Query 016675
Match_columns 385
No_of_seqs 243 out of 1602
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 1.6E-12 3.5E-17 92.9 2.4 44 33-76 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.1 5.5E-11 1.2E-15 119.1 2.1 49 33-81 230-279 (348)
3 PHA02929 N1R/p28-like protein; 99.0 2.3E-10 5E-15 109.8 4.6 55 27-81 169-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.0 3.4E-10 7.3E-15 89.9 4.0 45 32-76 19-73 (73)
5 PLN03208 E3 ubiquitin-protein 99.0 3.1E-10 6.8E-15 105.5 4.1 54 28-84 14-83 (193)
6 KOG0823 Predicted E3 ubiquitin 99.0 3.5E-10 7.5E-15 107.2 3.1 54 28-84 43-99 (230)
7 smart00504 Ubox Modified RING 98.9 1.1E-09 2.3E-14 82.9 5.1 58 32-92 1-58 (63)
8 KOG0317 Predicted E3 ubiquitin 98.9 4.3E-10 9.3E-15 109.5 3.5 53 28-83 235-287 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.3E-09 2.8E-14 80.0 3.3 47 31-80 1-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.3E-09 2.8E-14 76.2 2.5 39 35-75 1-39 (39)
11 PF15227 zf-C3HC4_4: zinc fing 98.8 2.7E-09 5.8E-14 76.3 3.1 38 35-75 1-42 (42)
12 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.1E-14 107.7 5.1 60 31-93 25-84 (397)
13 COG5243 HRD1 HRD ubiquitin lig 98.8 3.7E-09 7.9E-14 106.0 3.4 53 29-81 284-346 (491)
14 KOG0320 Predicted E3 ubiquitin 98.8 3.4E-09 7.3E-14 97.1 2.4 55 29-84 128-182 (187)
15 PF12861 zf-Apc11: Anaphase-pr 98.7 6.7E-09 1.5E-13 85.0 3.7 52 31-82 20-84 (85)
16 cd00162 RING RING-finger (Real 98.7 8E-09 1.7E-13 71.4 3.5 44 34-79 1-45 (45)
17 PHA02926 zinc finger-like prot 98.7 8.3E-09 1.8E-13 97.7 3.7 62 20-81 158-231 (242)
18 COG5540 RING-finger-containing 98.7 8.4E-09 1.8E-13 101.2 3.2 50 32-81 323-373 (374)
19 KOG0311 Predicted E3 ubiquitin 98.7 3.3E-09 7.2E-14 105.7 -0.3 49 32-82 43-92 (381)
20 KOG0287 Postreplication repair 98.6 1.4E-08 3E-13 101.0 3.0 62 32-96 23-84 (442)
21 PF00097 zf-C3HC4: Zinc finger 98.6 2E-08 4.3E-13 70.3 2.5 39 35-75 1-41 (41)
22 PF04564 U-box: U-box domain; 98.6 5.9E-08 1.3E-12 76.8 4.5 61 31-94 3-64 (73)
23 PF14634 zf-RING_5: zinc-RING 98.6 4.3E-08 9.3E-13 70.3 3.2 44 34-77 1-44 (44)
24 KOG2164 Predicted E3 ubiquitin 98.5 3.1E-08 6.7E-13 102.9 2.6 53 32-87 186-243 (513)
25 KOG0802 E3 ubiquitin ligase [P 98.5 7.2E-08 1.6E-12 102.3 2.5 52 30-81 289-342 (543)
26 smart00184 RING Ring finger. E 98.4 1.8E-07 4E-12 62.3 3.4 38 35-75 1-39 (39)
27 COG5574 PEX10 RING-finger-cont 98.4 1.1E-07 2.3E-12 92.0 2.6 51 30-83 213-265 (271)
28 KOG2177 Predicted E3 ubiquitin 98.3 2.2E-07 4.7E-12 85.6 2.0 45 30-77 11-55 (386)
29 PF13445 zf-RING_UBOX: RING-ty 98.3 6.3E-07 1.4E-11 64.7 2.7 38 35-73 1-43 (43)
30 COG5194 APC11 Component of SCF 98.2 5.6E-07 1.2E-11 72.8 2.5 36 48-83 49-84 (88)
31 COG5432 RAD18 RING-finger-cont 98.2 6.7E-07 1.5E-11 87.7 2.7 47 32-81 25-71 (391)
32 PF14835 zf-RING_6: zf-RING of 98.2 6.4E-07 1.4E-11 69.8 1.5 58 32-93 7-64 (65)
33 TIGR00570 cdk7 CDK-activating 98.2 1.4E-06 3.1E-11 86.5 4.1 56 32-87 3-61 (309)
34 KOG1493 Anaphase-promoting com 98.1 1.1E-06 2.3E-11 70.7 0.6 51 32-82 20-83 (84)
35 KOG1734 Predicted RING-contain 97.7 8.2E-06 1.8E-10 79.4 0.4 54 29-82 221-283 (328)
36 KOG1039 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 79.5 3.1 58 25-82 154-223 (344)
37 KOG0828 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 82.4 2.3 50 32-81 571-635 (636)
38 KOG2930 SCF ubiquitin ligase, 97.7 1.5E-05 3.2E-10 67.6 1.2 51 31-81 45-109 (114)
39 PF11793 FANCL_C: FANCL C-term 97.6 8.3E-06 1.8E-10 64.4 -1.1 50 32-81 2-67 (70)
40 KOG2660 Locus-specific chromos 97.6 2E-05 4.4E-10 78.5 0.6 48 32-81 15-62 (331)
41 smart00744 RINGv The RING-vari 97.6 7.1E-05 1.5E-09 55.3 3.2 42 34-76 1-49 (49)
42 KOG0978 E3 ubiquitin ligase in 97.5 3.8E-05 8.3E-10 83.4 1.6 50 32-84 643-693 (698)
43 KOG4172 Predicted E3 ubiquitin 97.5 3.8E-05 8.3E-10 58.3 0.7 48 30-80 5-54 (62)
44 KOG0825 PHD Zn-finger protein 97.5 2.7E-05 5.8E-10 84.6 -0.2 55 27-81 118-172 (1134)
45 KOG0804 Cytoplasmic Zn-finger 97.4 5.5E-05 1.2E-09 78.1 1.3 47 32-80 175-222 (493)
46 KOG0824 Predicted E3 ubiquitin 97.4 7.9E-05 1.7E-09 73.7 2.0 48 32-82 7-55 (324)
47 KOG4159 Predicted E3 ubiquitin 97.4 0.00011 2.3E-09 75.8 2.8 56 23-81 75-130 (398)
48 KOG4265 Predicted E3 ubiquitin 97.3 0.00013 2.8E-09 73.6 3.1 48 30-80 288-336 (349)
49 COG5219 Uncharacterized conser 97.3 6.7E-05 1.4E-09 83.0 0.9 52 29-80 1466-1523(1525)
50 KOG1785 Tyrosine kinase negati 97.2 0.00037 8E-09 71.3 5.1 49 33-84 370-420 (563)
51 KOG0827 Predicted E3 ubiquitin 97.2 0.00022 4.8E-09 72.6 2.7 48 33-80 5-56 (465)
52 KOG4445 Uncharacterized conser 97.1 0.00015 3.3E-09 71.7 0.6 51 32-82 115-188 (368)
53 KOG1645 RING-finger-containing 97.0 0.00038 8.3E-09 71.3 2.9 54 31-84 3-60 (463)
54 KOG1813 Predicted E3 ubiquitin 97.0 0.00035 7.6E-09 69.0 2.5 62 32-96 241-302 (313)
55 KOG0297 TNF receptor-associate 97.0 0.00028 6.2E-09 72.5 1.9 54 30-85 19-72 (391)
56 PF11789 zf-Nse: Zinc-finger o 97.0 0.00029 6.3E-09 53.7 1.4 42 31-74 10-53 (57)
57 KOG2879 Predicted E3 ubiquitin 97.0 0.0004 8.8E-09 68.0 2.7 49 30-80 237-287 (298)
58 KOG4692 Predicted E3 ubiquitin 96.9 0.00048 1E-08 69.6 2.7 54 25-81 415-468 (489)
59 COG5152 Uncharacterized conser 96.9 0.00074 1.6E-08 63.6 2.9 51 29-82 193-243 (259)
60 KOG3970 Predicted E3 ubiquitin 96.6 0.0028 6.1E-08 60.8 5.1 61 31-92 49-117 (299)
61 KOG1428 Inhibitor of type V ad 96.4 0.0025 5.4E-08 73.3 3.8 53 29-81 3483-3545(3738)
62 KOG1002 Nucleotide excision re 96.4 0.0016 3.5E-08 68.7 2.2 53 28-83 532-589 (791)
63 KOG1941 Acetylcholine receptor 95.9 0.0025 5.5E-08 65.2 0.7 50 29-78 362-414 (518)
64 COG5222 Uncharacterized conser 95.9 0.0069 1.5E-07 60.3 3.5 49 33-83 275-325 (427)
65 KOG3039 Uncharacterized conser 95.6 0.011 2.3E-07 57.5 3.5 54 31-84 220-274 (303)
66 COG5236 Uncharacterized conser 95.3 0.013 2.8E-07 59.4 3.3 53 24-79 53-107 (493)
67 PF14570 zf-RING_4: RING/Ubox 95.2 0.016 3.6E-07 42.9 2.7 44 35-79 1-47 (48)
68 KOG1814 Predicted E3 ubiquitin 95.2 0.018 3.9E-07 59.4 3.9 47 32-78 184-238 (445)
69 KOG1571 Predicted E3 ubiquitin 95.2 0.01 2.3E-07 60.1 2.1 47 29-81 302-348 (355)
70 KOG4275 Predicted E3 ubiquitin 95.0 0.0042 9.2E-08 61.5 -1.2 42 32-80 300-342 (350)
71 KOG3268 Predicted E3 ubiquitin 95.0 0.021 4.6E-07 53.2 3.4 53 30-82 163-230 (234)
72 COG5175 MOT2 Transcriptional r 94.9 0.017 3.6E-07 58.5 2.7 55 29-83 11-67 (480)
73 KOG0826 Predicted E3 ubiquitin 94.9 0.023 4.9E-07 57.2 3.4 55 24-80 292-346 (357)
74 KOG4739 Uncharacterized protei 94.7 0.01 2.2E-07 57.2 0.6 45 34-81 5-49 (233)
75 PF04641 Rtf2: Rtf2 RING-finge 94.6 0.031 6.8E-07 54.4 3.7 54 29-83 110-164 (260)
76 KOG4185 Predicted E3 ubiquitin 94.6 0.036 7.9E-07 54.2 4.1 49 33-81 4-56 (296)
77 PHA03096 p28-like protein; Pro 94.3 0.025 5.4E-07 56.1 2.2 45 33-77 179-231 (284)
78 PF05883 Baculo_RING: Baculovi 93.8 0.031 6.7E-07 49.8 1.6 45 31-75 25-75 (134)
79 PF03854 zf-P11: P-11 zinc fin 93.6 0.028 6E-07 41.7 0.8 44 34-82 4-48 (50)
80 PF10367 Vps39_2: Vacuolar sor 93.2 0.033 7.3E-07 45.7 0.8 34 29-63 75-108 (109)
81 KOG0298 DEAD box-containing he 92.9 0.03 6.5E-07 64.5 0.0 44 33-78 1154-1197(1394)
82 KOG1952 Transcription factor N 92.6 0.059 1.3E-06 59.9 1.8 46 32-77 191-244 (950)
83 KOG1940 Zn-finger protein [Gen 92.4 0.084 1.8E-06 52.3 2.4 52 29-81 155-207 (276)
84 KOG2817 Predicted E3 ubiquitin 91.9 0.14 2.9E-06 52.9 3.2 49 29-77 331-382 (394)
85 KOG1001 Helicase-like transcri 91.8 0.069 1.5E-06 58.8 1.2 47 33-83 455-503 (674)
86 PF12906 RINGv: RING-variant d 91.8 0.1 2.2E-06 38.1 1.7 40 35-75 1-47 (47)
87 KOG4367 Predicted Zn-finger pr 91.5 0.11 2.4E-06 54.2 2.2 35 30-67 2-36 (699)
88 KOG2932 E3 ubiquitin ligase in 91.5 0.077 1.7E-06 53.2 1.0 42 34-79 92-133 (389)
89 KOG0801 Predicted E3 ubiquitin 91.3 0.068 1.5E-06 49.2 0.3 31 29-59 174-204 (205)
90 KOG2114 Vacuolar assembly/sort 91.2 0.11 2.4E-06 57.9 1.9 41 32-77 840-880 (933)
91 PHA02862 5L protein; Provision 91.0 0.18 4E-06 45.5 2.8 46 32-81 2-54 (156)
92 PF10272 Tmpp129: Putative tra 90.6 0.17 3.7E-06 51.8 2.5 31 53-83 311-354 (358)
93 PF08746 zf-RING-like: RING-li 90.5 0.13 2.9E-06 37.0 1.2 41 35-75 1-43 (43)
94 PHA02825 LAP/PHD finger-like p 89.8 0.3 6.5E-06 44.8 3.1 48 30-81 6-60 (162)
95 PF07800 DUF1644: Protein of u 88.2 0.48 1E-05 43.4 3.3 50 31-83 1-94 (162)
96 PF14447 Prok-RING_4: Prokaryo 88.2 0.27 5.9E-06 37.5 1.5 47 32-83 7-53 (55)
97 KOG4362 Transcriptional regula 86.9 0.22 4.8E-06 54.7 0.5 48 32-82 21-71 (684)
98 KOG3002 Zn finger protein [Gen 86.8 0.47 1E-05 47.6 2.6 45 29-80 45-91 (299)
99 KOG0825 PHD Zn-finger protein 84.6 0.57 1.2E-05 52.2 2.1 54 26-79 90-153 (1134)
100 KOG1812 Predicted E3 ubiquitin 84.3 0.42 9E-06 49.4 1.0 37 32-68 146-183 (384)
101 KOG0827 Predicted E3 ubiquitin 84.0 0.086 1.9E-06 54.3 -4.0 51 32-82 196-247 (465)
102 COG5183 SSM4 Protein involved 83.9 0.77 1.7E-05 51.4 2.8 55 27-82 7-68 (1175)
103 COG5220 TFB3 Cdk activating ki 83.5 0.42 9.1E-06 46.6 0.5 51 29-79 7-63 (314)
104 KOG2034 Vacuolar sorting prote 83.0 0.69 1.5E-05 52.1 2.0 38 29-67 814-851 (911)
105 KOG3800 Predicted E3 ubiquitin 81.9 1.4 3.1E-05 43.9 3.5 50 34-83 2-54 (300)
106 KOG3899 Uncharacterized conser 80.2 0.84 1.8E-05 45.7 1.3 32 53-84 325-369 (381)
107 KOG3053 Uncharacterized conser 79.7 1.3 2.7E-05 43.7 2.3 55 30-84 18-86 (293)
108 PF02891 zf-MIZ: MIZ/SP-RING z 79.4 1.8 3.9E-05 32.0 2.6 43 33-78 3-50 (50)
109 COG5109 Uncharacterized conser 78.2 1.5 3.3E-05 44.3 2.4 49 29-77 333-384 (396)
110 KOG3161 Predicted E3 ubiquitin 76.8 0.94 2E-05 49.6 0.6 40 32-73 11-51 (861)
111 KOG3579 Predicted E3 ubiquitin 75.6 1.8 3.8E-05 43.3 2.0 42 25-69 261-306 (352)
112 PF05290 Baculo_IE-1: Baculovi 74.5 2.5 5.4E-05 37.9 2.5 51 31-81 79-133 (140)
113 KOG1100 Predicted E3 ubiquitin 71.4 1.8 3.8E-05 41.2 0.9 38 35-79 161-199 (207)
114 KOG1815 Predicted E3 ubiquitin 71.0 2.6 5.6E-05 44.2 2.1 39 28-68 66-104 (444)
115 KOG0309 Conserved WD40 repeat- 70.4 2.9 6.4E-05 46.7 2.4 42 32-74 1028-1069(1081)
116 KOG3039 Uncharacterized conser 69.5 2.6 5.6E-05 41.5 1.6 34 32-68 43-76 (303)
117 KOG2807 RNA polymerase II tran 69.4 3.2 7E-05 42.2 2.3 58 19-76 316-374 (378)
118 KOG2068 MOT2 transcription fac 68.6 3.5 7.7E-05 41.8 2.4 49 33-81 250-299 (327)
119 KOG4718 Non-SMC (structural ma 68.4 2.5 5.4E-05 40.6 1.2 46 32-79 181-226 (235)
120 KOG3113 Uncharacterized conser 67.1 5.9 0.00013 39.1 3.5 77 5-83 68-161 (293)
121 PF14446 Prok-RING_1: Prokaryo 67.0 6.2 0.00013 30.1 2.9 34 31-64 4-38 (54)
122 KOG1829 Uncharacterized conser 62.5 3.1 6.8E-05 45.3 0.8 41 32-75 511-556 (580)
123 KOG1812 Predicted E3 ubiquitin 61.6 4 8.6E-05 42.3 1.3 42 33-75 307-351 (384)
124 KOG1609 Protein involved in mR 60.2 4.7 0.0001 39.1 1.5 49 32-80 78-134 (323)
125 KOG2066 Vacuolar assembly/sort 58.3 4.3 9.2E-05 45.5 0.9 50 26-76 778-831 (846)
126 KOG0824 Predicted E3 ubiquitin 57.9 3.3 7.1E-05 41.7 -0.1 49 31-81 104-152 (324)
127 PF14569 zf-UDP: Zinc-binding 54.5 14 0.0003 30.3 3.0 53 28-80 5-62 (80)
128 KOG2169 Zn-finger transcriptio 52.5 25 0.00055 38.8 5.6 57 33-96 307-372 (636)
129 KOG0802 E3 ubiquitin ligase [P 50.8 7.4 0.00016 41.9 1.2 46 31-83 478-523 (543)
130 PF07975 C1_4: TFIIH C1-like d 50.0 6.8 0.00015 29.5 0.5 41 35-75 2-49 (51)
131 PF04216 FdhE: Protein involve 48.5 3.5 7.6E-05 40.6 -1.6 47 30-77 170-219 (290)
132 PF07191 zinc-ribbons_6: zinc- 48.5 2.9 6.3E-05 33.5 -1.7 41 32-80 1-41 (70)
133 PLN02189 cellulose synthase 47.7 16 0.00034 42.5 3.2 53 28-80 30-87 (1040)
134 KOG3842 Adaptor protein Pellin 47.6 17 0.00036 37.2 3.0 52 30-81 339-415 (429)
135 KOG0269 WD40 repeat-containing 45.2 15 0.00032 41.3 2.4 43 34-77 781-825 (839)
136 KOG4218 Nuclear hormone recept 42.6 21 0.00046 36.8 2.9 66 27-98 10-93 (475)
137 PF13901 DUF4206: Domain of un 42.2 16 0.00036 34.3 2.0 40 32-76 152-196 (202)
138 PLN02638 cellulose synthase A 41.9 23 0.00049 41.4 3.3 50 31-80 16-70 (1079)
139 PLN02436 cellulose synthase A 41.6 22 0.00048 41.5 3.1 54 27-80 31-89 (1094)
140 KOG4185 Predicted E3 ubiquitin 41.3 4.2 9E-05 39.8 -2.3 49 30-78 205-265 (296)
141 TIGR00622 ssl1 transcription f 41.0 21 0.00045 31.1 2.2 45 32-76 55-110 (112)
142 KOG3005 GIY-YIG type nuclease 38.8 17 0.00037 36.2 1.5 49 33-81 183-244 (276)
143 PF04710 Pellino: Pellino; In 38.7 10 0.00022 39.6 0.0 51 31-81 327-402 (416)
144 PF06844 DUF1244: Protein of u 38.7 18 0.0004 28.7 1.4 13 56-68 11-23 (68)
145 KOG3799 Rab3 effector RIM1 and 37.2 9.7 0.00021 34.4 -0.4 29 30-66 63-92 (169)
146 KOG2789 Putative Zn-finger pro 36.3 15 0.00033 38.4 0.8 33 33-66 75-107 (482)
147 PLN02400 cellulose synthase 35.4 24 0.00053 41.2 2.3 54 27-80 31-89 (1085)
148 COG5627 MMS21 DNA repair prote 33.7 38 0.00081 33.3 2.9 67 31-99 188-258 (275)
149 PF06906 DUF1272: Protein of u 33.5 73 0.0016 24.6 3.8 47 34-82 7-54 (57)
150 smart00249 PHD PHD zinc finger 33.4 22 0.00048 23.9 1.0 31 34-64 1-31 (47)
151 PF01363 FYVE: FYVE zinc finge 32.7 16 0.00035 27.9 0.3 36 29-64 6-42 (69)
152 TIGR01562 FdhE formate dehydro 32.6 10 0.00022 38.3 -1.1 45 32-77 184-232 (305)
153 PF04710 Pellino: Pellino; In 31.7 16 0.00034 38.3 0.0 47 32-81 277-340 (416)
154 PRK03564 formate dehydrogenase 31.4 13 0.00029 37.5 -0.5 45 31-77 186-234 (309)
155 PLN02195 cellulose synthase A 30.4 50 0.0011 38.3 3.7 51 31-81 5-60 (977)
156 PF09397 Ftsk_gamma: Ftsk gamm 30.4 22 0.00048 27.9 0.7 24 312-335 24-48 (65)
157 smart00064 FYVE Protein presen 29.9 44 0.00095 25.4 2.3 37 30-66 8-45 (68)
158 KOG3337 Protein similar to pre 29.9 17 0.00037 34.2 -0.1 28 273-300 135-163 (201)
159 smart00132 LIM Zinc-binding do 28.7 47 0.001 21.5 2.0 36 35-79 2-37 (39)
160 PF05605 zf-Di19: Drought indu 28.7 29 0.00064 25.6 1.0 36 32-77 2-39 (54)
161 KOG2231 Predicted E3 ubiquitin 27.3 42 0.00092 37.4 2.4 43 34-79 2-51 (669)
162 KOG0956 PHD finger protein AF1 27.0 39 0.00084 37.9 2.0 26 51-76 44-69 (900)
163 PLN02915 cellulose synthase A 26.6 46 0.00099 38.9 2.5 49 32-80 15-68 (1044)
164 KOG1815 Predicted E3 ubiquitin 25.9 20 0.00043 37.6 -0.4 37 33-69 227-268 (444)
165 PF10497 zf-4CXXC_R1: Zinc-fin 25.4 83 0.0018 26.8 3.3 25 54-78 37-70 (105)
166 smart00843 Ftsk_gamma This dom 24.6 36 0.00077 26.7 0.9 24 312-335 23-47 (63)
167 PF02318 FYVE_2: FYVE-type zin 23.9 41 0.00089 28.9 1.2 46 31-77 53-102 (118)
168 KOG1356 Putative transcription 23.8 21 0.00046 40.5 -0.7 48 32-80 229-282 (889)
169 COG3813 Uncharacterized protei 23.6 91 0.002 25.4 3.0 48 35-84 8-56 (84)
170 PF15419 LNP1: Leukemia NUP98 23.3 64 0.0014 30.1 2.4 42 253-299 98-139 (177)
171 PF00628 PHD: PHD-finger; Int 22.9 29 0.00062 24.8 0.1 43 34-76 1-49 (51)
172 PF10146 zf-C4H2: Zinc finger- 22.9 64 0.0014 31.3 2.4 29 56-84 195-223 (230)
173 smart00647 IBR In Between Ring 21.9 17 0.00038 26.7 -1.3 32 34-65 20-58 (64)
174 KOG4451 Uncharacterized conser 21.9 64 0.0014 31.7 2.2 29 55-83 249-277 (286)
175 KOG2979 Protein involved in DN 21.5 55 0.0012 32.4 1.7 44 32-77 176-221 (262)
176 cd07153 Fur_like Ferric uptake 21.4 26 0.00057 29.1 -0.5 32 304-335 16-49 (116)
177 cd00065 FYVE FYVE domain; Zinc 20.9 68 0.0015 23.3 1.7 34 33-66 3-37 (57)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.27 E-value=1.6e-12 Score=92.85 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.5
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
++|+||++.|..++.+..++|+|.||..||..|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998777888899999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.5e-11 Score=119.09 Aligned_cols=49 Identities=35% Similarity=0.978 Sum_probs=44.5
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcCC-CCCCccccCCC
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~-sCPvCR~~l~~ 81 (385)
++|+||+|.|..++.+++|||+|.||..||..||.... .||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 49999999999999999999999999999999998874 59999986654
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.01 E-value=2.3e-10 Score=109.75 Aligned_cols=55 Identities=27% Similarity=0.783 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccccCCCC-----ceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 27 IQDSCDDACSICLEEFSESDP-----STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~-----~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.+...+.+|+||++.+.+... ..+++|+|.||..||.+|+..+.+||+||..+..
T Consensus 169 ~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 169 YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 344567899999998754221 2456899999999999999999999999998753
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.99 E-value=3.4e-10 Score=89.92 Aligned_cols=45 Identities=36% Similarity=1.006 Sum_probs=36.2
Q ss_pred CcccccccccccC----------CCCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 32 DDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 32 D~~CpICLe~f~~----------~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
++.|+||++.|.+ .-.+.+.+|+|.||..||..|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4569999999932 12345578999999999999999999999997
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=3.1e-10 Score=105.47 Aligned_cols=54 Identities=30% Similarity=0.728 Sum_probs=43.6
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----------------CCCCCCccccCCCCCc
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDA 84 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----------------s~sCPvCR~~l~~kd~ 84 (385)
+..++.+|+||++.+.+ +.+++|+|.||+.||..|+.. ...||+||..+...+.
T Consensus 14 ~~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 14 DSGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred cCCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 44557899999999843 677899999999999999852 2479999999876543
No 6
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.5e-10 Score=107.21 Aligned_cols=54 Identities=31% Similarity=0.733 Sum_probs=44.9
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC---CCCCCccccCCCCCc
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDA 84 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~~l~~kd~ 84 (385)
.+.....|.||||.-.+ ++++.|||.||+.||.+|++.+ +.||+|+..+..+..
T Consensus 43 ~~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 35568899999999744 7888999999999999999864 569999998876543
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=1.1e-09 Score=82.91 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=48.1
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHH
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~ellea 92 (385)
++.|+||++.+.+ +.+++|||.||..||..|+..+..||+|+..+...+...+..+..
T Consensus 1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence 4689999999943 567799999999999999998889999999998777666544433
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.3e-10 Score=109.47 Aligned_cols=53 Identities=32% Similarity=0.867 Sum_probs=46.2
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
..+.+..|.|||+.. ..+..++|||.||+.||.+|+.....||+||..+.+.+
T Consensus 235 i~~a~~kC~LCLe~~---~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENR---SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCC---CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 455678899999986 33788999999999999999999999999999887654
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=1.3e-09 Score=79.95 Aligned_cols=47 Identities=34% Similarity=0.822 Sum_probs=39.9
Q ss_pred CCcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
++..|.||++.+.+ +.+++|+|. ||..|+..|+.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46789999999744 788899999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.3e-09 Score=76.16 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.2
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvC 75 (385)
|+||++.+ .++..+++|||.||..||..|++.+..||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999998 4445789999999999999999998899998
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.82 E-value=2.7e-09 Score=76.31 Aligned_cols=38 Identities=32% Similarity=0.854 Sum_probs=29.2
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvC 75 (385)
|+||+++|.+ ++.++|||.||..||..|+... ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999944 7778999999999999999764 469988
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=4.2e-09 Score=107.66 Aligned_cols=60 Identities=25% Similarity=0.531 Sum_probs=48.6
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleav 93 (385)
.++.|+||++.|.. +++++|+|.||..||..|+.....||+|+..+....+..+.++..+
T Consensus 25 ~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 25 TSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred cccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 47899999999933 5678999999999999999988899999999876655555444433
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.7e-09 Score=106.04 Aligned_cols=53 Identities=30% Similarity=0.882 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCC----------CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSES----------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~----------d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
...|..|.||+|++... ..++.++|||.||.+|+.-|++++++||+||.++..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 45789999999995321 235778999999999999999999999999998554
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.4e-09 Score=97.15 Aligned_cols=55 Identities=31% Similarity=0.644 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
.+.-..|||||+.+...- +.-++|||.||..||...+.....||+|++.|..+++
T Consensus 128 ~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 344467999999995532 2447999999999999999999999999998887764
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.75 E-value=6.7e-09 Score=85.03 Aligned_cols=52 Identities=42% Similarity=1.013 Sum_probs=41.0
Q ss_pred CCccccccccccc----------CCCCceeeccCCcccHHHHHHHHhc---CCCCCCccccCCCC
Q 016675 31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (385)
Q Consensus 31 eD~~CpICLe~f~----------~~d~~~vl~CgH~FC~~CI~~WLq~---s~sCPvCR~~l~~k 82 (385)
.|+.|.||...|. ++-++....|+|.||.+||.+|+.. +..||+||+.+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 3778999988884 1223455689999999999999985 46899999987654
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.74 E-value=8e-09 Score=71.39 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=37.3
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccC
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l 79 (385)
.|+||++.+ .+...+++|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 445666679999999999999987 67899998754
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.71 E-value=8.3e-09 Score=97.71 Aligned_cols=62 Identities=24% Similarity=0.515 Sum_probs=46.4
Q ss_pred HhhhhccCCCCCCcccccccccccCC------CCceeeccCCcccHHHHHHHHhcC------CCCCCccccCCC
Q 016675 20 AAFVEGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISL 81 (385)
Q Consensus 20 ~a~ve~~iqdeeD~~CpICLe~f~~~------d~~~vl~CgH~FC~~CI~~WLq~s------~sCPvCR~~l~~ 81 (385)
...-+...+.+.|.+|+||++..... ....+.+|+|.||..||..|...+ ..||+||..+..
T Consensus 158 l~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 158 LDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 33345555677799999999986321 124567999999999999999753 459999998764
No 18
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.4e-09 Score=101.22 Aligned_cols=50 Identities=36% Similarity=0.878 Sum_probs=44.8
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvCR~~l~~ 81 (385)
-.+|.||++.|...+...+|||.|.||..|+..|+. -+..||+||..+++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 368999999998778889999999999999999998 56789999998864
No 19
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.3e-09 Score=105.73 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=41.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~k 82 (385)
++.|+|||+++ ...++...|.|.||..||..-+.. .+.||.||+.+..+
T Consensus 43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 67899999999 455777899999999999777764 67899999988654
No 20
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.64 E-value=1.4e-08 Score=101.00 Aligned_cols=62 Identities=26% Similarity=0.628 Sum_probs=53.8
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
-+.|.||.++|.. +.+++|+|.||.-||+.+|..+..||.|+..+.+.++..+.+++.+.+.
T Consensus 23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S 84 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKS 84 (442)
T ss_pred HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHH
Confidence 5789999999955 7888999999999999999999999999999998888877776655443
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=2e-08 Score=70.27 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=33.2
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHh--cCCCCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq--~s~sCPvC 75 (385)
|+||++.+. ++..+++|+|.||..||..|+. ....||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999983 3345899999999999999998 45679998
No 22
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.58 E-value=5.9e-08 Score=76.82 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=46.9
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCCcchHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVE 94 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd~~s~elleave 94 (385)
+++.|+||.+.|.+ +.+++|||.|+..||..|+.. ...||+|+..+...++.++..+....
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I 64 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAI 64 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHH
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHH
Confidence 47899999999955 677899999999999999998 78999999999998888876655443
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=4.3e-08 Score=70.32 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.3
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
.|+||++.|.....+.+++|+|.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567889999999999999999866678999975
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.1e-08 Score=102.87 Aligned_cols=53 Identities=40% Similarity=0.751 Sum_probs=43.8
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-----CCCCCccccCCCCCcchH
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATSQ 87 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-----~sCPvCR~~l~~kd~~s~ 87 (385)
+..|||||+...- +..+.|||+||+.||..+|... ..||+||..|..+++.+.
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 7899999998733 5566799999999999988654 469999999999877643
No 25
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7.2e-08 Score=102.27 Aligned_cols=52 Identities=33% Similarity=0.756 Sum_probs=43.7
Q ss_pred CCCcccccccccccCCCC--ceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 30 SCDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~--~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..+..|+||+|.+..... ++.++|+|.||..|+..|+++..+||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 348899999999844322 6778999999999999999999999999995543
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.44 E-value=1.8e-07 Score=62.27 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=32.7
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvC 75 (385)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999985 3477789999999999999998 56679987
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-07 Score=91.96 Aligned_cols=51 Identities=35% Similarity=0.803 Sum_probs=43.4
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHH-HHhcCCC-CCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~-WLq~s~s-CPvCR~~l~~kd 83 (385)
+.|..|.||++.... +..++|+|.||+.||.. |-.++.. ||+||+....+.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 458889999999733 67789999999999999 8887776 999999887764
No 28
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.2e-07 Score=85.57 Aligned_cols=45 Identities=33% Similarity=0.785 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
+++..|+||++.|.. + .+++|+|.||..||..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~--p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE--P-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc--C-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 458899999999943 4 88899999999999999985568999995
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.25 E-value=6.3e-07 Score=64.66 Aligned_cols=38 Identities=42% Similarity=0.960 Sum_probs=23.0
Q ss_pred ccccccccc-CCCCceeeccCCcccHHHHHHHHhcC----CCCC
Q 016675 35 CSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRS----SQCP 73 (385)
Q Consensus 35 CpICLe~f~-~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCP 73 (385)
|+||++ |. +.+++++|+|||.||.+||..|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 64 34567889999999999999999853 3466
No 30
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.24 E-value=5.6e-07 Score=72.85 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.6
Q ss_pred ceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 48 ~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
+..-.|.|.||.+||.+||..+..||+|++.+...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 344689999999999999999999999999887654
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.21 E-value=6.7e-07 Score=87.65 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=42.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
-+.|-||-+.|.. +..++|+|.||.-||..+|..+..||+||.....
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 5689999999955 6778999999999999999999999999987665
No 32
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.18 E-value=6.4e-07 Score=69.82 Aligned_cols=58 Identities=28% Similarity=0.693 Sum_probs=29.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHH
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleav 93 (385)
-+.|++|.+.+ +.++.+..|.|.||..||...+. ..||+|..+.-.+|...+..+..+
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence 45799999999 56677889999999999977554 359999999988888777666543
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.4e-06 Score=86.48 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=40.0
Q ss_pred Cccccccccc--ccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCccccCCCCCcchH
Q 016675 32 DDACSICLEE--FSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDATSQ 87 (385)
Q Consensus 32 D~~CpICLe~--f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvCR~~l~~kd~~s~ 87 (385)
+..||||... +...-...+.+|||.||..||..++. ....||.|+..+....+..+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 5689999995 32211122337999999999999664 45689999998887665433
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-06 Score=70.70 Aligned_cols=51 Identities=39% Similarity=0.931 Sum_probs=37.9
Q ss_pred Cccccccccccc----------CCCCceeeccCCcccHHHHHHHHhc---CCCCCCccccCCCC
Q 016675 32 DDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~----------~~d~~~vl~CgH~FC~~CI~~WLq~---s~sCPvCR~~l~~k 82 (385)
+.+|-||.-.|. ++-|...-.|.|.||..||.+|+.. +..||+||+.+..+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 447888877763 2223444589999999999999975 45799999987643
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=8.2e-06 Score=79.43 Aligned_cols=54 Identities=31% Similarity=0.789 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCCC-------CceeeccCCcccHHHHHHHHh--cCCCCCCccccCCCC
Q 016675 29 DSCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-------~~~vl~CgH~FC~~CI~~WLq--~s~sCPvCR~~l~~k 82 (385)
-.+|..|.||-..+.... ....+.|+|.||..||+-|+. ++++||.|++.+..+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 446889999998874322 356689999999999999986 457899999877643
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2.1e-05 Score=79.53 Aligned_cols=58 Identities=34% Similarity=0.823 Sum_probs=43.9
Q ss_pred ccCCCCCCcccccccccccCCC-----CceeeccCCcccHHHHHHHHh--c-----CCCCCCccccCCCC
Q 016675 25 GGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (385)
Q Consensus 25 ~~iqdeeD~~CpICLe~f~~~d-----~~~vl~CgH~FC~~CI~~WLq--~-----s~sCPvCR~~l~~k 82 (385)
..++...|.+|.||++.+.... -.++++|.|.||..||..|-. + .+.||.||......
T Consensus 154 ~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 154 FALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 3446677999999999885432 123467999999999999984 3 36799999876543
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.8e-05 Score=82.36 Aligned_cols=50 Identities=32% Similarity=0.828 Sum_probs=39.1
Q ss_pred CcccccccccccCC--------------CCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCC
Q 016675 32 DDACSICLEEFSES--------------DPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~--------------d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~ 81 (385)
...|+||+..+... ....++||.|.||..|+..|... +-.||+||.+++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 55799999886311 11345799999999999999995 4589999998864
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.5e-05 Score=67.59 Aligned_cols=51 Identities=25% Similarity=0.694 Sum_probs=39.1
Q ss_pred CCcccccccccccC------------CCC--ceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSE------------SDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~------------~d~--~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.-+.|+||..-+++ .+. +..-.|.|.||..||.+||.....||+|.+.+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 45689999876531 111 3346899999999999999999999999877654
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.61 E-value=8.3e-06 Score=64.43 Aligned_cols=50 Identities=38% Similarity=0.842 Sum_probs=24.3
Q ss_pred Cccccccccccc-CCCCcee----eccCCcccHHHHHHHHhc---C--------CCCCCccccCCC
Q 016675 32 DDACSICLEEFS-ESDPSTV----TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~-~~d~~~v----l~CgH~FC~~CI~~WLq~---s--------~sCPvCR~~l~~ 81 (385)
+..|.||+..+. .+..+.+ ..|+..||..||.+|+.. . ..||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999999875 2222222 278999999999999963 1 249999988764
No 40
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.56 E-value=2e-05 Score=78.45 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=41.9
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
-.+|.+|-.+| -+.-+++.|.|.||+.||..++.....||+|...+..
T Consensus 15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 56899999999 4456778999999999999999999999999876654
No 41
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.55 E-value=7.1e-05 Score=55.30 Aligned_cols=42 Identities=29% Similarity=0.786 Sum_probs=32.4
Q ss_pred ccccccccccCCCCceeeccC-----CcccHHHHHHHHhcC--CCCCCcc
Q 016675 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~Cg-----H~FC~~CI~~WLq~s--~sCPvCR 76 (385)
.|-||++.. +.+.+.+.||. |.||..||..|+..+ ..||+|.
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999833 33445677885 889999999999764 4899994
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=3.8e-05 Score=83.36 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=42.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCCc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd~ 84 (385)
-+.|++|-.-+.+ ..++.|+|.||..|+...+.. +..||.|...|...|.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 5789999988755 677899999999999998875 5689999999887764
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.8e-05 Score=58.27 Aligned_cols=48 Identities=31% Similarity=0.702 Sum_probs=37.3
Q ss_pred CCCcccccccccccCCCCceeeccCC-cccHHHHHHHHh-cCCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH-~FC~~CI~~WLq-~s~sCPvCR~~l~ 80 (385)
+.+++|.||++-..+ ..+.-|+| -.|..|-.+.+. .+..||+||.++.
T Consensus 5 ~~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 345899999998744 45568999 578999766555 6889999999864
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.45 E-value=2.7e-05 Score=84.60 Aligned_cols=55 Identities=20% Similarity=0.486 Sum_probs=45.4
Q ss_pred CCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
++......|+||+..+.++.......|.|.||..||..|...-.+||+||..|..
T Consensus 118 ~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 118 VQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 3445567899999998665445557899999999999999999999999987754
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.40 E-value=5.5e-05 Score=78.06 Aligned_cols=47 Identities=34% Similarity=0.846 Sum_probs=36.8
Q ss_pred CcccccccccccCCCC-ceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~-~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
--+|||||+-+..... +..+.|.|.||..|+..|.. .+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 4589999999843222 24468999999999999975 58999998655
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.9e-05 Score=73.65 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=39.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~k 82 (385)
+.+|+||+... ..++.+.|+|.||.-||.--.... ..|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56899999886 446788999999999998766654 5699999998763
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00011 Score=75.77 Aligned_cols=56 Identities=25% Similarity=0.644 Sum_probs=46.8
Q ss_pred hhccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 23 ve~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..++.+...+..|.||+..| .+++.++|||.||..||.+-+.....||.||..+..
T Consensus 75 ~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 75 LSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 44444556799999999998 337777999999999999988888899999999875
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00013 Score=73.55 Aligned_cols=48 Identities=31% Similarity=0.756 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCCceeeccCC-cccHHHHHHHHhcCCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH-~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+.-.+|.||+....+ ..+|||.| -.|..|-...--.+..||+||+++.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 346789999999855 68899999 5799998887777889999999875
No 49
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.32 E-value=6.7e-05 Score=82.96 Aligned_cols=52 Identities=31% Similarity=0.835 Sum_probs=39.6
Q ss_pred CCCCccccccccccc--CCCC--ceeeccCCcccHHHHHHHHhcC--CCCCCccccCC
Q 016675 29 DSCDDACSICLEEFS--ESDP--STVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPIS 80 (385)
Q Consensus 29 deeD~~CpICLe~f~--~~d~--~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~~l~ 80 (385)
-+.-.+|+||+..+. +..- -+...|+|.||..|+..|...+ .+||+||..+.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 444678999998873 1111 2446799999999999999874 57999998765
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.24 E-value=0.00037 Score=71.28 Aligned_cols=49 Identities=24% Similarity=0.671 Sum_probs=40.4
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhc--CCCCCCccccCCCCCc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--s~sCPvCR~~l~~kd~ 84 (385)
.-|-||-+.= ..+.+-+|||..|..|+..|... ...||.||..|.....
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 3599999874 34788899999999999999854 5789999999887553
No 51
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00022 Score=72.58 Aligned_cols=48 Identities=25% Similarity=0.796 Sum_probs=34.4
Q ss_pred cccccccccccCCCCc-eeeccCCcccHHHHHHHHhcC---CCCCCccccCC
Q 016675 33 DACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPIS 80 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~~l~ 80 (385)
-.|.||.+.+...... .+-.|||.||..|+..|+..- ..||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 3799996665332223 233599999999999999863 47999984443
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.08 E-value=0.00015 Score=71.70 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=42.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc-----------------------CCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-----------------------s~sCPvCR~~l~~k 82 (385)
...|.|||.-|.+++..+++.|.|.||..|+.++|.. ...||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 5679999999988777899999999999999887642 12599999988653
No 53
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00038 Score=71.28 Aligned_cols=54 Identities=28% Similarity=0.798 Sum_probs=40.2
Q ss_pred CCcccccccccccC-CC-CceeeccCCcccHHHHHHHHhc--CCCCCCccccCCCCCc
Q 016675 31 CDDACSICLEEFSE-SD-PSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDA 84 (385)
Q Consensus 31 eD~~CpICLe~f~~-~d-~~~vl~CgH~FC~~CI~~WLq~--s~sCPvCR~~l~~kd~ 84 (385)
+-.+||||++.+.. ++ .+..+.|+|.|..+||+.|+-+ ...||.|...-...+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i 60 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQI 60 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHH
Confidence 45789999998743 22 3455899999999999999963 2479999765544443
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00035 Score=68.97 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=49.8
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
-+.|-||...|.. ++++.|+|.||..|...-++....|++|.+.+........+|+..+...
T Consensus 241 Pf~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~~k 302 (313)
T KOG1813|consen 241 PFKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLKLK 302 (313)
T ss_pred Ccccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHHhh
Confidence 3459999999944 6788999999999999999999999999888876665566665555443
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.02 E-value=0.00028 Score=72.47 Aligned_cols=54 Identities=28% Similarity=0.698 Sum_probs=44.4
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~ 85 (385)
+++..|+||...+.+ +...+.|+|.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccC--CCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 457899999999944 343369999999999999999999999998887665443
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.01 E-value=0.00029 Score=53.72 Aligned_cols=42 Identities=36% Similarity=0.801 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc--CCCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--s~sCPv 74 (385)
-...|||.+..| .+|++-..|+|.|....|.+|+.. ...||+
T Consensus 10 ~~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 368999999999 566676899999999999999944 446998
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0004 Score=67.97 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc--CCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--s~sCPvCR~~l~ 80 (385)
..+.+|++|-+.. ..|.+..+|+|.||..||..-+.. ..+||.|-....
T Consensus 237 t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4488999999987 445666789999999999887664 478999977654
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00048 Score=69.56 Aligned_cols=54 Identities=20% Similarity=0.474 Sum_probs=45.4
Q ss_pred ccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 25 ~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
+.+-+.+|+.|+||+.-... ....||+|.-|..||.+.+...+.|..|+..+..
T Consensus 415 ~~lp~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCCcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 34457889999999986522 5667999999999999999999999999887664
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.85 E-value=0.00074 Score=63.59 Aligned_cols=51 Identities=24% Similarity=0.592 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
+.-.+.|-||-..|.. ++++.|+|.||..|...-++....|.+|-+.....
T Consensus 193 e~IPF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G~ 243 (259)
T COG5152 193 EKIPFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATYGR 243 (259)
T ss_pred CCCceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhccc
Confidence 3335689999999944 78889999999999999888889999997765543
No 60
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0028 Score=60.79 Aligned_cols=61 Identities=28% Similarity=0.533 Sum_probs=45.9
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc--------CCCCCCccccCCCCCcchHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATSQELLEA 92 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--------s~sCPvCR~~l~~kd~~s~ellea 92 (385)
.+-.|..|--.+..++... +.|.|.||++|+.+|-.. ..+||.|...|...-.....+.++
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~a 117 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEA 117 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHH
Confidence 3567999999987776544 589999999999999864 357999999887654443333333
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.41 E-value=0.0025 Score=73.35 Aligned_cols=53 Identities=34% Similarity=0.737 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----------CCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----------~sCPvCR~~l~~ 81 (385)
.+.|+.|-||+-+-....|.+.|.|+|.||++|.+..|+.. -.||+|+.+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34578999999875555667889999999999998777653 259999998875
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.40 E-value=0.0016 Score=68.72 Aligned_cols=53 Identities=23% Similarity=0.649 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-----CCCCCCccccCCCCC
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLKD 83 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-----s~sCPvCR~~l~~kd 83 (385)
.+..+.+|.+|-+.-.+ .....|.|.||.-||.+++.. ..+||+|...+....
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 34457899999998633 677899999999999999864 458999988877653
No 63
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.91 E-value=0.0025 Score=65.18 Aligned_cols=50 Identities=26% Similarity=0.640 Sum_probs=39.9
Q ss_pred CCCCcccccccccccCCC-CceeeccCCcccHHHHHHHHhcC--CCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~~ 78 (385)
.+-++.|..|-+.+..++ ....++|.|+||..|+.+.+.++ .+||.||+.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 345788999999985433 34568999999999999999765 579999853
No 64
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.88 E-value=0.0069 Score=60.28 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=37.7
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCccc-cCCCCC
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQ-PISLKD 83 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvCR~-~l~~kd 83 (385)
+.|+.|-..+ .+++....|+|.||..||...|. ..+.||.|.. .+....
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~ 325 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDG 325 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhc
Confidence 8899999998 55566668999999999987665 5678999944 444433
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.011 Score=57.53 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=45.7
Q ss_pred CCcccccccccccCCCCcee-eccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 31 CDDACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~v-l~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
.-..||||.+.+.+.-+..+ -+|+|.||..|...++.....||+|-.++..+|.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 45689999999976555544 5999999999999999999999999999887764
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.33 E-value=0.013 Score=59.35 Aligned_cols=53 Identities=21% Similarity=0.448 Sum_probs=42.4
Q ss_pred hccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHH--HhcCCCCCCccccC
Q 016675 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPI 79 (385)
Q Consensus 24 e~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~W--Lq~s~sCPvCR~~l 79 (385)
....+|+++..|.||.+.+ ....++||+|..|.-|-.+. |...+.||+||..+
T Consensus 53 SaddtDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 53 SADDTDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3344788889999999987 33678999999999997543 55688999999765
No 67
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.23 E-value=0.016 Score=42.92 Aligned_cols=44 Identities=27% Similarity=0.703 Sum_probs=22.1
Q ss_pred cccccccccCCCCceee--ccCCcccHHHHHHHHh-cCCCCCCccccC
Q 016675 35 CSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl--~CgH~FC~~CI~~WLq-~s~sCPvCR~~l 79 (385)
|++|.+.+...+. .++ +|++.+|..|+..-+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999833332 233 6789999999988886 478999999864
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.018 Score=59.38 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=37.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC--------CCCCCcccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--------SQCPMCWQP 78 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s--------~sCPvCR~~ 78 (385)
-..|.||++...-......++|.|.||+.|+..+.... -.||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 45799999998665678889999999999999987532 357776544
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.01 Score=60.11 Aligned_cols=47 Identities=34% Similarity=0.675 Sum_probs=34.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
....+-|.||++.+.+ ...++|||.-| |.... +.-..||+||+.+..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 3446789999999844 67789999977 76443 333559999987653
No 70
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.0042 Score=61.52 Aligned_cols=42 Identities=26% Similarity=0.659 Sum_probs=33.1
Q ss_pred CcccccccccccCCCCceeeccCC-cccHHHHHHHHhcCCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH-~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+.-|.||++...+ ..+|+||| .-|.+|-... ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6779999999844 67889999 5688886443 48999998654
No 71
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.021 Score=53.17 Aligned_cols=53 Identities=30% Similarity=0.694 Sum_probs=38.3
Q ss_pred CCCcccccccccccCCCCc----eeeccCCcccHHHHHHHHhcC-----------CCCCCccccCCCC
Q 016675 30 SCDDACSICLEEFSESDPS----TVTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK 82 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~----~vl~CgH~FC~~CI~~WLq~s-----------~sCPvCR~~l~~k 82 (385)
++-..|-||+.+-.++..+ --..|+..||.-|+..||..- ..||.|..++..+
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 3456688998765443322 225899999999999999741 3599999888655
No 72
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.94 E-value=0.017 Score=58.45 Aligned_cols=55 Identities=20% Similarity=0.517 Sum_probs=37.1
Q ss_pred CCCCcccccccccccCCCCcee-eccCCcccHHHHHHHHhc-CCCCCCccccCCCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v-l~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd 83 (385)
+++|+.||.|++.+.+.+.-.. -+||-..|.-|+.-.-+. +.+||-||..+....
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3456669999999865443222 368877788786544333 578999998776543
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.023 Score=57.21 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=41.7
Q ss_pred hccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 24 e~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
++.+.......||||+... .++..+.--|-.||..||..++..++.||+--.+..
T Consensus 292 e~e~l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccCCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 3444555678899999986 333344455999999999999999999998766554
No 74
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.74 E-value=0.01 Score=57.19 Aligned_cols=45 Identities=31% Similarity=0.721 Sum_probs=33.8
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.|-.|..--. .++..++.|.|+||..|...- ....||+|++.+..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeee
Confidence 4777776553 677889999999999996432 22389999998754
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.63 E-value=0.031 Score=54.36 Aligned_cols=54 Identities=22% Similarity=0.473 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCCCC-ceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 29 DSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~-~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
......|||+...|..... +.+.+|||.|+..||.+.- ....||+|-.+|...|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEED 164 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCC
Confidence 3557789999999843323 3445999999999999874 4567999999888654
No 76
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.036 Score=54.19 Aligned_cols=49 Identities=27% Similarity=0.641 Sum_probs=39.0
Q ss_pred cccccccccccCC---CCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCC
Q 016675 33 DACSICLEEFSES---DPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL 81 (385)
Q Consensus 33 ~~CpICLe~f~~~---d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~ 81 (385)
..|-||-++|... ..+++|.|+|.||..|+...+... -.||.||.....
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEI 56 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccC
Confidence 5799999999654 236788999999999998777654 469999998643
No 77
>PHA03096 p28-like protein; Provisional
Probab=94.31 E-value=0.025 Score=56.13 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=32.5
Q ss_pred cccccccccccCC-----CCceeeccCCcccHHHHHHHHhcC---CCCCCccc
Q 016675 33 DACSICLEEFSES-----DPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (385)
Q Consensus 33 ~~CpICLe~f~~~-----d~~~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~ 77 (385)
..|.||++..... .-..+..|.|.||..||..|-... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999986432 223556899999999999998653 34555544
No 78
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.82 E-value=0.031 Score=49.77 Aligned_cols=45 Identities=20% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCCceeeccC------CcccHHHHHHHHhcCCCCCCc
Q 016675 31 CDDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~Cg------H~FC~~CI~~WLq~s~sCPvC 75 (385)
...+|.||++.+...+-++.+.|+ |.||..|+.+|-.....=|.=
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfn 75 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFN 75 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcc
Confidence 367899999998663345555665 899999999995444443433
No 79
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.62 E-value=0.028 Score=41.70 Aligned_cols=44 Identities=30% Similarity=0.705 Sum_probs=26.1
Q ss_pred ccccccccccCCCCceeeccC-CcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 34 ACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~Cg-H~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
.|--|+-.. -.+..|. |..|..|+...+..+..||+|+.+++.+
T Consensus 4 nCKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 466677543 2345786 9999999999999999999999988753
No 80
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.21 E-value=0.033 Score=45.75 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=27.2
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHH
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~ 63 (385)
-..+..|+||-..+.. ....+.||+|.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3447789999999955 445668999999999974
No 81
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.88 E-value=0.03 Score=64.53 Aligned_cols=44 Identities=32% Similarity=0.713 Sum_probs=37.6
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCcccc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~ 78 (385)
..|.||++.+.. ...+..|+|.||..|+..|+..+..||+|+..
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 489999999953 24556899999999999999999999999743
No 82
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.60 E-value=0.059 Score=59.94 Aligned_cols=46 Identities=37% Similarity=0.925 Sum_probs=35.2
Q ss_pred CcccccccccccCCCCc-eeeccCCcccHHHHHHHHhcC-------CCCCCccc
Q 016675 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~WLq~s-------~sCPvCR~ 77 (385)
-.+|.||++.+...+++ .-..|.|+||+.||..|-... -.||.|..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 56899999998654433 225689999999999998642 25999973
No 83
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.37 E-value=0.084 Score=52.26 Aligned_cols=52 Identities=29% Similarity=0.523 Sum_probs=41.2
Q ss_pred CCCCcccccccccccCC-CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
...+..||||.+.+... ..+.+++|+|..|..|+.+.......||+|.+ +..
T Consensus 155 ~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 155 RSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred hcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 33455699999986543 34677899999999999999888899999987 443
No 84
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.14 Score=52.86 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC---CCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~ 77 (385)
...-+.|||=.+.-.+.+||..+.|||..+++-|.+..... ..||.|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 34467899988888788899999999999999999987754 46999944
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.82 E-value=0.069 Score=58.82 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=38.0
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcC--CCCCCccccCCCCC
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~~l~~kd 83 (385)
..|.||++ . +.+.++.|+|.||..|+...+... ..||.||..+..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 3 457778999999999999888653 36999988776543
No 86
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=91.76 E-value=0.1 Score=38.14 Aligned_cols=40 Identities=30% Similarity=0.917 Sum_probs=26.4
Q ss_pred cccccccccCCCCceeeccC-----CcccHHHHHHHHhc--CCCCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~Cg-----H~FC~~CI~~WLq~--s~sCPvC 75 (385)
|-||++.-.+.. +.+.||. ...|..||..|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999865433 4556775 26799999999984 4569887
No 87
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.49 E-value=0.11 Score=54.23 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=29.4
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq 67 (385)
++++.|+||...|.+ +++++|+|..|..|...-+.
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhcc
Confidence 568999999999944 78889999999999876544
No 88
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.077 Score=53.23 Aligned_cols=42 Identities=26% Similarity=0.626 Sum_probs=28.7
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccC
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l 79 (385)
.|--|--.+.. .-++.+|+|.||++|... ..-+.||.|-..+
T Consensus 92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 46666554422 346679999999999643 3357899996543
No 89
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.068 Score=49.20 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=27.0
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccH
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHL 59 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~ 59 (385)
..+..+|.||||++..++.+..|||..+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3456789999999999998999999999986
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=0.11 Score=57.86 Aligned_cols=41 Identities=27% Similarity=0.706 Sum_probs=33.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
...|.+|--.+ +-|.+...|+|.||.+|+. .....||.|+.
T Consensus 840 ~skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccch
Confidence 35899999888 4455667999999999998 45578999976
No 91
>PHA02862 5L protein; Provisional
Probab=91.03 E-value=0.18 Score=45.54 Aligned_cols=46 Identities=26% Similarity=0.665 Sum_probs=34.6
Q ss_pred CcccccccccccCCCCceeeccC-----CcccHHHHHHHHhcC--CCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~Cg-----H~FC~~CI~~WLq~s--~sCPvCR~~l~~ 81 (385)
++.|=||++.-.+ . .-||. ...|..|+.+|+..+ ..|++|+.++..
T Consensus 2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999998522 1 34664 578999999999754 579999987754
No 92
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=90.55 E-value=0.17 Score=51.84 Aligned_cols=31 Identities=26% Similarity=0.815 Sum_probs=24.4
Q ss_pred cCCcccHHHHHHHHhcC-------------CCCCCccccCCCCC
Q 016675 53 CKHEFHLQCVLEWCQRS-------------SQCPMCWQPISLKD 83 (385)
Q Consensus 53 CgH~FC~~CI~~WLq~s-------------~sCPvCR~~l~~kd 83 (385)
|....|..|+-+|+..+ ..||+||+.+...|
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 45667999999998542 35999999998765
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.49 E-value=0.13 Score=36.98 Aligned_cols=41 Identities=24% Similarity=0.717 Sum_probs=22.6
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHhcCC--CCCCc
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~--sCPvC 75 (385)
|.+|.+++..+..-....|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888875542222236888999999999998755 79988
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=89.78 E-value=0.3 Score=44.77 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=35.1
Q ss_pred CCCcccccccccccCCCCceeeccCC-----cccHHHHHHHHhcC--CCCCCccccCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISL 81 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH-----~FC~~CI~~WLq~s--~sCPvCR~~l~~ 81 (385)
..+..|=||.+...+ -..||.. ..|..|+.+|+..+ ..|++|..++..
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 347789999988522 1246654 55999999999864 579999887653
No 95
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.23 E-value=0.48 Score=43.43 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCCceeecc------------CC-cccHHHHHHHHhc-----------------------------
Q 016675 31 CDDACSICLEEFSESDPSTVTSC------------KH-EFHLQCVLEWCQR----------------------------- 68 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~C------------gH-~FC~~CI~~WLq~----------------------------- 68 (385)
+|.+||||||.. .+ .++|-| .. .-|..||.++...
T Consensus 1 ed~~CpICme~P--HN-AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEHP--HN-AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccCC--Cc-eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 477999999986 32 333333 32 2356788887542
Q ss_pred --CCCCCCccccCCCCC
Q 016675 69 --SSQCPMCWQPISLKD 83 (385)
Q Consensus 69 --s~sCPvCR~~l~~kd 83 (385)
...||+||..+....
T Consensus 78 ~~~L~CPLCRG~V~GWt 94 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWT 94 (162)
T ss_pred cccccCccccCceeceE
Confidence 124999999887653
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.20 E-value=0.27 Score=37.49 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=33.3
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
+..|-.|...- ....+++|+|..|..|+.- .+-+-||.|-.++...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 44677776653 3357789999999999643 23457999988876544
No 97
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.93 E-value=0.22 Score=54.65 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=37.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc---CCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~---s~sCPvCR~~l~~k 82 (385)
+.+|+||+..+.. ++.+.|.|.||..|+..-+.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 7899999999844 467899999999998755543 45799998666543
No 98
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.75 E-value=0.47 Score=47.58 Aligned_cols=45 Identities=29% Similarity=0.615 Sum_probs=34.2
Q ss_pred CCCCcccccccccccCCCCceeecc--CCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~C--gH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+-+=++||||.+.+.. ++. .| ||..|..|-. .....||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~---Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSP---PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcc---cce-ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3346789999999833 433 67 6999999964 34578999999887
No 99
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=84.55 E-value=0.57 Score=52.19 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=35.7
Q ss_pred cCCCCCCcccccccccccCC-CCc---eeeccCCcccHHHHHHHHhc------CCCCCCccccC
Q 016675 26 GIQDSCDDACSICLEEFSES-DPS---TVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~-d~~---~vl~CgH~FC~~CI~~WLq~------s~sCPvCR~~l 79 (385)
.++-...++|.||+-.+.+. +.. .+-.|.|.||..||..|..+ +-.|++|..-|
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 33444567888888887541 112 22359999999999999875 23477775543
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.42 Score=49.38 Aligned_cols=37 Identities=30% Similarity=0.652 Sum_probs=27.2
Q ss_pred Cccccccc-ccccCCCCceeeccCCcccHHHHHHHHhc
Q 016675 32 DDACSICL-EEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (385)
Q Consensus 32 D~~CpICL-e~f~~~d~~~vl~CgH~FC~~CI~~WLq~ 68 (385)
..+|.||+ +.....+-..+..|+|.||..|+.+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 56899999 44322222235789999999999998874
No 101
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.04 E-value=0.086 Score=54.26 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=42.1
Q ss_pred CcccccccccccCC-CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
...|.||.+.+... +....+.|+|.+|..||..|+.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45799999998543 3455678999999999999999988999999887653
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.91 E-value=0.77 Score=51.36 Aligned_cols=55 Identities=29% Similarity=0.671 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccccCCCCceeeccCC-----cccHHHHHHHHhcC--CCCCCccccCCCC
Q 016675 27 IQDSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~~~vl~CgH-----~FC~~CI~~WLq~s--~sCPvCR~~l~~k 82 (385)
-.++++..|-||.-+=..+++ -.-||++ ..|..|+.+|+..+ ..|-+|..++..+
T Consensus 7 ~mN~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 7 PMNEDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCCccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 345667899999987544444 3447764 57999999999865 4699999877553
No 103
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=83.47 E-value=0.42 Score=46.64 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=34.8
Q ss_pred CCCCcccccccccccCCCCcee---eccCCcccHHHHHHHHhcC-CCCC--CccccC
Q 016675 29 DSCDDACSICLEEFSESDPSTV---TSCKHEFHLQCVLEWCQRS-SQCP--MCWQPI 79 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v---l~CgH~FC~~CI~~WLq~s-~sCP--vCR~~l 79 (385)
+..|..||||..+---.-.+.+ ..|-|..|..|+.+.+... ..|| -|-+.+
T Consensus 7 ~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3457799999975311111222 2499999999999988764 5799 785544
No 104
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.98 E-value=0.69 Score=52.06 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHh
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq 67 (385)
-+-++.|.+|...+.. .+-.+.+|+|.||..||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 4457789999998755 4667789999999999987753
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.94 E-value=1.4 Score=43.94 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=34.6
Q ss_pred ccccccccc--cCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCC
Q 016675 34 ACSICLEEF--SESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (385)
Q Consensus 34 ~CpICLe~f--~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd 83 (385)
.||+|.... ...-...+-+|+|..|..|+...+.. ...||.|-..+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 599998642 11111233499999999999888765 568999977665433
No 106
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.17 E-value=0.84 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=24.9
Q ss_pred cCCcccHHHHHHHHhc-------------CCCCCCccccCCCCCc
Q 016675 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA 84 (385)
Q Consensus 53 CgH~FC~~CI~~WLq~-------------s~sCPvCR~~l~~kd~ 84 (385)
|....|..|+-+|+.. +-+||+||+.+...|.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5667889999988743 3579999999887653
No 107
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.67 E-value=1.3 Score=43.74 Aligned_cols=55 Identities=20% Similarity=0.524 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCCCc-eeeccC-----CcccHHHHHHHHhcC--------CCCCCccccCCCCCc
Q 016675 30 SCDDACSICLEEFSESDPS-TVTSCK-----HEFHLQCVLEWCQRS--------SQCPMCWQPISLKDA 84 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~-~vl~Cg-----H~FC~~CI~~WLq~s--------~sCPvCR~~l~~kd~ 84 (385)
+.|..|-||+..=++.... -+-||. |..|..||..|+..+ ..||-|+......-+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P 86 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFP 86 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecc
Confidence 4477899999875432221 234664 889999999999653 259999887654433
No 108
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=79.37 E-value=1.8 Score=32.04 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=22.1
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhc---C--CCCCCcccc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---S--SQCPMCWQP 78 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~---s--~sCPvCR~~ 78 (385)
+.|||....+ ..|++...|.|.-|++ +..|+.. . -.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799999888 4566778999987755 3455542 2 369999763
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.19 E-value=1.5 Score=44.34 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=38.7
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc---CCCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~---s~sCPvCR~ 77 (385)
-..-++||+--+.-.+.++|..+.|+|..-+.-+....+. .+.||.|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3445789988877777788999999999999998887664 356999943
No 110
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.84 E-value=0.94 Score=49.57 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=29.6
Q ss_pred CcccccccccccCC-CCceeeccCCcccHHHHHHHHhcCCCCC
Q 016675 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCP 73 (385)
Q Consensus 32 D~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~~WLq~s~sCP 73 (385)
-+.|+||+..|... -.+..+-|+|..|.+|+.... +.+||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 35799998776432 345668999999999987654 35677
No 111
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.56 E-value=1.8 Score=43.33 Aligned_cols=42 Identities=24% Similarity=0.608 Sum_probs=31.7
Q ss_pred ccCCCCCCcccccccccccCCCCceeecc----CCcccHHHHHHHHhcC
Q 016675 25 GGIQDSCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS 69 (385)
Q Consensus 25 ~~iqdeeD~~CpICLe~f~~~d~~~vl~C----gH~FC~~CI~~WLq~s 69 (385)
.++....-+.|.+|.|-+.+ .....| .|.||+.|-++.++.+
T Consensus 261 s~~A~~apLcCTLC~ERLED---THFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 261 SGAAPSAPLCCTLCHERLED---THFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred cccCCCCceeehhhhhhhcc---CceeecCCCcccceecccCHHHHHhh
Confidence 34455567999999999955 334466 5999999999988754
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=74.49 E-value=2.5 Score=37.88 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=36.2
Q ss_pred CCcccccccccccCCCCce-eeccCCcccHHHHHHHHhc---CCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~-vl~CgH~FC~~CI~~WLq~---s~sCPvCR~~l~~ 81 (385)
.--+|.||.|...+..-.. ---||-..|--|....|+. +..||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3457999999874421111 1258999999998777764 5789999988764
No 113
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=1.8 Score=41.25 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=27.6
Q ss_pred cccccccccCCCCceeeccCC-cccHHHHHHHHhcCCCCCCccccC
Q 016675 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH-~FC~~CI~~WLq~s~sCPvCR~~l 79 (385)
|-+|.+.- -.+.++||.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChh
Confidence 88888763 3477789997 678878533 35699997654
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=2.6 Score=44.16 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=31.3
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~ 68 (385)
.+..+..|-||.+.+.. ....+.|+|.||..|+..++..
T Consensus 66 ~~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 66 KKKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 34457899999999833 4566799999999999998865
No 115
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.39 E-value=2.9 Score=46.67 Aligned_cols=42 Identities=26% Similarity=0.671 Sum_probs=31.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPv 74 (385)
-..|.||--.+. +-......|+|..|..|..+|+...-.||.
T Consensus 1028 ~~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 445676654431 223455789999999999999999888885
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.47 E-value=2.6 Score=41.46 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~ 68 (385)
=+.|+.||..+.+ +++++=||.||..||++++..
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHHH
Confidence 4579999999844 677799999999999997643
No 117
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=69.41 E-value=3.2 Score=42.21 Aligned_cols=58 Identities=28% Similarity=0.439 Sum_probs=39.0
Q ss_pred hHhhhhccCCC-CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 19 AAAFVEGGIQD-SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 19 ~~a~ve~~iqd-eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
+.+|+|..... ..+..|-.|.+........+.-.|++.||.+|=.-.-+.-..||-|.
T Consensus 316 L~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 316 LKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34555555432 23445999977775555556678999999999544444456799996
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.56 E-value=3.5 Score=41.82 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=36.8
Q ss_pred cccccccccccCCCCcee-eccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 33 DACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~v-l~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..|+||.+.....+...+ -+|++..|+.|+..-...+.+||.||+....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 689999998733332222 3678888999998888889999999966543
No 119
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.43 E-value=2.5 Score=40.61 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=36.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l 79 (385)
-..|.+|......+ ...-.|+-.||..|+..+++....||.|.--+
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchhccc
Confidence 34799999987332 44557778899999999999999999995433
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.07 E-value=5.9 Score=39.11 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCCCCCCccchhhhHhhhhccCCCC----------------CCcccccccccccCCC-CceeeccCCcccHHHHHHHHh
Q 016675 5 GMEEGKKPEDHMTSAAAFVEGGIQDS----------------CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQ 67 (385)
Q Consensus 5 ~~~~~k~~~~~l~s~~a~ve~~iqde----------------eD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WLq 67 (385)
++....+...||.+...+|+-.+... ....|||---.|.... -..+-.|||.|-..-+.+.-
T Consensus 68 ~Ks~~pksaShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik- 146 (293)
T KOG3113|consen 68 DKSSLPKSASHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK- 146 (293)
T ss_pred hcccCCcchhhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHhh-
Confidence 34445566677777777766544322 2457998766663221 13456999999998877644
Q ss_pred cCCCCCCccccCCCCC
Q 016675 68 RSSQCPMCWQPISLKD 83 (385)
Q Consensus 68 ~s~sCPvCR~~l~~kd 83 (385)
...|++|.+.+...|
T Consensus 147 -as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 147 -ASVCHVCGAAYQEDD 161 (293)
T ss_pred -hccccccCCcccccC
Confidence 578999988877665
No 121
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=67.01 E-value=6.2 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.558 Sum_probs=26.1
Q ss_pred CCcccccccccccCCCCc-eeeccCCcccHHHHHH
Q 016675 31 CDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLE 64 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~ 64 (385)
....|++|-+.|.+++.+ .-..|+-.||..|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 355799999999755444 4478999999999643
No 122
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=62.54 E-value=3.1 Score=45.26 Aligned_cols=41 Identities=27% Similarity=0.770 Sum_probs=26.2
Q ss_pred Cccccccccc-----ccCCCCceeeccCCcccHHHHHHHHhcCCCCCCc
Q 016675 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 32 D~~CpICLe~-----f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvC 75 (385)
-..|.||... |..........|++.||..|+.. .+..||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4567777332 21222345578999999999543 44559999
No 123
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.59 E-value=4 Score=42.27 Aligned_cols=42 Identities=24% Similarity=0.602 Sum_probs=31.0
Q ss_pred cccccccccccC--C-CCceeeccCCcccHHHHHHHHhcCCCCCCc
Q 016675 33 DACSICLEEFSE--S-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 33 ~~CpICLe~f~~--~-d~~~vl~CgH~FC~~CI~~WLq~s~sCPvC 75 (385)
..|++|.-.+.- + ..++.. |+|.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 469988876532 2 123445 99999999999999888877666
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=60.23 E-value=4.7 Score=39.10 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=35.0
Q ss_pred CcccccccccccCCCC-ceeeccC-----CcccHHHHHHHHh--cCCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~-~~vl~Cg-----H~FC~~CI~~WLq--~s~sCPvCR~~l~ 80 (385)
+..|-||......... ....+|. +..|..|+..|+. ....|.+|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999997633211 3455664 5679999999998 4567999987554
No 125
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.30 E-value=4.3 Score=45.52 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=34.9
Q ss_pred cCCCCCCcccccccccccCC----CCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 26 GIQDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~----d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
+..-..+..|.-|++..... +...++.|+|.||+.|+..-..+.. |-.|-
T Consensus 778 Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 778 GVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred CeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 33344466899999986422 3467789999999999976655544 66663
No 126
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.94 E-value=3.3 Score=41.72 Aligned_cols=49 Identities=29% Similarity=0.630 Sum_probs=38.8
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.++.|.||...+.. +-+.-.|+|.||..|...|.....-||.|+.....
T Consensus 104 ~~~~~~~~~g~l~v--pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 104 DHDICYICYGKLTV--PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CccceeeeeeeEEe--cccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 36789999988733 22334699999999999999999999999876654
No 127
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.54 E-value=14 Score=30.34 Aligned_cols=53 Identities=17% Similarity=0.419 Sum_probs=20.8
Q ss_pred CCCCCcccccccccccCC---CC-ceeeccCCcccHHHHH-HHHhcCCCCCCccccCC
Q 016675 28 QDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~-~WLq~s~sCPvCR~~l~ 80 (385)
++-....|.||-+.+... +. +..-.|.--.|..|+. +....++.||.|+..+.
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 334456899999987422 21 2234788889999985 33445788999986654
No 128
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=52.48 E-value=25 Score=38.78 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=33.5
Q ss_pred cccccccccccCCCCceeeccCCcccH--HHHH-HHHh-cC-----CCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHL--QCVL-EWCQ-RS-----SQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~--~CI~-~WLq-~s-----~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
+.|+|+.--+ .++|.+..|+ .|+. .|+. .+ -.||+|.+.....++....++-.+...
T Consensus 307 L~CPl~~~Rm-------~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 307 LNCPLSKMRM-------SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQS 372 (636)
T ss_pred ecCCccccee-------ecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhh
Confidence 4566665544 2355544444 4543 3332 21 259999999998888877665555433
No 129
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.80 E-value=7.4 Score=41.88 Aligned_cols=46 Identities=30% Similarity=0.838 Sum_probs=37.0
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
-++.|.||+... ..+..+|. |.-|+..|+..+..||+|+..+...+
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 366899999987 24566787 78899999999999999988776544
No 130
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=50.01 E-value=6.8 Score=29.49 Aligned_cols=41 Identities=24% Similarity=0.634 Sum_probs=20.3
Q ss_pred cccccccccCCC-------CceeeccCCcccHHHHHHHHhcCCCCCCc
Q 016675 35 CSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 35 CpICLe~f~~~d-------~~~vl~CgH~FC~~CI~~WLq~s~sCPvC 75 (385)
|.-|+..|.... ...-..|++.||.+|=.---+.-..||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCC
Confidence 555666664321 12336899999999943322334679988
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.52 E-value=3.5 Score=40.62 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCCcccccccccccCCCCceee---ccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 30 SCDDACSICLEEFSESDPSTVT---SCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl---~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
+....||||-....-.. +... .-.|.+|.-|-.+|-.....||.|-.
T Consensus 170 w~~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp TT-SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred ccCCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 34579999988642100 0001 13678899999999988889999954
No 132
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.46 E-value=2.9 Score=33.48 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=22.1
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
|..||+|...+.. .. +|.+|..|-.. +.....||-|.++|.
T Consensus 1 e~~CP~C~~~L~~------~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW------QG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE------ET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE------eC-CEEECcccccc-ceecccCCCcccHHH
Confidence 4689999988732 12 77888888654 334567999988764
No 133
>PLN02189 cellulose synthase
Probab=47.74 E-value=16 Score=42.54 Aligned_cols=53 Identities=19% Similarity=0.419 Sum_probs=35.1
Q ss_pred CCCCCcccccccccccCC---CC-ceeeccCCcccHHHHHH-HHhcCCCCCCccccCC
Q 016675 28 QDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~~-WLq~s~sCPvCR~~l~ 80 (385)
+.-....|.||-+.+... ++ +..-.|+--.|..|.+- .-..++.||-|+..+.
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344455899999997522 21 22345777799999832 2334678999988765
No 134
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=47.60 E-value=17 Score=37.16 Aligned_cols=52 Identities=21% Similarity=0.530 Sum_probs=35.6
Q ss_pred CCCccccccccccc--------------CCCCc--eeeccCCcccHHHHHHHHhc---------CCCCCCccccCCC
Q 016675 30 SCDDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (385)
Q Consensus 30 eeD~~CpICLe~f~--------------~~d~~--~vl~CgH~FC~~CI~~WLq~---------s~sCPvCR~~l~~ 81 (385)
..+.+||+|+..-. +..++ ...||+|..-.+-..-|.+- +..||.|-..|..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34789999997521 11122 44699998888888888763 3469999776654
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.18 E-value=15 Score=41.34 Aligned_cols=43 Identities=21% Similarity=0.430 Sum_probs=32.2
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCC--ccc
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM--CWQ 77 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPv--CR~ 77 (385)
.|.+|-..+.. -......|+|.-|..|+..|+....-||. |-.
T Consensus 781 ~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 781 KCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred Cceeecceeee-eEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 58888776632 12233579999999999999999888877 644
No 136
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=42.62 E-value=21 Score=36.83 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=34.5
Q ss_pred CCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc------------------CCCCCCccccCCCCCcchHH
Q 016675 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------------------SSQCPMCWQPISLKDATSQE 88 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~------------------s~sCPvCR~~l~~kd~~s~e 88 (385)
+.+..+..||+|-+...- -...++.|.- |+.-+.+-++. .++||.||..-+ +....
T Consensus 10 ydedl~ElCPVCGDkVSG-YHYGLLTCES--CKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKC---LtvGM 83 (475)
T KOG4218|consen 10 YDEDLGELCPVCGDKVSG-YHYGLLTCES--CKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKC---LTVGM 83 (475)
T ss_pred CccccccccccccCcccc-ceeeeeehhh--hhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHH---hhhhh
Confidence 455667789999987632 2223344421 12122222221 257999987533 23344
Q ss_pred HHHHHHHhhh
Q 016675 89 LLEAVEQERS 98 (385)
Q Consensus 89 lleave~er~ 98 (385)
-++++..+|.
T Consensus 84 klEAVRADRM 93 (475)
T KOG4218|consen 84 KLEAVRADRM 93 (475)
T ss_pred hHHHHHHhhh
Confidence 5666665543
No 137
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.18 E-value=16 Score=34.31 Aligned_cols=40 Identities=30% Similarity=0.718 Sum_probs=27.1
Q ss_pred Cccccccccc-----ccCCCCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 32 DDACSICLEE-----FSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 32 D~~CpICLe~-----f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
-..|-||-+. |..+....-..|+..||..|+.. ..||.|-
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4578888752 21222334468999999999752 6799993
No 138
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.94 E-value=23 Score=41.42 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=34.1
Q ss_pred CCcccccccccccCC---CC-ceeeccCCcccHHHHH-HHHhcCCCCCCccccCC
Q 016675 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 31 eD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~-~WLq~s~sCPvCR~~l~ 80 (385)
....|.||-+.+... ++ +..-.|+--.|..|.+ +.-+.++.||-|+..+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345899999997432 21 2334677779999983 33345678999987664
No 139
>PLN02436 cellulose synthase A
Probab=41.63 E-value=22 Score=41.52 Aligned_cols=54 Identities=20% Similarity=0.500 Sum_probs=35.3
Q ss_pred CCCCCCcccccccccccC---CCC-ceeeccCCcccHHHHHH-HHhcCCCCCCccccCC
Q 016675 27 IQDSCDDACSICLEEFSE---SDP-STVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~---~d~-~~vl~CgH~FC~~CI~~-WLq~s~sCPvCR~~l~ 80 (385)
++.-....|.||-|.+.. +++ +..-.|+--.|..|.+. .-..++.||.|+..+.
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 344445589999999742 222 22245777799999832 2234678999988765
No 140
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=4.2 Score=39.79 Aligned_cols=49 Identities=24% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCCcccccccccccCC---CCceeec--------cCCcccHHHHHHHHhcC-CCCCCcccc
Q 016675 30 SCDDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQRS-SQCPMCWQP 78 (385)
Q Consensus 30 eeD~~CpICLe~f~~~---d~~~vl~--------CgH~FC~~CI~~WLq~s-~sCPvCR~~ 78 (385)
..+..|.||...+... ..+.++. |+|..|..|+..-+... ..||.|+..
T Consensus 205 ~~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 205 IIEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 3457799999998621 2345566 99999999999887654 579999874
No 141
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.98 E-value=21 Score=31.13 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=33.2
Q ss_pred CcccccccccccCC-----------CCceeeccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 32 DDACSICLEEFSES-----------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 32 D~~CpICLe~f~~~-----------d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
...|--|+..|... ....-..|.+.||.+|=.-+-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 34699999988431 0122468999999999777777777899995
No 142
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=38.77 E-value=17 Score=36.15 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=33.3
Q ss_pred cccccccccccCCCCcee----eccCCcccHHHHHHHH-hc--------CCCCCCccccCCC
Q 016675 33 DACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWC-QR--------SSQCPMCWQPISL 81 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~v----l~CgH~FC~~CI~~WL-q~--------s~sCPvCR~~l~~ 81 (385)
..|-||.+.+.+.+...+ ..|.-.+|..|+-..+ .. ...||.|++.+.-
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~w 244 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLSW 244 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceeeH
Confidence 589999998843332222 4688899999998843 22 2469999885543
No 143
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=38.69 E-value=10 Score=39.57 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCcccccccccc--------------cCCCCc--eeeccCCcccHHHHHHHHhc---------CCCCCCccccCCC
Q 016675 31 CDDACSICLEEF--------------SESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f--------------~~~d~~--~vl~CgH~FC~~CI~~WLq~---------s~sCPvCR~~l~~ 81 (385)
.+.+||||+..- .+..++ ..-||||..-.+...-|.+- +..||.|-..|..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 378999999752 122223 33699999888888888763 2469999777764
No 144
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.68 E-value=18 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.805 Sum_probs=9.3
Q ss_pred cccHHHHHHHHhc
Q 016675 56 EFHLQCVLEWCQR 68 (385)
Q Consensus 56 ~FC~~CI~~WLq~ 68 (385)
.||..||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999863
No 145
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.24 E-value=9.7 Score=34.37 Aligned_cols=29 Identities=31% Similarity=0.878 Sum_probs=18.5
Q ss_pred CCCccccccccc-ccCCCCceeeccCCcccHHHHHHHH
Q 016675 30 SCDDACSICLEE-FSESDPSTVTSCKHEFHLQCVLEWC 66 (385)
Q Consensus 30 eeD~~CpICLe~-f~~~d~~~vl~CgH~FC~~CI~~WL 66 (385)
..|-+|.||+.. |.+ .|+|. |..|-.+..
T Consensus 63 ~ddatC~IC~KTKFAD-------G~GH~-C~YCq~r~C 92 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD-------GCGHN-CSYCQTRFC 92 (169)
T ss_pred CcCcchhhhhhccccc-------ccCcc-cchhhhhHH
Confidence 348899999985 333 57774 445555544
No 146
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=36.26 E-value=15 Score=38.43 Aligned_cols=33 Identities=18% Similarity=0.551 Sum_probs=24.2
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHH
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WL 66 (385)
.+|+||+.++.... -.+..|....|..|+.++-
T Consensus 75 ~ecpicflyyps~~-n~~rcC~~~Ic~ecf~~~~ 107 (482)
T KOG2789|consen 75 TECPICFLYYPSAK-NLVRCCSETICGECFAPFG 107 (482)
T ss_pred ccCceeeeeccccc-chhhhhccchhhhheeccc
Confidence 48999999884321 2334799999999988763
No 147
>PLN02400 cellulose synthase
Probab=35.43 E-value=24 Score=41.18 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=35.6
Q ss_pred CCCCCCcccccccccccCC---CC-ceeeccCCcccHHHHH-HHHhcCCCCCCccccCC
Q 016675 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~-~WLq~s~sCPvCR~~l~ 80 (385)
++.-....|.||-|.+... ++ +..-.|+--.|..|.+ +..+.++.||-|+..+.
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3444455899999997432 21 2334677779999983 23344678999987654
No 148
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=33.66 E-value=38 Score=33.34 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=43.4
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCC--CCCC--ccccCCCCCcchHHHHHHHHHhhhh
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPM--CWQPISLKDATSQELLEAVEQERSI 99 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~--sCPv--CR~~l~~kd~~s~elleave~er~~ 99 (385)
-++.|||-+..+ .-+..-..|.|.|-.+-|...++... .||. |.+.+...++.-.+.++.-+....+
T Consensus 188 ~~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~i 258 (275)
T COG5627 188 LSNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYI 258 (275)
T ss_pred hcccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHH
Confidence 378999966654 23344479999999999999998544 4764 6555555555545555544333333
No 149
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.54 E-value=73 Score=24.64 Aligned_cols=47 Identities=17% Similarity=0.453 Sum_probs=30.7
Q ss_pred ccccccccccCCC-CceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 34 ACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 34 ~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
.|-.|-..+..+. ...+-.=...||..|....+ +..||.|-..|..+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4666777665433 12221223589999998877 57899998776543
No 150
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.69 E-value=16 Score=27.86 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=17.7
Q ss_pred CCCCcccccccccccCCC-CceeeccCCcccHHHHHH
Q 016675 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~ 64 (385)
+.+...|.+|...|..-. ...--.||+.||..|...
T Consensus 6 d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 6 DSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 445678999999994321 123357999999888654
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.56 E-value=10 Score=38.26 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=30.3
Q ss_pred CcccccccccccCCCCcee----eccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~v----l~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
...||||-....-.- +.. -.=.+.+|.-|-.+|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 448999998742110 000 112366788899999998899999965
No 153
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=31.67 E-value=16 Score=38.28 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=0.0
Q ss_pred Cccccccccccc-----------CCCCceeeccCCcccHHHHHHHHhc------CCCCCCccccCCC
Q 016675 32 DDACSICLEEFS-----------ESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~-----------~~d~~~vl~CgH~FC~~CI~~WLq~------s~sCPvCR~~l~~ 81 (385)
-..||+=|..+. +..+-..+.|+|.+..+ .|... ...||+||..-..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 456887665542 23444668999987765 56532 4579999886544
No 154
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.40 E-value=13 Score=37.54 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCCcee----eccCCcccHHHHHHHHhcCCCCCCccc
Q 016675 31 CDDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~v----l~CgH~FC~~CI~~WLq~s~sCPvCR~ 77 (385)
....||||-....-. +.. -.=.+.+|.-|-.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 468899998874211 000 122467788899999998899999964
No 155
>PLN02195 cellulose synthase A
Probab=30.43 E-value=50 Score=38.34 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCcccccccccccCC---CC-ceeeccCCcccHHHHHH-HHhcCCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~~-WLq~s~sCPvCR~~l~~ 81 (385)
....|.||-+.+... ++ +..-.|+--.|..|.+- -.+.++.||.|+..+..
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 345899999977432 21 23357888899999832 12346789999988873
No 156
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=30.36 E-value=22 Score=27.92 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.1
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016675 312 SENRSE-NVGITSVSRLMEQLGTGE 335 (385)
Q Consensus 312 ~~~~re-~agia~v~rm~e~l~~~~ 335 (385)
+-+||. .-|-.-.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 457999 999999999999999665
No 157
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.85 E-value=17 Score=34.16 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=20.5
Q ss_pred HHhhhhhhh-hhhhhhcccccccchhhhh
Q 016675 273 SLKSRFNAV-SMRYKESISKSTRGWKERL 300 (385)
Q Consensus 273 ~~~s~~~~~-s~~yk~si~k~t~g~ke~~ 300 (385)
-++++.+.- -|||||+|+|+++|+-+.|
T Consensus 135 G~~r~Vqe~sl~rFkenv~ktrkGl~yvl 163 (201)
T KOG3337|consen 135 GVSRAVQEFSLARFKENVTKTRKGLEYVL 163 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555443 4799999999999997543
No 159
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=28.73 E-value=47 Score=21.55 Aligned_cols=36 Identities=19% Similarity=0.600 Sum_probs=21.5
Q ss_pred cccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccC
Q 016675 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (385)
Q Consensus 35 CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l 79 (385)
|..|.+.+.... ..+..=+..||..| ..|..|...|
T Consensus 2 C~~C~~~i~~~~-~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGE-LVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCc-EEEEeCCccccccC--------CCCcccCCcC
Confidence 778888774421 22323456677766 4677777665
No 160
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=28.69 E-value=29 Score=25.56 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=21.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc--CCCCCCccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--s~sCPvCR~ 77 (385)
...||.|.+.|.. . .+...|....... ...||+|..
T Consensus 2 ~f~CP~C~~~~~~---~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSE---S-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCH---H-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 5689999986521 1 1334455444432 356999965
No 161
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.29 E-value=42 Score=37.39 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=32.3
Q ss_pred ccccccccccCCCCceeeccCC-cccHHHHHHHHh--c----CCCCCCccccC
Q 016675 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH-~FC~~CI~~WLq--~----s~sCPvCR~~l 79 (385)
.|+||-..+ +-+..-.|+| ..|..|..+... . ...||+|+..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 599999876 2255669999 999999877653 2 34689998744
No 162
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=26.96 E-value=39 Score=37.89 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=18.4
Q ss_pred eccCCcccHHHHHHHHhcCCCCCCcc
Q 016675 51 TSCKHEFHLQCVLEWCQRSSQCPMCW 76 (385)
Q Consensus 51 l~CgH~FC~~CI~~WLq~s~sCPvCR 76 (385)
.+-+.+||.+|-..--....+|-+|-
T Consensus 44 VPtGpWfCrKCesqeraarvrCeLCP 69 (900)
T KOG0956|consen 44 VPTGPWFCRKCESQERAARVRCELCP 69 (900)
T ss_pred cCCCchhhhhhhhhhhhccceeeccc
Confidence 46788999999755444456777774
No 163
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.57 E-value=46 Score=38.92 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=33.4
Q ss_pred CcccccccccccCC---CC-ceeeccCCcccHHHHHH-HHhcCCCCCCccccCC
Q 016675 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~~-WLq~s~sCPvCR~~l~ 80 (385)
...|.||-+.+... ++ +..-.|+--.|..|.+- .-+.++.||.|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45799999987432 21 23346777799999832 2334678999988765
No 164
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.88 E-value=20 Score=37.64 Aligned_cols=37 Identities=27% Similarity=0.564 Sum_probs=26.1
Q ss_pred cccccccccccCCC-C--cee--eccCCcccHHHHHHHHhcC
Q 016675 33 DACSICLEEFSESD-P--STV--TSCKHEFHLQCVLEWCQRS 69 (385)
Q Consensus 33 ~~CpICLe~f~~~d-~--~~v--l~CgH~FC~~CI~~WLq~s 69 (385)
..||.|...+.... . ... ..|.|.||+.|+..|..+.
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 34999999875432 1 122 2499999999988887764
No 165
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.41 E-value=83 Score=26.80 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=19.0
Q ss_pred CCcccHHHHHHHHhc---------CCCCCCcccc
Q 016675 54 KHEFHLQCVLEWCQR---------SSQCPMCWQP 78 (385)
Q Consensus 54 gH~FC~~CI~~WLq~---------s~sCPvCR~~ 78 (385)
.-.||..||..++.. .-.||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999887643 2359999874
No 166
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=24.59 E-value=36 Score=26.70 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 016675 312 SENRSE-NVGITSVSRLMEQLGTGE 335 (385)
Q Consensus 312 ~~~~re-~agia~v~rm~e~l~~~~ 335 (385)
|-+||. .-|...-+|+||+||..+
T Consensus 23 S~lQR~~~IGynrAariid~lE~~G 47 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEG 47 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCc
Confidence 457999 999999999999999665
No 167
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.91 E-value=41 Score=28.85 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=27.9
Q ss_pred CCcccccccccccCC--CCceeeccCCcccHHHHHHHHhcCC--CCCCccc
Q 016675 31 CDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (385)
Q Consensus 31 eD~~CpICLe~f~~~--d~~~vl~CgH~FC~~CI~~WLq~s~--sCPvCR~ 77 (385)
.+..|.+|...|.-- .......|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 577999999876321 2345578999999998544 11111 4777744
No 168
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=23.81 E-value=21 Score=40.52 Aligned_cols=48 Identities=19% Similarity=0.553 Sum_probs=32.9
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc------CCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~------s~sCPvCR~~l~ 80 (385)
...|..|...+.. ..-+...|++.||..|+..|.-. -..|+.||....
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 4578899876522 12355789999999999999621 135777776544
No 169
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=91 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.437 Sum_probs=29.3
Q ss_pred cccccccccCCC-CceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 35 CSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 35 CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
|--|-.++..+. ...+-.=.|.||..|....+ +..||.|-..+.-...
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~ 56 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPI 56 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcC
Confidence 445555553321 12221234899999987654 5789999887765543
No 170
>PF15419 LNP1: Leukemia NUP98 fusion partner 1
Probab=23.30 E-value=64 Score=30.12 Aligned_cols=42 Identities=31% Similarity=0.454 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCcccchHHHhhhhhhhhhhhhhcccccccchhhh
Q 016675 253 QTSSPTHDRAGPSDLQSFSESLKSRFNAVSMRYKESISKSTRGWKER 299 (385)
Q Consensus 253 ~~~~~~~~~~~~s~~~s~~~~~~s~~~~~s~~yk~si~k~t~g~ke~ 299 (385)
+-++....|... +|-|+|||--+| -.|-|-|+|-+-.|-|||
T Consensus 98 ~ep~~p~~RshS--IqeFSESFEqQL---cfrtKrSvSL~pe~rKeR 139 (177)
T PF15419_consen 98 KEPLEPKGRSHS--IQEFSESFEQQL---CFRTKRSVSLGPESRKER 139 (177)
T ss_pred cCCCCCCccccc--HHHHHHHHHHHH---HhhcccCCCCCccchHHH
Confidence 344555566665 999999998776 478899999999999875
No 171
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=22.91 E-value=29 Score=24.76 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=25.4
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHh------cCCCCCCcc
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ------RSSQCPMCW 76 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq------~s~sCPvCR 76 (385)
.|.||......++-+.--.|...||..|+..-.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888988432222222247889999999754322 134577774
No 172
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.88 E-value=64 Score=31.31 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=21.1
Q ss_pred cccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 56 EFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 56 ~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
.-|..|-..--..-..||+|+..-..+++
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccccCCC
Confidence 35888877666667899999887665543
No 173
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=21.93 E-value=17 Score=26.72 Aligned_cols=32 Identities=19% Similarity=0.559 Sum_probs=20.1
Q ss_pred ccc--cccccccCC----CCcee-eccCCcccHHHHHHH
Q 016675 34 ACS--ICLEEFSES----DPSTV-TSCKHEFHLQCVLEW 65 (385)
Q Consensus 34 ~Cp--ICLe~f~~~----d~~~v-l~CgH~FC~~CI~~W 65 (385)
-|| =|...+... ..... ..|++.||..|..+|
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 477 665544321 22222 368999999998887
No 174
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=21.90 E-value=64 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 55 HEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 55 H~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
-..|..|-...-..-..||+|+.....++
T Consensus 249 MK~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred chHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 34688887776666789999988765544
No 175
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.51 E-value=55 Score=32.44 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=33.1
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC--CCCCCccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~ 77 (385)
++.|||-...+ ..|+.-..|+|.|=.+-|...+... -.||+--+
T Consensus 176 s~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeecccccC
Confidence 77899966665 4556668999999999999988763 35776543
No 176
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.38 E-value=26 Score=29.06 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCCCCCCCcccccc--ccchhHHHHHHHHhcCCC
Q 016675 304 NASMPGTGSENRSE--NVGITSVSRLMEQLGTGE 335 (385)
Q Consensus 304 ~~~~~~~~~~~~re--~agia~v~rm~e~l~~~~ 335 (385)
.-|+.||-..++++ +.+.++|+|.++.|...+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 35677888888776 899999999999998654
No 177
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.93 E-value=68 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.3
Q ss_pred cccccccccccCCC-CceeeccCCcccHHHHHHHH
Q 016675 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (385)
Q Consensus 33 ~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WL 66 (385)
..|.+|-..|.... ...-..|++.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46999988774321 22346899999999976543
Done!