Query 016667
Match_columns 385
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 41.0 3.5 0.00012 35.4 -1.4 69 88-158 34-103 (137)
2 3kcu_A Probable formate transp 25.6 2E+02 0.0068 27.3 7.8 81 234-320 29-115 (285)
3 3b5d_A Multidrug transporter E 14.7 33 0.0011 27.7 -0.2 68 88-157 34-102 (110)
4 3j00_Z Cell division protein F 11.4 1.4E+02 0.0047 24.3 2.6 30 8-38 6-35 (98)
5 1bnx_A Protein (BAND 3); human 8.5 2.2E+02 0.0075 19.3 2.3 18 46-63 13-30 (34)
6 2kr6_A Presenilin-1; protease, 7.6 1.3E+02 0.0044 27.4 1.1 45 240-287 115-159 (176)
7 3kly_A Putative formate transp 7.0 4.8E+02 0.017 24.6 4.8 80 235-320 29-114 (280)
8 4f4l_A ION transport protein; 6.8 2.2E+02 0.0074 23.0 2.0 44 256-299 46-90 (112)
9 4fc4_A Nitrite transporter NIR 6.8 2E+02 0.0069 27.0 2.0 79 234-320 22-106 (261)
10 2wjn_L Reaction center protein 6.3 1.2E+03 0.04 22.5 7.1 65 9-76 89-163 (274)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=40.95 E-value=3.5 Score=35.41 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=44.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHHhhh
Q 016667 88 MAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGSA 158 (385)
Q Consensus 88 maGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L~a~ 158 (385)
++|.+...++-+++.+++...++|++.|+-.++.-|+.+++-++ ++.+.+. .=..|++++++.|++-..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--PAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHhc
Confidence 45666677788899999999999999999667777777777644 4555533 336788888888887654
No 2
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=25.60 E-value=2e+02 Score=27.32 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=49.3
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHH------HHHHhcCcCCCC
Q 016667 234 KSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALIL------NIRFLFSPILDT 307 (385)
Q Consensus 234 ~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~il------N~~lm~~Pv~G~ 307 (385)
.+..+=++.++.||+.+++=.=+....+.+- ++..|.++.--.-+.|++|..++-+.= |+...--+..+
T Consensus 29 ~~~~~~~~~~ilAG~~I~~g~~~~~~v~~~~----~~~~~g~~~ll~g~~F~vGL~lVvl~G~ELFTgn~l~~~a~~~~- 103 (285)
T 3kcu_A 29 KHPLKTFYLAITAGVFISIAFVFYITATTGT----GTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKASG- 103 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----TSSCHHHHHHHHHHHHTHHHHHHHHHTCCCTTTTHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccHHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHcC-
Confidence 3567778889999998887544333333211 112344566667788999987765432 54432223333
Q ss_pred CcCcHHHHhhcCC
Q 016667 308 HRSSFKAYLNDWN 320 (385)
Q Consensus 308 p~ss~~~Y~~d~~ 320 (385)
|.|+++.++-|-
T Consensus 104 -~is~~~~lr~W~ 115 (285)
T 3kcu_A 104 -RITWGQLAKNWL 115 (285)
T ss_dssp -CCCHHHHTTTHH
T ss_pred -CCCHHHHHHHHH
Confidence 578999988765
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=14.73 E-value=33 Score=27.72 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhhcceeeeeeccceeeeeeeeeeee-cccCCCceeeEcchhHHHHHHHHHhh
Q 016667 88 MAGGVVLSIGNLATQYAWAFVGLSVTEVISSSITVVIGSTFNYF-LDDKINKAEILFPGIACFLVAVGLGS 157 (385)
Q Consensus 88 maGGvvfnlgNl~lq~aia~aGLSVa~pi~~glavViGt~lNYf-ld~r~n~a~iLFpGV~cfliAI~L~a 157 (385)
.++.+..-++-.++.++.....+|++.|+-.|+..|+-+.+-++ .+++.+... ..|++++++.|++-.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~--~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA--IIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH--HHHHHHHHHHHHHHh
Confidence 34555566777889999999999999999666666666666654 455665544 457777777777653
No 4
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=11.36 E-value=1.4e+02 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHhhcChHHHHHhhhcCCCCC
Q 016667 8 AGAIVCMLFSLFFLGTWPAIMTLLERRGRPP 38 (385)
Q Consensus 8 ~~AI~~m~~sllcwGTWpn~~kL~er~gR~p 38 (385)
|+.-+++++..++||.|.... +++++.++|
T Consensus 6 G~~F~l~Vl~~l~~~~~~~~~-Wl~~~~~~P 35 (98)
T 3j00_Z 6 GILFLLTVLTTVLVSGWVVLG-WMEDAQRLP 35 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCCCCCCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHhcCCCCC
Confidence 344556777788899886544 344444554
No 5
>1bnx_A Protein (BAND 3); human erythrocyte anion transporter, transmembrane, synthetic peptide, electron transport; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.50 E-value=2.2e+02 Score=19.35 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhccC
Q 016667 46 TMTNLLAAIIIAFTLGEF 63 (385)
Q Consensus 46 ~ig~lL~all~AlTlGsi 63 (385)
++-++.++++-++|||..
T Consensus 13 ~~fiyFa~l~PaIaFg~l 30 (34)
T 1bnx_A 13 VIFIYFAALSPAITFGGL 30 (34)
T ss_dssp HHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677788999999999965
No 6
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=7.61 E-value=1.3e+02 Score=27.40 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHH
Q 016667 240 LAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVS 287 (385)
Q Consensus 240 l~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~ 287 (385)
-.++.+.+++.|++--++-++. ++.--|..|--.--...|||+.-
T Consensus 115 t~~ac~vaIL~GL~~TL~lLa~---~~~aLPALPiSI~lG~~fyf~t~ 159 (176)
T 2kr6_A 115 TTIACFVAILIGLCLTLLLLAI---FKKALPALPISITFGLVFYFATD 159 (176)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH---HTCSCSSSSSCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hcccCCCCcHHHHHHHHHHHHHH
Confidence 4455555666666555555554 22224555555556666777644
No 7
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=7.04 E-value=4.8e+02 Score=24.58 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=47.7
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHHH------HHHHhcCcCCCCC
Q 016667 235 SILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALIL------NIRFLFSPILDTH 308 (385)
Q Consensus 235 ~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~il------N~~lm~~Pv~G~p 308 (385)
+..+=++.++.||+.+++=.=+....+.+- ++..|.++.--.-+.|++|..++-+.= |+. +--.... .
T Consensus 29 ~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~----~~~~~g~~~ll~g~~F~vGL~lVvl~g~ELFTgn~l-~~~~~~~-~ 102 (280)
T 3kly_A 29 AAYKSFLLAISAGIQIGIAFVFYTVVTTGA----HDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVL-ILVAKAS-G 102 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTCC-CCSSSSS-S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccHHHHHHHHHHHHHHHHHHHccccccccchH-HHHHHHc-C
Confidence 456778889999998887444333333211 122344556667788999887775532 544 2222333 2
Q ss_pred cCcHHHHhhcCC
Q 016667 309 RSSFKAYLNDWN 320 (385)
Q Consensus 309 ~ss~~~Y~~d~~ 320 (385)
|.|+++.++-|-
T Consensus 103 ~is~~~~lr~W~ 114 (280)
T 3kly_A 103 KISWKELVRNWT 114 (280)
T ss_dssp SCCSSSHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 578888877654
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=6.79 E-value=2.2e+02 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=20.8
Q ss_pred hhhhhccccccc-cCCCCCccccchhhhHHHHHHHHHHHHHHHHH
Q 016667 256 AFNLATNDQWHA-LKKGVPHLIVYTAFFYFSVSGFVIALILNIRF 299 (385)
Q Consensus 256 ~~n~Atnd~~~~-l~~gv~~LtpYTA~F~FSv~~fv~~~ilN~~l 299 (385)
.|...|.|+|.. .-...-.-.|+...|+.+.-++..=+++|.++
T Consensus 46 LF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfi 90 (112)
T 4f4l_A 46 LFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFI 90 (112)
T ss_dssp HHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899962 11111122344444444443433445556543
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=6.78 E-value=2e+02 Score=26.97 Aligned_cols=79 Identities=13% Similarity=-0.079 Sum_probs=51.1
Q ss_pred cccchhHHHHHHHHHHhhhhhhhhhhhccccccccCCCCCccccchhhhHHHHHHHHHHHH------HHHHHhcCcCCCC
Q 016667 234 KSILIGLAITFFAGVCFSLFSPAFNLATNDQWHALKKGVPHLIVYTAFFYFSVSGFVIALI------LNIRFLFSPILDT 307 (385)
Q Consensus 234 ~~~~~Gl~ia~~aG~~~s~Fsp~~n~Atnd~~~~l~~gv~~LtpYTA~F~FSv~~fv~~~i------lN~~lm~~Pv~G~ 307 (385)
+++.+=++.++.||+.+++=.=+.....+ . ..|...+--.-+.|++|..++-+. =|+..+--|+...
T Consensus 22 ~~~~~~~~~~~~AG~~I~~g~~~~~~~~~-~------~~~~~~~ll~g~~F~vGl~lVvl~g~eLfTgn~l~~~~~~~~~ 94 (261)
T 4fc4_A 22 NNPLGFWVSSAMAGAYVGLGIILIFTLGN-L------LDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTLGVKAG 94 (261)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHT-T------SCGGGHHHHHHHHTTHHHHHHHHTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc-c------cCchHHHHHHHHHHHHHHHHHHHcCCcccccchHHHHHHHHcC
Confidence 34566788899999988874333222221 1 123455666778899988776543 2666665666553
Q ss_pred CcCcHHHHhhcCC
Q 016667 308 HRSSFKAYLNDWN 320 (385)
Q Consensus 308 p~ss~~~Y~~d~~ 320 (385)
|.|+++.++-|-
T Consensus 95 -~~s~~~~lr~W~ 106 (261)
T 4fc4_A 95 -TISHGQMWAILP 106 (261)
T ss_dssp -SSCHHHHHHHHH
T ss_pred -CCcHHHHHHHHH
Confidence 489999998775
No 10
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=6.35 E-value=1.2e+03 Score=22.49 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHH---HhhccCCCCC-------cchHhhhhh
Q 016667 9 GAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIA---FTLGEFGDAR-------PNFVYQLTE 76 (385)
Q Consensus 9 ~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~A---lTlGsiG~~~-------~nFl~qL~Q 76 (385)
.+.+|..++.+|| |....+++.|-+== .|.-|-|+..+.+.-.+.= +-.|+-++.- -++....+|
T Consensus 89 ~~~~~~~~~~~~w--~~R~~e~ar~LGmg-~hia~AFsaaI~~~~~l~lirPilmGsW~~g~P~GI~~hldw~~~f~~ 163 (274)
T 2wjn_L 89 AITVCALGAFISW--MLREVEISRKLGIG-WHVPLAFCVPIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVNNFGY 163 (274)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHTHHHHHHTCGGGSCCBCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHhhcccccccccCCccchhhcchhHHHHH
Confidence 4677888888887 66666665544432 5777888877765444332 4558887765 455666654
Done!