Query 016673
Match_columns 385
No_of_seqs 380 out of 2128
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 17:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.3E-37 2.2E-41 286.5 34.2 335 22-373 6-364 (491)
2 3o7q_A L-fucose-proton symport 100.0 5.3E-31 1.8E-35 242.7 24.9 291 26-371 24-345 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 9.7E-31 3.3E-35 241.8 19.2 307 21-368 21-338 (451)
4 2gfp_A EMRD, multidrug resista 99.9 1.5E-27 5.1E-32 215.1 8.5 233 79-351 31-265 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 6.5E-25 2.2E-29 205.1 22.2 290 77-371 48-374 (491)
6 2xut_A Proton/peptide symporte 99.8 5.3E-20 1.8E-24 173.2 18.7 141 80-222 51-196 (524)
7 2cfq_A Lactose permease; trans 99.8 2.1E-20 7.3E-25 170.7 8.2 258 79-368 39-306 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.7E-12 5.8E-17 119.4 14.7 144 79-224 284-433 (451)
9 2cfq_A Lactose permease; trans 99.4 2.1E-12 7.3E-17 117.6 9.9 146 81-228 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.3 1.5E-11 5E-16 112.7 12.5 141 79-224 291-432 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.2 3.4E-11 1.1E-15 112.1 9.6 140 81-223 317-470 (491)
12 4gc0_A D-xylose-proton symport 99.2 6.5E-10 2.2E-14 103.3 15.4 148 80-228 309-467 (491)
13 2gfp_A EMRD, multidrug resista 98.8 6.9E-10 2.3E-14 99.4 2.3 127 79-210 231-362 (375)
14 2xut_A Proton/peptide symporte 98.8 1.7E-08 5.7E-13 94.6 9.7 140 84-223 336-501 (524)
15 2g9p_A Antimicrobial peptide l 70.2 2.3 7.8E-05 19.6 1.3 14 102-115 2-15 (26)
16 4dve_A Biotin transporter BIOY 22.3 1.8E+02 0.0061 22.6 5.6 21 91-111 101-121 (198)
17 4aw6_A CAAX prenyl protease 1 20.2 4.8E+02 0.017 23.5 10.1 70 303-372 139-216 (482)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.3e-37 Score=286.50 Aligned_cols=335 Identities=27% Similarity=0.462 Sum_probs=266.8
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhh
Q 016673 22 ITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTF 101 (385)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~ 101 (385)
.+++.+.++++++++.+++|||.++++.+. |.+.++|..+.. ...+.+.++.+++.+++.+|..+|++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~~----------~~~~~~~~~~g~~~s~~~~G~~iG~~ 73 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQN----------LSESAANSLLGFCVASALIGCIIGGA 73 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGGC----------CCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCC----------CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999998763 566666542211 11124667889999999999999999
Q ss_pred hhhhhhhhhcchHHHHHHHHHHHHHHHHHH------------------hhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhh
Q 016673 102 GASYVTRSRGRRASIMVGSVSFFIGAILNA------------------CAVHISMLLLGRIFLGMGIGFGNQAVPLYLSE 163 (385)
Q Consensus 102 ~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~ 163 (385)
++|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|...+..+.+++|
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E 153 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE 153 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 47899999999999999999999999999999
Q ss_pred cCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccC------CcchhHHHhhhHHHHHHHHHhhcccccchhHHHhcCCH
Q 016673 164 MAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIH------PWGWRLSLGLATVPATLMFVGGLFLPETPNSLVEQGKL 237 (385)
Q Consensus 164 ~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 237 (385)
+.|+++|++..++.+.+...|.++++.++....... ...||+.+.+..++.++..+..+++||+|+|+..+++.
T Consensus 154 ~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~ 233 (491)
T 4gc0_A 154 LAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQ 233 (491)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH
T ss_pred hCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch
Confidence 999999999999999999999999998875544322 25789999999998888888889999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHhcC
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQSLG 317 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 317 (385)
+++.+..++....+..+++..+..+..+.+++. ..... ....++...... ...+.+..+.+....|.|.+.+..+
T Consensus 234 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 234 EQAEGILRKIMGNTLATQAVQEIKHSLDHGRKT-GGRLL---MFGVGVIVIGVM-LSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHHH---HSCCTHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred hHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhh-hhHHH---HhcccHHHHHHH-HHHHHHHhhhhHHHhcchHHHHhcC
Confidence 999988887765443333333222222222211 11111 122233444444 5677778888889999999998888
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHhh
Q 016673 318 FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSNM 373 (385)
Q Consensus 318 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
.+...........++..+++.++++++.||+|||+.++.+...+.++.+.++....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 88888888888889999999999999999999999999998888888877766543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=5.3e-31 Score=242.68 Aligned_cols=291 Identities=13% Similarity=0.161 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHhhhhhh
Q 016673 26 FLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVSTFGASY 105 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~g~ 105 (385)
.+.....+++..+..+++....++.. |.+.+++ +++..+.+++.+.+.++..+++++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~ 83 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGI 83 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555556677777766655442 4444444 589999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHH
Q 016673 106 VTRSRGRRASIMVGSVSFFIGAILN---ACAVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTC 182 (385)
Q Consensus 106 l~d~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 182 (385)
++||+|||++++++.++.+++.+++ ++++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..
T Consensus 84 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCcc------------------------hhHHHhhhHHHHHHHHHhhcc--cccchhHHHhcCC
Q 016673 183 LGILVANLINYGTEKIHPWG------------------------WRLSLGLATVPATLMFVGGLF--LPETPNSLVEQGK 236 (385)
Q Consensus 183 ~g~~i~~~~~~~~~~~~~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~ 236 (385)
+|..++|.++.......... ||+.|++.++..++..+..++ .||+++.. ++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~ 240 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS 240 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc
Confidence 99999999965544112112 999998777766655444333 46654310 00
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH-HHh
Q 016673 237 LDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI-FQS 315 (385)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 315 (385)
.++ +++.+.+++++++++..+... +..+...........+.|.+ +++
T Consensus 241 ~~~---------------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 241 DAK---------------------------QGSFSASLSRLARIRHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CSS---------------------------TTSHHHHHHHHTTCSHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---------------------------ccchhhhHHHHHhChHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 000011233444443322222 23333444556677888888 887
Q ss_pred -cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHH
Q 016673 316 -LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHS 371 (385)
Q Consensus 316 -~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~ 371 (385)
+|+++.+++.......++.+++.++.+++.||++||+.+..+.++..++.+++...
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 345 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA 345 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc
Confidence 59999999999999999999999999999999999999998888877776665543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=9.7e-31 Score=241.82 Aligned_cols=307 Identities=12% Similarity=0.051 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHHHhhhhhccccccccccccchhHHHhhhhhhhhhhcccccccccccCCchHHHHHHHHHHHHHHhHh
Q 016673 21 RITSYFLIACMVAAMGGSLFGYDLGVSGGVTSMDDFLKEFFPKVYRRKQAHLTETDYCKYDNQVLTLFTSSLYFAGLVST 100 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~ 100 (385)
+.+++++......+++.+..+++...+++.. |.+ .+++ .+..+.+++.+++.++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~-~s~~~~g~~~~~~~~~~~~~~ 79 (451)
T 1pw4_A 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL------------------VEQG-FSRGDLGFALSGISIAYGFSK 79 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT------------------TSST-TCSSCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHh-ccHhHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788777776655442 222 2223 588899999999999999999
Q ss_pred hhhhhhhhhhcchHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHhhhhhhhhhhhHHhhhcCCCccchhHHHH
Q 016673 101 FGASYVTRSRGRRASIMVGSVSFFIGAILNAC----AVHISMLLLGRIFLGMGIGFGNQAVPLYLSEMAPAKIRGAVNQL 176 (385)
Q Consensus 101 ~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 176 (385)
+++|+++||+|||++++++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++
T Consensus 80 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 159 (451)
T 1pw4_A 80 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 159 (451)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHHHHHHhh-cccccchhHHHhcCCHHHHHHHHHHHhCCCchh
Q 016673 177 FQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVGG-LFLPETPNSLVEQGKLDEARKVLEKVRGTANVD 254 (385)
Q Consensus 177 ~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (385)
.+.+..+|.+++|.+++... +..+ ||+.|++.+++.++..+.. +++||+|+....+++.++ ..+.+
T Consensus 160 ~~~~~~~g~~~g~~~~~~l~--~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 227 (451)
T 1pw4_A 160 WNCAHNVGGGIPPLLFLLGM--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KNDYP 227 (451)
T ss_dssp HHHHHHHHHTSHHHHHHHHH--HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC--
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------ccccc
Confidence 99999999999999975443 3346 9999999888877665444 567888754321111110 00000
Q ss_pred HHHHHHHHHHHHHHHhcCChhhh-hccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHH
Q 016673 255 AEFSDLIDASNAARAIKNPFRNL-FKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGI 332 (385)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 332 (385)
.+ .+ .+++++.+.++. .+...+.+...... +..+...........+.|.++++ +|+++.+++.......+
T Consensus 228 ~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 228 DD----YN---EKAEQELTAKQIFMQYVLPNKLLWYIA-IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp ------------------CCTHHHHHHTSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred cc----ch---hhhhcccccccchHHHHHcCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00 00 001111222222 11111222223233 34455555667788899999988 89999999999999999
Q ss_pred HHHHHHHHHHHhhccc--cchhHHHHhhHHHH-HHHHHH
Q 016673 333 ALCIAALISMAFVDKF--GRRAFFLEAGTEMI-IYMVTT 368 (385)
Q Consensus 333 ~~~~~~~~~g~l~d~~--~~r~~~~~~~~~~~-~~~~~~ 368 (385)
+.+++.++.+++.||+ +||+.+..+..+.. ++.+++
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99988877766655 444443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1.5e-27 Score=215.14 Aligned_cols=233 Identities=17% Similarity=0.232 Sum_probs=190.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.++++.+++.+.+.++..+++++.|+++||+|||++++.+..+..++.++.++++|++.+++.|+++|++.+...+...
T Consensus 31 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~ 110 (375)
T 2gfp_A 31 NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMAR 110 (375)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHh-hcccccchhHHHhcCCH
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVG-GLFLPETPNSLVEQGKL 237 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~ 237 (385)
+++.|++|+++|++++++.+....+|..++|.+++... +..+||+.|++.++..++..+. .+++||+++... ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 185 (375)
T 2gfp_A 111 TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD--TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PR- 185 (375)
T ss_dssp HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CC-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--cc-
Confidence 99999999999999999999999999999999965443 4458999999988887777663 456788764210 00
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHHHHh-c
Q 016673 238 DEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVIFQS-L 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 316 (385)
++.++++++.++++..+... +..+...........+.|.++++ .
T Consensus 186 ------------------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 186 ------------------------------TRLLTSYKTLFGNSGFNCYL-----LMLIGGLAGIAAFEACSGVLMGAVL 230 (375)
T ss_dssp ------------------------------CCTTTCSTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCSCSSHHHH
T ss_pred ------------------------------ccHHHHHHHHhcCcchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123344555443322222 23334444556677778888777 8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 016673 317 GFGSGAALYSSVITGIALCIAALISMAFVDKFGRR 351 (385)
Q Consensus 317 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 351 (385)
|.++.+.+.......++.+++.++.+++.||.+++
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999873
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=6.5e-25 Score=205.07 Aligned_cols=290 Identities=13% Similarity=0.046 Sum_probs=190.6
Q ss_pred cccCCchHHHHHHHHHHHHHHhHhhhhhhhhhh-hcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhh
Q 016673 77 YCKYDNQVLTLFTSSLYFAGLVSTFGASYVTRS-RGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQ 155 (385)
Q Consensus 77 ~~~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 155 (385)
+++.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 347899999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCCCcc--chhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc-ccch----
Q 016673 156 AVPLYLSEMAPAKI--RGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL-PETP---- 228 (385)
Q Consensus 156 ~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~~---- 228 (385)
...+++.|++|+++ |+.++++.+...++|..++|.+++... +..+||+.|++.++..++..+..++. |+..
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ--EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 99999999999988 777888899999999999999965544 34589999999877666655444322 2110
Q ss_pred hHHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHHHHHH------HHHHHHhcCChh-hhhccCCcch
Q 016673 229 NSLVEQGKLDEARKVLEK----------------VRGTANVDAEFSDLIDA------SNAARAIKNPFR-NLFKKKNRPQ 285 (385)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~ 285 (385)
+...++.+.++..+..+. ..+..+.+......... ....+..+.... ...+++. ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV-VS 284 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C-TT
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH-HH
Confidence 000011122232222221 11111111111000000 000000000000 0011111 11
Q ss_pred HHHHHhHHHHHHHccchHHHHHhHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH-----HhhH
Q 016673 286 LVIGALGIPAFQQLTGMNSILFYAPVIFQS-LGFGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFL-----EAGT 359 (385)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~-----~~~~ 359 (385)
.... . ...+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+..
T Consensus 285 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 285 YIPL-F-IAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp HHHH-H-HHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHH
T ss_pred HHHH-H-HHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 1111 1 12222233334445566777776 6777677788888889999999999999999999886544 6666
Q ss_pred HHHHHHHHHHHH
Q 016673 360 EMIIYMVTTLHS 371 (385)
Q Consensus 360 ~~~~~~~~~~~~ 371 (385)
+.+++.+++...
T Consensus 363 ~~~~~~~~~~~~ 374 (491)
T 4aps_A 363 FAGLSFLLMAIP 374 (491)
T ss_dssp HHHHHHTTTHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=5.3e-20 Score=173.18 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=126.4
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhh-cchHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhhhhhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSR-GRRASIMVGSVSFFIGAILNACAV-HISMLLLGRIFLGMGIGFGNQAV 157 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~ 157 (385)
.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ |++.++++|+++|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 7899999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred hHHhhhcCCCccchhHHHH---HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhc
Q 016673 158 PLYLSEMAPAKIRGAVNQL---FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGL 222 (385)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 222 (385)
.+++.|++|+++|+++.+. .+...++|..++|.+++.. .+..+||+.|++.++..++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL--LKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH--HHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8899999999999985433 3446899999988887766655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.81 E-value=2.1e-20 Score=170.65 Aligned_cols=258 Identities=12% Similarity=0.065 Sum_probs=157.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHH---HHHhhhhH-HHHHHHHHHHHhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAI---LNACAVHI-SMLLLGRIFLGMGIGFGN 154 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~---~~~~~~~~-~~~~~~r~l~G~~~g~~~ 154 (385)
+.++.+.|++.+.+.++..++++++|+++||+|||++++++..+..++.. ...+.+.. ..+...+++.|++.+...
T Consensus 39 g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 118 (417)
T 2cfq_A 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118 (417)
T ss_dssp CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998887765322 12233222 123455666666665555
Q ss_pred hhhhHHhhhcCCC--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcccccchhHHH
Q 016673 155 QAVPLYLSEMAPA--KIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFLPETPNSLV 232 (385)
Q Consensus 155 ~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~ 232 (385)
+.....+.++.++ ++|+...+.......+|..++|.+++.... .+||+.|++.++..++..+..++.+|+++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (417)
T 2cfq_A 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT---INNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195 (417)
T ss_dssp HTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH---HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS
T ss_pred hhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH---hchhHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 4444444444433 455767777777788888899988655443 36999999887766555555555444331100
Q ss_pred hcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHhcCChhhhhccCCcchHHHHHhHHHHHHHccchHHHHHhHHHH
Q 016673 233 EQGKLDEARKVLEKVRGTANVDAEFSDLIDASNAARAIKNPFRNLFKKKNRPQLVIGALGIPAFQQLTGMNSILFYAPVI 312 (385)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (385)
++++.++ .+.++. ...+++++++++..+...+ ..+.....+.....+.|.+
T Consensus 196 ~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 196 TVANAVG--------ANHSAF----------------SLKLALELFRQPKLWFLSL-----YVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp CSSSSSS--------SCCCCC----------------CHHHHHHHTTCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--------cccccc----------------cHHHHHHHhcCCchhhHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000 0001223333322222111 1122222233344456777
Q ss_pred HHh-cC---CCCchHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHH
Q 016673 313 FQS-LG---FGSGAALYSSVITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTT 368 (385)
Q Consensus 313 ~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~ 368 (385)
+.+ ++ .+....+.......++.+++.++.++++||+|||+.+..+..+.++..+++
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 665 33 223445677777788889999999999999999998888777776665444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=1.7e-12 Score=119.42 Aligned_cols=144 Identities=18% Similarity=0.150 Sum_probs=123.3
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhh--cchHHHHHHHHHHH-HHHHHHHhh--hhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSR--GRRASIMVGSVSFF-IGAILNACA--VHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+..
T Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 284 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhch
Confidence 57899999999999999999999999999999 99999988887776 666666665 37788888899999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhccc
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCL-GILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
.+....++.|.+|+++|+++.++.+....+ |..++|.+.+... +..||+..|++.++..++..+..+++
T Consensus 364 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV--DFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 898999999999999999999999999999 9999999955444 34579999998888777766655443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35 E-value=2.1e-12 Score=117.59 Aligned_cols=146 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhhHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVPLY 160 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 160 (385)
+....++..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888999999999999999999999999998888888888888888888888888888877777778899
Q ss_pred hhhcCCCccchhHHHH-HHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 161 LSEMAPAKIRGAVNQL-FQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
+.|.+|++.|+.+.+. .+....+|..++|.+++... +..|++..|.+.++..++..+.. ...||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~--~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY--ESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH--HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 48888899999999965443 34578888888888777766554 4456554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=1.5e-11 Score=112.69 Aligned_cols=141 Identities=6% Similarity=-0.039 Sum_probs=114.6
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAVHISMLLLGRIFLGMGIGFGNQAVP 158 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 158 (385)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999988888887665544 888999999999999
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcc-hhHHHhhhHHHHHHHHHhhccc
Q 016673 159 LYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWG-WRLSLGLATVPATLMFVGGLFL 224 (385)
Q Consensus 159 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~ 224 (385)
++..|.+|++ |+.+.++.. ...+|..++|.+.+... +..| ++..|++.++..++..+..++.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~--~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS--DAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH--HHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 888888877 55689999999855444 3345 8888887655554444433333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=3.4e-11 Score=112.08 Aligned_cols=140 Identities=10% Similarity=-0.019 Sum_probs=110.6
Q ss_pred CchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHH-----HHHHHHHHHHHHHHhhh---------hHHHHHHHHHHH
Q 016673 81 DNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIM-----VGSVSFFIGAILNACAV---------HISMLLLGRIFL 146 (385)
Q Consensus 81 ~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~r~l~ 146 (385)
+..+.++..+...++..++.++.|++.||+|||+... .+..+.+++.++..... +.+.+.+.-++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 4355677778888888999999999999999987655 77777777777666643 677888889999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhhHHHHHHHHHhhcc
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLATVPATLMFVGGLF 223 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 223 (385)
|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+... +.++.+.|.+.+..+++..+..++
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN---AKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG---GSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999954333 235667777777776666555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.15 E-value=6.5e-10 Score=103.35 Aligned_cols=148 Identities=19% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHH--HHHhhhhhh
Q 016673 80 YDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVSFFIGAILNACAV----HISMLLLGRI--FLGMGIGFG 153 (385)
Q Consensus 80 ~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~r~--l~G~~~g~~ 153 (385)
.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +.+..++.-+ ..+++ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 387 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MSW 387 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TTT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hHH
Confidence 3555566667777888899999999999999999999999888888777665421 1122222222 22222 233
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccc----cCCcchhHHHhhhHHHHHHHHHhh-cccccch
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEK----IHPWGWRLSLGLATVPATLMFVGG-LFLPETP 228 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~----~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~~ 228 (385)
.+....+.+|.+|.+.|++++++......+|..+++.+...... ....++.+.|++.++++++..+.. +++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 46677899999999999999999999999998888766332221 112345567777777777766554 6689984
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.85 E-value=6.9e-10 Score=99.39 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=96.7
Q ss_pred cCCchHHHHHHHHHHHHHHhHhhhhhhhhhhhcchHHHHHHHHH-HHHHHH--HHHh--hhhHHHHHHHHHHHHhhhhhh
Q 016673 79 KYDNQVLTLFTSSLYFAGLVSTFGASYVTRSRGRRASIMVGSVS-FFIGAI--LNAC--AVHISMLLLGRIFLGMGIGFG 153 (385)
Q Consensus 79 ~~~~~~~~~~~s~~~l~~~~~~~~~g~l~d~~Grr~~~~~~~~~-~~i~~~--~~~~--~~~~~~~~~~r~l~G~~~g~~ 153 (385)
+.++.+.+++.+...++..++.++.+++.||+|+|. ..+... ...+.. .... .++.+.+++..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 357788999999999999999999999999999833 333322 222222 2222 247777888899999999999
Q ss_pred hhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcchhHHHhhh
Q 016673 154 NQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGWRLSLGLA 210 (385)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~wr~~f~~~ 210 (385)
.+...+++.|..| ++|+++.++.+....+|..++|.+.+.. .+..+|+..+.+.
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l--~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML--PQTGQGSLGLLMT 362 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccHHHHHH
Confidence 9999999999998 8999999999999999999998884333 2333566666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.78 E-value=1.7e-08 Score=94.64 Aligned_cols=140 Identities=13% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhh----hhhcc----hHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHHHH
Q 016673 84 VLTLFTSSLYFAGLVSTFGASYVT----RSRGR----RASIMVGSVSFFIGAILNACA---------VHISMLLLGRIFL 146 (385)
Q Consensus 84 ~~~~~~s~~~l~~~~~~~~~g~l~----d~~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~r~l~ 146 (385)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666677777777888877765 55543 356777888888887777664 3677788889999
Q ss_pred HhhhhhhhhhhhHHhhhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhccccCCcch---------hHHHhhhHHHHHHH
Q 016673 147 GMGIGFGNQAVPLYLSEMAPAKIRGAVNQLFQLTTCLGILVANLINYGTEKIHPWGW---------RLSLGLATVPATLM 217 (385)
Q Consensus 147 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~w---------r~~f~~~~~~~~~~ 217 (385)
|++.+...+....++.|..|+++|++++++.+....+|..++|.+.+........+| +..|++.+...++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999655443211134 33366666666665
Q ss_pred HHhhcc
Q 016673 218 FVGGLF 223 (385)
Q Consensus 218 ~~~~~~ 223 (385)
.+..++
T Consensus 496 ~~~~~~ 501 (524)
T 2xut_A 496 AIVFAL 501 (524)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 554443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=70.17 E-value=2.3 Score=19.63 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=11.4
Q ss_pred hhhhhhhhhcchHH
Q 016673 102 GASYVTRSRGRRAS 115 (385)
Q Consensus 102 ~~g~l~d~~Grr~~ 115 (385)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.34 E-value=1.8e+02 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHHHhHhhhhhhhhhhhc
Q 016673 91 SLYFAGLVSTFGASYVTRSRG 111 (385)
Q Consensus 91 ~~~l~~~~~~~~~g~l~d~~G 111 (385)
-|.+|..++..+.|++.||..
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~ 121 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLK 121 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 345555666666666666654
No 17
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=20.16 E-value=4.8e+02 Score=23.53 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHh-cCCCCchHHHHH-------HHHHHHHHHHHHHHHHhhccccchhHHHHhhHHHHHHHHHHHHHh
Q 016673 303 NSILFYAPVIFQS-LGFGSGAALYSS-------VITGIALCIAALISMAFVDKFGRRAFFLEAGTEMIIYMVTTLHSN 372 (385)
Q Consensus 303 ~~~~~~~~~~~~~-~g~s~~~~~~~~-------~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~ 372 (385)
..+..|....+++ +|++....+... .+..+.+.+.....-++.++.|++..+..-....++.+++..+.+
T Consensus 139 LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iyP 216 (482)
T 4aw6_A 139 LPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYA 216 (482)
T ss_dssp HHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555665 999876655321 111122222222233567888888766555555555555544443
Done!