BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016666
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
 pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
          Length = 249

 Score = 40.4 bits (93), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 42 VSIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHA 97
          + +HCE C   +   L N+ G+ +   D+ Q  + V+  VA  T+I  L   GK A
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68


>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
          Dismutase
 pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
          Dismutase
          Length = 222

 Score = 38.9 bits (89), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 26/55 (47%)

Query: 45 HCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHAEL 99
          HCE C   +   L N+ G+ +   D+ Q    V+  VA  T+I  L   GK A +
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAII 69


>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
 pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
 pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
 pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
 pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
 pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
 pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
 pdb|1TL5|A Chain A, Solution Structure Of Apohah1
 pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
          And Hah1 Mediated By Cu(I)
 pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Monomer)
 pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Dimer)
 pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
          Chaperone (Dimer)
          Length = 68

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 42 VSIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGK 95
          V + C GC   V ++L  + GV    IDL   KV ++ + + +TL+  L+K GK
Sbjct: 8  VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60


>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
          Length = 68

 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 42 VSIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGK 95
          V + C GC   V ++L  + GV    IDL   KV ++ + + +TL+  L+K GK
Sbjct: 7  VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 59


>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
          Trimeric Form, His61tyr Mutant)
 pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites: H61y Atx1 Side-To-Side
 pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites: H61y Atx1 Side-To-Side
          Length = 64

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 43 SIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHAE 98
          +I CE C   V K + N D   T ++DL   KV +   +  E L   +   G   E
Sbjct: 9  TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64


>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
 pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
          Length = 63

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 43 SIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHAE 98
          +I CE C   V K + N D   T ++DL   KV +   +  E L   +   G   E
Sbjct: 8  TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63


>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
          Metallochaperone, Scatx1
 pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
          Form)
 pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
          Form)
 pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
          Form)
 pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
          Form)
 pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites:atx1 Side-To-Side (Aerobic)
 pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites:atx1 Side-To-Side (Aerobic)
 pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
 pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
          Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
          Length = 64

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 43 SIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHAE 98
          +I CE C   V K + N D   T ++DL   KV +   +  E L   +   G   E
Sbjct: 9  TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64


>pdb|1CC7|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|1CC8|A Chain A, Crystal Structure Of The Atx1 Metallochaperone Protein
 pdb|2GGP|A Chain A, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
 pdb|1FES|A Chain A, Solution Structure Of The Apo Form Of The Yeast
          Metallochaperone, Atx1
 pdb|3K7R|A Chain A, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|B Chain B, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|C Chain C, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|D Chain D, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|E Chain E, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|F Chain F, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|G Chain G, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|H Chain H, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|I Chain I, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|J Chain J, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|K Chain K, Crystal Structure Of [tm][cuatx1]3
 pdb|3K7R|L Chain L, Crystal Structure Of [tm][cuatx1]3
          Length = 73

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 36 KTWVLRVSIHCEGCKRKVHKILTNID-GVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNG 94
          K +   V + C GC   V+K+LT ++  V    I L +  V V   +  + ++ K++K G
Sbjct: 5  KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTG 64

Query: 95 K 95
          K
Sbjct: 65 K 65


>pdb|1U3H|A Chain A, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
           Class Ii I-Au Molecule At 2.4 A
 pdb|1U3H|E Chain E, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
           Class Ii I-Au Molecule At 2.4 A
          Length = 110

 Score = 28.5 bits (62), Expect = 7.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 321 SYNTAHPRPGYTTSYYTAPTPNSYAYMHAGTGSEI 355
           S + A  +PG + +Y+ A + NS  Y   GTG+++
Sbjct: 72  SLHIADSQPGDSATYFCAASANSGTYQRFGTGTKL 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.126    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,187,404
Number of Sequences: 62578
Number of extensions: 309274
Number of successful extensions: 520
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 12
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)