BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016666
         (385 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 40  LRVSIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKL-EKNGKHAE 98
           ++V + CEGC+RKV + +  + GV +  ++ + HKV V G V    ++ ++  + GK  E
Sbjct: 30  IKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVE 89

Query: 99  LWP 101
           LWP
Sbjct: 90  LWP 92


>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
           SV=1
          Length = 961

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 39  VLRVSIHCEGCKRKVHKILTNIDGVYTTKIDLRQHKVVVKGDVAAETLIGKLEKNGKHAE 98
           +L   + C  C  KV   L  +DGV   +++L +   +V G    E LI  ++  G  AE
Sbjct: 230 LLLTGMSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAE 289

Query: 99  LWPESKAEQKEKKQSKGKNKEKQQQQQ 125
           +  E + E++E++Q   +   K+ Q Q
Sbjct: 290 I-IEDEGERRERQQQMSQASMKRFQWQ 315


>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
           GN=INO80 PE=3 SV=1
          Length = 1662

 Score = 39.3 bits (90), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 52/154 (33%)

Query: 272 AGSPMYGPHGPTHAP-FPFPASYSPPRQHGYPY-------------PQYAPP------PH 311
           AG P YG H PT  P +P   SYSP  +   PY             P +APP      PH
Sbjct: 2   AGVPPYGMHSPTQQPRYP---SYSPSTRDRQPYSGNDPYQHPPRTPPSFAPPSSLSRSPH 58

Query: 312 Y---------YTPPVYATSYNTA-----HPRPGYTTSYYTAPTPNSYAYMHA-------- 349
           +           PP+  T  N       H   G  TS YT P P   + M A        
Sbjct: 59  FARPPSPMNTTLPPLNGTVVNADGSPPYHGHSGSATSGYTLPRPFGGSLMSATSHSPPPS 118

Query: 350 ---GTGSEIPPSDV-DSYSSQP---SDSFEIFSD 376
               +GS   PS++ DS+S  P   S+ +++ SD
Sbjct: 119 YSHASGSHSHPSNIPDSFSQSPKRESEPYDVRSD 152


>sp|Q80XC3|US6NL_MOUSE USP6 N-terminal-like protein OS=Mus musculus GN=Usp6nl PE=1 SV=2
          Length = 819

 Score = 36.2 bits (82), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 39/214 (18%)

Query: 130 QGDQESSDEGNKNPA-EKETVKEPSKSKENGNGGAGTSKNVENNGAVHHVIKVNEVGGQI 188
           Q  ++S DEG+KN   E E+ ++PS   ++ +     +   +N+ A+ +V K  E   + 
Sbjct: 428 QSRRKSVDEGSKNLKHEAESQRKPSPGMQDSSRHYNHAAANQNSNAISNVRK--EFMPKW 485

Query: 189 AKESKPDQVKQTVTFAAGGQS-------PVGDKKAGDSESEGGVEKSGGGGGSGGKKKKK 241
            K S    +++T  +A  G+S       PV    + ++      +K     G  GK+   
Sbjct: 486 RKPSDASAIERTTKYAVEGKSHSALPALPVAIPGSAETRLPNSRQKMKALDGGEGKR--- 542

Query: 242 KGHKGNNGNSNVVIGGGEPFGGVGGDAPAGAGSPMYGPHGPTHAPFP----------FPA 291
               G+N +    + GGE   G    A A  G     PH P   P P          F  
Sbjct: 543 ----GSNASQYDNVPGGESEHG----ASAEEGPERTHPHSPRKHPEPSPSPPKVPNKFTF 594

Query: 292 SYSPPRQHGYPYPQY-------APPPHYYTPPVY 318
              PP    YP PQ        A PP Y  PPVY
Sbjct: 595 KVQPPSHVRYP-PQLPEEDHRAAYPPSYSNPPVY 627


>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
            GN=ama-1 PE=1 SV=3
          Length = 1856

 Score = 32.3 bits (72), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 274  SPMYGPHGPTHAPFPFPASYSPPRQHGYPYPQYAPPPHYYTPPVYATSYNTAHPRPGYTT 333
            SP Y P  PT+   P   +Y+P    G+  PQY+P    Y+P   + SY  + P+   T+
Sbjct: 1752 SPQYSPSSPTYT--PSSPTYNPTSPRGFSSPQYSPTSPTYSPT--SPSYTPSSPQYSPTS 1807

Query: 334  SYYTAPTPN 342
              YT P+P+
Sbjct: 1808 PTYT-PSPS 1815


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.304    0.127    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,852,425
Number of Sequences: 539616
Number of extensions: 10024192
Number of successful extensions: 123626
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 2523
Number of HSP's that attempted gapping in prelim test: 62925
Number of HSP's gapped (non-prelim): 34447
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 62 (28.5 bits)