BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016670
         (385 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 34.3 bits (77), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 178 WQPKACNLPRFDARNMLQKLRNRRLVFVGDSIGRNQWESLLCMLASAVTNKSSIYE 233
           WQP  C L ++ +      LR +R+ FVGDS  R  + S + M+   V    + +E
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHE 119


>sp|Q9RGS4|YIDC_STACT Membrane protein insertase YidC OS=Staphylococcus carnosus (strain
           TM300) GN=yidC PE=3 SV=2
          Length = 289

 Score = 33.1 bits (74), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 19  EKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRT- 77
           EK+++  +   + +     ++ +KK+  +NP++  LG L  ++   I +G FF L Y + 
Sbjct: 100 EKVQRARTQEDKMAANQEMMEVYKKYD-MNPMQSMLGCLPMLIQMPIIMGLFFVLKYPSP 158

Query: 78  --VTRRLHYHDPSWLGLAVP 95
             +T   H+    W  LA P
Sbjct: 159 GGITEHSHF---LWFNLAKP 175


>sp|Q72F03|AMPA_DESVH Probable cytosol aminopeptidase OS=Desulfovibrio vulgaris (strain
           Hildenborough / ATCC 29579 / NCIMB 8303) GN=pepA PE=3
           SV=1
          Length = 507

 Score = 32.0 bits (71), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 30/77 (38%)

Query: 43  KFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTVTRRLHYHDPSWLGLAVPFSSSPSS 102
           +  R+ P E     +   +V    +G + Y  +RTV       DP WL L     + P  
Sbjct: 113 QLGRMAPTEHDALRVAEEVVCGALLGLYRYDRFRTVKDDERAEDPRWLALLCEGKNVPDD 172

Query: 103 SSSAAAAAAEEPLGLGV 119
              AA       LG+GV
Sbjct: 173 LHGAARKGEAVALGMGV 189


>sp|Q49Z38|YIDC_STAS1 Membrane protein insertase YidC OS=Staphylococcus saprophyticus
           subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
           GN=yidC PE=3 SV=1
          Length = 289

 Score = 32.0 bits (71), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 19  EKMRKNTSPVAQESDTMTHLDFWKKFKRLNPLEPSLGILGFILVAAIFIGCFFYLDYRTV 78
           EK++++ +   + +     ++ +KK+  +NP++  LG L  ++   I +G FF L Y + 
Sbjct: 100 EKVKRSRTQEEKMAANSEMMEVYKKYD-MNPMKSMLGCLPILIQMPIIMGLFFVLKYPSS 158

Query: 79  TRRLHYHDPSWLGLAVP 95
                +    W  LA P
Sbjct: 159 GGFTEHPYFLWFNLAKP 175


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,020,872
Number of Sequences: 539616
Number of extensions: 6572182
Number of successful extensions: 19541
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19530
Number of HSP's gapped (non-prelim): 14
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)