Query 016667
Match_columns 385
No_of_seqs 88 out of 90
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 17:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l7va_ f.22.1.1 (A:) ABC tran 12.9 40 0.0029 30.1 2.1 64 42-105 15-81 (324)
2 d1nw1a_ d.144.1.8 (A:) Choline 8.8 48 0.0035 29.1 1.0 33 12-48 347-379 (395)
3 d1q90m_ f.23.25.1 (M:) PetM su 8.6 42 0.003 21.3 0.4 22 95-116 5-26 (34)
4 d3cx5c1 f.32.1.1 (C:262-385) M 8.4 2.4E+02 0.018 21.6 5.2 60 4-65 24-83 (124)
5 d2d8xa2 g.39.1.3 (A:8-32) Pinc 6.7 43 0.0031 20.2 -0.3 10 257-266 12-21 (26)
6 d1sxjb1 a.80.1.1 (B:231-322) R 6.6 1.3E+02 0.0098 21.3 2.6 33 347-379 30-62 (92)
7 d2axti1 f.23.37.1 (I:1-35) Pho 6.0 1.1E+02 0.008 19.5 1.4 20 274-294 5-24 (35)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 5.9 1.5E+02 0.011 19.0 2.1 19 235-253 16-34 (37)
9 d2fh1a3 d.109.1.1 (A:629-741) 5.7 57 0.0041 24.4 -0.1 20 305-324 94-113 (113)
10 d1hkya_ g.10.1.3 (A:) Pan modu 4.5 41 0.003 24.9 -1.7 31 334-364 14-44 (86)
No 1
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=12.85 E-value=40 Score=30.12 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=43.8
Q ss_pred ehhHHHHHHHHHHHHHHhhccCCCCCcchHhhhhh---cccCchhHHHHHHHHHHHhhHHHHHHHHH
Q 016667 42 YLDYTMTNLLAAIIIAFTLGEFGDARPNFVYQLTE---LKDNWPSVLFAMAGGVVLSIGNLATQYAW 105 (385)
Q Consensus 42 Y~DY~ig~lL~all~AlTlGsiG~~~~nFl~qL~Q---~~~~~~sv~~AmaGGvvfnlgNl~lq~ai 105 (385)
++=-.+..++++.++++..|+..-+-.+.+++..| .+-..|-+..|++.|..+.++-.++|.-.
T Consensus 15 ~l~~l~~ll~~~~~~sl~~G~~~i~~~~~~~~~~~~ii~~iRlPR~l~a~l~Ga~La~sG~~lQ~~~ 81 (324)
T d1l7va_ 15 WLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALF 81 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHBSSSBCCSGGGSSTTTTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCCHHHhcCccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34344556667777888888876555444443322 11345788999999999999999999754
No 2
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=8.82 E-value=48 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHH
Q 016667 12 VCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMT 48 (385)
Q Consensus 12 ~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig 48 (385)
.+.+++-++||-|+-+|.-.+ .. ++=|++|+..
T Consensus 347 ~~~~~s~l~W~lW~~iq~~~~---~~-~fDy~~Y~~~ 379 (395)
T d1nw1a_ 347 PFVPVSHFFWGVWGLLQVELS---PV-GFGFADYGRD 379 (395)
T ss_dssp GGHHHHHHHHHHHHHHHHHHC---CS-SSCHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhhhhc---CC-CCCHHHHHHH
Confidence 467889999999999996432 22 6779999864
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.57 E-value=42 Score=21.27 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHhhcceeeeee
Q 016667 95 SIGNLATQYAWAFVGLSVTEVI 116 (385)
Q Consensus 95 nlgNl~lq~aia~aGLSVa~pi 116 (385)
-.|.-++..++.++|+++.|++
T Consensus 5 iagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhh
Confidence 3566677788888898888764
No 4
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.37 E-value=2.4e+02 Score=21.55 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=38.0
Q ss_pred ecchhHHHHHHHHHHHhhcChHHHHHhhhcCCCCCeeeehhHHHHHHHHHHHHHHhhccCCC
Q 016667 4 VESKAGAIVCMLFSLFFLGTWPAIMTLLERRGRPPQHTYLDYTMTNLLAAIIIAFTLGEFGD 65 (385)
Q Consensus 4 ves~~~AI~~m~~sllcwGTWpn~~kL~er~gR~pqh~Y~DY~ig~lL~all~AlTlGsiG~ 65 (385)
+.||.+.++.|+.|.+.+---|-.-+.-.|+.|+ . -+.......+.+..++=--+|+-..
T Consensus 24 iP~k~~Gvl~~~~si~il~~lP~l~~s~~~s~~~-r-p~~k~~fw~fv~~fi~LtwlG~~p~ 83 (124)
T d3cx5c1 24 IPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTF-K-VLSKFFFFIFVFNFVLLGQIGACHV 83 (124)
T ss_dssp SSSHHHHHHHHHHHHHGGGGHHHHCCCSSSSSTT-C-HHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHhhhhhhhcch-h-hHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5799999999999999998888766555555554 1 2334445555444443333454433
No 5
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.68 E-value=43 Score=20.22 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=8.1
Q ss_pred hhhhcccccc
Q 016667 257 FNLATNDQWH 266 (385)
Q Consensus 257 ~n~Atnd~~~ 266 (385)
+-.|||.+||
T Consensus 12 vikamn~~wh 21 (26)
T d2d8xa2 12 VIKAMNNSWH 21 (26)
T ss_dssp CEEETTEEEC
T ss_pred HHHHHhccCC
Confidence 3478999999
No 6
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.62 E-value=1.3e+02 Score=21.31 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHhhccccceecchhhHHHHHHH
Q 016667 347 GYAAADAVQVSFNACKKSTIMYSNVELFILMHV 379 (385)
Q Consensus 347 GyAaAdavqa~~~~~~~~~~~~~~~~~~~~~~~ 379 (385)
||+..|-+..+..+.....-+=.++..-+++++
T Consensus 30 Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~~l 62 (92)
T d1sxjb1 30 GYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEI 62 (92)
T ss_dssp TCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 999999999999988765333334545565554
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.98 E-value=1.1e+02 Score=19.54 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=10.6
Q ss_pred ccccchhhhHHHHHHHHHHHH
Q 016667 274 HLIVYTAFFYFSVSGFVIALI 294 (385)
Q Consensus 274 ~LtpYTA~F~FSv~~fv~~~i 294 (385)
+..+||...+| ++.|+.+++
T Consensus 5 Ki~Vy~vV~fF-v~lFiFGFL 24 (35)
T d2axti1 5 KITVYIVVTFF-VLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred EEehhhHHHHH-HHHHHHhhc
Confidence 34577765544 445554443
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.86 E-value=1.5e+02 Score=19.04 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHHHHhhhh
Q 016667 235 SILIGLAITFFAGVCFSLF 253 (385)
Q Consensus 235 ~~~~Gl~ia~~aG~~~s~F 253 (385)
+--+|+.+.++-|++||-.
T Consensus 16 sLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4578999999988888753
No 9
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.74 E-value=57 Score=24.41 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=16.3
Q ss_pred CCCCcCcHHHHhhcCCCchH
Q 016667 305 LDTHRSSFKAYLNDWNGRGW 324 (385)
Q Consensus 305 ~G~p~ss~~~Y~~d~~gr~~ 324 (385)
.|..+..|+.||.+|+.+.|
T Consensus 94 eG~Ep~~F~~~F~~Wd~~~~ 113 (113)
T d2fh1a3 94 QGFEPPSFVGWFLGWDDDYW 113 (113)
T ss_dssp TTCCCHHHHTTSSSCCTTCC
T ss_pred CCCCCHHHhcccCCCCCCCC
Confidence 56666899999999987765
No 10
>d1hkya_ g.10.1.3 (A:) Pan module from microneme protein 5 (MIC-5) {Eimeria tenella [TaxId: 5802]}
Probab=4.48 E-value=41 Score=24.92 Aligned_cols=31 Identities=35% Similarity=0.619 Sum_probs=23.5
Q ss_pred hchhhhhccccchhhhHHHHHHHHHhhcccc
Q 016667 334 FGNGLQFMGGQAAGYAAADAVQVSFNACKKS 364 (385)
Q Consensus 334 ~Gn~lqfmggqaAGyAaAdavqa~~~~~~~~ 364 (385)
.-||.+|.||.+..-|-|-.-||--.+|.|.
T Consensus 14 yqngvsftggkaiseakaassqacqelcekd 44 (86)
T d1hkya_ 14 YQNGVSFTGGKAISEAKAASSQACQELCEKD 44 (86)
T ss_dssp CEESCCCBSSCCSEEECCSSHHHHHHHHHHC
T ss_pred hhccccccCchhhhHHHHHhHHHHHHHHhcc
Confidence 4578999999887776666667777778764
Done!