Query 016667
Match_columns 385
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07168 Ureide_permease: Urei 100.0 5E-140 1E-144 1016.8 23.1 333 14-355 1-336 (336)
2 PRK13499 rhamnose-proton sympo 100.0 5.5E-36 1.2E-40 295.7 10.3 270 5-351 3-289 (345)
3 PF06800 Sugar_transport: Suga 99.7 6.4E-16 1.4E-20 149.3 11.7 211 39-355 13-228 (269)
4 TIGR00776 RhaT RhaT L-rhamnose 99.6 3.7E-15 8E-20 142.2 8.0 240 10-355 2-245 (290)
5 COG4975 GlcU Putative glucose 98.5 7.2E-08 1.6E-12 93.8 3.7 237 10-355 3-242 (288)
6 PF07857 DUF1632: CEO family ( 98.5 1E-07 2.2E-12 92.1 4.1 130 11-160 2-136 (254)
7 PF06379 RhaT: L-rhamnose-prot 98.4 1E-06 2.2E-11 88.5 9.5 263 6-342 4-284 (344)
8 PF06800 Sugar_transport: Suga 94.5 0.058 1.2E-06 53.2 5.3 121 10-151 139-262 (269)
9 PRK13499 rhamnose-proton sympo 93.5 0.11 2.5E-06 52.7 5.3 102 235-356 4-111 (345)
10 TIGR03340 phn_DUF6 phosphonate 92.2 1.1 2.4E-05 42.5 9.6 130 10-155 2-132 (281)
11 PF07857 DUF1632: CEO family ( 91.5 0.28 6.1E-06 48.0 4.9 65 281-362 31-99 (254)
12 TIGR00950 2A78 Carboxylate/Ami 90.7 2 4.3E-05 39.4 9.3 115 21-155 1-116 (260)
13 PF00892 EamA: EamA-like trans 89.6 0.082 1.8E-06 42.1 -0.5 122 19-155 1-123 (126)
14 TIGR00776 RhaT RhaT L-rhamnose 89.0 1.3 2.9E-05 42.8 7.1 93 239-357 2-98 (290)
15 PRK15430 putative chlorampheni 88.9 0.31 6.8E-06 46.7 2.8 103 5-117 4-106 (296)
16 PRK10532 threonine and homoser 74.3 6.3 0.00014 37.8 5.4 93 6-114 9-101 (293)
17 COG4975 GlcU Putative glucose 74.1 14 0.00029 37.3 7.6 74 82-158 207-285 (288)
18 TIGR00688 rarD rarD protein. T 65.3 3.8 8.3E-05 38.1 1.8 131 10-148 3-134 (256)
19 PRK11272 putative DMT superfam 63.5 1.4E+02 0.0031 28.6 12.4 49 10-58 9-57 (292)
20 TIGR03340 phn_DUF6 phosphonate 59.0 17 0.00038 34.5 5.0 70 83-155 210-280 (281)
21 PF06379 RhaT: L-rhamnose-prot 49.8 68 0.0015 33.3 7.8 101 235-355 4-110 (344)
22 PRK11453 O-acetylserine/cystei 44.9 2.3E+02 0.0051 27.2 10.3 38 11-48 6-43 (299)
23 PF09769 ApoO: Apolipoprotein 43.2 8.7 0.00019 34.4 0.3 30 127-160 82-111 (158)
24 COG2832 Uncharacterized protei 41.3 22 0.00048 31.8 2.5 66 273-341 23-92 (119)
25 TIGR00805 oat sodium-independe 38.2 3.7E+02 0.0079 29.3 11.5 35 125-160 85-119 (633)
26 TIGR00817 tpt Tpt phosphate/ph 37.3 1.6E+02 0.0034 28.2 7.8 62 93-157 230-292 (302)
27 COG0697 RhaT Permeases of the 36.7 3.2E+02 0.007 24.7 11.9 135 8-156 6-141 (292)
28 PRK13460 F0F1 ATP synthase sub 36.2 33 0.00071 31.1 2.8 36 269-305 6-42 (173)
29 PRK10263 DNA translocase FtsK; 36.2 1.2E+02 0.0025 36.8 7.8 90 266-360 61-160 (1355)
30 KOG3787 Glutamate/aspartate an 34.9 31 0.00068 37.2 2.8 56 45-100 192-252 (507)
31 PRK15430 putative chlorampheni 31.4 1.8E+02 0.0039 28.0 7.1 102 235-356 5-107 (296)
32 COG1294 AppB Cytochrome bd-typ 31.4 1.2E+02 0.0026 31.5 6.2 94 8-107 89-188 (346)
33 PLN00411 nodulin MtN21 family 30.8 91 0.002 31.7 5.2 137 10-158 190-328 (358)
34 PRK11689 aromatic amino acid e 30.5 1.1E+02 0.0024 29.4 5.6 44 9-52 4-47 (295)
35 PRK11056 hypothetical protein; 29.6 89 0.0019 28.1 4.3 15 236-250 8-22 (120)
36 COG2116 FocA Formate/nitrite f 29.5 1E+02 0.0022 30.9 5.2 83 233-320 24-112 (265)
37 TIGR00939 2a57 Equilibrative N 25.4 2E+02 0.0042 30.1 6.7 23 137-159 171-193 (437)
38 PRK13454 F0F1 ATP synthase sub 25.4 48 0.001 30.5 2.0 37 269-306 19-58 (181)
39 PF13536 EmrE: Multidrug resis 24.7 51 0.0011 27.3 1.9 82 68-158 23-106 (113)
40 PF06609 TRI12: Fungal trichot 24.4 2.6E+02 0.0057 30.9 7.6 160 124-349 98-264 (599)
41 PRK11453 O-acetylserine/cystei 23.5 2E+02 0.0043 27.7 5.9 26 9-34 143-168 (299)
42 PF09946 DUF2178: Predicted me 22.3 2.3E+02 0.005 24.5 5.5 23 223-245 52-74 (111)
43 KOG2736 Presenilin [Signal tra 22.2 3E+02 0.0064 29.4 7.1 63 222-291 313-393 (406)
No 1
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=100.00 E-value=4.9e-140 Score=1016.78 Aligned_cols=333 Identities=66% Similarity=1.097 Sum_probs=314.8
Q ss_pred HHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCC---CCCcchHhhhhhcccCchhHHHHHHH
Q 016667 14 MLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFG---DARPNFVYQLTELKDNWPSVLFAMAG 90 (385)
Q Consensus 14 m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG---~~~~nFl~qL~Q~~~~~~sv~~AmaG 90 (385)
|++||+|||||||+|||+|||||+||||||||+|||+|+|+++|||+||+| +++|||++||+| |||||+++||+|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q--~n~~sv~~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQ--ANWPSVLFAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhc--CChHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999 567999999999 999999999999
Q ss_pred HHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCceeeEcchhHHHHHHHHHhhhhcccchhchHHh
Q 016667 91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAK 170 (385)
Q Consensus 91 GvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~iLFpGV~cfliAI~L~a~ah~sNaad~~~K 170 (385)
|++||+|||++|||||++||||||||++|||||+||++|||+|||+|||+||||||+||+|||++|+++|+||++|+|+|
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah~sn~~d~~~k 158 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAHKSNAADNKAK 158 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHHHHHh
Q 016667 171 LNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCF 250 (385)
Q Consensus 171 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~aG~~~ 250 (385)
+++++++++..+.++ .+...+.++||+|++. ++|+|+|||+||+|+|+||||||+||++++|+.|++++|+|+
T Consensus 159 l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~gta~~l~~le~~rsikv~g~~~~~Gl~i~~faG~c~ 231 (336)
T PF07168_consen 159 LKNFPNSYSRSTVSS-----AEMGFELESKDLENGE--AEKAKAGTAEFLIELENKRSIKVFGSSTLIGLGIAFFAGLCF 231 (336)
T ss_pred hhcCCCccccccccc-----cccccccCccchhcCC--cccccccHHHHHHHHHhhhhhhhccccceeeehHHHHHhHHH
Confidence 987644343333222 2223333677777665 789999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHH
Q 016667 251 SLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGL 330 (385)
Q Consensus 251 s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~ 330 (385)
|+|||+||+|||||||+|+||||||+|||||||||++||++++++|++|||||++|.||||+++|++||+||.||+|||+
T Consensus 232 slFSPafNlAtNDqwhtL~~gvP~L~VYtafFyFs~s~fv~~~~lni~~Ly~P~~g~p~Ssl~ay~~D~~gR~wa~lAG~ 311 (336)
T PF07168_consen 232 SLFSPAFNLATNDQWHTLKPGVPHLVVYTAFFYFSLSCFVVAIILNIWFLYRPVLGVPKSSLKAYLKDWNGRGWAFLAGL 311 (336)
T ss_pred HhcCchhhccccccccccCCCCCceEEEeehHHHHHHHHHHHHHHHhhheeccccCCChhhHHHHhhccCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhccccchhhhHHHHHH
Q 016667 331 LCGFGNGLQFMGGQAAGYAAADAVQ 355 (385)
Q Consensus 331 iwg~Gn~lqfmggqaAGyAaAdavq 355 (385)
+||+||++|||||||||||||||||
T Consensus 312 lCg~GNglQFmgGQAaGYAaADaVQ 336 (336)
T PF07168_consen 312 LCGFGNGLQFMGGQAAGYAAADAVQ 336 (336)
T ss_pred HHhCCceeeecccchhhhhhhhhcC
Confidence 9999999999999999999999998
No 2
>PRK13499 rhamnose-proton symporter; Provisional
Probab=100.00 E-value=5.5e-36 Score=295.68 Aligned_cols=270 Identities=15% Similarity=0.127 Sum_probs=232.6
Q ss_pred cchhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667 5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (385)
Q Consensus 5 es~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv 84 (385)
++-...+.+|+++++|||||.+.+|. -|+||+ |.| || +.++ +..++..+|+|+++. |+|.++++| .+...+
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w-E~~-W~-v~gi-~~wl~~~~~~g~~~~--~~f~~~~~~--~~~~~~ 73 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKK-VKKWSW-ETM-WS-VGGI-FSWLILPWLIAALLL--PDFWAYYSS--FSGSTL 73 (345)
T ss_pred chhHHHHHHHHHHHHHhhcccccccc-cCCCch-hHH-HH-HHHH-HHHHHHHHHHHHHHh--hhHHHHHHh--cCHHHH
Confidence 45667899999999999999999998 788999 887 99 6666 799999999999997 999999999 999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeee---------eeecccCCCceeeEcchhHHHHHHHHH
Q 016667 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTF---------NYFLDDKINKAEILFPGIACFLVAVGL 155 (385)
Q Consensus 85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~l---------NYfld~r~n~a~iLFpGV~cfliAI~L 155 (385)
.+++++|+.+++||+....++.+.|+|+++||+.|+++|+||.+ ||+..+++ .+++.||++.+++|++
T Consensus 74 ~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g---~~~~~gv~liliGi~l 150 (345)
T PRK13499 74 LPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGG---RMTLLGVLVALIGVAI 150 (345)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99998888 4599999999999999
Q ss_pred hhhhcccchhchHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcc
Q 016667 156 GSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKS 235 (385)
Q Consensus 156 ~a~ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~ 235 (385)
.+.|+. |.++ + + +++| ++ +++
T Consensus 151 ~s~Ag~--------~k~~--~-~---------------------~~~~--------------------~~-------~~~ 171 (345)
T PRK13499 151 VGRAGQ--------LKER--K-M---------------------GIKK--------------------AE-------EFN 171 (345)
T ss_pred HHHhhh--------hccc--c-c---------------------cccc--------------------cc-------ccc
Confidence 999993 2221 0 0 0000 00 345
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHH---HHHHHHHHHHHHHHhcCcCCCCCcCcH
Q 016667 236 ILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFS---VSGFVIALILNIRFLFSPILDTHRSSF 312 (385)
Q Consensus 236 ~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FS---v~~fv~~~ilN~~lm~~Pv~G~p~ss~ 312 (385)
.+||+++++++|+.++.|+++++.++..+.. .+..+..++|++...+. +|.|++|+++|.+.|++ + ++.+.
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~--a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k---~-~~~~~ 245 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEA--AAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAK---N-KDLSL 245 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhh--hhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C-CCccc
Confidence 7899999999999999999999999863322 35567788999999999 99999999999999998 3 33566
Q ss_pred HHHhhc-----CCCchHHHHHHHHHhhchhhhhccccchhhhHH
Q 016667 313 KAYLND-----WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAA 351 (385)
Q Consensus 313 ~~Y~~d-----~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaA 351 (385)
++|++. ++.|..++|+|++|++||.+.+|+.+++|-+.+
T Consensus 246 ~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~ 289 (345)
T PRK13499 246 KADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYD 289 (345)
T ss_pred chhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 677775 679999999999999999999999998865443
No 3
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.65 E-value=6.4e-16 Score=149.32 Aligned_cols=211 Identities=20% Similarity=0.263 Sum_probs=157.3
Q ss_pred eeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccC--chhHHHHHHHHHHHhhHHHHHHHHHHhhcceeeeee
Q 016667 39 QHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDN--WPSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVI 116 (385)
Q Consensus 39 qh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~--~~sv~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi 116 (385)
..=-+--++|.++++++..+. .|++-+ ..+++.++++|+.+++||+....+....|+|.|+|+
T Consensus 13 ~~Q~lG~t~Gali~alv~~~~---------------~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi 77 (269)
T PF06800_consen 13 ANQILGTTIGALIFALVVFLF---------------RQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI 77 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence 333445566777777666654 232233 478999999999999999999999999999999999
Q ss_pred ccceeeeeeeeeee--ecccCCCc-eeeEcchhHHHHHHHHHhhhhcccchhchHHhhcCCCCCCCCCCCccccCCcCCC
Q 016667 117 SSSITVVIGSTFNY--FLDDKINK-AEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCET 193 (385)
Q Consensus 117 ~~glavViGt~lNY--fld~r~n~-a~iLFpGV~cfliAI~L~a~ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~ 193 (385)
+.|+.+|.++.+++ |.|-+..+ ..+-+.+++++++.++|.+... |-+ +
T Consensus 78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~---------~~~-----~--------------- 128 (269)
T PF06800_consen 78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD---------KKS-----D--------------- 128 (269)
T ss_pred chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc---------ccc-----c---------------
Confidence 99999999999886 67666533 2334667777777777776522 110 0
Q ss_pred CCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCC
Q 016667 194 LPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVP 273 (385)
Q Consensus 194 ~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~ 273 (385)
++++ +++.+||+...+++.+-+ .+|+.+..+ .
T Consensus 129 ------~~~~-----------------------------~~~~~kgi~~Ll~stigy-~~Y~~~~~~------------~ 160 (269)
T PF06800_consen 129 ------KSSS-----------------------------KSNMKKGILALLISTIGY-WIYSVIPKA------------F 160 (269)
T ss_pred ------cccc-----------------------------ccchhhHHHHHHHHHHHH-HHHHHHHHh------------c
Confidence 0000 224578888877766655 557766555 4
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHHHHhhchhhhhccccchhhhHHHH
Q 016667 274 HLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADA 353 (385)
Q Consensus 274 ~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaAda 353 (385)
+.++|+++|-.|+|.++.++++|... ++|+.. +.++..+++|++|++||.+.+++.+..|+|+|+.
T Consensus 161 ~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~-------------k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~ 226 (269)
T PF06800_consen 161 HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFE-------------KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFT 226 (269)
T ss_pred CCChhHhHHHHHHHHHHHHHHHhhcc-cccccc-------------cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhh
Confidence 56799999999999999999999887 444322 2466789999999999999999999999999998
Q ss_pred HH
Q 016667 354 VQ 355 (385)
Q Consensus 354 vq 355 (385)
+-
T Consensus 227 lS 228 (269)
T PF06800_consen 227 LS 228 (269)
T ss_pred HH
Confidence 64
No 4
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.57 E-value=3.7e-15 Score=142.21 Aligned_cols=240 Identities=17% Similarity=0.235 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama 89 (385)
.+.+++++++||||++...|... +..|++.. +-+++.++..++.+++- . |. . +++..+.++++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~-~~~~g~l~~~~~~~~~~----~--~~------~--~~~~~~~~g~l 64 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL-GTTFGALILSIAIAIFV----L--PE------F--WALSIFLVGLL 64 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH-HHHHHHHHHHHHHHHHh----C--Cc------c--cccHHHHHHHH
Confidence 47899999999999999999877 44555554 67777777777776631 0 11 1 44678889999
Q ss_pred HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeec--ccCC-CceeeEcchhHHHHHHHHHhhhhcccchhc
Q 016667 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL--DDKI-NKAEILFPGIACFLVAVGLGSAVHSSNAAD 166 (385)
Q Consensus 90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfl--d~r~-n~a~iLFpGV~cfliAI~L~a~ah~sNaad 166 (385)
+|+.+++||++...++...|+|+|+|+..++..++++...++. |.+. .+..+...|+++.++.+++-+..+
T Consensus 65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~------ 138 (290)
T TIGR00776 65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK------ 138 (290)
T ss_pred HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc------
Confidence 9999999999999999999999999999999999998888763 2222 123344566666666666642211
Q ss_pred hHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHH
Q 016667 167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA 246 (385)
Q Consensus 167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~a 246 (385)
. + + .++.+ .++.+||+..++++
T Consensus 139 ----~----~-~--------------------~~~~~-----------------------------~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 139 ----D----K-S--------------------AGIKS-----------------------------EFNFKKGILLLLMS 160 (290)
T ss_pred ----c----c-c--------------------ccccc-----------------------------ccchhhHHHHHHHH
Confidence 0 0 0 00000 01346899999999
Q ss_pred HHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHH
Q 016667 247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL 326 (385)
Q Consensus 247 G~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~ 326 (385)
|+++++..-+.... +.+|++..|...++.++.+.++|....++ .| + . .+.-+..+
T Consensus 161 g~~y~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~------~-~-~~~~~~~~ 215 (290)
T TIGR00776 161 TIGYLVYVVVAKAF-------------GVDGLSVLLPQAIGMVIGGIIFNLGHILA----KP------L-K-KYAILLNI 215 (290)
T ss_pred HHHHHHHHHHHHHc-------------CCCcceehhHHHHHHHHHHHHHHHHHhcc----cc------h-H-HHHHHHHH
Confidence 99997766554422 15689999999999999999999766211 11 1 1 11223477
Q ss_pred HHHHHHhhchhhhhcccc-chhhhHHHHHH
Q 016667 327 LAGLLCGFGNGLQFMGGQ-AAGYAAADAVQ 355 (385)
Q Consensus 327 LaG~iwg~Gn~lqfmggq-aAGyAaAdavq 355 (385)
+.|++|++++.+.+++.+ ..|++.+.-+-
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls 245 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLS 245 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHH
Confidence 799999999999999998 88887776543
No 5
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.50 E-value=7.2e-08 Score=93.75 Aligned_cols=237 Identities=19% Similarity=0.260 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama 89 (385)
.+..-++-++.||+-|-+ +.+++--|++-.+--+++-+++|++..+. .+|--++..+.+++.
T Consensus 3 ~~liaL~P~l~WGsip~v---~~k~GG~p~qQ~lGtT~GALifaiiv~~~---------------~~p~~T~~~~iv~~i 64 (288)
T COG4975 3 DLLIALLPALGWGSIPLV---ANKFGGKPYQQTLGTTLGALIFAIIVFLF---------------VSPELTLTIFIVGFI 64 (288)
T ss_pred hHHHHHHHHHHhccccee---eeecCCChhHhhhhccHHHHHHHHHHhee---------------ecCccchhhHHHHHH
Confidence 355667889999998865 45556667888899999999999998876 122266779999999
Q ss_pred HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCcee---eEcchhHHHHHHHHHhhhhcccchhc
Q 016667 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAE---ILFPGIACFLVAVGLGSAVHSSNAAD 166 (385)
Q Consensus 90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~---iLFpGV~cfliAI~L~a~ah~sNaad 166 (385)
+|...++|.+.-.=|+.+.|.|.|.|++.|.=+|.++..--|.=..=.++. +=|..++++++.+.+.+.-
T Consensus 65 sG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~------- 137 (288)
T COG4975 65 SGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ------- 137 (288)
T ss_pred hhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee-------
Confidence 999999999999999999999999999999999887776655322111111 1122233333333333220
Q ss_pred hHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccchhHHHHHHH
Q 016667 167 NKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILIGLAITFFA 246 (385)
Q Consensus 167 ~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~Gl~ia~~a 246 (385)
+ +++||+|+ .++-+||+.+-++.
T Consensus 138 ---~--------------------------~~nk~~~~----------------------------~~n~kkgi~~L~iS 160 (288)
T COG4975 138 ---D--------------------------RNNKEEEN----------------------------PSNLKKGIVILLIS 160 (288)
T ss_pred ---c--------------------------cccccccC----------------------------hHhhhhheeeeeee
Confidence 0 01122221 22345676664443
Q ss_pred HHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHH
Q 016667 247 GVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWAL 326 (385)
Q Consensus 247 G~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~ 326 (385)
++.|-.+.... +.+. -...+|.+--|+|-.+++++++..=| ++++.=..|+ -+
T Consensus 161 ----t~GYv~yvvl~-~~f~--------v~g~saiLPqAiGMv~~ali~~~~~~------~~~~~K~t~~--------ni 213 (288)
T COG4975 161 ----TLGYVGYVVLF-QLFD--------VDGLSAILPQAIGMVIGALILGFFKM------EKRFNKYTWL--------NI 213 (288)
T ss_pred ----ccceeeeEeee-cccc--------ccchhhhhHHHHHHHHHHHHHhhccc------ccchHHHHHH--------HH
Confidence 33444333332 2222 23567888889999999999886543 2322222333 58
Q ss_pred HHHHHHhhchhhhhccccchhhhHHHHHH
Q 016667 327 LAGLLCGFGNGLQFMGGQAAGYAAADAVQ 355 (385)
Q Consensus 327 LaG~iwg~Gn~lqfmggqaAGyAaAdavq 355 (385)
+-|++|++||-+-+++.|++|-|.+..+-
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlS 242 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVGVATSFSLS 242 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhceeeeeeHh
Confidence 89999999999999999999999988753
No 6
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=98.48 E-value=1e-07 Score=92.07 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=101.8
Q ss_pred HHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHH
Q 016667 11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAG 90 (385)
Q Consensus 11 I~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaG 90 (385)
+++|++|.++.||--.=.|-.+.. -+-.+-|=-++++++.++++.+..+. | +-.-.||+|
T Consensus 2 ~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~-----p-------------~f~p~amlg 61 (254)
T PF07857_consen 2 YIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF-----P-------------PFYPWAMLG 61 (254)
T ss_pred chhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC-----C-------------cceeHHHhh
Confidence 468999999999998888765543 24577788999999999998887433 1 234589999
Q ss_pred HHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeee---eecc-c-CCCceeeEcchhHHHHHHHHHhhhhc
Q 016667 91 GVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFN---YFLD-D-KINKAEILFPGIACFLVAVGLGSAVH 160 (385)
Q Consensus 91 GvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lN---Yfld-~-r~n~a~iLFpGV~cfliAI~L~a~ah 160 (385)
|.++..||++..-.+--+||+++..+-.+..++.|=..- .|.. + ...++.+=..|++|.++...+=+..-
T Consensus 62 G~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 62 GALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 999999999999999999999999999988888875443 3422 2 33356666889999988888776654
No 7
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=98.42 E-value=1e-06 Score=88.48 Aligned_cols=263 Identities=19% Similarity=0.260 Sum_probs=174.2
Q ss_pred chhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhH-HHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667 6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDY-TMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (385)
Q Consensus 6 s~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY-~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv 84 (385)
+.-..|++.++.=+|-||.-.=+|-. |+|.. |-+..=. .+.-+++-.+.|+. ..|+|.+-++| .+.+.+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~WsW-Es~Wlv~gi~swli~P~~~a~l------~ip~~~~i~~~--~~~~~l 73 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWSW-ESYWLVQGIFSWLIVPWLWALL------AIPDFFSIYSA--TPASTL 73 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCccH-HHHHHHHHHHHHHHHHHHHHHH------hCCcHHHHHHh--CChhHH
Confidence 34567888888889999988777753 33554 4332222 23334444555554 14899999999 888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeecccC------CCceeeEcchhHHHHHHHHHhhh
Q 016667 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDK------INKAEILFPGIACFLVAVGLGSA 158 (385)
Q Consensus 85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r------~n~a~iLFpGV~cfliAI~L~a~ 158 (385)
+.+++=|+..-+|++----++.+.|+|.+..|..|++.++||.+-=+.+++ .+.-.++..||+..++.|.+.+.
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999994443322 22345788999999999999988
Q ss_pred hcccchhchHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCCCCCCccccccccccchhhhhhccccccccCcccch
Q 016667 159 VHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPEVGNDTVGKLKAGTAGFLVEIENRRSIKVFGKSILI 238 (385)
Q Consensus 159 ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e~~~~~~~~~~~gta~~l~~le~~rsikv~~~~~~~ 238 (385)
|-. .|-++. + + + +.+++-+|
T Consensus 154 AG~-------~Ke~~~-~-~----------------------~-----------------------------~~efn~~k 173 (344)
T PF06379_consen 154 AGS-------MKEKEL-G-E----------------------E-----------------------------AKEFNFKK 173 (344)
T ss_pred HHH-------hhhhhh-c-c----------------------c-----------------------------hhhhhhhh
Confidence 763 111100 0 0 0 00335679
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCcccc-chhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhh
Q 016667 239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIV-YTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLN 317 (385)
Q Consensus 239 Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~Ltp-YTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~ 317 (385)
||+|++++|++=+.|+-..+.+....-...+.|++.+-. =-++++-=.|-|+.|++.-.+.+.+ . +.-|+++|++
T Consensus 174 Gl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~---~-k~~s~~~d~~ 249 (344)
T PF06379_consen 174 GLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAK---N-KNWSWKGDYS 249 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhh---c-CCCccccccc
Confidence 999999999987777766655443222222334443322 1234555568888888766555432 1 1134555543
Q ss_pred cC-----CCchHHHHHHHHHhh-----chhhhhcc
Q 016667 318 DW-----NGRGWALLAGLLCGF-----GNGLQFMG 342 (385)
Q Consensus 318 d~-----~gr~~a~LaG~iwg~-----Gn~lqfmg 342 (385)
.. +.-.++.|+|.+|=. |++=++|+
T Consensus 250 ~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg 284 (344)
T PF06379_consen 250 VAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLG 284 (344)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 245678899999954 55556666
No 8
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.54 E-value=0.058 Score=53.20 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama 89 (385)
.+.+.++|-+.......+.|+..-++ ....+--++|+++.++++.+-. . +++.+ +..+..++
T Consensus 139 gi~~Ll~stigy~~Y~~~~~~~~~~~---~~~~lPqaiGm~i~a~i~~~~~------~----~~~~~-----k~~~~nil 200 (269)
T PF06800_consen 139 GILALLISTIGYWIYSVIPKAFHVSG---WSAFLPQAIGMLIGAFIFNLFS------K----KPFFE-----KKSWKNIL 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCh---hHhHHHHHHHHHHHHHHHhhcc------c----ccccc-----cchHHhhH
Confidence 45555556555555666666643322 4455566899999999998754 1 11122 34566789
Q ss_pred HHHHHhhHHHHHHHHHHhhcceeeeeec---cceeeeeeeeeeeecccCCCceeeEcchhHHHHH
Q 016667 90 GGVVLSIGNLATQYAWAFVGLSVTEVIS---SSITVVIGSTFNYFLDDKINKAEILFPGIACFLV 151 (385)
Q Consensus 90 GGvvfnlgNl~lq~aia~aGLSVa~pi~---~glavViGt~lNYfld~r~n~a~iLFpGV~cfli 151 (385)
+|+++++||+....+..-.|.+++++++ +-++..-|.. ++.|.|. |.|+.+..++|+++
T Consensus 201 ~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~--il~E~Kt-~ke~~~~~~G~~Li 262 (269)
T PF06800_consen 201 TGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIF--ILKEKKT-KKEMIYTLIGLILI 262 (269)
T ss_pred HHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhhe--EEEecCc-hhhHHHHHHHHHHH
Confidence 9999999999999999999999999987 3333333433 4667777 45777666665554
No 9
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.55 E-value=0.11 Score=52.69 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=68.6
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHH
Q 016667 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKA 314 (385)
Q Consensus 235 ~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~ 314 (385)
+...|++..+++++|.|.||=-+.+.-+=+|++ ||. ++.++.-++ ..+.+- ..+.| ++-+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~--------------~W~-v~gi~~wl~-~~~~~g--~~~~~--~f~~ 63 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWET--------------MWS-VGGIFSWLI-LPWLIA--ALLLP--DFWA 63 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccccCCCchhH--------------HHH-HHHHHHHHH-HHHHHH--HHHhh--hHHH
Confidence 467899999999999999998777754445552 355 444433333 332222 12333 6667
Q ss_pred HhhcC--CCchHHHHHHHHHhhchhhhhccccchhhh----HHHHHHH
Q 016667 315 YLNDW--NGRGWALLAGLLCGFGNGLQFMGGQAAGYA----AADAVQV 356 (385)
Q Consensus 315 Y~~d~--~gr~~a~LaG~iwg~Gn~lqfmggqaAGyA----aAdavqa 356 (385)
+++.. ..-.+++++|++|++||.+|+.+=+..|-+ ++-..|.
T Consensus 64 ~~~~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~l 111 (345)
T PRK13499 64 YYSSFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITL 111 (345)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHH
Confidence 77733 388899999999999999999876666554 4555554
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=92.25 E-value=1.1 Score=42.52 Aligned_cols=130 Identities=12% Similarity=0.171 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama 89 (385)
++.+-+++.+||-.|-...|-..++ ++...||.. .+.+.++..+.+-.. .++.+ +. .++......++
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~----~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~----~~--~~~~~~~~~~~ 68 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADK----EPDFLWWAL-LAHSVLLTPYGLWYL--AQVGW----SR--LPATFWLLLAI 68 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCc----hhHHHHHHH-HHHHHHHHHHHHHhc--ccCCC----CC--cchhhHHHHHH
Confidence 5788899999999999988843333 222235444 221222222332110 01111 11 12223345666
Q ss_pred HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHH
Q 016667 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGL 155 (385)
Q Consensus 90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L 155 (385)
+|+.....+.++.++......+++.|+.... -++-+++-++ .++|.++.++ .|+++.++.+++
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~-p~~~~l~~~~~~~e~~~~~~~--~g~~~~~~Gv~l 132 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSS-PLLVAIWATLTLGETLSPLAW--LGILIITLGLLV 132 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhh-HHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHH
Confidence 7777778888999999999999988876543 3333333333 4566655454 377777766655
No 11
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.55 E-value=0.28 Score=47.97 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhcCCCchHHHHHHHHHhhchhhhhccccchhhhHHHHH----HH
Q 016667 281 FFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAV----QV 356 (385)
Q Consensus 281 ~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaAdav----qa 356 (385)
-++.|.++|+.+++.|.+. +.|+ =+.||+|||++|+.||.+..-.=+.+|-+.+-.+ +.
T Consensus 31 Qw~~~~~i~~~g~~v~~~~------~~p~-----------f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~ 93 (254)
T PF07857_consen 31 QWVMCSGIFLVGLVVNLIL------GFPP-----------FYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNC 93 (254)
T ss_pred HHHHHHHHHHHHHHHHHhc------CCCc-----------ceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHH
Confidence 4678999999999999874 2231 4789999999999999999887777777777654 44
Q ss_pred HHhhcc
Q 016667 357 SFNACK 362 (385)
Q Consensus 357 ~~~~~~ 362 (385)
+..+|.
T Consensus 94 l~Gw~~ 99 (254)
T PF07857_consen 94 LTGWAS 99 (254)
T ss_pred HHHHHH
Confidence 555553
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=90.71 E-value=2 Score=39.39 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=65.0
Q ss_pred hcChHHHHHh-hhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHHHHHHhhHHH
Q 016667 21 LGTWPAIMTL-LERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGNL 99 (385)
Q Consensus 21 wGTWpn~~kL-~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaGGvvfnlgNl 99 (385)
||+=....|. ++.....-+..++-+.++.++...+.-.. .+.+ +.......|++.+.+.++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~------~~~~~~~~~~~~~~l~~~ 62 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------------PPLK------RLLRLLLLGALQIGVFYV 62 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHh------HHHHHHHHHHHHHHHHHH
Confidence 5554445555 44433332456666666666554433221 1111 234567778888899999
Q ss_pred HHHHHHHhhcceeeeeeccceeeeeeeeeeeecccCCCceeeEcchhHHHHHHHHH
Q 016667 100 ATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDDKINKAEILFPGIACFLVAVGL 155 (385)
Q Consensus 100 ~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~r~n~a~iLFpGV~cfliAI~L 155 (385)
+..+|....+.+.+-++....-+..-..-.-+..+|.++.++ .|+.+-++.+++
T Consensus 63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~--~gi~i~~~Gv~l 116 (260)
T TIGR00950 63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVL--LAAVLGLAGAVL 116 (260)
T ss_pred HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHH--HHHHHHHHhHHh
Confidence 999999998888775554322222222223345567755444 466666666655
No 13
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=89.63 E-value=0.082 Score=42.05 Aligned_cols=122 Identities=14% Similarity=0.247 Sum_probs=76.1
Q ss_pred HhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHHHHHHHhhHH
Q 016667 19 FFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMAGGVVLSIGN 98 (385)
Q Consensus 19 lcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~AmaGGvvfnlgN 98 (385)
+|||+.....|..-++...++.+.|.+.++.. ..++..+. ++.. ..+.+. . ........|++...+++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~------~~~~~~--~--~~~~~~~~~~~~~~~~~ 68 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLIL-GRKP------FKNLSP--R--QWLWLLFLGLLGTALAY 68 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhh-cccc------ccCCCh--h--hhhhhhHhhccceehHH
Confidence 58999999999888776666777777777765 22222222 2221 111111 1 22334555666678899
Q ss_pred HHHHHHHHhhcceeeeeeccceeeeeeeeeeeeccc-CCCceeeEcchhHHHHHHHHH
Q 016667 99 LATQYAWAFVGLSVTEVISSSITVVIGSTFNYFLDD-KINKAEILFPGIACFLVAVGL 155 (385)
Q Consensus 99 l~lq~aia~aGLSVa~pi~~glavViGt~lNYfld~-r~n~a~iLFpGV~cfliAI~L 155 (385)
++.+++....+.+.+-++.. +..++..++-++.-+ +.+ ..-..|+.+.++++++
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~--~~~~~g~~l~~~g~~l 123 (126)
T PF00892_consen 69 LLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS--WRQIIGIILIIIGVVL 123 (126)
T ss_pred HHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHH
Confidence 99999999999888887765 455566666655433 332 2335566666666655
No 14
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=89.00 E-value=1.3 Score=42.83 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHHHhhc
Q 016667 239 GLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKAYLND 318 (385)
Q Consensus 239 Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d 318 (385)
|+++++++++|.|.++....... +|. +.-.. -..++.++.....-. .+.| + .++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~----------~~~~~-~~~~g~l~~~~~~~~--~~~~-----~------~~~ 55 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGP----------YSQTL-GTTFGALILSIAIAI--FVLP-----E------FWA 55 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCH----------HHHHH-HHHHHHHHHHHHHHH--HhCC-----c------ccc
Confidence 67899999999999999886653 222 11111 133344433333222 2323 1 122
Q ss_pred CCCchHHHHHHHHHhhchhhhhccccchhhhHH----HHHHHH
Q 016667 319 WNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAA----DAVQVS 357 (385)
Q Consensus 319 ~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaA----davqa~ 357 (385)
+.--.+++++|++|++||-++|.+=+..|.+.| ...|-.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v 98 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLV 98 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHH
Confidence 345577999999999999999999999999999 656543
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=88.89 E-value=0.31 Score=46.70 Aligned_cols=103 Identities=9% Similarity=0.044 Sum_probs=68.7
Q ss_pred cchhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhH
Q 016667 5 ESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSV 84 (385)
Q Consensus 5 es~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv 84 (385)
+++.-++++++++.++||+-+...|++++-... |...+.+.++.++...+.... ++ .+.+.++ . .+++..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~~~~~~~-~~~~~R~~~a~~~l~~~~~~~-~~----~~~~~~~--~--~~~~~~ 73 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLIYYVPAD-EILTHRVIWSFFFMVVLMSIC-RQ----WSYLKTL--I--QTPQKI 73 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHH-cc----HHHHHHH--H--cCHHHH
Confidence 355667899999999999999999987542322 677788887755443333222 21 1112111 1 345565
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhcceeeeeec
Q 016667 85 LFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS 117 (385)
Q Consensus 85 ~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~ 117 (385)
...++|+....+.+.+..+++.....+.+-.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~ 106 (296)
T PRK15430 74 FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGY 106 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 666688888888999999999988877765554
No 16
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=74.28 E-value=6.3 Score=37.80 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=57.9
Q ss_pred chhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHH
Q 016667 6 SKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVL 85 (385)
Q Consensus 6 s~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~ 85 (385)
|+..++.+|+++++||++=....|++-..--.++...+.|.++.++..++. .. ..+. ++. .+| .
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~-~~------~~~~----~~~--~~~---~ 72 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIF-KP------WRLR----FAK--EQR---L 72 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-hH------Hhcc----CCH--HHH---H
Confidence 567899999999999999999999876655555777888888765543322 10 0011 111 222 2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhcceeee
Q 016667 86 FAMAGGVVLSIGNLATQYAWAFVGLSVTE 114 (385)
Q Consensus 86 ~AmaGGvvfnlgNl~lq~aia~aGLSVa~ 114 (385)
..+..|+...+.|.+..++....+.+++-
T Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~ 101 (293)
T PRK10532 73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAV 101 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 23334445566677777777766666543
No 17
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=74.07 E-value=14 Score=37.27 Aligned_cols=74 Identities=27% Similarity=0.356 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHhhcceeeeeec---cceeeeeeeeeeeecccCCCceeeEc--chhHHHHHHHHHh
Q 016667 82 PSVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVIS---SSITVVIGSTFNYFLDDKINKAEILF--PGIACFLVAVGLG 156 (385)
Q Consensus 82 ~sv~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~---~glavViGt~lNYfld~r~n~a~iLF--pGV~cfliAI~L~ 156 (385)
.+.+.-+.-|+.+.+||+.+.+|-+.+|++.+|-++ +-++.+-|. ||+..|-.|-|+.+ .|+.|++++.++=
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGI---l~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGI---LFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceE---EEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 366777888999999999999999999999999765 334443343 45555444667765 5777777777665
Q ss_pred hh
Q 016667 157 SA 158 (385)
Q Consensus 157 a~ 158 (385)
+.
T Consensus 284 g~ 285 (288)
T COG4975 284 GI 285 (288)
T ss_pred he
Confidence 44
No 18
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=65.30 E-value=3.8 Score=38.08 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAMA 89 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Ama 89 (385)
++.+++++.++||+-+...|+++.-... |...+.+.++.++.-++..+. ++ .+...+.+++. ...+-.....+
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~~~~~~~~-~i~~~R~~~a~~~l~~~~~~~-~~----~~~~~~~~~~~-~~~~~~~~~~~ 75 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKLLKPLPAT-DILGHRMIWSFPFMLLSVTLF-RQ----WAALIERLKRI-QKRPLILSLLL 75 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHHHHHHH-cc----hHHHHHHHhCc-ccchHHHHHHH
Confidence 5789999999999999999986432222 677777777654433222232 21 11112222211 11122344566
Q ss_pred HHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeee-ecccCCCceeeEcchhHH
Q 016667 90 GGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNY-FLDDKINKAEILFPGIAC 148 (385)
Q Consensus 90 GGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNY-fld~r~n~a~iLFpGV~c 148 (385)
.|+...+.+.+..++......+.+..+... +=+.-+.+.+ ++..|.++-.++-..++.
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~-~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~ 134 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLI-NPLVMVALGRVFLKERISRFQFIAVIIAT 134 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 677777888888888887666655554322 2122223322 345688776655444443
No 19
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=63.49 E-value=1.4e+02 Score=28.56 Aligned_cols=49 Identities=6% Similarity=0.089 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAF 58 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~Al 58 (385)
-+++.++..++|||=....|.+.......+...+.+.++-++.-.++..
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~ 57 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLL 57 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788899999999999976655554567778888876655444433
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=58.99 E-value=17 Score=34.46 Aligned_cols=70 Identities=10% Similarity=0.202 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHH
Q 016667 83 SVLFAMAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGL 155 (385)
Q Consensus 83 sv~~AmaGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L 155 (385)
.......+++.--+++++..+++...|.+.+-+.. -+..|+++.+-|+ ++.+.+ ..-+.|.+++++++.+
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~-~l~pv~a~l~g~~~lgE~~~--~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALR-NTSIVFAVVLGIWFLNERWY--LTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeec-ccHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhHHh
Confidence 34556677777778999999999999988877775 3456778888865 455553 3566788888887764
No 21
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=49.84 E-value=68 Score=33.30 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHHHHHHhcCcCCCCCcCcHHH
Q 016667 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALILNIRFLFSPILDTHRSSFKA 314 (385)
Q Consensus 235 ~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~lm~~Pv~G~p~ss~~~ 314 (385)
+.+.|+++-.++|+|-+.||=-++.--+=.|++ -...+++-..++.+.+=-++ -.| ++.+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs------------~Wlv~gi~swli~P~~~a~l------~ip--~~~~ 63 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKGWSWES------------YWLVQGIFSWLIVPWLWALL------AIP--DFFS 63 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCCccHHH------------HHHHHHHHHHHHHHHHHHHH------hCC--cHHH
Confidence 468999999999999999998888776556772 23334444444444433333 224 6788
Q ss_pred HhhcCC--CchHHHHHHHHHhhchhhhhccc----cchhhhHHHHHH
Q 016667 315 YLNDWN--GRGWALLAGLLCGFGNGLQFMGG----QAAGYAAADAVQ 355 (385)
Q Consensus 315 Y~~d~~--gr~~a~LaG~iwg~Gn~lqfmgg----qaAGyAaAdavq 355 (385)
|++... .-.+..+-|++||+|.-..=++= -+.|++++=.+-
T Consensus 64 i~~~~~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~ 110 (344)
T PF06379_consen 64 IYSATPASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLC 110 (344)
T ss_pred HHHhCChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHH
Confidence 888554 66777899999999965443332 445555554443
No 22
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=44.93 E-value=2.3e+02 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHH
Q 016667 11 IVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMT 48 (385)
Q Consensus 11 I~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig 48 (385)
..+.+++.++||+.....|++-..--..+...+.+.++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a 43 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLV 43 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35678899999999999998655433324666666654
No 23
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=43.22 E-value=8.7 Score=34.36 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=23.9
Q ss_pred eeeeecccCCCceeeEcchhHHHHHHHHHhhhhc
Q 016667 127 TFNYFLDDKINKAEILFPGIACFLVAVGLGSAVH 160 (385)
Q Consensus 127 ~lNYfld~r~n~a~iLFpGV~cfliAI~L~a~ah 160 (385)
+++|+.+++-+ |.||++.+++|.+.|++..
T Consensus 82 ~~~~L~~~~~~----llP~~~~I~vaglaGsIla 111 (158)
T PF09769_consen 82 TIASLHPPPEE----LLPGLGYIGVAGLAGSILA 111 (158)
T ss_pred HHHhhcCCCcc----cCcceeeeehhhhheeeee
Confidence 45666655542 9999999999999999877
No 24
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.33 E-value=22 Score=31.77 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=45.8
Q ss_pred CccccchhhhHHHHHHHH-HHHHHHHHHhcCcCCCCCcCcHHHHhhcCC---CchHHHHHHHHHhhchhhhhc
Q 016667 273 PHLIVYTAFFYFSVSGFV-IALILNIRFLFSPILDTHRSSFKAYLNDWN---GRGWALLAGLLCGFGNGLQFM 341 (385)
Q Consensus 273 ~~LtpYTA~F~FSv~~fv-~~~ilN~~lm~~Pv~G~p~ss~~~Y~~d~~---gr~~a~LaG~iwg~Gn~lqfm 341 (385)
.++-|+|.|+.-|..||. ++.=+--|+++||..| | ..++|-++.. ..-+-.+..+.+++|-++.+.
T Consensus 23 LPlLPTTPFlLLaa~cFaRsSpRf~~WLl~~~~fg-~--~v~~~~e~~ai~~~aK~~ai~~i~~~~~~s~~~v 92 (119)
T COG2832 23 LPLLPTTPFLLLAAACFARSSPRFHAWLLRHKYFG-P--YVRDWREGGAIPRKAKIKAILLITLSIGISFYFV 92 (119)
T ss_pred CcccCCcHHHHHHHHHHHcCCcHHHHHHHcCchhh-H--HHHHHHHcCCCChhhHHHHHHHHHHHHHHHhhcc
Confidence 345699999999999998 7788999999999988 2 2333333221 233445667777777666543
No 25
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=38.17 E-value=3.7e+02 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=29.2
Q ss_pred eeeeeeecccCCCceeeEcchhHHHHHHHHHhhhhc
Q 016667 125 GSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVH 160 (385)
Q Consensus 125 Gt~lNYfld~r~n~a~iLFpGV~cfliAI~L~a~ah 160 (385)
...+.|+. +|.+|+.++-.|..++.++-++-++.|
T Consensus 85 ~i~v~~~~-~r~~r~~~i~~g~ll~~lg~ll~alph 119 (633)
T TIGR00805 85 IIFVSYFG-TKLHRPIVIGIGCAIMGLGSFLLSLPH 119 (633)
T ss_pred HHHHHHhh-cccCcceEEEecHHHHHHHHHHHhChH
Confidence 45667888 556699999999999999999999887
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=37.33 E-value=1.6e+02 Score=28.20 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHHhh
Q 016667 93 VLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGS 157 (385)
Q Consensus 93 vfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L~a 157 (385)
...+.|.+..+++.-.|-+.+-+. .-+--|+++++.++ .+++. . ..-..|.++++.++.+..
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~l-t-~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKI-S-PQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCC-c-hhHHHHHHHHHHHHHHHH
Confidence 455666555566666665554444 22333445555544 44444 2 334557777777776654
No 27
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=36.74 E-value=3.2e+02 Score=24.69 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHH
Q 016667 8 AGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFA 87 (385)
Q Consensus 8 ~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~A 87 (385)
.....++++.-+.||.+....|..... +. ...=....-++.+.++.+.....+. .+..+ ...+.....
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~ 73 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LD---PFLFAAALRFLIAALLLLPLLLLEP------RGLRP--ALRPWLLLL 73 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cC---ChHHHHHHHHHHHHHHHHHHHHhhc------ccccc--cccchHHHH
Confidence 345566677779999999988876553 11 1111112122222222221222211 00111 222245667
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeeec-ccCCCceeeEcchhHHHHHHHHHh
Q 016667 88 MAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYFL-DDKINKAEILFPGIACFLVAVGLG 156 (385)
Q Consensus 88 maGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYfl-d~r~n~a~iLFpGV~cfliAI~L~ 156 (385)
+.+++.+.+++.+..+++...+.+.+.++....-+.....-.++. .+|.++.+++ |+.+.++.+++-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~Gv~lv 141 (292)
T COG0697 74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL--GILLALAGVLLI 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHH--HHHHHHHhHHhe
Confidence 777888888888999999988888887776544333222222343 5666453433 244444444444
No 28
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=36.22 E-value=33 Score=31.11 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCCCCccccc-hhhhHHHHHHHHHHHHHHHHHhcCcCC
Q 016667 269 KKGVPHLIVY-TAFFYFSVSGFVIALILNIRFLFSPIL 305 (385)
Q Consensus 269 ~~gv~~LtpY-TA~F~FSv~~fv~~~ilN~~lm~~Pv~ 305 (385)
.+|.|++.++ +-+||..+.+++.-+++|.++ |+|+.
T Consensus 6 ~~~~~~l~~~~~~~~~~~i~Flil~~iL~~~~-~kpi~ 42 (173)
T PRK13460 6 AKGLSLLDVNPGLVVWTLVTFLVVVLVLKKFA-WDVIL 42 (173)
T ss_pred cCCCCccCCcHhHHHHHHHHHHHHHHHHHHHh-HHHHH
Confidence 4677888888 477888888888888888776 67753
No 29
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.20 E-value=1.2e+02 Score=36.79 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=48.7
Q ss_pred cccCCCCCccccchhhhHHHHHHHHHHHHHHHH---HhcCcCCCCCcCcHHHHhhcCCCchHHHHHHHHHhhchh-----
Q 016667 266 HALKKGVPHLIVYTAFFYFSVSGFVIALILNIR---FLFSPILDTHRSSFKAYLNDWNGRGWALLAGLLCGFGNG----- 337 (385)
Q Consensus 266 ~~l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~---lm~~Pv~G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~----- 337 (385)
|++...+|...-.+.++.|.++.|++-+++-.+ ++++. .+.....|+.- .-|.+|++..++...|..
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFGl~AYLLP~LL~~~a~~l~R~r----~~~~~l~~~~l-~lRliGlLLLLLas~gLaa~~~~ 135 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQ----SSDEYIDYFAV-SLRIIGVLALILTSCGLAAINAD 135 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc----ccchhhhhHHH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 333444566666677888888888765444222 23332 11111123211 134555555433322221
Q ss_pred --hhhccccchhhhHHHHHHHHHhh
Q 016667 338 --LQFMGGQAAGYAAADAVQVSFNA 360 (385)
Q Consensus 338 --lqfmggqaAGyAaAdavqa~~~~ 360 (385)
..+.+|+..|+..+..++.+++.
T Consensus 136 d~~~~~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 136 DIWYFASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred ccccccccchHHHHHHHHHHHHHhH
Confidence 12358999999999999887764
No 30
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=34.91 E-value=31 Score=37.20 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCC---cchHhhhhhcccCchhH--HHHHHHHHHHhhHHHH
Q 016667 45 YTMTNLLAAIIIAFTLGEFGDAR---PNFVYQLTELKDNWPSV--LFAMAGGVVLSIGNLA 100 (385)
Q Consensus 45 Y~ig~lL~all~AlTlGsiG~~~---~nFl~qL~Q~~~~~~sv--~~AmaGGvvfnlgNl~ 100 (385)
-+.|+..+++.+|..+|.+|+++ .+|+.-|......|-++ |++=.|=..+=.|+|+
T Consensus 192 NvLGlVvF~~~fGivig~lG~~g~~lv~FF~~L~e~iMklV~~iMWy~PvGI~fLIagkIl 252 (507)
T KOG3787|consen 192 NVLGLVVFCIVFGIVIGKLGEKGQVLVDFFNSLNEAIMKLVSWIMWYSPVGILFLIAGKIL 252 (507)
T ss_pred cchhHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHhhh
Confidence 46899999999999999999999 89999999855665443 4454555555555554
No 31
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=31.40 E-value=1.8e+02 Score=28.01 Aligned_cols=102 Identities=11% Similarity=0.002 Sum_probs=57.9
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHH-HHHHHHHHHHhcCcCCCCCcCcHH
Q 016667 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGF-VIALILNIRFLFSPILDTHRSSFK 313 (385)
Q Consensus 235 ~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~f-v~~~ilN~~lm~~Pv~G~p~ss~~ 313 (385)
++.||++..+.+.+++|.-+.+.-.. ++ +.|....++=.+... +..++ +..+++ . ...+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~--~~----------~~~~~~~~~R~~~a~~~l~~~---~~~~~~----~-~~~~ 64 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI--YY----------VPADEILTHRVIWSFFFMVVL---MSICRQ----W-SYLK 64 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh--cC----------CCHHHHHHHHHHHHHHHHHHH---HHHHcc----H-HHHH
Confidence 46799999999999999988777433 22 223344443322222 12111 122322 1 1122
Q ss_pred HHhhcCCCchHHHHHHHHHhhchhhhhccccchhhhHHHHHHH
Q 016667 314 AYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQV 356 (385)
Q Consensus 314 ~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyAaAdavqa 356 (385)
.-+++++...+.+++++.-++.+.+.+.|=+..+.+.|-.++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~ 107 (296)
T PRK15430 65 TLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYF 107 (296)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 2223333333445777777778899998888877777766653
No 32
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=31.40 E-value=1.2e+02 Score=31.46 Aligned_cols=94 Identities=18% Similarity=0.330 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhcChHHHH-HhhhcCCCCCeeeehhHHH--HHHHHHHHHHHhhccCCCCC-cchHhhhhhcccCchh
Q 016667 8 AGAIVCMLFSLFFLGTWPAIM-TLLERRGRPPQHTYLDYTM--TNLLAAIIIAFTLGEFGDAR-PNFVYQLTELKDNWPS 83 (385)
Q Consensus 8 ~~AI~~m~~sllcwGTWpn~~-kL~er~gR~pqh~Y~DY~i--g~lL~all~AlTlGsiG~~~-~nFl~qL~Q~~~~~~s 83 (385)
..++.+|++.|++=|.=-.-. |-.+.||| -.||+.+ |=++.+++++..+|++=++. -++-++-.- .+|..
T Consensus 89 Yip~~~~L~~Li~R~v~fefR~k~~~~~~k----~~wd~~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g--~~~~~ 162 (346)
T COG1294 89 YLPMILVLFGLIFRGVAFEFRSKIEDPRWK----KFWDWAFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAG--LSFDQ 162 (346)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccChhhH----hHHHHHHHhhhHHHHHHHHHHHHHHhcCceeccCCCccc--ccHHH
Confidence 456777778777765433222 12233344 4899865 45888888888888663333 122222111 25555
Q ss_pred HH--HHHHHHHHHhhHHHHHHHHHHh
Q 016667 84 VL--FAMAGGVVLSIGNLATQYAWAF 107 (385)
Q Consensus 84 v~--~AmaGGvvfnlgNl~lq~aia~ 107 (385)
+. ++.++|+.+-+.-.+.-++|-.
T Consensus 163 l~~pf~~l~gl~~~~~~~l~Ga~~l~ 188 (346)
T COG1294 163 LLNPFALLCGLGLVLMYVLHGAAWLL 188 (346)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 7788888777766555555543
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=30.78 E-value=91 Score=31.73 Aligned_cols=137 Identities=8% Similarity=0.059 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHH-HHHHHHHHHHHHhhccCCCCCcchHhhhhhcccCchhHHHHH
Q 016667 10 AIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYT-MTNLLAAIIIAFTLGEFGDARPNFVYQLTELKDNWPSVLFAM 88 (385)
Q Consensus 10 AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~-ig~lL~all~AlTlGsiG~~~~nFl~qL~Q~~~~~~sv~~Am 88 (385)
.+++++.+.+||+-|-..+|-..+ |+|.++ .++ +..+..++.+.. +.-.-+ +.+.-+...+ .++.-+....
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~--~~~~~~--~~t~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~--~~~~~~~i~y 261 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMS--EYPAAF--TVSFLYTVCVSIVTSM-IGLVVE-KNNPSVWIIH--FDITLITIVT 261 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCcHh--HHHHHHHHHHHHHHHH-HHHHHc-cCCcccceec--cchHHHHHHH
Confidence 567899999999999998886655 445542 111 111111221111 111100 0011111111 2222222222
Q ss_pred HHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHHhhh
Q 016667 89 AGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGSA 158 (385)
Q Consensus 89 aGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L~a~ 158 (385)
.|++-.++-.+-.+++.-.|-+.+-...- +.=|+++++-++ +..+. . ..-..|.++++.++.+...
T Consensus 262 -~~i~t~lay~lw~~~v~~~ga~~as~~~~-L~PV~a~llg~l~LgE~l-t-~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 262 -MAIITSVYYVIHSWTVRHKGPLYLAIFKP-LSILIAVVMGAIFLNDSL-Y-LGCLIGGILITLGFYAVMW 328 (358)
T ss_pred -HHHHHHHHHHHHHHHHhccCchHHHHHHh-HHHHHHHHHHHHHhCCCC-c-HHHHHHHHHHHHHHHHHHh
Confidence 33333445455556676777665542221 111223333333 44444 2 2334677888888887653
No 34
>PRK11689 aromatic amino acid exporter; Provisional
Probab=30.55 E-value=1.1e+02 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHH
Q 016667 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLA 52 (385)
Q Consensus 9 ~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~ 52 (385)
-++.+.+++.++||+.-...|.+-+.-.......+.|.++-++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l 47 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLL 47 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 45778999999999998888887665544456667777665443
No 35
>PRK11056 hypothetical protein; Provisional
Probab=29.60 E-value=89 Score=28.11 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHh
Q 016667 236 ILIGLAITFFAGVCF 250 (385)
Q Consensus 236 ~~~Gl~ia~~aG~~~ 250 (385)
.++-+++++++|+|.
T Consensus 8 ek~tLlLaliaGl~~ 22 (120)
T PRK11056 8 EKGTLLLALIAGLSI 22 (120)
T ss_pred chhhHHHHHHHHHhh
Confidence 467799999999996
No 36
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=29.54 E-value=1e+02 Score=30.93 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=61.2
Q ss_pred CcccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHH-----H-HHHHhcCcCCC
Q 016667 233 GKSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALI-----L-NIRFLFSPILD 306 (385)
Q Consensus 233 ~~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~i-----l-N~~lm~~Pv~G 306 (385)
.+++.+=++.++.||+.+|+=+=+.-...++. ++.++.++.-..-+.|++|..++-+. - |+.++--+...
T Consensus 24 ~~~~~~~~l~ai~AG~~i~lg~~~~~~~~~~~----~~~~~~~~~lvg~~~F~~GLilVv~~g~ELfT~n~m~~t~~~~~ 99 (265)
T COG2116 24 TKSPLKLLLLAILAGAFIGLGFLFYITVGTGL----PGAPGGLAKLVGGLVFSLGLILVVIAGSELFTSNTMLLTVGVLS 99 (265)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHhhcccC----CCCCcchHHHHHHHHHHHHHHHhhhhCccccccchhHHHHHHHh
Confidence 45677888999999999998776666555433 45667778888889999998877653 2 67777777766
Q ss_pred CCcCcHHHHhhcCC
Q 016667 307 THRSSFKAYLNDWN 320 (385)
Q Consensus 307 ~p~ss~~~Y~~d~~ 320 (385)
++ .|+++-++-|-
T Consensus 100 k~-Is~~~ll~~w~ 112 (265)
T COG2116 100 KK-ISWGQLLRNWL 112 (265)
T ss_pred CC-ccHHHHHHHHH
Confidence 55 78888776553
No 37
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=25.43 E-value=2e+02 Score=30.08 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=14.5
Q ss_pred CceeeEcchhHHHHHHHHHhhhh
Q 016667 137 NKAEILFPGIACFLVAVGLGSAV 159 (385)
Q Consensus 137 n~a~iLFpGV~cfliAI~L~a~a 159 (385)
.+..+++-+++++++-+|+-...
T Consensus 171 ~~~a~~YF~~a~~v~l~~i~~~~ 193 (437)
T TIGR00939 171 KKSALGYFGTPCVVQLICIVCYL 193 (437)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Confidence 34566777777776666666543
No 38
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=25.38 E-value=48 Score=30.53 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCCCCccccc---hhhhHHHHHHHHHHHHHHHHHhcCcCCC
Q 016667 269 KKGVPHLIVY---TAFFYFSVSGFVIALILNIRFLFSPILD 306 (385)
Q Consensus 269 ~~gv~~LtpY---TA~F~FSv~~fv~~~ilN~~lm~~Pv~G 306 (385)
.+|.|.+..- +-+|||.+.+++..+++|.++ |.|+.+
T Consensus 19 ~~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l-~~PI~~ 58 (181)
T PRK13454 19 APGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVA-LPRIGA 58 (181)
T ss_pred CCCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5777877774 388999999999999998877 447643
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=24.72 E-value=51 Score=27.27 Aligned_cols=82 Identities=13% Similarity=0.280 Sum_probs=48.7
Q ss_pred cchHhhhhhcccCchhHHHHHHHHHHHh-hHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcch
Q 016667 68 PNFVYQLTELKDNWPSVLFAMAGGVVLS-IGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPG 145 (385)
Q Consensus 68 ~nFl~qL~Q~~~~~~sv~~AmaGGvvfn-lgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpG 145 (385)
+++...+++ .+|. ...+.|++.. +++++..+|..+.+ +.+. +..++..++++.+-.+ ...|.++. -..|
T Consensus 23 ~~~~~~~~~--~~~~---~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~-~i~~~~pi~~~ll~~~~~~er~~~~--~~~a 93 (113)
T PF13536_consen 23 RDLFRALRR--KPWL---WLILAGLLGFGVAYLLFFYALSYAP-ALVA-AIFSLSPIFTALLSWLFFKERLSPR--RWLA 93 (113)
T ss_pred HHHHHHHHh--CcHH---HHHHHHHHHHHHHHHHHHHHHHhCc-HHHH-HHHHHHHHHHHHHHHHHhcCCCCHH--HHHH
Confidence 467777777 5554 3444445444 77889999999998 5333 4455566666654443 44566443 3336
Q ss_pred hHHHHHHHHHhhh
Q 016667 146 IACFLVAVGLGSA 158 (385)
Q Consensus 146 V~cfliAI~L~a~ 158 (385)
++..++.|++=+.
T Consensus 94 ~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 94 ILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666665433
No 40
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.39 E-value=2.6e+02 Score=30.90 Aligned_cols=160 Identities=21% Similarity=0.212 Sum_probs=88.3
Q ss_pred eeeeeeeecccCCCceeeEcchhHHHHHHHHHhhhhcccchhchHHhhcCCCCCCCCCCCccccCCcCCCCCCCCCCCCC
Q 016667 124 IGSTFNYFLDDKINKAEILFPGIACFLVAVGLGSAVHSSNAADNKAKLNNLPSDSKPGTRATFIPTSCETLPENGIKDPE 203 (385)
Q Consensus 124 iGt~lNYfld~r~n~a~iLFpGV~cfliAI~L~a~ah~sNaad~~~Kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~e 203 (385)
+|-..++|. |.+++..|..+.+|..+..+-+|++|.----.-+...
T Consensus 98 ~G~LSDlfG-----Rr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gv----------------------------- 143 (599)
T PF06609_consen 98 VGRLSDLFG-----RRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGV----------------------------- 143 (599)
T ss_pred hHHHHHHhc-----chHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHH-----------------------------
Confidence 455555554 7789999999999999999999987663311122110
Q ss_pred CCCCccccccccccchhh-hhhccccccccCcccchhHHHHHHHHHHhhhhhhhhhhhcc--ccccccCCCCCccccchh
Q 016667 204 VGNDTVGKLKAGTAGFLV-EIENRRSIKVFGKSILIGLAITFFAGVCFSLFSPAFNLATN--DQWHALKKGVPHLIVYTA 280 (385)
Q Consensus 204 ~~~~~~~~~~~gta~~l~-~le~~rsikv~~~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atn--d~~~~l~~gv~~LtpYTA 280 (385)
.+|..+... -+.|-.+ -|.+..|+.+..+.-+.....+|.+....+ .+|+-
T Consensus 144 ---------gaG~~~~~~~~isEl~p----~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw------------- 197 (599)
T PF06609_consen 144 ---------GAGVQELAALAISELVP----NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW------------- 197 (599)
T ss_pred ---------hhHHHHHHHHHHHHhcc----cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch-------------
Confidence 011111000 0111111 122345666666666666777888876544 57872
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCcCC----CCCcCcHHHHhhcCCCchHHHHHHHHHhhchhhhhccccchhhh
Q 016667 281 FFYFSVSGFVIALILNIRFLFSPIL----DTHRSSFKAYLNDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYA 349 (385)
Q Consensus 281 ~F~FSv~~fv~~~ilN~~lm~~Pv~----G~p~ss~~~Y~~d~~gr~~a~LaG~iwg~Gn~lqfmggqaAGyA 349 (385)
.||+.+.....++++= ++.|||-. -.++.+.+++++. .-+.|+++...|.++-.++=+-+|+.
T Consensus 198 ~~~~~~i~~~i~~vl~-~~fY~PP~~~~~~~~~~s~~~~l~~-----lD~IG~~L~~~Gl~LfLlgl~wgG~~ 264 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLI-FFFYFPPPRAQLHGRKLSKREQLKE-----LDWIGIFLFIAGLALFLLGLSWGGYP 264 (599)
T ss_pred HHHHHHHHHHHHHHHH-HHHhCCCchhhhccccCcHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 2333333333444333 34477742 1123566677651 33577777777777777766666653
No 41
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=23.53 E-value=2e+02 Score=27.66 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHhhhcC
Q 016667 9 GAIVCMLFSLFFLGTWPAIMTLLERR 34 (385)
Q Consensus 9 ~AI~~m~~sllcwGTWpn~~kL~er~ 34 (385)
..+.+++++-+||+-.-..+|-..++
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~ 168 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSH 168 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999988888765443
No 42
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=22.28 E-value=2.3e+02 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.6
Q ss_pred hhccccccccCcccchhHHHHHH
Q 016667 223 IENRRSIKVFGKSILIGLAITFF 245 (385)
Q Consensus 223 le~~rsikv~~~~~~~Gl~ia~~ 245 (385)
+||+|+.++.+|+..+.+-+..+
T Consensus 52 ~eDER~~~I~ekAs~~Tl~V~~i 74 (111)
T PF09946_consen 52 VEDERTERISEKASRRTLQVFII 74 (111)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999887777765544
No 43
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=22.16 E-value=3e+02 Score=29.38 Aligned_cols=63 Identities=29% Similarity=0.538 Sum_probs=36.3
Q ss_pred hhhccccccc-----------cCccc-------chhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhH
Q 016667 222 EIENRRSIKV-----------FGKSI-------LIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFY 283 (385)
Q Consensus 222 ~le~~rsikv-----------~~~~~-------~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~ 283 (385)
+.+++|.||. .|+.. ...-.++++.|+|.-+ .-+|+ |++--|.-|--.-...+||
T Consensus 313 ~~~e~r~ikLGlGDFIFYSvLvGkAa~~~d~~TviAC~vaIL~GL~~TL----~llsv---~~kALPALPisI~~G~iFY 385 (406)
T KOG2736|consen 313 EDNEERGIKLGLGDFIFYSVLVGKAAAYGDLNTVIACFVAILIGLCLTL----LLLSV---FKKALPALPISITFGLIFY 385 (406)
T ss_pred ccccccceeeccCceEEEEeeccchhhcCChHHHHHHHHHHHHHHHHHH----HHHHH---HhhcCcCCchHHHHHHHHH
Confidence 5567999982 24333 3334455555555544 33333 2222466676677888999
Q ss_pred HHHHHHHH
Q 016667 284 FSVSGFVI 291 (385)
Q Consensus 284 FSv~~fv~ 291 (385)
||.-.++-
T Consensus 386 F~t~~l~e 393 (406)
T KOG2736|consen 386 FSTRLLVE 393 (406)
T ss_pred HHHHHHHH
Confidence 99876653
Done!