-value=94 Score=30.76 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
|+..+..--+.|...|+++.....+|+++|+...+....++ ++.|.++-++..+...+|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHHH
Confidence 33445555566777777777777777777665555444333 67788888888888777754
No 78
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.99 E-value=22 Score=28.58 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
...+..+..+.++|++|.+.|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677788888888888888888777665554
No 79
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=63.95 E-value=66 Score=27.13 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 016664 187 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 256 (385)
Q Consensus 187 ~~~~E~d~Y~~fL~~L~~~~~~~~~~-e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el---------~~le~e~~~ 256 (385)
.+..+.+.|..++.-|+.+..- +.. -++ ..+..+-++...|...|..+++++..+-..+ .++-..
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~~-L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~--- 86 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETEA-LMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA--- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh---
Confidence 3455677788888877755321 111 222 3556677778888888888888888765442 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 016664 257 FKELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKR 301 (385)
Q Consensus 257 l~~eE~~~w~e~n~~q~ql~~~~ee~~s-l~~q~~~~~~qLdkL~k 301 (385)
...=...|.....+-.+..+.-+.... +..++.+.+.-|+-|+.
T Consensus 87 -~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 -HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111135788776665554444444333 46677788888888873
No 80
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.76 E-value=66 Score=27.06 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 016664 281 ERDAISSKIEVSQAHLELLKRTN 303 (385)
Q Consensus 281 e~~sl~~q~~~~~~qLdkL~ktN 303 (385)
.|.-+.-..+..+.+|..|++-|
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445666777777888877654
No 81
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.46 E-value=22 Score=35.55 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVN 244 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~ 244 (385)
.|.+++++++++.++++
T Consensus 14 ~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.83 E-value=23 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
....|+.+.+.|+.+...|..++..|+.+...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555443
No 83
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.46 E-value=62 Score=26.01 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLd 297 (385)
.+...++.++....++..++..+..+...++.+=+.+...+...+..|......+...++.....+..+.
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666666655555444445555555555444444444444444444444443
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.41 E-value=28 Score=35.85 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~q 295 (385)
..++..|.++-+++..++++|..++..+.++|..++...++.+ ....+...+..++.+++ .++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~----~l~~~~~~l~~~i~~le-------~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAK----DLIAEKEKLSNEKKEII-------EKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4556667777888888888888888888888877654322111 12233334444444444 444444444
Q ss_pred HHHH--hccccCCCceeeee
Q 016664 296 LELL--KRTNVLNDAFPIWH 313 (385)
Q Consensus 296 LdkL--~ktNV~nd~F~I~h 313 (385)
|+.+ +==|+..+.=.|+.
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~ 120 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQ 120 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHhCCCCCCccCCCCC
Confidence 4322 22466666655553
No 85
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.38 E-value=21 Score=25.24 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555544433
No 86
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.22 E-value=24 Score=35.46 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le 251 (385)
.|+.|..+|.+++++++++.+++.++++.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.22 E-value=57 Score=33.62 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
.++..+.++-+++..++++|+.++.++.++|.++...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677888888889999999998888888876543
No 88
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.59 E-value=64 Score=25.55 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (385)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e 253 (385)
|+....+.|-.|...|..||..+..-+.+++..+.+++.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 89
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.56 E-value=65 Score=25.67 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAE 242 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~ 242 (385)
+..+...+..++..++.+..+
T Consensus 18 l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 18 YQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 90
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.08 E-value=47 Score=33.65 Aligned_cols=89 Identities=15% Similarity=0.231 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~ 294 (385)
+..++..|.++-+++..++++|..++.++.++|..+....++. +....+...+..++.+++++...++.++....
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYYL- 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456677788888899999999999999988888765432111 12333444444444444444444444433222
Q ss_pred HHHHHhccccCCCceeee
Q 016664 295 HLELLKRTNVLNDAFPIW 312 (385)
Q Consensus 295 qLdkL~ktNV~nd~F~I~ 312 (385)
|+==|+..+.=.|+
T Consensus 104 ----~~ipN~~~~~vP~g 117 (455)
T 2dq0_A 104 ----WRLPNITHPSVPVG 117 (455)
T ss_dssp ----TTSCCCCCTTSCCC
T ss_pred ----HhCCCCCCccCCCC
Confidence 23346655544444
No 91
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=58.81 E-value=27 Score=33.02 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 266 ~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
..+...+.++...+.++..++++++.++.+|++
T Consensus 122 ~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 122 ATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455556666677777777777777776643
No 92
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=57.34 E-value=15 Score=38.28 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 016664 149 ITVLKRAFEIA 159 (385)
Q Consensus 149 i~~l~~lFdIl 159 (385)
.+..+.|+++.
T Consensus 274 ~~~ak~i~~lc 284 (575)
T 2i1j_A 274 VRVNKRILALC 284 (575)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 44555555443
No 93
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.30 E-value=51 Score=33.93 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
..++..|.++-+++..++++|..++-.+.++|..++.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777778888888888888888888876654
No 94
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=57.24 E-value=54 Score=30.54 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdk 298 (385)
+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3344445555555666666666665555543
No 95
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.11 E-value=1.1e+02 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
.|++|++++..-..+=..--.++++
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK 34 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRK 34 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556666665544444444444443
No 96
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=56.76 E-value=71 Score=25.23 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVN 244 (385)
Q Consensus 231 ~eLeelEke~~~l~ 244 (385)
.+|..+..+.+.+.
T Consensus 7 ~qi~~l~~e~~~l~ 20 (86)
T 3swk_A 7 RQVDQLTNDKARVE 20 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 33333333333333
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.42 E-value=34 Score=25.41 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
...|..+.+.|+.+...|..++..|+.+...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555554444
No 98
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=56.09 E-value=51 Score=30.16 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=18.2
Q ss_pred HHHHHhccccCCCceeeeec----CCeee------eccccCC
Q 016664 295 HLELLKRTNVLNDAFPIWHD----GEFGT------INNFRLG 326 (385)
Q Consensus 295 qLdkL~ktNV~nd~F~I~hd----G~fGT------INglRLG 326 (385)
+|-=|+=.|+.++-=..|+| |.=|+ +--|+||
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~ 121 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLG 121 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEE
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEe
Confidence 45566777888775445544 54441 3347776
No 99
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=56.05 E-value=67 Score=27.28 Aligned_cols=9 Identities=33% Similarity=0.191 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016664 287 SKIEVSQAH 295 (385)
Q Consensus 287 ~q~~~~~~q 295 (385)
.+|.-...+
T Consensus 78 k~Y~~~~ke 86 (119)
T 3etw_A 78 SKYEDALKK 86 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.58 E-value=48 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhc
Q 016664 290 EVSQAHLELLKR 301 (385)
Q Consensus 290 ~~~~~qLdkL~k 301 (385)
...+.+||+++.
T Consensus 57 ~~LqseLDKfrS 68 (72)
T 3nmd_A 57 QMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhhc
Confidence 344444555543
No 101
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.03 E-value=31 Score=27.17 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
...+..+....++|++|...|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888888888888877766554
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.79 E-value=1.1e+02 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
.++|..||+.|..++....++++.|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 103
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.11 E-value=89 Score=24.94 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
.|-+|.+.|.-.++++|.|+-+.+..|+.-+.|..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35566777788888888888777777766654443
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.98 E-value=78 Score=32.59 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCC
Q 016664 336 DEINAAWGQACLLLHTMCQYFRPK 359 (385)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~kl~l~ 359 (385)
+++.+.+=.++-+...|-++||+.
T Consensus 310 e~s~~e~e~ml~~~e~il~~LgLp 333 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQSLGLP 333 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc
Confidence 344444444555555566666554
No 105
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.66 E-value=60 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
|...|+.+|+.+|+..+.+...+..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666555554443
No 106
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.62 E-value=1e+02 Score=25.60 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl 285 (385)
+.|..++...|..|+.+...+......|+. .+.+.|.+|=.+...++..+..++.++..+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~---~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQN---AIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444444444333332 223333344444444444444444444333
No 107
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=51.38 E-value=93 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhccccCCCc
Q 016664 289 IEVSQAHLELLKRTNVLNDA 308 (385)
Q Consensus 289 ~~~~~~qLdkL~ktNV~nd~ 308 (385)
+......+.+|..-|-+.++
T Consensus 96 ~~~LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 96 KEQLTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 33355567777777765554
No 108
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.17 E-value=27 Score=28.84 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 225 EERKLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 225 EE~~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
+-..|.++|+.|+.|...|.+++..|+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777776654
No 109
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=51.01 E-value=1.1e+02 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (385)
Q Consensus 211 ~~e~l~~e~~~Le~EE~~L~~eLeelEke~~ 241 (385)
++++-.+.+.+|++|.+...+++++.-++.+
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae 116 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444444433333
No 110
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=50.86 E-value=26 Score=22.73 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 234 EETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 234 eelEke~~~l~~el~~le~e~~~l 257 (385)
+.||+.++.++..+..++.+.+.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655555555544433
No 111
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=50.65 E-value=1.4e+02 Score=26.77 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~----------~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
...|.....+|...++.+|++...+..++..++.....+++.+.. .--.-..+..|+.++..+-.+++.-
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDa 130 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDT 130 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777777777644444332211 0001123456778877777776666
Q ss_pred HHHHHHHH
Q 016664 289 IEVSQAHL 296 (385)
Q Consensus 289 ~~~~~~qL 296 (385)
+-+...-|
T Consensus 131 Iy~L~~al 138 (174)
T 2p22_A 131 IECLSRML 138 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
No 112
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=50.44 E-value=34 Score=22.51 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~ 248 (385)
|.+|+..|.+|.+.+.=|+.
T Consensus 7 lkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 113
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.35 E-value=86 Score=31.74 Aligned_cols=23 Identities=9% Similarity=-0.175 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCC
Q 016664 337 EINAAWGQACLLLHTMCQYFRPK 359 (385)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~l~ 359 (385)
++.+..-.++-+...+.+.||+.
T Consensus 315 ~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 315 ESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444445555566666677765
No 114
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.99 E-value=27 Score=25.55 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAEL 247 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el 247 (385)
.|..|-.+|.+++++|.++.+++.+++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555555443
No 115
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.47 E-value=1.2e+02 Score=25.49 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
..|+.+...+.-|++.|..-++....+... ....+.+++..|..+...+...|-+||.....++..-+.. ..-|.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t---~~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT---IVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH---HhhHH
Confidence 457888888999999998877766544322 1234667777777777777777777777776666543322 23455
Q ss_pred HHHHHHHHH
Q 016664 259 ELEERYWQE 267 (385)
Q Consensus 259 ~eE~~~w~e 267 (385)
+.|.+|=+.
T Consensus 81 D~E~k~n~a 89 (111)
T 2v66_B 81 DFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 116
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.40 E-value=1.1e+02 Score=25.35 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~l 250 (385)
.-|.-.|+++|...+++..+.++.
T Consensus 33 dlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 33 DTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 117
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.24 E-value=1.1e+02 Score=25.30 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 216 ~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.+.+..++.|-++|...-...-....+|+.+++.|..|...|-
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555444444555555555555555555553
No 118
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=49.18 E-value=21 Score=28.75 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~ 254 (385)
+|.+++..|+.+..++.+++..++.+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555443
No 119
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.08 E-value=41 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~ 245 (385)
.+...|+.+-..|..++..|+.|...|..
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555444433
No 120
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=48.66 E-value=1.1e+02 Score=27.67 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016664 275 LIAHQEERDAISSKIEVSQAHLE 297 (385)
Q Consensus 275 l~~~~ee~~sl~~q~~~~~~qLd 297 (385)
+...+.++.+.+++++.++.+|+
T Consensus 107 ~~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 107 AQQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444455555555555444
No 121
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=48.64 E-value=27 Score=28.81 Aligned_cols=33 Identities=3% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
...|.+||+.|+.+...|+..|..++...+.+.
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666665555554
No 122
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.15 E-value=23 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
...|+.+++.|+.+...|..++..|+.+...|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655444
No 123
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.96 E-value=1.3e+02 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (385)
Q Consensus 211 ~~e~l~~e~~~Le~EE~~L~~eLeelEke~~ 241 (385)
++++-.+.+.+|++|.+...+++++.-++.+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e 116 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444444443333
No 124
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.64 E-value=84 Score=25.91 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (385)
Q Consensus 166 DhPLC~eC~d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~ 204 (385)
+.|++.+ =++.+.++++.++.|++...+..+.|+.
T Consensus 6 ~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 6 SFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp ---CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 4566888888888899888888887654
No 125
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=47.03 E-value=1.1e+02 Score=24.63 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l 257 (385)
.|.+++...++.++-|..++.|...+
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35555555555555555555554443
No 126
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.66 E-value=43 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
|+..|.+|.+.+..|+..++-|...|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 127
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.56 E-value=93 Score=24.96 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016664 230 EAAIEETEKQN 240 (385)
Q Consensus 230 ~~eLeelEke~ 240 (385)
.++|+.+|++.
T Consensus 57 ~~ei~~le~~i 67 (84)
T 1gmj_A 57 AKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 128
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.55 E-value=1.2e+02 Score=30.22 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
+.+++ ++.+...+..+.+..+.--+.+.++... ...+ +...|.++-+.+.++|+++|++..++++++..+
T Consensus 28 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 28 EALLA-LDREVQELKKRLQEVQTERNQVAKRVPK-APPE----EKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544 6666666666666666665655544321 1111 122344445555555556665555555555433
No 129
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=46.30 E-value=1.3e+02 Score=25.80 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKE-KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e-~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
.+.+.+..++++...+..-++.+..........+.+... ...|+..+.+| ..|++|.+...+++.++..++.+..+++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888877766554322110000101000 01122222221 1235566666666677777766665443
No 130
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.25 E-value=31 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le 251 (385)
-....+.|++++++.+.|+.++..||
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888877776553
No 131
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.07 E-value=61 Score=31.68 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=11.3
Q ss_pred CCcchhhHHHHHHHH
Q 016664 331 IPVEWDEINAAWGQA 345 (385)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (385)
-.-.|.|-=.++|..
T Consensus 126 F~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 126 FTRDWVSYREGFGYL 140 (323)
T ss_dssp CCCCHHHHHHCEEEE
T ss_pred ccCCHHHHhhhhCCc
Confidence 345799888888875
No 132
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.31 E-value=57 Score=32.67 Aligned_cols=31 Identities=6% Similarity=0.050 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
-..|..+|.++.++.+++.++++.++.+.+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELET 35 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555544433
No 133
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=44.76 E-value=1.2e+02 Score=26.23 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCceeeeec
Q 016664 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 314 (385)
Q Consensus 271 ~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktN-V~nd~F~I~hd 314 (385)
++.+...+..++.....++..|....+||+|-+ -+=-+|++-|.
T Consensus 43 ~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 43 CENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 344455556667777888999999999999873 23234444444
No 134
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=44.17 E-value=36 Score=22.36 Aligned_cols=11 Identities=45% Similarity=0.489 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016664 236 TEKQNAEVNAE 246 (385)
Q Consensus 236 lEke~~~l~~e 246 (385)
||+|.++.+++
T Consensus 6 lekevaqaeae 16 (33)
T 1fmh_A 6 LEKEVAQAEAE 16 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 135
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.91 E-value=3e+02 Score=28.74 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhcc
Q 016664 286 SSKIEVSQAHLELLKRT 302 (385)
Q Consensus 286 ~~q~~~~~~qLdkL~kt 302 (385)
.++....+++++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455666777777776
No 136
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.49 E-value=1.4e+02 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELE 251 (385)
Q Consensus 235 elEke~~~l~~el~~le 251 (385)
..|+++..+..|+++|.
T Consensus 44 ~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 137
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.37 E-value=2.6e+02 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 016664 344 QACLLLHTMCQYFRPKFP 361 (385)
Q Consensus 344 Q~~LLL~tla~kl~l~F~ 361 (385)
|-=.|+.+++..+-..+.
T Consensus 184 qqKQL~qv~a~~llP~~~ 201 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSRD 201 (390)
T ss_pred HHHHHHhhhhhccccccc
Confidence 333488888877655553
No 138
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=43.19 E-value=1.5e+02 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 256 RFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (385)
Q Consensus 256 ~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q 288 (385)
.|.++-..|-+-.++.+.++..+...|..+..+
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666555444
No 139
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=42.90 E-value=1.7e+02 Score=25.56 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVN 244 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~ 244 (385)
..-..+..++++...|++.+-
T Consensus 18 ~D~~s~~~eleEnqeEL~iVg 38 (167)
T 4gkw_A 18 QDTESLQKQLEENQEELEIVG 38 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 140
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=42.85 E-value=1.4e+02 Score=24.51 Aligned_cols=81 Identities=11% Similarity=0.246 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hhcc--------------cCC--------------HHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEG----EARD--------------VLS--------------EADFLKEKLKIE 223 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~----~~~~--------------~~~--------------~e~l~~e~~~Le 223 (385)
..++.+..++..+...+..|..+++.|+. ...+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 34556666677777777778777776543 1100 000 011122333355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 224 ~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
...+.+...++.++++.+.+.+++..+..+..+
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777777777666666666654433
No 141
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.42 E-value=49 Score=26.52 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 215 l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
+..+...|+.|-..|..+|+.|++|...+..-+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666665555444
No 142
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.30 E-value=1.2e+02 Score=23.60 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
..+..+.+|.+++.+.++.++.+...+.++|.
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~ 35 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEI 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655554443
No 143
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.31 E-value=1.5e+02 Score=24.56 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELE 251 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le 251 (385)
...|.=+++-|....+++++.+..+.
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333333333
No 144
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.83 E-value=2.9e+02 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 271 ~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
...++..++..+.++..+++..+.++..|..
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444555555566666677776776766654
No 145
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.45 E-value=77 Score=31.67 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~ 249 (385)
.++..+.++-+++..++++|..++.++.++|..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777788888888888888888877764
No 146
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.31 E-value=3.4e+02 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 016664 172 ECMRVLSDKLDKEV 185 (385)
Q Consensus 172 eC~d~Lle~Ld~ql 185 (385)
+--..|.+.|+..+
T Consensus 379 ~~~~~L~~~i~~~~ 392 (592)
T 1f5n_A 379 LFQKELAAQLEKKR 392 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 147
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.28 E-value=1.5e+02 Score=24.21 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 016664 285 ISSKIEVSQAHLELLKRT 302 (385)
Q Consensus 285 l~~q~~~~~~qLdkL~kt 302 (385)
+.-..+..+.+|..|++-
T Consensus 66 l~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHTTSHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 334444555555555543
No 148
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.14 E-value=46 Score=24.25 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
-..|..++.+|..+...|.+++.++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 149
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.72 E-value=1.7e+02 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016664 175 RVLSDKLDKEVDDVTRDIEA 194 (385)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (385)
|.+|+.|+.+++.+..+.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777666555444
No 150
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=39.61 E-value=92 Score=31.00 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA--DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e--~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~ 258 (385)
++.+++++++||+....-|+..+.......++. +...++..+.+++..|.+||..+- .++.+..-|.+.+... ++-
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l~-~LK~Vs~Li~EfktN~-ell 91 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNILD-NLKTFLNLIKEVKTNL-NIL 91 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhH-HHH
Confidence 789999999999999999988764211100111 122233345566666666664442 3444444444444432 344
Q ss_pred HHHHHHHHHHH
Q 016664 259 ELEERYWQEFN 269 (385)
Q Consensus 259 ~eE~~~w~e~n 269 (385)
+.|.-|+...|
T Consensus 92 ElENCyYSLqn 102 (355)
T 3etv_A 92 ELENCYYSLQS 102 (355)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665444
No 151
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.58 E-value=1.3e+02 Score=23.34 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSK 255 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~ 255 (385)
+.+.|+++|.+...++..+..++....
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456667777777766666666665443
No 152
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=38.57 E-value=1.8e+02 Score=24.60 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=7.0
Q ss_pred HHHHHHhcccc
Q 016664 294 AHLELLKRTNV 304 (385)
Q Consensus 294 ~qLdkL~ktNV 304 (385)
..+.+|+--|+
T Consensus 102 E~ik~lr~gn~ 112 (119)
T 3etw_A 102 EKIQALRAGNL 112 (119)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHcCCc
Confidence 35667776665
No 153
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.71 E-value=89 Score=22.78 Aligned_cols=22 Identities=9% Similarity=0.216 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEV 243 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l 243 (385)
|+.+-..|..++..|..|...|
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 154
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=37.54 E-value=60 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 234 EETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 234 eelEke~~~l~~el~~le~e~~~l 257 (385)
+.|.++....+.+|..|+.+..+|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344445555555555555544444
No 155
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.40 E-value=1.8e+02 Score=24.38 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEET 236 (385)
Q Consensus 222 Le~EE~~L~~eLeel 236 (385)
|..|...|..+|+.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 156
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.06 E-value=1.8e+02 Score=24.18 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~ 270 (385)
++|.+...+.+++.+++.+++.....++.+-.-||....+
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445555555444444444444444433
No 157
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.86 E-value=3.6e+02 Score=27.59 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.4
Q ss_pred CCCcchhhHHHHHHHH
Q 016664 330 KIPVEWDEINAAWGQA 345 (385)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (385)
+--=.|+|-=.++|.+
T Consensus 266 ~F~R~W~~Yk~GFG~~ 281 (464)
T 1m1j_B 266 NFGRAWDEYKRGFGNI 281 (464)
T ss_dssp CCCCCHHHHHHCEECC
T ss_pred ccccCHHHHHHHhCCc
Confidence 3445788888888865
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=36.53 E-value=2.7e+02 Score=28.53 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 218 EKLKIEEEERKLEAAIEETEKQNAE 242 (385)
Q Consensus 218 e~~~Le~EE~~L~~eLeelEke~~~ 242 (385)
+..++..+.+.|.++..++.++..+
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555443
No 159
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.08 E-value=46 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
.|+.++.++..+++.|.++...|.+++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666777777777666666665554
No 160
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.92 E-value=41 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
.|+.+...|..++++|.++...|.+++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666665555555544
No 161
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.53 E-value=24 Score=35.36 Aligned_cols=90 Identities=12% Similarity=0.241 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
++..++..+.++-+++..++++|..++.++.++|..++...++. +....+...+..++.+++++...++.++....
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888899999999999988888887654321110 11223333444444444444444444433222
Q ss_pred HHHHHHhccccCCCceeee
Q 016664 294 AHLELLKRTNVLNDAFPIW 312 (385)
Q Consensus 294 ~qLdkL~ktNV~nd~F~I~ 312 (385)
|+=-|+.++.=.++
T Consensus 103 -----~~ipN~~~~~vp~g 116 (425)
T 2dq3_A 103 -----LWIPNLPHPSVPVG 116 (425)
T ss_dssp -----HTSCCCCCTTSCCC
T ss_pred -----HhCCCCCCCCCCCC
Confidence 33346666654444
No 162
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.51 E-value=1.1e+02 Score=22.60 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAE 242 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~ 242 (385)
|+.+-..|..++..|..+...
T Consensus 35 L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443333
No 163
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.22 E-value=2.3e+02 Score=24.90 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 268 FNNFQFQLIAHQEERDAISSKIEVSQ 293 (385)
Q Consensus 268 ~n~~q~ql~~~~ee~~sl~~q~~~~~ 293 (385)
...++.++.+...-++++..|+...+
T Consensus 117 ~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 117 NKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554433
No 164
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.06 E-value=58 Score=25.75 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
..|+.++..+..+++.|.++...|.++|.+|
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777777777776666654
No 165
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=33.53 E-value=2.8e+02 Score=25.30 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016664 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (385)
Q Consensus 265 w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~ktNV 304 (385)
..+|..|-.--..+.-+...+..++..-..||+.|+.+=|
T Consensus 147 l~DY~~fv~mKa~Ll~eqReLddkIklgeEQL~~L~~sL~ 186 (190)
T 3thf_A 147 CADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDALV 186 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhc
Confidence 4555555555555666677788999999999999987644
No 166
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=33.50 E-value=2.2e+02 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQRL 202 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (385)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555554444444333333
No 167
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=33.40 E-value=1.7e+02 Score=22.73 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
.|...+..+.+|.+++.+.++.++.+...+.++|
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee 36 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEE 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777777776666665444
No 168
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.41 E-value=1.6e+02 Score=27.87 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 269 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~-e~n 269 (385)
+++....++..++.++++++.++++++..++....-++.+ ..|. .++
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 3445566667777777777777777777777653223333 3566 544
No 169
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.96 E-value=1.6e+02 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 219 ~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
+.+|++--..|...+..||..+.+.++||..|.+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667888888888888888888777654
No 170
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.83 E-value=4.5e+02 Score=27.23 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 232 AIEETEKQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 232 eLeelEke~~~l~~el~~le~e~----~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
.+.+...+.+++.+|-++++++- ...+..-++|-++...++.++.+.+.++..-+......+..|..+.+
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555544444322 22333444677777777777777776665443333333334444433
No 171
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=31.61 E-value=56 Score=26.02 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
-+..|+..++.+++|||-|-.-|+.++
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999888776
No 172
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.74 E-value=2.3e+02 Score=23.48 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016664 233 IEETEKQN 240 (385)
Q Consensus 233 LeelEke~ 240 (385)
++.|..+.
T Consensus 20 ~~~l~~~~ 27 (125)
T 1joc_A 20 IEKLQTKV 27 (125)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 173
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.11 E-value=3.1e+02 Score=24.45 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~s 284 (385)
-+.|...|.+++.....|..+|+...+....++ ++.|+++=++..+...+|.
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relE-------RemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREID-------KRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHH
Confidence 345667777777777777777666555444333 6778888888888877765
No 174
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.72 E-value=63 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+..|+..++.+++|||-|-.-|+.++
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577778888888888887777664
No 175
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=28.72 E-value=3e+02 Score=24.09 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHHHHHH-hccccCCCceeeeecCCeeeeccccCCC
Q 016664 291 VSQAHLELL-KRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (385)
Q Consensus 291 ~~~~qLdkL-~ktNV~nd~F~I~hdG~fGTINglRLGr 327 (385)
|...+.+.| .+.- +.+-+||+| |||.|.
T Consensus 71 y~e~~r~elf~k~K--------t~~l~~G~v-~~R~~~ 99 (171)
T 2p2u_A 71 FATLNKTEMFKDRK--------SLDLGFGTI-GFRLST 99 (171)
T ss_dssp HHHHTHHHHCC-----------CCBCSSCBC-CCCCCC
T ss_pred HHHHhHHHhcCCCe--------EEEeCCEEE-EEEeCC
Confidence 555666666 3221 234567887 899985
No 176
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.69 E-value=47 Score=21.12 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQ 239 (385)
Q Consensus 226 E~~L~~eLeelEke 239 (385)
-.+|.++|..||-|
T Consensus 9 narlkqeiaaleye 22 (28)
T 3ra3_B 9 NARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444333
No 177
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.56 E-value=1e+02 Score=27.03 Aligned_cols=30 Identities=7% Similarity=0.191 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
...+.+..++.+.+.+.+++.+++.+...|
T Consensus 77 asr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 77 INRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 178
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.55 E-value=71 Score=31.94 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC
Q 016664 337 EINAAWGQACLLLHTMCQYFRPKF 360 (385)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~l~F 360 (385)
++.+..-.++-+...+.+.||+.|
T Consensus 294 ~s~~~~~e~i~~~~~il~~LGL~~ 317 (425)
T 2dq3_A 294 TSYDELEKLVKDAEEVLQLLGLPY 317 (425)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCce
Confidence 344455566666666777887763
No 179
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.43 E-value=2.3e+02 Score=22.79 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 264 YWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 264 ~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
.|.+...+..++..+..|++.+..+|+
T Consensus 60 L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 60 LIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555556665555554
No 180
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.13 E-value=2.1e+02 Score=22.23 Aligned_cols=17 Identities=6% Similarity=0.255 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAE 246 (385)
Q Consensus 230 ~~eLeelEke~~~l~~e 246 (385)
...++.++.+.+.+..+
T Consensus 71 ~~~~e~i~~~i~~le~~ 87 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQ 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 181
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.90 E-value=1.2e+02 Score=28.84 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~e 246 (385)
+++.+.+.++..+...+.+++.+|+.+..++.+.
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444445556666666666666666666666666
No 182
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.89 E-value=2.7e+02 Score=28.59 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~l 250 (385)
-+.+.++|+++|.+..++++++..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555555443
No 183
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.86 E-value=95 Score=31.15 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.4
Q ss_pred CcchhhH
Q 016664 332 PVEWDEI 338 (385)
Q Consensus 332 ~V~W~EI 338 (385)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4789877
No 184
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=27.56 E-value=2.1e+02 Score=25.66 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 274 ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
++.+.+.+....+++++.++.+|+.++.
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777888888888888876654
No 185
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.49 E-value=93 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 226 E~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
...|+.+++.|+.+...|..++..|..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555543
No 186
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.41 E-value=1.2e+02 Score=29.70 Aligned_cols=11 Identities=27% Similarity=0.296 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016664 230 EAAIEETEKQN 240 (385)
Q Consensus 230 ~~eLeelEke~ 240 (385)
..+|..|+...
T Consensus 25 ~~~i~~L~~~l 35 (323)
T 1lwu_C 25 DAQIQELSEMW 35 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 187
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.29 E-value=3.1e+02 Score=24.52 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 261 EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 261 E~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
++.+-+..+.++.....++.++..++..+.....+.++++.
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666777777777777775555543
No 188
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=27.09 E-value=1.1e+02 Score=25.05 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=10.9
Q ss_pred HhccccCCCceeeeecCCeee
Q 016664 299 LKRTNVLNDAFPIWHDGEFGT 319 (385)
Q Consensus 299 L~ktNV~nd~F~I~hdG~fGT 319 (385)
|++...|.+-.-|--..|-||
T Consensus 56 i~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 56 LRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhcCcCCCcCeEEEEECCCCC
Confidence 444455555555555555544
No 189
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.08 E-value=2.6e+02 Score=23.46 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 223 EEEERKLEAAIEETEKQNAEVNAELKEL 250 (385)
Q Consensus 223 e~EE~~L~~eLeelEke~~~l~~el~~l 250 (385)
++....+.+++.+|++.++.++..+...
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 190
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.78 E-value=2.8e+02 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
..|..+|..|......+...|.+++.....|+..+.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 345555555555555555556666555555544444
No 191
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=26.67 E-value=3.2e+02 Score=23.75 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~ 252 (385)
+.+.+....|....+.|..++..++++...+..+|+.+-.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777777777777777777777765543
No 192
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.51 E-value=3.2e+02 Score=23.78 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql 275 (385)
..+.++...+.++|+.++.-.....---+...++..+.--+|++|...-.+|-.+|
T Consensus 57 ~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL 112 (141)
T 3okq_A 57 ETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDL 112 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566655555554444444555544444456666776666664443
No 193
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.23 E-value=2.5e+02 Score=22.37 Aligned_cols=6 Identities=17% Similarity=0.590 Sum_probs=2.3
Q ss_pred HHHHHH
Q 016664 181 LDKEVD 186 (385)
Q Consensus 181 Ld~qle 186 (385)
|+.-++
T Consensus 15 LQSALe 20 (81)
T 1wt6_A 15 LQEALE 20 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 194
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.07 E-value=1.2e+02 Score=23.30 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 230 EAAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 230 ~~eLeelEke~~~l~~el~~le~e~ 254 (385)
...+.+||.++..-+++|..|+.+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655555666555443
No 195
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=25.82 E-value=1.4e+02 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHHH
Q 016664 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKL 220 (385)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~~e~l~~e~~ 220 (385)
++.|.+|-..++...+.|..-|..+.+.. +..++.+++.+++.
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~ 88 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMK 88 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHH
Confidence 44455555555556666776666555432 23445555554433
No 196
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=25.72 E-value=1.3e+02 Score=23.23 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 221 ~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
+|..+-..|..+|..+|..-.-.. ++..|+.+...|+++-
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI 60 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEI 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHH
Confidence 345556666666666655443333 5555555555554443
No 197
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.67 E-value=2.9e+02 Score=23.06 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEAC 198 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~f 198 (385)
|+.+++.+..+++.-..|
T Consensus 18 l~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 18 ANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 198
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=25.55 E-value=3.4e+02 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~ 252 (385)
+.+.+..++.|+++|+-+.+.+..
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~~ 57 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVVD 57 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555554444444433
No 199
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=25.17 E-value=11 Score=28.95 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=15.7
Q ss_pred CCCccccCCCCCceecccCCcc
Q 016664 9 KGRTLSVDPNVPRWVCQNCRHF 30 (385)
Q Consensus 9 ~~~~~~~~~~~~~~~Cq~C~~~ 30 (385)
+|.+..| |++|.|.|+.|--.
T Consensus 25 ~G~~~~I-~~Vp~~~C~~CGE~ 45 (78)
T 3ga8_A 25 RGRKTVL-KGIHGLYCVHCEES 45 (78)
T ss_dssp TTEEEEE-EEEEEEEETTTCCE
T ss_pred CCEEEEE-cCceeEECCCCCCE
Confidence 5566555 78899999999754
No 200
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.78 E-value=2.9e+02 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (385)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~L~ 203 (385)
+.+..++..++.+...+..-+++|.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455555665555555555555443
No 201
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.71 E-value=4.4e+02 Score=24.69 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~------~eLeelEke~~~l~~el~~le~e~ 254 (385)
+-...+.--.-.+.|...||.+..... +-........++..+..+|. ..|..||+|+...+++..-.|++.
T Consensus 78 ~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 78 LGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333344455668888888764211 11112222333444444443 345666666665555554444443
Q ss_pred H
Q 016664 255 K 255 (385)
Q Consensus 255 ~ 255 (385)
.
T Consensus 155 ~ 155 (234)
T 3plt_A 155 S 155 (234)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.35 E-value=12 Score=35.23 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (385)
Q Consensus 213 e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~q 274 (385)
+++.++...+..+.+.|.+++.+++.+.+++.+++.+.+.+.....+...+........+|+
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceee
No 203
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.32 E-value=2.5e+02 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (385)
Q Consensus 222 Le~EE~~L~~eLeelEke~~~l~~el~ 248 (385)
++.+...|.+++.++.....++.+++.
T Consensus 64 l~~~l~~l~~e~~el~d~~lR~~AEfe 90 (213)
T 4ani_A 64 AKAQIAELEAKLSEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444433333333
No 204
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.99 E-value=45 Score=32.55 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=11.0
Q ss_pred CcchhhHHHHHHHH
Q 016664 332 PVEWDEINAAWGQA 345 (385)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (385)
.=.|.|-=.++|..
T Consensus 118 ~R~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 118 KKNWIQYKEGFGHL 131 (319)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred ecCHHHHhHhhCCc
Confidence 44799988888876
No 205
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.58 E-value=2.3e+02 Score=27.62 Aligned_cols=38 Identities=32% Similarity=0.335 Sum_probs=18.7
Q ss_pred ccCCCceeeeecCC-----eeeeccccCCCCCCCCcchhhHHHH
Q 016664 303 NVLNDAFPIWHDGE-----FGTINNFRLGRLPKIPVEWDEINAA 341 (385)
Q Consensus 303 NV~nd~F~I~hdG~-----fGTINglRLGrlp~~~V~W~EINAA 341 (385)
-++..++.|.+.+. -|+.+-+| ...|+.-+-|.-|.-|
T Consensus 311 ~~lAgal~~~~~~~~~y~y~gs~~~~~-~~~~~~ll~w~~i~~A 353 (426)
T 1lrz_A 311 LPISAGFFFINPFEVVYYAGGTSNAFR-HFAGSYAVQWEMINYA 353 (426)
T ss_dssp EEEEEEEEEECSSCEEEEEEEECGGGG-GGCHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEECCEEEEEecCchhhHh-hcCCcHHHHHHHHHHH
Confidence 36777777776542 23444444 1123334445555443
No 206
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=23.57 E-value=51 Score=25.67 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 229 L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
+..-|.+-|...+.|..+++-|+.|+.+++..+
T Consensus 34 l~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 34 LNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 334445555566666666666666666665433
No 207
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.28 E-value=3.3e+02 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 016664 237 EKQNAEVNAELKELE 251 (385)
Q Consensus 237 Eke~~~l~~el~~le 251 (385)
+...+++++++.+++
T Consensus 87 ~~~~~~l~~~i~~L~ 101 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQ 101 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 208
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.04 E-value=3.6e+02 Score=23.18 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 182 DKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (385)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE 261 (385)
..+++.+.+.-+.=.+-.+.|+..... + ...+..|+.+.+....-.++.+....++...+..++.+..+-++.-
T Consensus 23 ~~kLeeaek~adE~eR~~k~lE~r~~~--d----eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRa 96 (147)
T 2b9c_A 23 LQKLEEAEKAADESERGMKVIESRAQK--D----EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERA 96 (147)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc--c----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444555555432110 0 1112223333333334444444444444444444443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 262 ERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (385)
Q Consensus 262 ~~~w~e~n~~q~ql~~~~ee~~sl~~q~~ 290 (385)
+..=...-.+.-+|...-+.+.|++++-+
T Consensus 97 e~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 97 ELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 22222333344444444444444444333
No 209
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.94 E-value=1.7e+02 Score=22.90 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVN 244 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~ 244 (385)
.....|+.|-..|..++..|++|...|.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554443
No 210
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.90 E-value=3.4e+02 Score=22.79 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (385)
Q Consensus 220 ~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~ 256 (385)
.-++...+.+...++.+++..+.+.+++..++....+
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555566666666666666666666655554433
No 211
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.87 E-value=3.7e+02 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (385)
Q Consensus 214 ~l~~e~~~Le~EE~~L~~eLeelEk 238 (385)
+|..+..+|+.+|+++..+|+..-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777765544
No 212
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.66 E-value=3e+02 Score=22.02 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 227 ~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.+..+|..-.++.+.++.+|...+..+..|
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555555555544444444
No 213
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.28 E-value=2e+02 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELEL 252 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~ 252 (385)
+...||...|++..++...+++|++
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 214
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=22.09 E-value=14 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=19.1
Q ss_pred CCCceeee-e--cCCeeeeccc---cCCCCCC
Q 016664 305 LNDAFPIW-H--DGEFGTINNF---RLGRLPK 330 (385)
Q Consensus 305 ~nd~F~I~-h--dG~fGTINgl---RLGrlp~ 330 (385)
+|+.|.|. . ++.|-||+|| +||++|.
T Consensus 30 l~~~l~~~~l~~~~~~~Tl~G~i~~~lg~iP~ 61 (92)
T 2o3g_A 30 LAPQLNLPQQEEDADFHTVAGLIMEELQTIPD 61 (92)
T ss_dssp HTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCC
T ss_pred HHHHhCCCCCCcCCCcccHHHHHHHHhCCCCC
Confidence 45666664 3 4679999999 7888886
No 215
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.84 E-value=94 Score=22.77 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016664 224 EEERKLEAAIEETEKQ 239 (385)
Q Consensus 224 ~EE~~L~~eLeelEke 239 (385)
.+-..|..++..|..|
T Consensus 36 ~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 36 AQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 216
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.70 E-value=3.5e+02 Score=22.52 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~e 246 (385)
+|..||...|+++....+.
T Consensus 39 eLQ~Ei~~~E~QL~iArQK 57 (107)
T 2k48_A 39 ELQENITAHEQQLVTARQK 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 217
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=21.43 E-value=8.5 Score=30.29 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.3
Q ss_pred CCeeeeccc---cCCCCCC
Q 016664 315 GEFGTINNF---RLGRLPK 330 (385)
Q Consensus 315 G~fGTINgl---RLGrlp~ 330 (385)
+.|-||+|| +||++|.
T Consensus 44 ~~~~TlgG~i~~~lg~iP~ 62 (93)
T 2nqw_A 44 DEVDTLSGLFLEIKQELPH 62 (93)
T ss_dssp TTCSBHHHHHHHHHCSCCC
T ss_pred CCcccHHHHHHHHhCcCCC
Confidence 578999999 7888876
No 218
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=21.41 E-value=2.6e+02 Score=27.45 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHHHHH
Q 016664 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 222 (385)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~~e~l~~e~~~L 222 (385)
.=++.|.+|-..++...+.|..-|..+.+.. +..++.+++.+++.++
T Consensus 25 ~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 25 KKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 3445566666666667777777777555432 2344555555443333
No 219
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=21.39 E-value=4.3e+02 Score=23.44 Aligned_cols=10 Identities=10% Similarity=0.135 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 016664 173 CMRVLSDKLD 182 (385)
Q Consensus 173 C~d~Lle~Ld 182 (385)
|...+.+.++
T Consensus 109 ~~~~~~~~~~ 118 (251)
T 2fic_A 109 EANKIAENND 118 (251)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3333344444
No 220
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.36 E-value=3.4e+02 Score=25.06 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 198 CLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 260 (385)
Q Consensus 198 fL~~L~~~~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l~~e 260 (385)
|.+.|..+....+ .+.++|-.+|-++...|..+|..|.++..++..-...++--..-++++
T Consensus 98 YWk~lAE~RR~AL--~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 98 YWKEVAEKRRKAL--YEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 221
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.18 E-value=6.4e+02 Score=25.36 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=11.3
Q ss_pred CCCcchhhHHHHHHHH
Q 016664 330 KIPVEWDEINAAWGQA 345 (385)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (385)
+--=.|.|-=.++|.+
T Consensus 203 dF~R~W~eYk~GFG~l 218 (411)
T 3ghg_C 203 DFKKNWIQYKEGFGHL 218 (411)
T ss_dssp CCCCCHHHHHHCEEEE
T ss_pred cccCCHHHHhcccCCc
Confidence 3445788888888864
No 222
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.12 E-value=1.6e+02 Score=21.87 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 231 AAIEETEKQNAEVNAELKELELKS 254 (385)
Q Consensus 231 ~eLeelEke~~~l~~el~~le~e~ 254 (385)
+.+.+||.+.+.|..+-..|..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444444333
No 223
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.97 E-value=5.8e+02 Score=24.78 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 016664 278 HQEERDAISSKIEVSQAHLELLKR 301 (385)
Q Consensus 278 ~~ee~~sl~~q~~~~~~qLdkL~k 301 (385)
...+++.+..+-.....++++|..
T Consensus 81 ~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 81 AIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444455556666654
No 224
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=20.91 E-value=4.9e+02 Score=23.93 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (385)
Q Consensus 217 ~e~~~Le~EE~~L~~eLeelEke~~~l~~el~~le~e~~~l 257 (385)
+.+++|+.+-.....+-.+|++-.+.+.+|+.+|+...+.|
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34556777777777778888888888888888777665555
No 225
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.72 E-value=3.5e+02 Score=22.11 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016664 274 QLIAHQEERDAISSKIEVSQAHLELLK 300 (385)
Q Consensus 274 ql~~~~ee~~sl~~q~~~~~~qLdkL~ 300 (385)
.+...+.+-..+..++.-.....+.|.
T Consensus 76 ~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 76 SLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333344444444444444443
No 226
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=20.69 E-value=2e+02 Score=28.14 Aligned_cols=9 Identities=33% Similarity=0.250 Sum_probs=3.9
Q ss_pred cCCeeeecc
Q 016664 314 DGEFGTINN 322 (385)
Q Consensus 314 dG~fGTINg 322 (385)
-|.+-.++|
T Consensus 314 Agal~~~~~ 322 (426)
T 1lrz_A 314 SAGFFFINP 322 (426)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEEEC
Confidence 344444444
No 227
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.54 E-value=4.6e+02 Score=32.65 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch--------hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 180 KLDKEVDDVTRDIEAYEACLQRLEGE--------ARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (385)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L~~~--------~~~~~~~e~l~~e~~~Le~EE~~L~~eLeelEke~~~l~ 244 (385)
.|+++-.++.++...++.-|+.|+.. ..+.++++++.+-+...+.+-.+..+.+++.++...+++
T Consensus 2143 dLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~ 2215 (2695)
T 4akg_A 2143 EMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFD 2215 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666667777777788878777643 235667777766555555444444444444444433333
No 228
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.50 E-value=3.2e+02 Score=21.51 Aligned_cols=35 Identities=9% Similarity=0.269 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (385)
Q Consensus 228 ~L~~eLeelEke~~~l~~el~~le~e~~~l~~eE~ 262 (385)
.|...|+.+..|.+.|.-+++.+.-+...+.+.-.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444443333
No 229
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.33 E-value=3e+02 Score=21.18 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016664 229 LEAAIEETEKQNAEVNAE 246 (385)
Q Consensus 229 L~~eLeelEke~~~l~~e 246 (385)
+...|..+|.++.++.++
T Consensus 10 ~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444333333
No 230
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.16 E-value=2.7e+02 Score=27.41 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016664 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (385)
Q Consensus 235 elEke~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~ee~~sl~~q~~~ 291 (385)
.+++|.+.++.++++++.++ ...|..|=..|+.++.+ +-.|.-|++-++-
T Consensus 7 ~~~~e~~~~~~~~~~vq~kA---~~~E~~Yn~~~dKmeqE----~lrRRkLENSIdE 56 (333)
T 4etp_B 7 ALEKEIAALEKEIAALEKEI---SKQEKFYNDTYNTVCKE----LLRSRRLENSIIE 56 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHhhhHHH
Confidence 34444444444444444433 23344455556555554 3334445555443
No 231
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=20.10 E-value=2.9e+02 Score=25.67 Aligned_cols=13 Identities=15% Similarity=0.332 Sum_probs=6.3
Q ss_pred HHHHHHHHHhccc
Q 016664 291 VSQAHLELLKRTN 303 (385)
Q Consensus 291 ~~~~qLdkL~ktN 303 (385)
|.+.-.|-|.+.|
T Consensus 165 YkqvcsDiInkMn 177 (294)
T 3caz_A 165 YSSVCADLIQKME 177 (294)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344455555554
Done!