BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016675
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/388 (56%), Positives = 257/388 (66%), Gaps = 24/388 (6%)
Query: 5 GMEEGKKPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLE 64
G E E H+TSAAAFVEGGIQD+CDDACSICLE F ESDPST+TSCKHE+HLQC+LE
Sbjct: 3 GAGETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILE 62
Query: 65 WCQRSSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIFHHPTFGDFELQHLP 124
WCQRSSQCPMCWQ ISLKD TSQELLEAVEQER+ R NP RNATIF HPT GDFELQHLP
Sbjct: 63 WCQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHLP 122
Query: 125 VGASDTDLEEHILQHLTAAAAMGRAHHFGRRESHRNRSAAHGRPHFFVFSAHPGGAPPGA 184
VG + ++EE I+QHL AAAAMGRA H RRE HR+RS++ G F VFS+ P + P
Sbjct: 123 VGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNASSPPP 182
Query: 185 VAQGGGTEPAPLAGASPS-VPLSSSGNDSSQHMLQ----FHPIQTNQNSSSASGSAVAQA 239
+ + S +P ++ G S Q Q HP Q S SAS S
Sbjct: 183 HPPMPSSPSQRDESDTVSNLPHNALGEGSHQSNTQPPTSSHPRQV---SPSASDS----- 234
Query: 240 TRRGFSFNNRTSSQTSSPTHDRAGPSDLQSFSESLKSRFNAVSMRYKESISKSTRGWKER 299
N+R +Q+S DRAGPS+LQSFSESLKSR NAVS RYKESISK+TR WK+R
Sbjct: 235 -------NSRPLNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDR 287
Query: 300 LFSRNASMPGTGSENRSE-NVGITSVSRLMEQLGTGESTRGSEASVSSHMANPLVTEQNS 358
LFSRN SM GSE + E + GI +VSR+ME+L T E++R S ASVS N E N+
Sbjct: 288 LFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENH-TPETNN 346
Query: 359 ENNTETRGENPVNNE--TPPSCAASSFS 384
E+N G+ NE +CA S S
Sbjct: 347 EHNRAAAGDEHSVNERGVKETCATGSGS 374
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 20 AAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
A V ++ DDACSICLE F+ DPSTVTSCKHE+HLQC++EW QRS +CP+CWQ
Sbjct: 31 ALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQLF 90
Query: 80 SLKDATSQELLEAVEQERSIRA-NPPRNATIFHHPTFGDFELQHLPVGASDTDLEEHILQ 138
L+D SQELL AVE+ER ++ N ++ I H + DF + S D E L+
Sbjct: 91 VLRDPASQELLAAVEKERLLKTRNISSSSPISIHHSHDDFHSEEEESQFSSFD--EQFLR 148
Query: 139 HLTAAA 144
HLT AA
Sbjct: 149 HLTEAA 154
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 269 SFSESLKSRFNAVSMRYKESISKSTRGWKERLFSRNASMPG-TGSENRSENVGITSVSRL 327
S E++KS+ A S +YKESISKS +G KE+L +RN S+ + R N GI V+R+
Sbjct: 252 SLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARM 311
Query: 328 MEQLGTGESTRGSEASVSSHMA 349
+E++ G A VS+ A
Sbjct: 312 IERMDFSSKRFGGSAHVSTSTA 333
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
+D C CLEE++ +P VT C H FHL C+ EW +RS CP+C
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC 221
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 30 SCDDA--CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQ 87
SC A C+ICLEEFSE V SC HEFH CV W + CP+C I+ D+ SQ
Sbjct: 265 SCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMFNITEGDSFSQ 324
Query: 88 EL 89
L
Sbjct: 325 SL 326
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%)
Query: 20 AAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
A + + G S C+ICLEEFSE V SC HEFH CV W + CP+C I
Sbjct: 257 AEWPDSGSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNI 316
Query: 80 SLKDATSQ 87
D+ SQ
Sbjct: 317 VEGDSFSQ 324
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83
EGG D CS+C E E + CKHEFH +C+L W ++++ CP+C + D
Sbjct: 64 EGG-----DLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDD 118
Query: 84 ATSQEL 89
+EL
Sbjct: 119 PVYEEL 124
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
++G DD C+IC EF+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 83 D 83
D
Sbjct: 593 D 593
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 18 SAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77
S ++ + G+ CS+C+ ++ + C HEFH+ C+ W + CP+C +
Sbjct: 597 STRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRR 656
Query: 78 PISLKDATS 86
P+ ATS
Sbjct: 657 PVLEFGATS 665
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 27 IQDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85
++D D CSICL EF + D +++C H FH C+ W + CP+C + + ++D T
Sbjct: 146 VKDHGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRT 205
Query: 86 SQE 88
S E
Sbjct: 206 SLE 208
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 28 QDSCDDA--CSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMC 75
QDSC D CSICL E + D + + C H FH++C+ W Q S CP+C
Sbjct: 118 QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPIC 168
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
++G +D C+IC EF+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 83 D 83
D
Sbjct: 593 D 593
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
++G +D C+IC EF+ S + +T C H FH C+ +W CPMC Q + ++
Sbjct: 535 IKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIE 592
Query: 83 D 83
D
Sbjct: 593 D 593
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
CS+C+ E++E + C HE+H+ C+ W +S CP+C + +
Sbjct: 570 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 614
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
CS+C+ E++E + C HE+H+ C+ W +S CP+C + +
Sbjct: 568 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
+D D C+IC+E + +D + CKHEFH C+ W CPMC
Sbjct: 296 KDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMC 343
>sp|Q8BP31|RN122_MOUSE RING finger protein 122 OS=Mus musculus GN=Rnf122 PE=2 SV=1
Length = 155
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQEL 89
C++CLE+F D V C+H FH +C+++W + CPMC +PI+ TSQ +
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSI 147
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPI 79
D C+ICL+E+ + D V C H +H +CV W Q CP+C QP+
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 18 SAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77
S + I CS+C+ ++ + C HEFH+ C+ W + CP+C Q
Sbjct: 615 STRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQ 674
Query: 78 PI 79
P+
Sbjct: 675 PV 676
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
CS+C+ E++E + C HE+H+ C+ W +S CP+C + +
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
+ C++CLE+F D + CKH FH +C+++W + CP+C P+
Sbjct: 76 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 122
>sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 OS=Homo sapiens GN=RNF11 PE=1 SV=1
Length = 154
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQE 88
C IC+ +F DP C H +HL C+ +W RS CP C +P+ +S E
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYE 152
>sp|Q08DI6|RNF11_BOVIN RING finger protein 11 OS=Bos taurus GN=RNF11 PE=2 SV=1
Length = 154
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQE 88
C IC+ +F DP C H +HL C+ +W RS CP C +P+ +S E
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYE 152
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
CS+C+ E++E + C HE+H+ C+ W +S CP+C + +
Sbjct: 585 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 629
>sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 OS=Mus musculus GN=Rnf11 PE=1 SV=1
Length = 154
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQE 88
C IC+ +F DP C H +HL C+ +W RS CP C +P+ +S E
Sbjct: 99 CVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYE 152
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPI 79
D C+ICL+E+ + D V C H +H +CV W Q CP+C QP+
Sbjct: 228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
CS+C+ E++E + C HE+H+ C+ W +S CP+C + +
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAV 590
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPI 79
D C+ICLEE+ + D + C H +H +CV W ++ + CP+C Q +
Sbjct: 238 DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPI 79
D C+ICLEE+ + D + C H +H +CV W ++ + CP+C Q +
Sbjct: 238 DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
+ C++CLE+F D + CKH FH +C+++W + CP+C P+
Sbjct: 76 ELCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCNMPV 122
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
D C ICL+ F + S + C H+F +CV EW + ++CP+C QP
Sbjct: 101 DSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF 146
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79
D C ICL+ F + S + C H+F +CV EW + ++CP+C QP
Sbjct: 100 DSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPF 145
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC-QRSSQCPMCWQPI 79
D C+ICL+E+ + D + C H +H +CV W Q CP+C QP+
Sbjct: 228 DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 35 CSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMC 75
C++CL EFSE D + C H FHL C+ W Q +S CP+C
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLC 184
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPISLKDATSQELLE 91
D C+ICL+E+ + D + C H +H +CV W ++ + CP+C Q + S +
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETD 297
Query: 92 AVEQERSIRANPP 104
+ ++E + N P
Sbjct: 298 SSQEENEVSENTP 310
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 35 CSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92
CS+CL EF E + + +C H FH+ C+ W Q ++ CP+C +S + + + +L+ A
Sbjct: 134 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISA 192
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 21 AFVEGGIQDSCDDA--CSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQ 77
F+ G + S + C++CL EFS++D + C H FHL C+ W +S CP+C +
Sbjct: 191 VFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250
Query: 78 PIS 80
+S
Sbjct: 251 SLS 253
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
D C++C+E + ++D V CKH FH CV W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
D C++C+E + ++D V CKH FH CV W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 1 MEVLGMEEGK---KPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEF 57
+EV E+ K + E+ +T +E +Q CSIC E F E+ +C H F
Sbjct: 361 LEVTKEEKEKAKAQKEEVVTQMTEVLESELQ------CSICSELFIEA---VTLNCAHSF 411
Query: 58 HLQCVLEWCQRSSQCPMCWQPIS 80
C+ EW R +CPMCWQ I+
Sbjct: 412 CQHCISEWRNRKDKCPMCWQNIT 434
>sp|Q9H9V4|RN122_HUMAN RING finger protein 122 OS=Homo sapiens GN=RNF122 PE=2 SV=2
Length = 155
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80
C++CLE+F D V C+H FH +C+++W + CPMC +PI+
Sbjct: 93 CAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIA 138
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 11 KPEDHMTSAAAFVEGGIQDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRS 69
KP TSAA +C D C++CL EF E D T+ C H FHL+C+ EW +
Sbjct: 142 KPAVGKTSAA---------NCRD-CAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSH 191
Query: 70 SQCPMC 75
CP+C
Sbjct: 192 PNCPLC 197
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPI 79
D C+ICL+E+ + D + C H +H +CV W ++ + CP+C Q +
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPI 79
D C+ICL+E+ + D + C H +H +CV W ++ + CP+C Q +
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQ-CPMCWQPI 79
D C+ICL+E+ + D + C H +H +CV W ++ + CP+C Q +
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 35 CSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82
C +CL E ++ D + V SC H FH++C+ W Q +S CP+C + + LK
Sbjct: 88 CVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLK 136
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
D C++C+E + ++D + CKH FH CV W CPMC
Sbjct: 262 DHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMC 304
>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55
PE=1 SV=1
Length = 301
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 17 TSAAAFVEG-GIQDSCDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPM 74
+ F +G GI D + CS+CL EF E + + C H FHL C+ W CP+
Sbjct: 118 ITVVGFKKGEGIIDGTE--CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPL 175
Query: 75 CWQPISL 81
C P+ L
Sbjct: 176 CRAPVLL 182
>sp|O80927|ATL33_ARATH RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2
SV=2
Length = 235
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 35 CSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85
CS+CL F++SD ++ CKH FH+ C+ W + CP+C +S+K T
Sbjct: 142 CSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQT 193
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE 94
C +CL EF E + CKH FH C+L W +++ CP+C + +A +E + E
Sbjct: 79 CPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKE 138
Query: 95 QER 97
+ R
Sbjct: 139 RRR 141
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75
G+ D + C++CL+ F V CKHEFH CV W CP+C
Sbjct: 316 GLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLC 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,692,969
Number of Sequences: 539616
Number of extensions: 6237708
Number of successful extensions: 20831
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 400
Number of HSP's that attempted gapping in prelim test: 19162
Number of HSP's gapped (non-prelim): 1513
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)