Query 016665
Match_columns 385
No_of_seqs 239 out of 1156
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 4.7E-39 1.6E-43 284.7 12.6 110 1-111 26-136 (149)
2 2owa_A Arfgap-like finger doma 100.0 1.9E-38 6.5E-43 277.9 8.6 104 1-104 33-137 (138)
3 2p57_A GTPase-activating prote 100.0 3.1E-38 1E-42 277.7 9.1 108 1-109 34-142 (144)
4 3dwd_A ADP-ribosylation factor 100.0 1.4E-37 4.7E-42 273.8 9.4 104 1-104 35-139 (147)
5 3sub_A ADP-ribosylation factor 100.0 7.6E-37 2.6E-41 272.7 9.3 103 2-105 20-122 (163)
6 2iqj_A Stromal membrane-associ 100.0 1.5E-33 5.2E-38 245.9 4.5 90 1-90 24-123 (134)
7 2crr_A Stromal membrane-associ 100.0 2.4E-33 8.3E-38 246.6 4.5 76 1-76 26-101 (141)
8 2olm_A Nucleoporin-like protei 100.0 1.2E-31 4.1E-36 235.5 5.7 74 1-75 22-95 (140)
9 3o47_A ADP-ribosylation factor 100.0 2.5E-29 8.4E-34 246.5 9.9 101 1-101 34-135 (329)
10 3jue_A Arfgap with coiled-coil 99.9 1.6E-28 5.6E-33 244.8 5.9 75 1-75 42-116 (368)
11 3lju_X ARF-GAP with dual PH do 99.9 1.1E-27 3.9E-32 240.9 5.6 75 1-76 31-105 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 2.6E-25 8.9E-30 214.3 6.6 75 1-75 39-113 (301)
13 1dcq_A PYK2-associated protein 99.9 2.9E-25 1E-29 211.4 4.4 76 1-76 14-89 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 4.5E-25 1.5E-29 225.6 3.4 90 1-90 20-123 (497)
15 1gnf_A Transcription factor GA 91.9 0.13 4.4E-06 36.5 3.3 39 2-40 2-41 (46)
16 2vut_I AREA, nitrogen regulato 88.3 0.26 9.1E-06 34.4 2.4 35 5-39 2-37 (43)
17 3dfx_A Trans-acting T-cell-spe 87.9 0.27 9.3E-06 37.1 2.5 37 3-39 6-43 (63)
18 4gat_A Nitrogen regulatory pro 85.0 0.56 1.9E-05 35.7 2.8 38 3-40 8-46 (66)
19 4hc9_A Trans-acting T-cell-spe 82.5 0.62 2.1E-05 39.0 2.4 38 3-40 4-42 (115)
20 2kae_A GATA-type transcription 78.8 0.68 2.3E-05 35.7 1.3 37 3-40 7-46 (71)
21 1u5k_A Hypothetical protein; O 72.4 2.2 7.5E-05 39.2 3.2 48 2-65 148-195 (244)
22 1hcq_A Protein (estrogen recep 63.4 3.9 0.00013 32.2 2.4 33 1-36 1-33 (84)
23 1r4i_A Androgen receptor; AR, 59.4 3.9 0.00013 33.6 1.8 33 1-36 4-36 (105)
24 1d4u_A Nucleotide excision rep 54.6 3 0.0001 34.8 0.3 31 3-33 4-35 (111)
25 3g9m_A Glucocorticoid receptor 54.3 5.7 0.0002 31.5 2.0 30 3-35 1-30 (90)
26 4hc9_A Trans-acting T-cell-spe 49.9 9.9 0.00034 31.6 2.8 38 3-40 58-96 (115)
27 2han_B Ecdysone receptor; tran 48.2 8.7 0.0003 32.1 2.2 31 3-36 7-37 (119)
28 2ebl_A COUP transcription fact 47.7 9.4 0.00032 30.3 2.3 32 2-36 5-36 (89)
29 2nll_B Protein (thyroid hormon 47.3 7.7 0.00026 31.6 1.7 30 4-36 1-30 (103)
30 2han_A Protein ultraspiracle; 45.9 9.3 0.00032 30.6 2.0 30 4-36 10-39 (93)
31 3iz6_N 40S ribosomal protein S 43.8 17 0.00059 26.6 3.0 39 2-45 16-54 (56)
32 1ynw_B Retinoic acid receptor 42.7 9.6 0.00033 30.9 1.6 30 4-36 3-32 (99)
33 1dsz_A RAR-alpha, retinoic aci 42.0 11 0.00036 29.8 1.8 30 4-36 4-33 (86)
34 1kb2_A Vitamin D3 receptor; VD 40.2 11 0.00037 31.1 1.6 30 4-36 6-35 (110)
35 2a66_A Orphan nuclear receptor 40.2 11 0.00037 31.4 1.6 31 3-36 8-38 (113)
36 1lo1_A Steroid hormone recepto 38.4 9 0.00031 31.0 0.8 31 3-36 3-33 (98)
37 3dzy_D Peroxisome proliferator 37.5 17 0.00057 36.3 2.8 30 4-36 50-79 (419)
38 1a6y_A Orphan nuclear receptor 36.7 15 0.0005 29.5 1.8 30 4-36 7-36 (94)
39 1dsz_B RXR-alpha, retinoic aci 36.3 9.5 0.00033 30.0 0.6 31 3-36 4-34 (85)
40 1cit_A NGFI-B, protein (orphan 36.1 19 0.00065 28.5 2.4 28 6-36 2-29 (89)
41 1dl6_A Transcription factor II 35.9 18 0.0006 26.3 2.0 28 5-33 12-39 (58)
42 2uzg_A Ubiquitin carboxyl-term 34.3 17 0.00057 29.1 1.8 26 4-29 25-53 (97)
43 3j21_g 50S ribosomal protein L 33.4 11 0.00037 27.2 0.4 24 3-32 13-36 (51)
44 4hn5_A Glucocorticoid receptor 29.9 22 0.00075 29.7 1.8 29 4-35 29-57 (117)
45 3cbb_A HNF-4-alpha, hepatocyte 28.5 23 0.00078 27.3 1.6 28 6-36 2-29 (78)
46 3dzy_A Retinoic acid receptor 26.6 18 0.00062 36.7 0.9 29 4-35 137-165 (467)
47 3j20_P 30S ribosomal protein S 25.9 18 0.0006 26.6 0.5 29 2-32 16-44 (56)
48 3c5k_A HD6, histone deacetylas 25.4 33 0.0011 28.1 2.1 25 4-28 24-48 (109)
49 3j21_d 50S ribosomal protein L 24.2 30 0.001 27.6 1.6 26 6-32 35-77 (89)
50 2r2v_A GCN4 leucine zipper; co 23.5 1E+02 0.0035 20.3 3.7 22 355-376 3-24 (34)
51 3u5e_g 60S ribosomal protein L 23.2 28 0.00095 29.4 1.3 27 6-32 43-86 (121)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=284.73 Aligned_cols=110 Identities=55% Similarity=0.997 Sum_probs=105.0
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCC-CCHHHHHHHhcCChHHHHHHHHhcCCCC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTD 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~-W~~~~l~~m~~gGN~~a~~f~~~~g~~~ 79 (385)
+|+|++|||||+++|+|+|++||||||++|+|+||.||+|||+||||+||. |+++||+.|+.+||.++|+||++|+...
T Consensus 26 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~~ 105 (149)
T 2crw_A 26 VPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST 105 (149)
T ss_dssp STTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCCC
T ss_pred CcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 589999999999999999999999999999999999999999999999996 9999999999999999999999998764
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHHHHhhhhC
Q 016665 80 GGKIEAKYTSRAAELYKQILAKEVAKNMAEEA 111 (385)
Q Consensus 80 ~~~i~~KY~s~~a~~Yr~~l~~~v~~~~~~~~ 111 (385)
.+|++||.++++.+||++|.+++++++..++
T Consensus 106 -~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~ 136 (149)
T 2crw_A 106 -NDTNAKYNSRAAQLYREKIKSLASQATRKHG 136 (149)
T ss_dssp -CCHHHHTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -cchhhCcCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999887654
No 2
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.9e-38 Score=277.89 Aligned_cols=104 Identities=44% Similarity=0.833 Sum_probs=100.3
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHh-cCCCC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQ-HGWTD 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~-~g~~~ 79 (385)
+|+|++|||||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|+++||++|+.+||..+|+||++ +|+.+
T Consensus 33 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~~~ 112 (138)
T 2owa_A 33 RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNF 112 (138)
T ss_dssp SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCTTC
T ss_pred CcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHH
Q 016665 80 GGKIEAKYTSRAAELYKQILAKEVA 104 (385)
Q Consensus 80 ~~~i~~KY~s~~a~~Yr~~l~~~v~ 104 (385)
...+++||+++++.+||++|.++|+
T Consensus 113 ~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 113 SPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp CGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 7789999999999999999998874
No 3
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=277.65 Aligned_cols=108 Identities=56% Similarity=1.022 Sum_probs=102.7
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCC-CCHHHHHHHhcCChHHHHHHHHhcCCCC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTD 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~-W~~~~l~~m~~gGN~~a~~f~~~~g~~~ 79 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||. |+++||++|+.+||.++|+||+++|+..
T Consensus 34 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g~~~ 113 (144)
T 2p57_A 34 VPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA 113 (144)
T ss_dssp SGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTTCCC
T ss_pred CCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999999999999999999996 9999999999999999999999999876
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHHHHhhh
Q 016665 80 GGKIEAKYTSRAAELYKQILAKEVAKNMAE 109 (385)
Q Consensus 80 ~~~i~~KY~s~~a~~Yr~~l~~~v~~~~~~ 109 (385)
.+|++||++++|++||++|++.+++++..
T Consensus 114 -~~~~~KY~s~aA~~Yr~~l~~~~~~~~~~ 142 (144)
T 2p57_A 114 -NDANTKYNSRAAQMYREKIRQLGSAALAR 142 (144)
T ss_dssp -CSHHHHHTSHHHHHHHHHHHHHHHHTCC-
T ss_pred -CchhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999887653
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=273.77 Aligned_cols=104 Identities=40% Similarity=0.839 Sum_probs=96.8
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcC-CCC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG-WTD 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g-~~~ 79 (385)
+|+|++|||||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||+.|+.+||.++|+||++++ +.+
T Consensus 35 ~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~~~~~ 114 (147)
T 3dwd_A 35 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDP 114 (147)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTSTTCCT
T ss_pred CcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999986 344
Q ss_pred CCchhhhhchHHHHHHHHHHHHHHH
Q 016665 80 GGKIEAKYTSRAAELYKQILAKEVA 104 (385)
Q Consensus 80 ~~~i~~KY~s~~a~~Yr~~l~~~v~ 104 (385)
...|++||.+++|.+||++|+.+++
T Consensus 115 ~~~~~~KY~s~aA~~Yr~~l~~~~e 139 (147)
T 3dwd_A 115 CWSLQEKYNSRAAALFRDKVVALAE 139 (147)
T ss_dssp TCCHHHHHTSHHHHHHHHHHHHHHC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999998775
No 5
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=7.6e-37 Score=272.70 Aligned_cols=103 Identities=49% Similarity=0.868 Sum_probs=98.4
Q ss_pred CCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcCCCCCC
Q 016665 2 TPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGG 81 (385)
Q Consensus 2 p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g~~~~~ 81 (385)
|+|++|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++++||++||+.. .
T Consensus 20 p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~~~-~ 98 (163)
T 3sub_A 20 ESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGISD-F 98 (163)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTCTT-S
T ss_pred CCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCCcc-c
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999875 4
Q ss_pred chhhhhchHHHHHHHHHHHHHHHH
Q 016665 82 KIEAKYTSRAAELYKQILAKEVAK 105 (385)
Q Consensus 82 ~i~~KY~s~~a~~Yr~~l~~~v~~ 105 (385)
.++.||++++|.+||++|++.|+.
T Consensus 99 ~p~~KY~s~aA~~Yr~~L~~~v~~ 122 (163)
T 3sub_A 99 IPERKYRTKAADHYRKILRSIVHN 122 (163)
T ss_dssp CHHHHTTBHHHHHHHHHHHHHHTT
T ss_pred ChhhcCCCHHHHHHHHHHHHHHcC
Confidence 568999999999999999998864
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.5e-33 Score=245.91 Aligned_cols=90 Identities=42% Similarity=0.800 Sum_probs=81.0
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcCCCC-
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTD- 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g~~~- 79 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||+.|+.+||..+|.||+++....
T Consensus 24 ~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~ 103 (134)
T 2iqj_A 24 EEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETF 103 (134)
T ss_dssp SGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSSC
T ss_pred CcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCccC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999773221
Q ss_pred ---------CCchhhhhchH
Q 016665 80 ---------GGKIEAKYTSR 90 (385)
Q Consensus 80 ---------~~~i~~KY~s~ 90 (385)
+.||++||..+
T Consensus 104 ~~P~~~~~~e~fIr~KY~~k 123 (134)
T 2iqj_A 104 RRPQIDPAVEGFIRDKYEKK 123 (134)
T ss_dssp CCCCSHHHHHHHHHHHHTSC
T ss_pred CCCCchHHHHHHHHHHHhCC
Confidence 13677777665
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=2.4e-33 Score=246.57 Aligned_cols=76 Identities=47% Similarity=0.926 Sum_probs=74.0
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 76 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g 76 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||..+|+||+++.
T Consensus 26 ~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~l 101 (141)
T 2crr_A 26 EEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANL 101 (141)
T ss_dssp SGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSC
T ss_pred CccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999873
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.97 E-value=1.2e-31 Score=235.54 Aligned_cols=74 Identities=24% Similarity=0.608 Sum_probs=72.2
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhc
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 75 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~ 75 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||+||+| |+||||+||.|+++||++|+.+||..+|.||+++
T Consensus 22 ~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~ 95 (140)
T 2olm_A 22 LPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGL 95 (140)
T ss_dssp SGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTT
T ss_pred CcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhh
Confidence 4899999999999999999999999999999999999997 9999999999999999999999999999999986
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=246.48 Aligned_cols=101 Identities=42% Similarity=0.843 Sum_probs=95.3
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcCC-CC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGW-TD 79 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g~-~~ 79 (385)
.|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++++|+.|+.+||.++|+||++++. .+
T Consensus 34 ~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~~~~~ 113 (329)
T 3o47_A 34 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDP 113 (329)
T ss_dssp STTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCSSCCT
T ss_pred CCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999854 34
Q ss_pred CCchhhhhchHHHHHHHHHHHH
Q 016665 80 GGKIEAKYTSRAAELYKQILAK 101 (385)
Q Consensus 80 ~~~i~~KY~s~~a~~Yr~~l~~ 101 (385)
...+..+|.++++.+|+..+..
T Consensus 114 ~~~i~~~y~s~~A~lYr~kl~~ 135 (329)
T 3o47_A 114 CWSLQEKYNSRAAALFRDKVVA 135 (329)
T ss_dssp TCCHHHHHHSHHHHHHHHHHHH
T ss_pred CCCccccccchHHHHHhhhccc
Confidence 5679999999999999999875
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.94 E-value=1.6e-28 Score=244.78 Aligned_cols=75 Identities=44% Similarity=0.831 Sum_probs=73.7
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhc
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 75 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~ 75 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+.++|++|+.+||..+|.||+.+
T Consensus 42 ~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~ 116 (368)
T 3jue_A 42 VDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEAR 116 (368)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTT
T ss_pred CCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999986
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.94 E-value=1.1e-27 Score=240.88 Aligned_cols=75 Identities=37% Similarity=0.798 Sum_probs=73.1
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 76 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g 76 (385)
+|+|+.|+|||+++|+|||++||||||++|+|+||+| +|||+||||+||.|++++|++|+.+||..+|+||+++-
T Consensus 31 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~ 105 (386)
T 3lju_X 31 RPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKV 105 (386)
T ss_dssp SGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTC
T ss_pred CcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccC
Confidence 4899999999999999999999999999999999999 99999999999999999999999999999999999873
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=2.6e-25 Score=214.27 Aligned_cols=75 Identities=35% Similarity=0.660 Sum_probs=73.2
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhc
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQH 75 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~ 75 (385)
+|+|++|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|++.+|..|..+||..+|.+|+..
T Consensus 39 ~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~ 113 (301)
T 2b0o_E 39 RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQ 113 (301)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTT
T ss_pred CCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999875
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=2.9e-25 Score=211.39 Aligned_cols=76 Identities=38% Similarity=0.670 Sum_probs=73.8
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcC
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 76 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g 76 (385)
+|+|+.|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++.+|..|..+||..+++||+.+.
T Consensus 14 ~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l 89 (278)
T 1dcq_A 14 MTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCL 89 (278)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTC
T ss_pred CCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999763
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=4.5e-25 Score=225.57 Aligned_cols=90 Identities=33% Similarity=0.567 Sum_probs=81.6
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCChHHHHHHHHhcCCC--
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT-- 78 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN~~a~~f~~~~g~~-- 78 (385)
+|+|+.|+|||+++|+|+|+++|||||+.|||+||+||+|||+|||++||.|++.++++|+.+||..+|.+|+..-..
T Consensus 20 ~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~~~ 99 (497)
T 3lvq_E 20 RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHG 99 (497)
T ss_dssp STTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCSSS
T ss_pred CCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhccccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999976321
Q ss_pred ---C---------CCchhhhhchH
Q 016665 79 ---D---------GGKIEAKYTSR 90 (385)
Q Consensus 79 ---~---------~~~i~~KY~s~ 90 (385)
+ ..+|+.||..+
T Consensus 100 ~~kP~~~s~~~~re~fIraky~~~ 123 (497)
T 3lvq_E 100 GPKPSAESDMGTRRDYIMAKYVEH 123 (497)
T ss_dssp CSCCCTTCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCcHHHHHHHHHHHhhcc
Confidence 1 13678888765
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=91.93 E-value=0.13 Score=36.53 Aligned_cols=39 Identities=28% Similarity=0.740 Sum_probs=33.6
Q ss_pred CCCCcccCCCCC-CCCeeEeccccccchhhhhhhhcCCCc
Q 016665 2 TPRKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 40 (385)
Q Consensus 2 p~Nk~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~h 40 (385)
...+.|++|+.. -|.|-.-+.|..||-.|.-.++..|++
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 467899999985 589999999999999998888877764
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=88.33 E-value=0.26 Score=34.40 Aligned_cols=35 Identities=29% Similarity=0.646 Sum_probs=29.9
Q ss_pred CcccCCCCC-CCCeeEeccccccchhhhhhhhcCCC
Q 016665 5 KMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGV 39 (385)
Q Consensus 5 k~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~ 39 (385)
+.|++|+.. -|.|-.-..|-.||-.|.-..+..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999985 47999999999999999887776665
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=87.94 E-value=0.27 Score=37.11 Aligned_cols=37 Identities=16% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCcccCCCCC-CCCeeEeccccccchhhhhhhhcCCC
Q 016665 3 PRKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGV 39 (385)
Q Consensus 3 ~Nk~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~ 39 (385)
....|++|+.. -|.|-.-+.|-.||-.|.-.++..|+
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 46789999985 58999999999999999887777665
No 18
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=85.04 E-value=0.56 Score=35.68 Aligned_cols=38 Identities=26% Similarity=0.556 Sum_probs=32.1
Q ss_pred CCCcccCCCCC-CCCeeEeccccccchhhhhhhhcCCCc
Q 016665 3 PRKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 40 (385)
Q Consensus 3 ~Nk~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~h 40 (385)
....|+.|+.. -|.|-.-+.|-.||-.|.-.++..|++
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 46799999985 589999999999999998877776653
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=82.47 E-value=0.62 Score=39.03 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=30.7
Q ss_pred CCCcccCCCCC-CCCeeEeccccccchhhhhhhhcCCCc
Q 016665 3 PRKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 40 (385)
Q Consensus 3 ~Nk~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~h 40 (385)
.-+.|++||+. -|.|-.-..|-+||-.|.-.++..|.+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 35789999985 599999999999999998777765554
No 20
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=78.76 E-value=0.68 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.475 Sum_probs=29.5
Q ss_pred CCCcccCCCCC-CCCeeE--eccccccchhhhhhhhcCCCc
Q 016665 3 PRKMCFDCNAK-NPTWAS--VTYGIFLCIDCSAVHRSLGVH 40 (385)
Q Consensus 3 ~Nk~C~DCga~-nP~waS--v~~GiflC~~Csg~HR~lG~h 40 (385)
....|+.|+.. -|.|-. -.-| .||-.|.-.++..|++
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 35789999985 589998 6778 8999998888777654
No 21
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=72.39 E-value=2.2 Score=39.22 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=35.3
Q ss_pred CCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCcccceeccCCCCCCHHHHHHHhcCCh
Q 016665 2 TPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 65 (385)
Q Consensus 2 p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~VkSi~lD~W~~~~l~~m~~gGN 65 (385)
|.-..|+.||.+...|.++..|.++|..|...+ .++.+.+..|+..-+
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHh
Confidence 445689999998667889999999999995321 356677777754433
No 22
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=63.38 E-value=3.9 Score=32.22 Aligned_cols=33 Identities=27% Similarity=0.703 Sum_probs=27.8
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
|.+...|.-||.+. ....||++.|..|.++.|-
T Consensus 1 m~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 1 MKETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 56788999999753 3679999999999998874
No 23
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=59.35 E-value=3.9 Score=33.62 Aligned_cols=33 Identities=24% Similarity=0.736 Sum_probs=26.2
Q ss_pred CCCCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 1 MTPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 1 ~p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
++.++.|.-||.+. ....||++.|..|.++.|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 46678999999642 4689999999999998874
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=54.63 E-value=3 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCcccCCCCCCCC-eeEeccccccchhhhhh
Q 016665 3 PRKMCFDCNAKNPT-WASVTYGIFLCIDCSAV 33 (385)
Q Consensus 3 ~Nk~C~DCga~nP~-waSv~~GiflC~~Csg~ 33 (385)
+.-.|++||..--. |..-+|++.||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999986443 33568999999999764
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=54.33 E-value=5.7 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.755 Sum_probs=24.4
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhhhhh
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 35 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR 35 (385)
+++.|.-||.+. ....|||+.|..|.++.|
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhh
Confidence 578999999754 357899999999999776
No 26
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=49.86 E-value=9.9 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.457 Sum_probs=32.1
Q ss_pred CCCcccCCCCC-CCCeeEeccccccchhhhhhhhcCCCc
Q 016665 3 PRKMCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 40 (385)
Q Consensus 3 ~Nk~C~DCga~-nP~waSv~~GiflC~~Csg~HR~lG~h 40 (385)
....|+.|+.. -|.|-.-+.|-.||-.|.-.++..|++
T Consensus 58 ~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 58 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp TTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred ccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 45789999975 599999999999999998877776664
No 27
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=48.19 E-value=8.7 Score=32.14 Aligned_cols=31 Identities=19% Similarity=0.672 Sum_probs=25.7
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.+..|.-||.+. ....|||+.|..|.++.|-
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 367899999753 3689999999999998874
No 28
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=47.69 E-value=9.4 Score=30.33 Aligned_cols=32 Identities=25% Similarity=0.649 Sum_probs=26.1
Q ss_pred CCCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 2 TPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 2 p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
+.+..|.-||.+.- ...||++.|..|.++.|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997543 568999999999998874
No 29
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=47.32 E-value=7.7 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.638 Sum_probs=24.3
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
+..|.-||.+. ....|||+.|..|.++.|-
T Consensus 1 ~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 1 DELCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CCBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 35799999653 3578999999999998874
No 30
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=45.90 E-value=9.3 Score=30.58 Aligned_cols=30 Identities=20% Similarity=0.761 Sum_probs=25.0
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
...|.-||.+. ....|||+.|..|.++.|-
T Consensus 10 ~~~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 10 KHLCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp CCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 57899999754 3679999999999998874
No 31
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=43.82 E-value=17 Score=26.60 Aligned_cols=39 Identities=26% Similarity=0.600 Sum_probs=28.1
Q ss_pred CCCCcccCCCCCCCCeeEeccccccchhhhhhhhcCCCccccee
Q 016665 2 TPRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 45 (385)
Q Consensus 2 p~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~lG~hiS~Vk 45 (385)
++-..|.-||.+.- .-=.||+.+|..|- |.+...|.|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 45678999998543 33379999999884 56666676765
No 32
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=42.75 E-value=9.6 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.776 Sum_probs=23.5
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
...|.-||.+. ....|||+.|..|.++.|-
T Consensus 3 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRS---SGKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCC---CBCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCC---cceeeCccchHHHHHHHHh
Confidence 46799999754 3578999999999998874
No 33
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=42.05 E-value=11 Score=29.76 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=23.3
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.+.|.-||.+. ....||++.|..|.++.|-
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 4 YKPCFVCQDKS---SGYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp --CCTTTCSCC---CSEETTEECCHHHHHHHHH
T ss_pred CCCCcEECCCc---cceeeCchhHHHHHHHHHH
Confidence 35799999754 2568999999999998874
No 34
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=40.21 E-value=11 Score=31.13 Aligned_cols=30 Identities=17% Similarity=0.589 Sum_probs=24.1
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
...|.-||.+. ....||++.|..|.++.|-
T Consensus 6 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRA---TGFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCC---CceEeCchhHhhhhhhhee
Confidence 46799999754 3578999999999998874
No 35
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=40.18 E-value=11 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.660 Sum_probs=24.3
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.+..|.-||.+. ....|||+.|..|.++.|-
T Consensus 8 ~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 8 LEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp --CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 457899999643 3679999999999998873
No 36
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=38.38 E-value=9 Score=30.98 Aligned_cols=31 Identities=26% Similarity=0.793 Sum_probs=25.2
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
....|.-||.+. ....|||+.|..|.++.|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 3 PKRLCLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCCEETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 356899999754 3678999999999998874
No 37
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=37.49 E-value=17 Score=36.30 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=24.7
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
+..|.-||.+.- ...|||+-|..|.++.|-
T Consensus 50 ~~~C~vC~~~~~---g~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 50 AIECRVCGDKAS---GFHYGVHACEGCKGFFRR 79 (419)
T ss_dssp CCCCSSSCSCCC---SBCSSSBCCHHHHHHHHH
T ss_pred CCcCeECCCcCC---CCccCcccchhhhHHHcc
Confidence 667999997653 358999999999998763
No 38
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=36.75 E-value=15 Score=29.48 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=24.1
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
...|.-||.+. ....||++.|..|.++.|-
T Consensus 7 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 7 VLLCKVCGDVA---SGFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp -CBCTTTSSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCcCcEeCCCC---cceEeCccchhhhhhehhe
Confidence 45799999754 3678999999999998873
No 39
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=36.30 E-value=9.5 Score=30.01 Aligned_cols=31 Identities=19% Similarity=0.753 Sum_probs=24.8
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.+..|.-||.+. ....||++.|..|.++.|-
T Consensus 4 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRS---SGKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEE---SSEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCC---CceeeCccchHHHHHHHHH
Confidence 456899999753 2568999999999998874
No 40
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=36.07 E-value=19 Score=28.49 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=22.8
Q ss_pred cccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 6 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 6 ~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.|.-||.+.- ...||++.|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 6888986532 679999999999998874
No 41
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.95 E-value=18 Score=26.34 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred CcccCCCCCCCCeeEeccccccchhhhhh
Q 016665 5 KMCFDCNAKNPTWASVTYGIFLCIDCSAV 33 (385)
Q Consensus 5 k~C~DCga~nP~waSv~~GiflC~~Csg~ 33 (385)
..|-+|+..+..+ ...-|..+|..|.-+
T Consensus 12 ~~Cp~C~~~~lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEE-CSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeE-eCCCCeEEeCCCCCE
Confidence 4799999866322 345699999999443
No 42
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=34.32 E-value=17 Score=29.15 Aligned_cols=26 Identities=27% Similarity=0.707 Sum_probs=20.4
Q ss_pred CCcccCCCCCCCC-eeEec--cccccchh
Q 016665 4 RKMCFDCNAKNPT-WASVT--YGIFLCID 29 (385)
Q Consensus 4 Nk~C~DCga~nP~-waSv~--~GiflC~~ 29 (385)
...|.+|+..++. |+++. -|-+.|-+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 5689999966655 98888 88888844
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.45 E-value=11 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=19.5
Q ss_pred CCCcccCCCCCCCCeeEeccccccchhhhh
Q 016665 3 PRKMCFDCNAKNPTWASVTYGIFLCIDCSA 32 (385)
Q Consensus 3 ~Nk~C~DCga~nP~waSv~~GiflC~~Csg 32 (385)
..++|..|++. +..|+.-|..|..
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~ 36 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGY 36 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSS
T ss_pred CCccCCCCCCc------CCCCceecCCCCC
Confidence 34689999998 5579999999943
No 44
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=29.87 E-value=22 Score=29.65 Aligned_cols=29 Identities=24% Similarity=0.804 Sum_probs=23.4
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhh
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 35 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR 35 (385)
.+.|.-||.+. ....|||+.|..|.++-|
T Consensus 29 ~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 29 PKLCLVCSDEA---SGCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp -CBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCcCCcCCCcC---cccccCCcccchhhhhhh
Confidence 56899999754 357899999999999776
No 45
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=28.53 E-value=23 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=22.3
Q ss_pred cccCCCCCCCCeeEeccccccchhhhhhhhc
Q 016665 6 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 36 (385)
Q Consensus 6 ~C~DCga~nP~waSv~~GiflC~~Csg~HR~ 36 (385)
.|.-||.+.- ...||++.|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 5888886442 568999999999998873
No 46
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=26.63 E-value=18 Score=36.65 Aligned_cols=29 Identities=21% Similarity=0.797 Sum_probs=23.8
Q ss_pred CCcccCCCCCCCCeeEeccccccchhhhhhhh
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCIDCSAVHR 35 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~~Csg~HR 35 (385)
++.|.-||.+.- ...|||+.|..|.++.|
T Consensus 137 ~~~C~VCg~~a~---g~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 137 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 165 (467)
T ss_dssp CEECTTTSSEEC---SEETTEECCHHHHHHHH
T ss_pred CCcceeCCCCCC---CCcCCCcchhhhhHhcc
Confidence 457999997643 35899999999999877
No 47
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.89 E-value=18 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.626 Sum_probs=21.1
Q ss_pred CCCCcccCCCCCCCCeeEeccccccchhhhh
Q 016665 2 TPRKMCFDCNAKNPTWASVTYGIFLCIDCSA 32 (385)
Q Consensus 2 p~Nk~C~DCga~nP~waSv~~GiflC~~Csg 32 (385)
.+-..|.-||.+.- .-=.||+++|..|-.
T Consensus 16 rg~~rC~vcGr~~g--~iRkfGL~~cR~cfR 44 (56)
T 3j20_P 16 KGARRCIRCGQYGP--IIRIQGLMLCRHCFR 44 (56)
T ss_dssp STTCCCSSSCCSSS--CCCTTTCCCCHHHHH
T ss_pred CCceEeecCCCCcc--cccccCChHHHHHHH
Confidence 34578999998543 334799999999854
No 48
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.45 E-value=33 Score=28.08 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=20.1
Q ss_pred CCcccCCCCCCCCeeEeccccccch
Q 016665 4 RKMCFDCNAKNPTWASVTYGIFLCI 28 (385)
Q Consensus 4 Nk~C~DCga~nP~waSv~~GiflC~ 28 (385)
...|.+|+.....|+++.-|-+.|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 5679999998888987777777763
No 49
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.24 E-value=30 Score=27.62 Aligned_cols=26 Identities=23% Similarity=0.522 Sum_probs=18.5
Q ss_pred cccCCCCC-------CCC----------eeEeccccccchhhhh
Q 016665 6 MCFDCNAK-------NPT----------WASVTYGIFLCIDCSA 32 (385)
Q Consensus 6 ~C~DCga~-------nP~----------waSv~~GiflC~~Csg 32 (385)
.|.|||.+ -|. -++=.|| .+|-.|..
T Consensus 35 kC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 35 HCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp BCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 69999964 122 2355699 99999965
No 50
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.52 E-value=1e+02 Score=20.28 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016665 355 ISSLKNIAGETGKKLSSLASSL 376 (385)
Q Consensus 355 l~~lk~~v~~~A~KLs~~a~~~ 376 (385)
|.||-+-|++.+++...+++-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 6789999999999999999886
No 51
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=23.21 E-value=28 Score=29.35 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=19.0
Q ss_pred cccCCCCCCCC-----------------eeEeccccccchhhhh
Q 016665 6 MCFDCNAKNPT-----------------WASVTYGIFLCIDCSA 32 (385)
Q Consensus 6 ~C~DCga~nP~-----------------waSv~~GiflC~~Csg 32 (385)
.|.|||.+-+- -++=.||-.+|..|..
T Consensus 43 kCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr 86 (121)
T 3u5e_g 43 KCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVK 86 (121)
T ss_dssp BCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHH
T ss_pred CCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHH
Confidence 59999964211 3455699999999954
Done!