Query 016675
Match_columns 385
No_of_seqs 243 out of 1602
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 17:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.4 7.4E-13 2.5E-17 100.6 5.7 56 28-83 10-65 (69)
2 2l0b_A E3 ubiquitin-protein li 99.3 5.1E-13 1.7E-17 107.8 4.8 68 14-81 20-89 (91)
3 2ect_A Ring finger protein 126 99.3 5.5E-13 1.9E-17 103.7 4.3 55 29-83 12-66 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.3 6.9E-13 2.4E-17 96.3 3.8 51 30-80 3-54 (55)
5 2ep4_A Ring finger protein 24; 99.3 1.2E-12 4E-17 100.8 5.2 54 29-82 12-65 (74)
6 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.5E-17 101.5 4.8 61 29-92 5-66 (78)
7 1x4j_A Ring finger protein 38; 99.3 8.4E-13 2.9E-17 102.2 3.4 53 29-81 20-72 (75)
8 2djb_A Polycomb group ring fin 99.3 1.6E-12 5.5E-17 100.0 4.7 53 30-84 13-65 (72)
9 3ng2_A RNF4, snurf, ring finge 99.3 1.5E-12 5.2E-17 98.9 3.9 58 27-84 5-66 (71)
10 3lrq_A E3 ubiquitin-protein li 99.3 9.4E-13 3.2E-17 108.0 1.9 61 31-93 21-82 (100)
11 2ecm_A Ring finger and CHY zin 99.2 4E-12 1.4E-16 92.1 4.3 51 30-80 3-54 (55)
12 2csy_A Zinc finger protein 183 99.2 7.5E-12 2.6E-16 98.1 6.2 49 29-80 12-60 (81)
13 2ea6_A Ring finger protein 4; 99.2 3.2E-12 1.1E-16 96.2 3.8 53 29-81 12-68 (69)
14 2y43_A E3 ubiquitin-protein li 99.2 2.4E-12 8.3E-17 104.6 3.3 61 31-93 21-81 (99)
15 1v87_A Deltex protein 2; ring- 99.2 6.7E-12 2.3E-16 104.2 6.0 54 29-82 22-95 (114)
16 2d8t_A Dactylidin, ring finger 99.2 5.8E-12 2E-16 96.6 4.0 50 29-81 12-61 (71)
17 2ecl_A Ring-box protein 2; RNF 99.2 8.2E-12 2.8E-16 98.8 5.0 53 30-82 13-77 (81)
18 3ztg_A E3 ubiquitin-protein li 99.2 9.7E-12 3.3E-16 99.5 5.4 61 30-93 11-75 (92)
19 4ayc_A E3 ubiquitin-protein li 99.2 3.5E-12 1.2E-16 110.1 3.1 50 31-83 52-101 (138)
20 3fl2_A E3 ubiquitin-protein li 99.2 8.2E-12 2.8E-16 105.6 4.9 61 31-94 51-113 (124)
21 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.7E-16 94.8 4.9 51 30-83 18-71 (73)
22 1chc_A Equine herpes virus-1 r 99.2 6.7E-12 2.3E-16 94.9 3.5 50 30-81 3-52 (68)
23 2xeu_A Ring finger protein 4; 99.2 7.5E-12 2.5E-16 92.9 3.6 54 31-84 2-59 (64)
24 2ckl_A Polycomb group ring fin 99.2 9.9E-12 3.4E-16 102.7 4.7 50 31-82 14-63 (108)
25 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.6E-16 97.2 5.2 54 30-83 13-70 (88)
26 2kr4_A Ubiquitin conjugation f 99.2 1.5E-11 5.3E-16 98.4 5.0 61 31-94 13-73 (85)
27 2ecy_A TNF receptor-associated 99.2 1.5E-11 5E-16 92.9 4.6 51 30-83 13-64 (66)
28 2yur_A Retinoblastoma-binding 99.2 1.1E-11 3.9E-16 95.9 4.1 51 30-83 13-66 (74)
29 2ecw_A Tripartite motif-contai 99.2 1.7E-11 5.9E-16 95.4 4.4 50 31-83 18-73 (85)
30 2kre_A Ubiquitin conjugation f 99.2 3.6E-11 1.2E-15 99.4 6.4 64 30-96 27-90 (100)
31 1wgm_A Ubiquitin conjugation f 99.2 2.6E-11 8.9E-16 99.9 5.5 64 30-96 20-84 (98)
32 3dpl_R Ring-box protein 1; ubi 99.1 2.2E-11 7.4E-16 102.0 4.6 53 30-82 35-102 (106)
33 1z6u_A NP95-like ring finger p 99.1 3.2E-11 1.1E-15 106.2 5.7 62 31-95 77-140 (150)
34 2ecv_A Tripartite motif-contai 99.1 2.2E-11 7.7E-16 94.8 4.0 50 31-83 18-73 (85)
35 2egp_A Tripartite motif-contai 99.1 7.7E-12 2.6E-16 96.9 1.3 51 30-83 10-67 (79)
36 2ecn_A Ring finger protein 141 99.1 1.1E-11 3.8E-16 94.3 1.9 50 30-83 13-62 (70)
37 2ckl_B Ubiquitin ligase protei 99.1 2.9E-11 9.8E-16 107.0 3.3 62 31-94 53-116 (165)
38 2ysj_A Tripartite motif-contai 99.1 7.1E-11 2.4E-15 88.2 4.6 43 30-75 18-63 (63)
39 1jm7_A BRCA1, breast cancer ty 99.1 2.9E-11 1E-15 99.5 1.7 50 32-84 21-73 (112)
40 3hct_A TNF receptor-associated 99.1 6.4E-11 2.2E-15 99.5 3.6 66 30-98 16-82 (118)
41 1g25_A CDK-activating kinase a 99.0 1.2E-10 4.2E-15 87.5 4.1 54 31-84 2-58 (65)
42 4ap4_A E3 ubiquitin ligase RNF 99.0 9.2E-11 3.1E-15 98.3 3.8 54 30-83 5-62 (133)
43 1jm7_B BARD1, BRCA1-associated 99.0 5.4E-11 1.9E-15 99.8 2.2 58 31-93 21-79 (117)
44 3l11_A E3 ubiquitin-protein li 99.0 4.4E-11 1.5E-15 99.6 0.9 50 29-81 12-62 (115)
45 2c2l_A CHIP, carboxy terminus 99.0 1.5E-10 5.3E-15 108.2 4.4 65 29-96 205-270 (281)
46 4a0k_B E3 ubiquitin-protein li 99.0 4.2E-11 1.4E-15 102.2 0.5 53 30-82 46-113 (117)
47 2ecj_A Tripartite motif-contai 99.0 1.7E-10 5.7E-15 84.2 3.6 43 30-75 13-58 (58)
48 2yu4_A E3 SUMO-protein ligase 99.0 2E-10 6.7E-15 93.4 4.3 64 30-96 5-78 (94)
49 2d8s_A Cellular modulator of i 99.0 2.6E-10 8.9E-15 90.9 3.9 55 27-82 10-71 (80)
50 1rmd_A RAG1; V(D)J recombinati 98.9 3.1E-10 1.1E-14 94.6 3.2 51 31-84 22-73 (116)
51 1e4u_A Transcriptional repress 98.9 6.9E-10 2.3E-14 87.9 4.8 53 30-83 9-64 (78)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 5.9E-10 2E-14 93.3 3.3 57 28-84 68-128 (133)
53 1bor_A Transcription factor PM 98.9 4.3E-10 1.5E-14 82.9 1.6 49 29-83 3-51 (56)
54 2f42_A STIP1 homology and U-bo 98.9 2.5E-09 8.4E-14 97.5 6.5 64 30-96 104-168 (179)
55 3knv_A TNF receptor-associated 98.9 6.1E-10 2.1E-14 97.1 2.2 49 30-81 29-78 (141)
56 2vje_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 81.7 4.0 49 29-80 5-56 (64)
57 3hcs_A TNF receptor-associated 98.8 1.5E-09 5E-14 96.3 3.6 64 30-96 16-80 (170)
58 2ct0_A Non-SMC element 1 homol 98.8 3.6E-09 1.2E-13 83.4 4.1 50 32-83 15-66 (74)
59 3htk_C E3 SUMO-protein ligase 98.8 2E-09 7E-14 103.3 3.1 63 30-94 179-245 (267)
60 4ic3_A E3 ubiquitin-protein li 98.7 1.6E-09 5.6E-14 84.1 1.3 44 31-81 23-67 (74)
61 2y1n_A E3 ubiquitin-protein li 98.7 5.2E-09 1.8E-13 105.5 5.0 48 32-82 332-380 (389)
62 2vje_B MDM4 protein; proto-onc 98.7 5.6E-09 1.9E-13 78.9 3.6 48 30-80 5-55 (63)
63 2ecg_A Baculoviral IAP repeat- 98.6 1.2E-08 4E-13 79.2 1.7 45 31-82 24-69 (75)
64 2ea5_A Cell growth regulator w 98.5 7.6E-08 2.6E-12 74.0 3.7 47 28-81 11-58 (68)
65 2bay_A PRE-mRNA splicing facto 98.5 5.5E-08 1.9E-12 73.5 2.6 51 32-85 3-54 (61)
66 2yho_A E3 ubiquitin-protein li 98.4 4E-08 1.4E-12 77.5 1.2 43 32-81 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.4 7.1E-08 2.4E-12 77.7 2.3 49 30-78 3-61 (94)
68 3t6p_A Baculoviral IAP repeat- 98.3 1E-07 3.6E-12 94.6 0.8 44 31-81 294-338 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.3 5.2E-07 1.8E-11 68.0 4.3 51 28-81 2-59 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.2 2.1E-07 7.2E-12 92.5 1.4 54 29-82 305-374 (381)
71 3vk6_A E3 ubiquitin-protein li 97.8 8.9E-06 3.1E-10 67.5 3.4 46 34-81 3-49 (101)
72 3nw0_A Non-structural maintena 97.3 0.00013 4.3E-09 68.9 4.3 51 32-84 180-232 (238)
73 2ko5_A Ring finger protein Z; 96.2 0.0015 5.1E-08 53.6 1.5 46 32-82 28-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.0099 3.4E-07 47.7 2.6 34 31-66 2-37 (101)
75 3m62_A Ubiquitin conjugation f 91.8 0.14 4.7E-06 56.9 5.0 61 30-93 889-950 (968)
76 2lri_C Autoimmune regulator; Z 89.7 0.22 7.7E-06 37.8 3.1 54 23-79 3-60 (66)
77 3i2d_A E3 SUMO-protein ligase 87.8 0.34 1.2E-05 48.5 3.8 62 32-95 249-314 (371)
78 4fo9_A E3 SUMO-protein ligase 86.3 0.45 1.6E-05 47.4 3.7 62 32-95 215-280 (360)
79 1we9_A PHD finger family prote 80.9 0.23 7.9E-06 36.8 -0.7 50 29-78 3-58 (64)
80 2l5u_A Chromodomain-helicase-D 79.2 0.84 2.9E-05 33.8 1.9 50 25-77 4-57 (61)
81 2cs3_A Protein C14ORF4, MY039 76.9 2.3 7.8E-05 34.0 3.8 37 29-68 12-52 (93)
82 3o36_A Transcription intermedi 73.4 0.69 2.4E-05 41.1 -0.0 47 30-79 2-52 (184)
83 2k16_A Transcription initiatio 72.4 0.82 2.8E-05 34.9 0.2 50 30-80 16-70 (75)
84 1weo_A Cellulose synthase, cat 72.4 6.2 0.00021 32.0 5.3 54 27-80 11-69 (93)
85 1xwh_A Autoimmune regulator; P 69.9 0.61 2.1E-05 35.0 -1.0 50 26-78 2-55 (66)
86 1fp0_A KAP-1 corepressor; PHD 69.0 1.7 5.7E-05 35.0 1.3 52 26-80 19-74 (88)
87 3u5n_A E3 ubiquitin-protein li 67.8 0.68 2.3E-05 42.0 -1.3 48 29-79 4-55 (207)
88 1mm2_A MI2-beta; PHD, zinc fin 66.7 1.1 3.7E-05 33.2 -0.2 47 29-78 6-56 (61)
89 1wew_A DNA-binding family prot 62.7 1.7 5.9E-05 33.6 0.2 52 24-78 8-72 (78)
90 2ysm_A Myeloid/lymphoid or mix 62.5 2 7E-05 35.0 0.7 49 28-76 3-55 (111)
91 1wep_A PHF8; structural genomi 62.0 4.2 0.00014 31.3 2.4 50 29-79 9-64 (79)
92 2ri7_A Nucleosome-remodeling f 61.6 1.5 5.2E-05 38.3 -0.3 51 26-77 2-58 (174)
93 1wem_A Death associated transc 61.2 2.2 7.5E-05 32.6 0.6 49 29-78 13-70 (76)
94 1weu_A Inhibitor of growth fam 61.0 4.3 0.00015 32.7 2.3 50 26-79 30-86 (91)
95 3lqh_A Histone-lysine N-methyl 60.8 1.8 6.3E-05 39.0 0.1 48 33-80 3-65 (183)
96 1f62_A Transcription factor WS 58.4 4.2 0.00014 28.5 1.7 44 34-77 2-49 (51)
97 1z60_A TFIIH basal transcripti 57.9 3.1 0.00011 31.1 0.9 43 33-75 16-58 (59)
98 2lv9_A Histone-lysine N-methyl 56.4 2.6 8.9E-05 34.0 0.3 45 32-77 28-75 (98)
99 2yql_A PHD finger protein 21A; 55.5 1 3.5E-05 32.6 -2.1 45 29-76 6-54 (56)
100 2lbm_A Transcriptional regulat 55.1 9.5 0.00032 33.1 3.7 46 29-77 60-116 (142)
101 1wen_A Inhibitor of growth fam 52.2 6.3 0.00022 30.0 1.8 49 26-79 10-66 (71)
102 2l43_A N-teminal domain from h 51.5 3.3 0.00011 32.9 0.2 55 29-83 22-80 (88)
103 2puy_A PHD finger protein 21A; 50.1 2 6.7E-05 31.5 -1.3 46 29-77 2-51 (60)
104 2vpb_A Hpygo1, pygopus homolog 50.1 9.9 0.00034 28.5 2.6 34 29-62 5-40 (65)
105 2ro1_A Transcription intermedi 48.3 3.6 0.00012 36.9 -0.1 44 32-78 2-49 (189)
106 2d8v_A Zinc finger FYVE domain 47.2 9.2 0.00032 29.3 2.0 34 28-65 4-38 (67)
107 1wil_A KIAA1045 protein; ring 47.2 18 0.00062 29.0 3.8 35 30-65 13-47 (89)
108 2e6r_A Jumonji/ARID domain-con 44.4 1.6 5.6E-05 34.9 -2.7 50 28-77 12-65 (92)
109 1z2q_A LM5-1; membrane protein 44.3 12 0.00041 29.1 2.4 37 28-64 17-54 (84)
110 3t7l_A Zinc finger FYVE domain 42.9 12 0.00039 29.7 2.1 37 29-65 17-54 (90)
111 1joc_A EEA1, early endosomal a 42.2 11 0.00039 31.5 2.1 35 29-63 66-101 (125)
112 1x4u_A Zinc finger, FYVE domai 41.6 13 0.00044 28.9 2.2 35 28-62 10-45 (84)
113 2yw8_A RUN and FYVE domain-con 41.4 12 0.00041 29.0 1.9 37 28-64 15-52 (82)
114 2kgg_A Histone demethylase jar 40.4 8.1 0.00028 27.4 0.7 43 34-76 4-52 (52)
115 2yt5_A Metal-response element- 39.5 11 0.00036 27.7 1.3 50 29-78 3-61 (66)
116 3ql9_A Transcriptional regulat 38.7 21 0.00073 30.4 3.2 46 29-77 54-110 (129)
117 1zbd_B Rabphilin-3A; G protein 38.4 9.5 0.00032 32.6 1.0 34 30-63 53-88 (134)
118 3o70_A PHD finger protein 13; 36.9 3.9 0.00013 30.9 -1.5 46 29-77 16-66 (68)
119 2zet_C Melanophilin; complex, 36.2 15 0.0005 32.2 1.9 47 30-77 66-116 (153)
120 2pv0_B DNA (cytosine-5)-methyl 36.0 28 0.00094 34.9 4.0 47 29-78 90-148 (386)
121 1wd2_A Ariadne-1 protein homol 36.0 4.6 0.00016 29.9 -1.2 37 33-69 7-48 (60)
122 2ku3_A Bromodomain-containing 35.7 33 0.0011 26.0 3.5 50 28-77 12-65 (71)
123 3v43_A Histone acetyltransfera 35.4 40 0.0014 27.3 4.3 32 32-63 5-42 (112)
124 3mpx_A FYVE, rhogef and PH dom 35.3 7.9 0.00027 38.0 0.0 51 29-79 372-430 (434)
125 4gne_A Histone-lysine N-methyl 34.0 14 0.00048 30.4 1.3 52 25-82 8-66 (107)
126 2o35_A Hypothetical protein DU 32.5 16 0.00056 30.1 1.4 13 56-68 42-54 (105)
127 1y02_A CARP2, FYVE-ring finger 32.4 3.2 0.00011 35.0 -2.9 51 28-78 15-66 (120)
128 2xb1_A Pygopus homolog 2, B-ce 32.3 18 0.00062 29.4 1.7 46 33-78 4-61 (105)
129 3fyb_A Protein of unknown func 32.3 17 0.00057 30.0 1.4 13 56-68 41-53 (104)
130 1dvp_A HRS, hepatocyte growth 31.1 17 0.00058 32.9 1.5 32 32-63 161-193 (220)
131 1vfy_A Phosphatidylinositol-3- 30.5 23 0.00078 26.7 1.9 32 32-63 11-43 (73)
132 1wfk_A Zinc finger, FYVE domai 29.9 24 0.0008 27.8 1.9 34 31-64 8-42 (88)
133 3v43_A Histone acetyltransfera 29.8 12 0.00042 30.5 0.3 44 34-77 63-111 (112)
134 3zyq_A Hepatocyte growth facto 28.6 20 0.00067 32.8 1.5 33 32-64 164-197 (226)
135 1m3v_A FLIN4, fusion of the LI 28.5 35 0.0012 27.7 2.9 51 33-83 33-83 (122)
136 2vnf_A ING 4, P29ING4, inhibit 28.1 6.2 0.00021 29.0 -1.7 44 27-77 5-58 (60)
137 2fiy_A Protein FDHE homolog; F 26.5 7.6 0.00026 37.7 -1.8 46 30-78 180-231 (309)
138 2xjy_A Rhombotin-2; oncoprotei 26.3 49 0.0017 26.8 3.4 50 32-81 29-78 (131)
139 3c6w_A P28ING5, inhibitor of g 25.0 10 0.00036 27.7 -0.9 44 28-77 5-57 (59)
140 2ct7_A Ring finger protein 31; 23.2 9.3 0.00032 29.8 -1.6 32 35-66 28-62 (86)
141 3ask_A E3 ubiquitin-protein li 23.1 15 0.00051 34.3 -0.5 45 33-77 175-224 (226)
142 3mjh_B Early endosome antigen 22.7 19 0.00063 24.0 0.1 10 33-42 6-15 (34)
143 2jmo_A Parkin; IBR, E3 ligase, 22.4 7.3 0.00025 30.1 -2.3 16 52-67 55-70 (80)
144 3lt7_A Adhesin YADA; adhesion, 22.4 6.3 0.00022 30.0 -2.6 17 311-327 44-60 (64)
145 3a1b_A DNA (cytosine-5)-methyl 22.4 38 0.0013 29.9 2.0 44 29-76 76-132 (159)
146 1x64_A Alpha-actinin-2 associa 22.0 58 0.002 24.7 2.9 40 32-82 25-64 (89)
147 1wev_A Riken cDNA 1110020M19; 21.9 23 0.00079 27.8 0.5 50 30-79 14-73 (88)
148 2cu8_A Cysteine-rich protein 2 21.7 56 0.0019 23.9 2.6 41 32-82 9-49 (76)
149 2jne_A Hypothetical protein YF 21.4 7.8 0.00027 31.9 -2.4 41 32-80 32-72 (101)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=7.4e-13 Score=100.62 Aligned_cols=56 Identities=29% Similarity=0.727 Sum_probs=48.4
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
..+.+..|+||++.|.....+..++|+|.||..||..|+..+..||+||..|....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34557789999999976667788999999999999999999999999999987643
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.35 E-value=5.1e-13 Score=107.78 Aligned_cols=68 Identities=26% Similarity=0.571 Sum_probs=52.9
Q ss_pred cchhhhHhhhhccC--CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 14 DHMTSAAAFVEGGI--QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 14 ~~l~s~~a~ve~~i--qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..+..++.++.... ..+++..|+||++.|..++.+..++|+|.||..||..|+..+..||+||..+..
T Consensus 20 ~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 20 ESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp HHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred HHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34444444433332 244678899999999776667778999999999999999999999999998764
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=5.5e-13 Score=103.66 Aligned_cols=55 Identities=22% Similarity=0.732 Sum_probs=47.8
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
...+..|+||++.|.....+.+++|+|.||..||..|+..+..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 3457899999999966556677899999999999999999999999999988765
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.32 E-value=6.9e-13 Score=96.33 Aligned_cols=51 Identities=29% Similarity=0.789 Sum_probs=44.6
Q ss_pred CCCcccccccccccCCCCceeec-cCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~-CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+++..|+||++.|..++.+..++ |+|.||..||..|+..+..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34778999999997766667776 9999999999999999999999998874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=100.81 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=46.7
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
...+..|+||++.|.......+++|+|.||..||..|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345789999999997666667789999999999999999999999999988753
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.3e-12 Score=101.46 Aligned_cols=61 Identities=16% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCCcchHHHHHH
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEA 92 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd~~s~ellea 92 (385)
-.+++.|+||++.|.+ +.+++|+|.||..||..|+.. +..||+||..+...++.++..+..
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred CcccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHH
Confidence 3458899999999944 667799999999999999987 778999999998776655544433
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=8.4e-13 Score=102.18 Aligned_cols=53 Identities=30% Similarity=0.767 Sum_probs=46.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.+++..|+||++.|...+.+..++|+|.||..||..|+..+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34578899999999765556778999999999999999999999999998865
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=99.97 Aligned_cols=53 Identities=28% Similarity=0.561 Sum_probs=45.3
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
+++..|+||++.| .+++.+++|+|.||..||..|+..+..||+||+.+...++
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 3478999999999 3445556999999999999999998999999999987654
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.5e-12 Score=98.89 Aligned_cols=58 Identities=29% Similarity=0.629 Sum_probs=47.9
Q ss_pred CCCCCCcccccccccccC----CCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 27 IQDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~----~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
...+++..|+||++.|.+ +..+.+++|+|.||..||..|+..+..||+||..+...+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 345668899999999854 1233778999999999999999999999999999887654
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=9.4e-13 Score=107.97 Aligned_cols=61 Identities=26% Similarity=0.633 Sum_probs=48.6
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCCCCcchHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~kd~~s~elleav 93 (385)
++..|+||++.|. +++.+++|+|.||..||..|+... ..||+||..+...++.....+..+
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i 82 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHH
Confidence 3779999999994 334438999999999999999987 699999999987766554444433
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.25 E-value=4e-12 Score=92.09 Aligned_cols=51 Identities=35% Similarity=0.706 Sum_probs=43.8
Q ss_pred CCCcccccccccccCC-CCceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
..+..|+||++.|.+. ..+.+++|+|.||..||..|+.....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3578899999998543 34677899999999999999999999999998874
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.5e-12 Score=98.15 Aligned_cols=49 Identities=33% Similarity=0.708 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
.+.+..|+||++.|.+ +.+++|+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4457789999999944 667899999999999999999899999999986
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=96.24 Aligned_cols=53 Identities=30% Similarity=0.642 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCC----CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~----d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..++..|+||++.|.+. ..+.+++|+|.||..||..|+..+..||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34578899999998541 223778999999999999999999999999998764
No 14
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=104.63 Aligned_cols=61 Identities=23% Similarity=0.585 Sum_probs=49.2
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleav 93 (385)
++..|+||++.|. ++..+++|+|.||..||..|+..+..||+||..+...+...+..+..+
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ 81 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDEL 81 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHH
Confidence 3678999999994 333444999999999999999998999999999987666655555443
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.24 E-value=6.7e-12 Score=104.16 Aligned_cols=54 Identities=33% Similarity=0.679 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCC---------------CceeeccCCcccHHHHHHHHh-----cCCCCCCccccCCCC
Q 016675 29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPISLK 82 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d---------------~~~vl~CgH~FC~~CI~~WLq-----~s~sCPvCR~~l~~k 82 (385)
...+..|+||++.|.... ...+++|+|.||..||..|+. .+..||+||..+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345679999999985421 123689999999999999994 467899999988654
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.8e-12 Score=96.58 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
..++..|+||++.|.+ +.+++|+|.||..||..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4557899999999844 5777999999999999999999999999998864
No 17
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.2e-12 Score=98.82 Aligned_cols=53 Identities=28% Similarity=0.695 Sum_probs=42.2
Q ss_pred CCCcccccccccccC-----------CCCc-eeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 30 SCDDACSICLEEFSE-----------SDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 30 eeD~~CpICLe~f~~-----------~d~~-~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
.+++.|+||++.|.+ ++.+ .+++|+|.||..||..|+..+.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 357779999988843 2223 4446999999999999999999999999988654
No 18
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.21 E-value=9.7e-12 Score=99.46 Aligned_cols=61 Identities=21% Similarity=0.458 Sum_probs=47.0
Q ss_pred CCCcccccccccccCCCCceeec-cCCcccHHHHHHHHhcC--CCCCCccccC-CCCCcchHHHHHHH
Q 016675 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELLEAV 93 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~-CgH~FC~~CI~~WLq~s--~sCPvCR~~l-~~kd~~s~elleav 93 (385)
.+++.|+||++.|.+ +.+++ |+|.||..||..|+... ..||+||..+ ...++..+..+..+
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHH
Confidence 457899999999943 56678 99999999999999754 5899999997 44455555554443
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=3.5e-12 Score=110.12 Aligned_cols=50 Identities=36% Similarity=0.810 Sum_probs=44.0
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
+++.|+||++.|.+ +++++|+|.||..||..|+..+..||+||+.+....
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 36789999999944 677899999999999999999999999999987654
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=8.2e-12 Score=105.57 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=49.0
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCC-CCcchHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAVE 94 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~-kd~~s~elleave 94 (385)
++..|+||++.|.+ +..++|+|.||..||..|+... ..||+||..+.. .++..+..+..+.
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 113 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVL 113 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence 36789999999943 6677999999999999999854 489999999987 5566665555544
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=94.81 Aligned_cols=51 Identities=24% Similarity=0.649 Sum_probs=43.2
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHh---cCCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq---~s~sCPvCR~~l~~kd 83 (385)
.++..|+||++.|.+ +.+++|+|.||..||..|+. ....||+||+.+...+
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 457899999999843 66779999999999999997 3568999999987654
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20 E-value=6.7e-12 Score=94.86 Aligned_cols=50 Identities=32% Similarity=0.848 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
+.+..|+||++.+ .++...++|+|.||..||..|+..+..||+||..+..
T Consensus 3 ~~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3577899999998 4456788999999999999999999999999998764
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.19 E-value=7.5e-12 Score=92.87 Aligned_cols=54 Identities=30% Similarity=0.636 Sum_probs=45.4
Q ss_pred CCcccccccccccC----CCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 31 CDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 31 eD~~CpICLe~f~~----~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
++..|+||++.|.+ ...+.+++|+|.||..||..|+..+..||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 46789999999853 1234778999999999999999999999999999887653
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=9.9e-12 Score=102.65 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
++..|+||++.|. +++.+++|+|.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4789999999994 3444449999999999999999999999999998865
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=97.22 Aligned_cols=54 Identities=26% Similarity=0.583 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCCC-ceeeccCCcccHHHHHHHHhcC---CCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~-~~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~~l~~kd 83 (385)
.++..|+||++.|.+.+. +.+++|+|.||..||..|+... ..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 347889999999965442 6778999999999999999876 78999999887653
No 26
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.18 E-value=1.5e-11 Score=98.40 Aligned_cols=61 Identities=8% Similarity=-0.058 Sum_probs=52.1
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE 94 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleave 94 (385)
+++.|+||++.|.+ +.+++|||.||..||..|+..+..||+|+..+...++.++..+..+.
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i 73 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQI 73 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHH
Confidence 48899999999954 67778999999999999999889999999999988877776554443
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=92.87 Aligned_cols=51 Identities=22% Similarity=0.460 Sum_probs=42.6
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvCR~~l~~kd 83 (385)
.++..|+||++.+.+ +..++|+|.||..||..|+. ....||+||..+..++
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 347899999999943 45579999999999999995 5678999999987654
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=95.90 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=42.3
Q ss_pred CCCcccccccccccCCCCceeec-cCCcccHHHHHHHHhcC--CCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~-CgH~FC~~CI~~WLq~s--~sCPvCR~~l~~kd 83 (385)
.++..|+||++.|. + +.+++ |+|.||..||..|+..+ ..||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMT--D-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCT--T-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHh--C-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34789999999994 3 55678 99999999999999865 68999999866544
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=1.7e-11 Score=95.45 Aligned_cols=50 Identities=28% Similarity=0.708 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc------CCCCCCccccCCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~------s~sCPvCR~~l~~kd 83 (385)
++..|+||++.|.+ +.+++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 47899999999943 557899999999999999987 668999999987654
No 30
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=3.6e-11 Score=99.40 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=54.2
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
.+++.||||++.|.+ +.+++|||.||..||..|+..+..||+|+.++...++.++..+......
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 90 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQA 90 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHH
T ss_pred cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHH
Confidence 348899999999954 6777899999999999999988899999999998888877766554443
No 31
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=2.6e-11 Score=99.89 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=54.2
Q ss_pred CCCcccccccccccCCCCceeeccC-CcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~Cg-H~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
.+++.|+||++.|.+ +++++|+ |.||..||..|+..+..||+|+.++...++.++..+..+...
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR 84 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHH
Confidence 348899999999954 6778999 999999999999988899999999998888877666554443
No 32
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.15 E-value=2.2e-11 Score=102.02 Aligned_cols=53 Identities=23% Similarity=0.609 Sum_probs=44.0
Q ss_pred CCCcccccccccccCC---------------CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 30 SCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 30 eeD~~CpICLe~f~~~---------------d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
.+++.|+||++.|... ..+.+++|+|.||..||..|+..+.+||+||+.+..+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 3578899999998542 1246689999999999999999999999999987543
No 33
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.14 E-value=3.2e-11 Score=106.25 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=50.2
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCC-CCCCccccCCCC-CcchHHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVEQ 95 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~-sCPvCR~~l~~k-d~~s~elleave~ 95 (385)
++..|+||++.|.+ +.+++|+|.||..||..|+.... .||+||..+... .+..+..+..+..
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 46799999999944 66689999999999999998754 899999999877 5666655555444
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=94.80 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc------CCCCCCccccCCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKD 83 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~------s~sCPvCR~~l~~kd 83 (385)
++..|+||++.|.+ +.+++|+|.||..||..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 47899999999943 566799999999999999987 678999999988654
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.13 E-value=7.7e-12 Score=96.87 Aligned_cols=51 Identities=27% Similarity=0.599 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-------CCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-------s~sCPvCR~~l~~kd 83 (385)
.++..|+||++.|.+ +.+++|+|.||..||..|+.. ...||+||..+...+
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 347899999999943 556799999999999999986 568999999987654
No 36
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=94.27 Aligned_cols=50 Identities=24% Similarity=0.820 Sum_probs=43.8
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
.++..|+||++.+.+ .+++|+|.||..||..|+.....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 457899999999833 67899999999999999999999999999887654
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.10 E-value=2.9e-11 Score=106.98 Aligned_cols=62 Identities=23% Similarity=0.585 Sum_probs=46.7
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCC-CcchHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK-DATSQELLEAVE 94 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~k-d~~s~elleave 94 (385)
++..|+||++.|. +++.+++|+|.||..||..|+.. ...||+||..+... .+..+..+..+.
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i 116 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALI 116 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHH
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHH
Confidence 4668999999994 44444599999999999999997 67899999998643 334444444433
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.1e-11 Score=88.17 Aligned_cols=43 Identities=28% Similarity=0.783 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHh---cCCCCCCc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq---~s~sCPvC 75 (385)
.++..|+||++.|.+ +.+++|+|.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457899999999943 56679999999999999998 45689998
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=2.9e-11 Score=99.52 Aligned_cols=50 Identities=36% Similarity=0.707 Sum_probs=42.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC---CCCCCccccCCCCCc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKDA 84 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s---~sCPvCR~~l~~kd~ 84 (385)
+..|+||++.|.+ +..++|+|.||..||..|+... ..||+||..+...+.
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 6689999999843 5567999999999999999865 389999998876543
No 40
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.05 E-value=6.4e-11 Score=99.48 Aligned_cols=66 Identities=18% Similarity=0.391 Sum_probs=51.8
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCC-CCCCccccCCCCCcchHHHHHHHHHhhh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEAVEQERS 98 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~-sCPvCR~~l~~kd~~s~elleave~er~ 98 (385)
+++..|+||++.|.+ +..++|+|.||..||..|+.... .||+||..+...+......+........
T Consensus 16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 347899999999943 56779999999999999998765 9999999998876655555555444433
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=1.2e-10 Score=87.53 Aligned_cols=54 Identities=24% Similarity=0.546 Sum_probs=42.2
Q ss_pred CCcccccccc-cccCCC-CceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCCc
Q 016675 31 CDDACSICLE-EFSESD-PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (385)
Q Consensus 31 eD~~CpICLe-~f~~~d-~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd~ 84 (385)
++..|+||++ .|.+.. ...+++|||.||..||..|+.. ...||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3678999999 774421 1245799999999999999765 4679999999887654
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=9.2e-11 Score=98.28 Aligned_cols=54 Identities=31% Similarity=0.666 Sum_probs=45.6
Q ss_pred CCCcccccccccccC----CCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~----~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
.++..|+||++.|.+ +..+.+++|+|.||..||..|+..+..||+||+.+...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 457899999999854 122378899999999999999999999999999987654
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=5.4e-11 Score=99.78 Aligned_cols=58 Identities=24% Similarity=0.577 Sum_probs=47.0
Q ss_pred CCcccccccccccCCCCceee-ccCCcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl-~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleav 93 (385)
++..|+||++.|. + +.++ +|+|.||..||..|+. ..||+||..+...++..+..+..+
T Consensus 21 ~~~~C~IC~~~~~--~-pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 21 KLLRCSRCTNILR--E-PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp HTTSCSSSCSCCS--S-CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred hCCCCCCCChHhh--C-ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHH
Confidence 3789999999993 4 4555 9999999999999998 789999999987777665544443
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01 E-value=4.4e-11 Score=99.63 Aligned_cols=50 Identities=26% Similarity=0.619 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~ 81 (385)
..+++.|+||++.|.+ ++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3457899999999943 566799999999999999976 5689999998864
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=1.5e-10 Score=108.23 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
...++.|+||++.|.+ |++++|||.||..||..|+... ..||+|+.++...++.++..+..+...
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~ 270 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDA 270 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHH
Confidence 4468899999999944 6777999999999999999864 459999999998888877666555443
No 46
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.00 E-value=4.2e-11 Score=102.21 Aligned_cols=53 Identities=23% Similarity=0.609 Sum_probs=1.5
Q ss_pred CCCcccccccccccCC---------------CCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 30 SCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 30 eeD~~CpICLe~f~~~---------------d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
..++.|+||++.|... ..+..++|+|.||..||..|+..+.+||+||+.+..+
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 3467999999998531 1233469999999999999999999999999987543
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=84.19 Aligned_cols=43 Identities=35% Similarity=1.002 Sum_probs=35.9
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHh---cCCCCCCc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq---~s~sCPvC 75 (385)
.++..|+||++.|.+ +.+++|+|.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 347899999999944 56679999999999999954 45789998
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=93.39 Aligned_cols=64 Identities=22% Similarity=0.439 Sum_probs=51.0
Q ss_pred CCCcccccccccccCCCCceee-ccCCcccHHHHHHHHhcC------CCCCC--cccc-CCCCCcchHHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVEQE 96 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl-~CgH~FC~~CI~~WLq~s------~sCPv--CR~~-l~~kd~~s~elleave~e 96 (385)
.+++.||||++.|.+ ++++ .|||.||..||..|+..+ ..||+ |+.. +...++.++..+..+...
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN 78 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence 347899999999944 5666 499999999999999764 48999 9887 777888777766655544
No 49
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.6e-10 Score=90.87 Aligned_cols=55 Identities=31% Similarity=0.696 Sum_probs=45.1
Q ss_pred CCCCCCcccccccccccCCCCceeeccC-----CcccHHHHHHHHhcC--CCCCCccccCCCC
Q 016675 27 IQDSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~~~vl~Cg-----H~FC~~CI~~WLq~s--~sCPvCR~~l~~k 82 (385)
..++++..|.||++.|..+++. +++|. |.||..||.+|+..+ ..||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 3455678999999998665554 68996 999999999999875 4899999988754
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.94 E-value=3.1e-10 Score=94.61 Aligned_cols=51 Identities=33% Similarity=0.611 Sum_probs=43.9
Q ss_pred CCcccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCCCCc
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd~ 84 (385)
++..|+||++.|.+ +..++|+|.||..||..|+.. ...||+||..+...+.
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 36789999999943 566899999999999999987 6789999999887654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.93 E-value=6.9e-10 Score=87.89 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=41.8
Q ss_pred CCCcccccccccccCCCCceeec--cCCcccHHHHHHHHhc-CCCCCCccccCCCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTS--CKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~--CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~kd 83 (385)
+++..|+||++.+...+ +.+++ |||.||..||..|+.. ...||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45789999999884423 34444 9999999999998854 568999999988654
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=5.9e-10 Score=93.32 Aligned_cols=57 Identities=30% Similarity=0.608 Sum_probs=47.3
Q ss_pred CCCCCcccccccccccC----CCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCCc
Q 016675 28 QDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~----~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~ 84 (385)
.++++..|+||++.|.. ......++|+|.||..||.+|+...+.||+||..+..++.
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 35668899999999853 1223778999999999999999999999999999886653
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=4.3e-10 Score=82.89 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
+.++..|+||++.|.+ +.+++|+|.||..||..| ...||+||+.+...+
T Consensus 3 e~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp SCCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred cccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4568899999999944 577899999999999773 568999999887643
No 54
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.86 E-value=2.5e-09 Score=97.45 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
..++.||||++.|.+ |++++|||.||..||..|+... .+||+|+.++...++.++..+..+...
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDA 168 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHH
Confidence 458999999999944 6777999999999999999864 469999999998888877766555443
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.85 E-value=6.1e-10 Score=97.15 Aligned_cols=49 Identities=16% Similarity=0.402 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcCC-CCCCccccCCC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~-sCPvCR~~l~~ 81 (385)
+++..|+||++.|.+ +..++|+|.||..||..|+.... .||+||..+..
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 348899999999944 56689999999999999998664 89999997654
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.83 E-value=2e-09 Score=81.66 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCCCceee--ccCCc-ccHHHHHHHHhcCCCCCCccccCC
Q 016675 29 DSCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl--~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
.+++..|.||++.+.+ +.++ +|+|. ||..|+..|+..+..||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4467789999999844 4555 99999 899999999998899999999875
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=96.26 Aligned_cols=64 Identities=19% Similarity=0.418 Sum_probs=50.3
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC-CCCCCccccCCCCCcchHHHHHHHHHh
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQE 96 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s-~sCPvCR~~l~~kd~~s~elleave~e 96 (385)
++++.|+||++.|.+ +..++|+|.||..||..|+... ..||+||..+...+......+......
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~ 80 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS 80 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT
T ss_pred CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhh
Confidence 348899999999943 5668999999999999999864 489999999987765555555444443
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=3.6e-09 Score=83.43 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=41.9
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcC--CCCCCccccCCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~~l~~kd 83 (385)
...|.||++.|..+ .....|+|.||..||..|++.+ .+||+|+..+...+
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 46899999999654 3344899999999999999887 78999999987654
No 59
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2e-09 Score=103.28 Aligned_cols=63 Identities=22% Similarity=0.484 Sum_probs=51.9
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC--CCCCC--ccccCCCCCcchHHHHHHHH
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVE 94 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s--~sCPv--CR~~l~~kd~~s~elleave 94 (385)
..+..||||++.| .+|++.+.|||.||..||..|+..+ ..||+ |++.+...++.++..+..+.
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv 245 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC 245 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence 3488999999999 5566556999999999999999864 47999 99999988888777665443
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.75 E-value=1.6e-09 Score=84.11 Aligned_cols=44 Identities=27% Similarity=0.677 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
++..|+||++.+.+ +.+++|+|. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 36789999999844 677899999 999999998 889999998764
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=5.2e-09 Score=105.45 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=42.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHh-cCCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-~s~sCPvCR~~l~~k 82 (385)
+..|+||++.+.+ +.+++|+|.||..||..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4789999999844 77889999999999999998 678999999988754
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=5.6e-09 Score=78.93 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCCCceee--ccCCc-ccHHHHHHHHhcCCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl--~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+.+..|.||++.+.+ ..++ +|+|. ||..|+..|+.....||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 346789999998743 4455 99998 999999999988889999999875
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.2e-08 Score=79.22 Aligned_cols=45 Identities=29% Similarity=0.698 Sum_probs=37.1
Q ss_pred CCcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
++..|+||++.+.+ +.+++|+|. ||..|+.. ...||+||..+...
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 36789999999844 677899999 99999954 37899999988653
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=7.6e-08 Score=73.96 Aligned_cols=47 Identities=26% Similarity=0.565 Sum_probs=39.0
Q ss_pred CCCCCcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCCC
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
.++++..|.||++.+.+ +.+++|+|. ||..|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34557889999998744 778899999 99999973 4789999998865
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.47 E-value=5.5e-08 Score=73.50 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=43.5
Q ss_pred CcccccccccccCCCCceee-ccCCcccHHHHHHHHhcCCCCCCccccCCCCCcc
Q 016675 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl-~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~ 85 (385)
.+.|+||++.+.+ +.++ +|||.|+..||.+|+..+..||++++++...++.
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 4689999999943 5666 8999999999999999888899999999876653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.43 E-value=4e-08 Score=77.54 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=37.0
Q ss_pred CcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
+..|+||++.+.+ +.+++|+|. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 5689999999844 777899999 999999877 389999998764
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=7.1e-08 Score=77.69 Aligned_cols=49 Identities=24% Similarity=0.655 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc--------CCCCCC--cccc
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP 78 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~--------s~sCPv--CR~~ 78 (385)
.++.+|+||++.+.......+++|+|.||..||..|+.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 347789999999844222233479999999999999863 136999 9987
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.30 E-value=1e-07 Score=94.58 Aligned_cols=44 Identities=20% Similarity=0.586 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCCceeeccCCc-ccHHHHHHHHhcCCCCCCccccCCC
Q 016675 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~vl~CgH~-FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
++..|+||++.+.+ +..++|+|. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 46899999999844 677899999 999999988 789999998764
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.29 E-value=5.2e-07 Score=67.98 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=40.0
Q ss_pred CCCCCcccccccccccCCCCceeeccC--C---cccHHHHHHHHhc--CCCCCCccccCCC
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL 81 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~Cg--H---~FC~~CI~~WLq~--s~sCPvCR~~l~~ 81 (385)
+++++..|.||++.. +++ .++||. + .||..||..|+.. +..||+|+..+..
T Consensus 2 e~~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TTCSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456788999999975 333 357865 4 9999999999975 5689999998764
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.24 E-value=2.1e-07 Score=92.52 Aligned_cols=54 Identities=26% Similarity=0.593 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCC-Cc----eeeccCCcccHHHHHHHHhcC-----------CCCCCccccCCCC
Q 016675 29 DSCDDACSICLEEFSESD-PS----TVTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK 82 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~----~vl~CgH~FC~~CI~~WLq~s-----------~sCPvCR~~l~~k 82 (385)
++...+|+||++.+.++. -+ ..+.|+|.||..||.+|+... ..||+||+++...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 445778999999986522 22 124899999999999999752 3699999988743
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.83 E-value=8.9e-06 Score=67.50 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=38.4
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhc-CCCCCCccccCCC
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-s~sCPvCR~~l~~ 81 (385)
.|++|--.+ ....++.||+|.||.+|+..|... .+.||.|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 488898887 334678899999999999999854 6889999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.34 E-value=0.00013 Score=68.91 Aligned_cols=51 Identities=24% Similarity=0.574 Sum_probs=40.9
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCC--CCCCccccCCCCCc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQPISLKDA 84 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~--sCPvCR~~l~~kd~ 84 (385)
-..|.||.+.+..+ .....|+|.||..|+..|+..+. .||.|+..|....+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 56799999998553 33445999999999999998654 89999998876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.16 E-value=0.0015 Score=53.62 Aligned_cols=46 Identities=28% Similarity=0.639 Sum_probs=37.9
Q ss_pred CcccccccccccCCCCceeecc-CCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~C-gH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
-..|-.|+-... .+..| .|.+|+.||...+..+..||+|+.+|..+
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 457999997752 23455 59999999999999999999999999875
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.12 E-value=0.0099 Score=47.71 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCcccccccccccCCCCcee--eccCCcccHHHHHHHH
Q 016675 31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWC 66 (385)
Q Consensus 31 eD~~CpICLe~f~~~d~~~v--l~CgH~FC~~CI~~WL 66 (385)
++..|+||++.+.. + ++. +.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~~~-~-av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ-D-AVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCC-B-CCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCC-C-ceEECCcCChHHhHHHCHHHh
Confidence 47899999976422 2 333 8999999999999843
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.75 E-value=0.14 Score=56.92 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCCcccccccccccCCCCceeeccC-CcccHHHHHHHHhcCCCCCCccccCCCCCcchHHHHHHH
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~Cg-H~FC~~CI~~WLq~s~sCPvCR~~l~~kd~~s~elleav 93 (385)
.++..|||-++.+.+ |++++.| +.|-..+|..|+..+.+||+=|+++...++.++..+...
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~ 950 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQK 950 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHH
Confidence 457889999999944 6677887 699999999999999999999999998888777655443
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.70 E-value=0.22 Score=37.81 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=36.7
Q ss_pred hhccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCccccC
Q 016675 23 VEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (385)
Q Consensus 23 ve~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR~~l 79 (385)
++++.....+..|.||.+. ++-+.--.|...||..|+...+... -.||.|....
T Consensus 3 ~E~~~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 3 MEGQQNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTTTCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cccccCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3444445556789999864 3323335788999999998777653 3699997543
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.76 E-value=0.34 Score=48.48 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=44.6
Q ss_pred CcccccccccccCCCCceeeccCCcccHHH--HHHHHhcC--CCCCCccccCCCCCcchHHHHHHHHH
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQC--VLEWCQRS--SQCPMCWQPISLKDATSQELLEAVEQ 95 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~C--I~~WLq~s--~sCPvCR~~l~~kd~~s~elleave~ 95 (385)
.+.|||-+..+ ..|.+-..|.|.-|++- +....... -.||+|.+.+...++.....+..+..
T Consensus 249 SL~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 46799888877 55677789999955543 44433333 46999999999999888777766543
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.34 E-value=0.45 Score=47.40 Aligned_cols=62 Identities=15% Similarity=0.314 Sum_probs=44.5
Q ss_pred CcccccccccccCCCCceeeccCCcccHH--HHHHHHhcC--CCCCCccccCCCCCcchHHHHHHHHH
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQ--CVLEWCQRS--SQCPMCWQPISLKDATSQELLEAVEQ 95 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~--CI~~WLq~s--~sCPvCR~~l~~kd~~s~elleave~ 95 (385)
.+.|||-+..+ ..|.+...|.|.-|++ -+..+.... -.||+|.+.+...++.....+..+..
T Consensus 215 SL~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 215 SLMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp ESBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 45699888877 5567778999995544 344444333 46999999999999888777766553
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.95 E-value=0.23 Score=36.83 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCCCCc-eeeccCCcccHHHHHHHHh-----cCCCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~WLq-----~s~sCPvCR~~ 78 (385)
++++..|+||...+.++... .--.|...||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45677899999887432222 2246889999999753221 34679999653
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.22 E-value=0.84 Score=33.82 Aligned_cols=50 Identities=20% Similarity=0.598 Sum_probs=34.0
Q ss_pred ccCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCccc
Q 016675 25 GGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 25 ~~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
..+.+..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 4 ~~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34556778899999874 222222468889999999875433 236999964
No 81
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=76.95 E-value=2.3 Score=34.04 Aligned_cols=37 Identities=27% Similarity=0.630 Sum_probs=28.2
Q ss_pred CCCCcccccccccccCCCCceeecc----CCcccHHHHHHHHhc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQR 68 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~C----gH~FC~~CI~~WLq~ 68 (385)
+...+.|.+|.+-+.+. ....| .|.||+.|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdt---HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDT---HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSST---TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccC---ceeeCCCccCCeeeccccHHHHHh
Confidence 34567899999999552 23345 599999999998875
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=73.39 E-value=0.69 Score=41.10 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCccccC
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR~~l 79 (385)
..++.|.||.+. ++-+..-.|...||..|+...+... -.||.|+...
T Consensus 2 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 357789999865 3323334688999999987655432 3699997654
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.36 E-value=0.82 Score=34.87 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCCc-eeeccCCcccHHHHHHHHhc----CCCCCCccccCC
Q 016675 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPIS 80 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~~l~ 80 (385)
++...|.||..... +..+ .--.|...||..|+..-... ...||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34556999987642 1112 22368899999998654432 346999976543
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.36 E-value=6.2 Score=31.97 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=37.1
Q ss_pred CCCCCCcccccccccccCC---CC-ceeeccCCcccHHHHH-HHHhcCCCCCCccccCC
Q 016675 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~---d~-~~vl~CgH~FC~~CI~-~WLq~s~sCPvCR~~l~ 80 (385)
++......|.||-+.+... +. +..-.|.--.|..|+. ++...++.||-|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3444556899999986422 11 2234678889999985 44456788999988765
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=69.92 E-value=0.61 Score=35.01 Aligned_cols=50 Identities=22% Similarity=0.624 Sum_probs=33.3
Q ss_pred cCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCcccc
Q 016675 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~~ 78 (385)
+..+..+..|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|...
T Consensus 2 ~~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 2 AMAQKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCCSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CcCCCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4456678899999974 222333478889999998754432 2359988543
No 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.98 E-value=1.7 Score=35.01 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=35.2
Q ss_pred cCCCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCccccCC
Q 016675 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPIS 80 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR~~l~ 80 (385)
...+..+..|.||.+. ++-+.--.|.-.||..|+.+=+..- -.||.|...-.
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3456678899999975 2323334677899999997655432 36999975433
No 87
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=67.84 E-value=0.68 Score=42.00 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCccccC
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR~~l 79 (385)
+..++.|.||... ++-+..-.|...||..|+...+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4557789999864 2212223688999999987665432 3699997643
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=66.73 E-value=1.1 Score=33.21 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~~ 78 (385)
+..+..|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4567889999863 222333468889999998754433 2359999654
No 89
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.66 E-value=1.7 Score=33.57 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=32.8
Q ss_pred hccCCCCCCcccccccccccCCCCcee--e--ccCCcccHHHHHHHH---------hcCCCCCCcccc
Q 016675 24 EGGIQDSCDDACSICLEEFSESDPSTV--T--SCKHEFHLQCVLEWC---------QRSSQCPMCWQP 78 (385)
Q Consensus 24 e~~iqdeeD~~CpICLe~f~~~d~~~v--l--~CgH~FC~~CI~~WL---------q~s~sCPvCR~~ 78 (385)
+..+..++...| ||-.....+ ..+ - .|...||..|+.--. .....||.|+..
T Consensus 8 dd~~~~~~~~~C-iC~~~~~~g--~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 8 EDPFQPEIKVRC-VCGNSLETD--SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCSSSCCCCCCC-SSCCCCCCS--CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccccCCCCCEEe-ECCCcCCCC--CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 334455567778 899874222 233 2 688999999984321 124679999654
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.52 E-value=2 Score=34.95 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCcc
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR 76 (385)
.+..++.|.||.+.-...+-+.-..|...||..||...+.. .-.||.|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 34568899999876311111333678899999999766542 22466553
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.05 E-value=4.2 Score=31.32 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCCcccccccccccCCCCc-eeeccCCcccHHHHHHHHh-----cCCCCCCccccC
Q 016675 29 DSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPI 79 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~-~vl~CgH~FC~~CI~~WLq-----~s~sCPvCR~~l 79 (385)
+.+...| ||...+.+.... ..-.|...||..|+.--.. ....||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3445566 998876322222 2246889999999842111 346799997653
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=61.61 E-value=1.5 Score=38.30 Aligned_cols=51 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred cCCCCCCcccccccccccCCCC-ceeeccCCcccHHHHHHHH-----hcCCCCCCccc
Q 016675 26 GIQDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWC-----QRSSQCPMCWQ 77 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~d~-~~vl~CgH~FC~~CI~~WL-----q~s~sCPvCR~ 77 (385)
.+.++++..| ||.....++.. +..-.|...||..|+.--. .....||.|+.
T Consensus 2 ~~~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 2 PLGSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -----CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 3455667889 99987532221 1224688899999984211 12467999965
No 93
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.19 E-value=2.2 Score=32.58 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHH---------HhcCCCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW---------CQRSSQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~W---------Lq~s~sCPvCR~~ 78 (385)
+.....| ||......+.-+.--.|...||..|+.-- ......||.|+..
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3345667 89887632111122468899999998421 1246789999654
No 94
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.97 E-value=4.3 Score=32.70 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=29.8
Q ss_pred cCCCCCCcccccccccccCCCCceeec--cC-CcccHHHHHHHHhc----CCCCCCccccC
Q 016675 26 GIQDSCDDACSICLEEFSESDPSTVTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~d~~~vl~--Cg-H~FC~~CI~~WLq~----s~sCPvCR~~l 79 (385)
.+...++..| ||..... +.-+..-. |. ..||..|+. |.. ...||.|+...
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3445556677 9998641 21111123 55 689999986 322 34799997643
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=60.83 E-value=1.8 Score=39.02 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=32.4
Q ss_pred cccccccccccCCCC--cee--eccCCcccHHHHHH------HHh-----cCCCCCCccccCC
Q 016675 33 DACSICLEEFSESDP--STV--TSCKHEFHLQCVLE------WCQ-----RSSQCPMCWQPIS 80 (385)
Q Consensus 33 ~~CpICLe~f~~~d~--~~v--l~CgH~FC~~CI~~------WLq-----~s~sCPvCR~~l~ 80 (385)
..|+||...+.+++. ..+ -.|...||..|+.- -+. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 469999998865442 122 46889999999632 121 2578999977543
No 96
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.41 E-value=4.2 Score=28.49 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=27.3
Q ss_pred ccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCccc
Q 016675 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
.|.||...-..++-+.--.|...||..|+..=+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888865311122222478899999999654432 235999964
No 97
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.91 E-value=3.1 Score=31.06 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=29.2
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvC 75 (385)
..|-.|+..|.+.....-..|++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999988432112346899999999953333344679988
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=56.41 E-value=2.6 Score=34.03 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=27.6
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc---CCCCCCccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~---s~sCPvCR~ 77 (385)
...| ||......+.-+.--.|...||..|+..-+.. ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 89776533221222468899999998543222 357999964
No 99
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.54 E-value=1 Score=32.61 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=29.6
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhcC----CCCCCcc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCW 76 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR 76 (385)
+..+..|.||.+. ++-+.--.|...||..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4457889999974 2223335788899999987544322 2477774
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.13 E-value=9.5 Score=33.12 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=32.0
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHh-----------cCCCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-----------RSSQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq-----------~s~sCPvCR~ 77 (385)
|..++.|.||.+-- +-+---.|-..||..||..-+. ..-.||+|..
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 55678999999752 2222247889999999986552 1236999964
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.16 E-value=6.3 Score=30.04 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=29.6
Q ss_pred cCCCCCCcccccccccccCCCCcee-ec--cC-CcccHHHHHHHHhc----CCCCCCccccC
Q 016675 26 GIQDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (385)
Q Consensus 26 ~iqdeeD~~CpICLe~f~~~d~~~v-l~--Cg-H~FC~~CI~~WLq~----s~sCPvCR~~l 79 (385)
.+...++..| ||..... + .++. -. |. ..||..|+. |.. .-.||.|+...
T Consensus 10 ~~d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCTTSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccCCCCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3445566778 8988641 2 1111 13 55 589999986 332 34699996643
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.48 E-value=3.3 Score=32.87 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCCC-C-ceeeccCCcccHHHHHHHHh--cCCCCCCccccCCCCC
Q 016675 29 DSCDDACSICLEEFSESD-P-STVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLKD 83 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~-~~vl~CgH~FC~~CI~~WLq--~s~sCPvCR~~l~~kd 83 (385)
.+.+..|.||...-.... . +.--.|.-.||..|+..-+. ..-.||.|......++
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 456788999997531111 1 12236778999999865322 1236999976555443
No 103
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=50.14 E-value=2 Score=31.46 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
|..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 2 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 2 MIHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 3457889999874 222333578889999998754432 225888854
No 104
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=50.09 E-value=9.9 Score=28.47 Aligned_cols=34 Identities=26% Similarity=0.604 Sum_probs=22.3
Q ss_pred CCCCcccccccccccCCCCcee-e-ccCCcccHHHH
Q 016675 29 DSCDDACSICLEEFSESDPSTV-T-SCKHEFHLQCV 62 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v-l-~CgH~FC~~CI 62 (385)
++....|++|...+.++...+. - .|.-.||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3446679999998754433322 3 78899999996
No 105
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=48.34 E-value=3.6 Score=36.94 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=30.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCcccc
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~~ 78 (385)
++.|.+|.+. ++-+..-.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5679999965 232333468889999998654432 2359999764
No 106
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.22 E-value=9.2 Score=29.27 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCCCCcccccccccccCCCCceeecc-CCcccHHHHHHH
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEW 65 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~C-gH~FC~~CI~~W 65 (385)
.+++..-|.||.+.- .+..+.| +-.||..|+.+.
T Consensus 4 ~~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 455667799999873 2566788 789999997764
No 107
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=47.16 E-value=18 Score=29.04 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCCcccccccccccCCCCceeeccCCcccHHHHHHH
Q 016675 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~W 65 (385)
..|..|.||-..- ..+..-.--|+-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 3588999998432 1111112247899999999986
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.37 E-value=1.6 Score=34.95 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=30.5
Q ss_pred CCCCCcccccccccccCCCCceeeccCCcccHHHHHHHHhc----CCCCCCccc
Q 016675 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
+..++..|.||...-....-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44557789999976321111222368889999998643332 225888844
No 109
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.34 E-value=12 Score=29.09 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCCCCcccccccccccCCC-CceeeccCCcccHHHHHH
Q 016675 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~ 64 (385)
.|.+-..|.+|...|..-. ...--.||+.||..|...
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3555678999999984322 234468999999999643
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=42.85 E-value=12 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCCCcccccccccccCCC-CceeeccCCcccHHHHHHH
Q 016675 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~W 65 (385)
+.+-..|.+|...|.... ...-..||+.||..|...+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 444567999999884321 2344689999999996543
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.23 E-value=11 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCCCcccccccccccCCC-CceeeccCCcccHHHHH
Q 016675 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~ 63 (385)
|.+-..|.+|...|.... ....-.||+.||..|..
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 444567999999984321 23446899999999954
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.58 E-value=13 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=24.5
Q ss_pred CCCCCcccccccccccCCC-CceeeccCCcccHHHH
Q 016675 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCV 62 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI 62 (385)
.|++-..|.+|...|..-. ...--.||.+||..|.
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3455568999999984321 2334689999999884
No 113
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=41.40 E-value=12 Score=28.98 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=25.7
Q ss_pred CCCCCcccccccccccCCC-CceeeccCCcccHHHHHH
Q 016675 28 QDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~ 64 (385)
.|.+-..|.+|...|.... ...--.||..||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3445568999999985321 223468999999999643
No 114
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=40.38 E-value=8.1 Score=27.39 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=26.9
Q ss_pred ccccccccccCCCCcee-e-ccCCcccHHHHHHH----HhcCCCCCCcc
Q 016675 34 ACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEW----CQRSSQCPMCW 76 (385)
Q Consensus 34 ~CpICLe~f~~~d~~~v-l-~CgH~FC~~CI~~W----Lq~s~sCPvCR 76 (385)
.|.||...+.++...+. - .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57789888743332222 3 57789999996421 13567899885
No 115
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=39.49 E-value=11 Score=27.72 Aligned_cols=50 Identities=26% Similarity=0.577 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCCCCcee--eccCCcccHHHHHHHHh-------cCCCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWCQ-------RSSQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v--l~CgH~FC~~CI~~WLq-------~s~sCPvCR~~ 78 (385)
+..+..|.||...........+ -.|...||..|+..-+. ..-.|+.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3457889999976422111222 47888999999875321 23468888654
No 116
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.67 E-value=21 Score=30.40 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=29.9
Q ss_pred CCCCcccccccccccCCCCceeeccCCcccHHHHHHHH------h-----cCCCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC------Q-----RSSQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WL------q-----~s~sCPvCR~ 77 (385)
|..++.|.||.+-- +-+---.|-..||..||..-+ . ..-.|++|.-
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44567799999752 111113678999999998642 1 1236999943
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.40 E-value=9.5 Score=32.64 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=24.0
Q ss_pred CCCccccccccccc-CCCC-ceeeccCCcccHHHHH
Q 016675 30 SCDDACSICLEEFS-ESDP-STVTSCKHEFHLQCVL 63 (385)
Q Consensus 30 eeD~~CpICLe~f~-~~d~-~~vl~CgH~FC~~CI~ 63 (385)
..+..|.+|...|. .... .....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 45788999999983 2222 2446889999988843
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=36.93 E-value=3.9 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCCCcccccccccccCCCCcee--eccCCcccHHHHHHHHh---cCCCCCCccc
Q 016675 29 DSCDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWCQ---RSSQCPMCWQ 77 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v--l~CgH~FC~~CI~~WLq---~s~sCPvCR~ 77 (385)
+.+...| ||..... ....+ -.|...||..|+.--.. ....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~--~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA--GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT--TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC--CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4455667 9988652 22222 46889999999753221 2456888854
No 119
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.22 E-value=15 Score=32.18 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCcccccccccccC--CCCceeeccCCcccHHHHHHHHhcC--CCCCCccc
Q 016675 30 SCDDACSICLEEFSE--SDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (385)
Q Consensus 30 eeD~~CpICLe~f~~--~d~~~vl~CgH~FC~~CI~~WLq~s--~sCPvCR~ 77 (385)
..+..|.+|...|.- ........|.|.+|..|-. |+... -.|-+|++
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 357899999998632 2233457899999999962 33222 13767754
No 120
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.03 E-value=28 Score=34.94 Aligned_cols=47 Identities=21% Similarity=0.461 Sum_probs=32.2
Q ss_pred CCCCcccccccccccCCCCceee--ccCCcccHHHHHHHHhc----------CCCCCCcccc
Q 016675 29 DSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR----------SSQCPMCWQP 78 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~vl--~CgH~FC~~CI~~WLq~----------s~sCPvCR~~ 78 (385)
|-.+..|.||-+-- +-...- .|...||..||..++-. .=.|-+|.-.
T Consensus 90 DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 44567899998752 222223 78899999999998732 2369999543
No 121
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.97 E-value=4.6 Score=29.88 Aligned_cols=37 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred cccccccccccCCC---Cceeec--cCCcccHHHHHHHHhcC
Q 016675 33 DACSICLEEFSESD---PSTVTS--CKHEFHLQCVLEWCQRS 69 (385)
Q Consensus 33 ~~CpICLe~f~~~d---~~~vl~--CgH~FC~~CI~~WLq~s 69 (385)
..||-|.-.+...+ .++-.. |++.||..|+..|....
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 46888888774322 223334 88999998888887553
No 122
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=35.69 E-value=33 Score=26.03 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCCCccccccccccc-CCCCc-eeeccCCcccHHHHHHHHh--cCCCCCCccc
Q 016675 28 QDSCDDACSICLEEFS-ESDPS-TVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQ 77 (385)
Q Consensus 28 qdeeD~~CpICLe~f~-~~d~~-~vl~CgH~FC~~CI~~WLq--~s~sCPvCR~ 77 (385)
....+..|.||.+.-. +.+.+ .--.|.-.||..|+..-.. ..-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4556889999987531 11122 2247888999999864321 1235777743
No 123
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=35.41 E-value=40 Score=27.33 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=21.1
Q ss_pred Cccccccccccc------CCCCceeeccCCcccHHHHH
Q 016675 32 DDACSICLEEFS------ESDPSTVTSCKHEFHLQCVL 63 (385)
Q Consensus 32 D~~CpICLe~f~------~~d~~~vl~CgH~FC~~CI~ 63 (385)
...|.+|+..-. .++-+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 457999987521 11223335789999999994
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.32 E-value=7.9 Score=37.97 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCC-CceeeccCCcccHHHHHHHHhc-------CCCCCCccccC
Q 016675 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPI 79 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~WLq~-------s~sCPvCR~~l 79 (385)
+.+...|.+|...|.... ......||+.||..|...++.- ...|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 344568999999884321 2344689999999998655421 23577775544
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=34.02 E-value=14 Score=30.44 Aligned_cols=52 Identities=17% Similarity=0.385 Sum_probs=31.4
Q ss_pred ccCCCCCCcccccccccccCCCCcee-e--ccCCcccHHHHHHHHhcC----CCCCCccccCCCC
Q 016675 25 GGIQDSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQRS----SQCPMCWQPISLK 82 (385)
Q Consensus 25 ~~iqdeeD~~CpICLe~f~~~d~~~v-l--~CgH~FC~~CI~~WLq~s----~sCPvCR~~l~~k 82 (385)
..-++..++.|.||.+. ++ +.. - .|...||..|+. |... -.||.|...+..+
T Consensus 8 ~~~~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 8 TEPKQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp --CCCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCcCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 33455668889999853 21 222 1 477899999986 4332 2588776655544
No 126
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.47 E-value=16 Score=30.07 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.4
Q ss_pred cccHHHHHHHHhc
Q 016675 56 EFHLQCVLEWCQR 68 (385)
Q Consensus 56 ~FC~~CI~~WLq~ 68 (385)
.||..||..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999864
No 127
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.41 E-value=3.2 Score=35.05 Aligned_cols=51 Identities=20% Similarity=0.508 Sum_probs=30.2
Q ss_pred CCCCCcccccccccccCC-CCceeeccCCcccHHHHHHHHhcCCCCCCcccc
Q 016675 28 QDSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~ 78 (385)
-+.+...|.+|...|..- .....-.||..||..|..........|-.|...
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 344567899999988431 123446899999999976555445567777543
No 128
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=32.35 E-value=18 Score=29.41 Aligned_cols=46 Identities=22% Similarity=0.533 Sum_probs=30.3
Q ss_pred cccccccccccCCCCcee-e-ccCCcccHHHHHHH------H----hcCCCCCCcccc
Q 016675 33 DACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEW------C----QRSSQCPMCWQP 78 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~v-l-~CgH~FC~~CI~~W------L----q~s~sCPvCR~~ 78 (385)
..|.||...+.+....+. - .|...||..|+.-- + .....||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 479999998754333333 2 57899999996311 1 034579999764
No 129
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.27 E-value=17 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=11.3
Q ss_pred cccHHHHHHHHhc
Q 016675 56 EFHLQCVLEWCQR 68 (385)
Q Consensus 56 ~FC~~CI~~WLq~ 68 (385)
.||..||..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999863
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.07 E-value=17 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=23.5
Q ss_pred CcccccccccccCC-CCceeeccCCcccHHHHH
Q 016675 32 DDACSICLEEFSES-DPSTVTSCKHEFHLQCVL 63 (385)
Q Consensus 32 D~~CpICLe~f~~~-d~~~vl~CgH~FC~~CI~ 63 (385)
+..|.+|...|..- .....-.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 57899999988432 123446899999998854
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=30.47 E-value=23 Score=26.74 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=22.8
Q ss_pred CcccccccccccCCC-CceeeccCCcccHHHHH
Q 016675 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (385)
Q Consensus 32 D~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~ 63 (385)
+..|.+|...|..-. ...--.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999884321 22336899999999953
No 132
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.93 E-value=24 Score=27.84 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCcccccccccccCCC-CceeeccCCcccHHHHHH
Q 016675 31 CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (385)
Q Consensus 31 eD~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~ 64 (385)
+...|.+|...|..-. ...--.||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3557999999984322 123368999999999643
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=29.79 E-value=12 Score=30.48 Aligned_cols=44 Identities=27% Similarity=0.578 Sum_probs=26.6
Q ss_pred ccccccccccCCCC-ceeeccCCcccHHHHHHHHhcC----CCCCCccc
Q 016675 34 ACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS----SQCPMCWQ 77 (385)
Q Consensus 34 ~CpICLe~f~~~d~-~~vl~CgH~FC~~CI~~WLq~s----~sCPvCR~ 77 (385)
.|.||.+.-.+.+. +.--.|...||..|+..-+..- -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57777764211111 2223688999999986554432 36999974
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.57 E-value=20 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=24.1
Q ss_pred CcccccccccccCCC-CceeeccCCcccHHHHHH
Q 016675 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (385)
Q Consensus 32 D~~CpICLe~f~~~d-~~~vl~CgH~FC~~CI~~ 64 (385)
+..|.+|...|..-. ....-.||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 568999999885321 234468999999999643
No 135
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.49 E-value=35 Score=27.69 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=33.9
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCCC
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~kd 83 (385)
+.|..|...|.+........=+..||..|....+.....|-.|...|...+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 568888877732101223355678999998776655558999988887643
No 136
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=28.12 E-value=6.2 Score=28.98 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=25.1
Q ss_pred CCCCCCcccccccccccCCCCceeec-----cC-CcccHHHHHHHHhc----CCCCCCccc
Q 016675 27 IQDSCDDACSICLEEFSESDPSTVTS-----CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 27 iqdeeD~~CpICLe~f~~~d~~~vl~-----Cg-H~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
+..++...| ||.... .. .++. |. ..||..|+. +.. .-.||.|+.
T Consensus 5 ~d~~e~~~C-~C~~~~--~g--~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVS--YG--EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEEC--CS--EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcC--CC--CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 344556677 998864 11 2333 44 579999986 332 346888854
No 137
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.49 E-value=7.6 Score=37.71 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCcccccccccccCCCCceee------ccCCcccHHHHHHHHhcCCCCCCcccc
Q 016675 30 SCDDACSICLEEFSESDPSTVT------SCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~vl------~CgH~FC~~CI~~WLq~s~sCPvCR~~ 78 (385)
+....||||-...... .+. .=.+.+|.-|-.+|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s---~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG---MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE---EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee---EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5578999999865221 111 112678888999998888899999664
No 138
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.28 E-value=49 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=33.2
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~ 81 (385)
=+.|..|...|..........=+..||..|..+-+.....|..|.+.|..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 46788888777321122333556789999987755444489999888864
No 139
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.02 E-value=10 Score=27.72 Aligned_cols=44 Identities=25% Similarity=0.542 Sum_probs=25.5
Q ss_pred CCCCCcccccccccccCCCCcee--ec--cC-CcccHHHHHHHHhc----CCCCCCccc
Q 016675 28 QDSCDDACSICLEEFSESDPSTV--TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQ 77 (385)
Q Consensus 28 qdeeD~~CpICLe~f~~~d~~~v--l~--Cg-H~FC~~CI~~WLq~----s~sCPvCR~ 77 (385)
..+++..| ||.... .. ..+ -. |. ..||..|+. +.. .-.||.|+.
T Consensus 5 d~~e~~yC-~C~~~~--~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVS--YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEEC--CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCC--CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556677 998864 11 222 13 55 599999986 322 346888854
No 140
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.19 E-value=9.3 Score=29.79 Aligned_cols=32 Identities=25% Similarity=0.697 Sum_probs=19.6
Q ss_pred cccccccccCC-C--CceeeccCCcccHHHHHHHH
Q 016675 35 CSICLEEFSES-D--PSTVTSCKHEFHLQCVLEWC 66 (385)
Q Consensus 35 CpICLe~f~~~-d--~~~vl~CgH~FC~~CI~~WL 66 (385)
||-|-..+... . .+.-..|++.||..|-..|-
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchh
Confidence 77776644221 1 12333589999988877773
No 141
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=23.10 E-value=15 Score=34.26 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=24.5
Q ss_pred cccccccccccCCCCceeeccCCcccHHHHHHHHhc-----CCCCCCccc
Q 016675 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (385)
Q Consensus 33 ~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~-----s~sCPvCR~ 77 (385)
..|.||...-..+.-+..-.|...||..|+..=+.. .-.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357888753211111222478889999999854432 225999964
No 142
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.70 E-value=19 Score=23.99 Aligned_cols=10 Identities=20% Similarity=0.746 Sum_probs=5.7
Q ss_pred cccccccccc
Q 016675 33 DACSICLEEF 42 (385)
Q Consensus 33 ~~CpICLe~f 42 (385)
+.||||+..|
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4566666555
No 143
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.41 E-value=7.3 Score=30.12 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=13.7
Q ss_pred ccCCcccHHHHHHHHh
Q 016675 52 SCKHEFHLQCVLEWCQ 67 (385)
Q Consensus 52 ~CgH~FC~~CI~~WLq 67 (385)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6899999999988754
No 144
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=22.38 E-value=6.3 Score=29.96 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=7.1
Q ss_pred CccccccccchhHHHHH
Q 016675 311 GSENRSENVGITSVSRL 327 (385)
Q Consensus 311 ~~~~~re~agia~v~rm 327 (385)
.+.-.|.|||||+|.-|
T Consensus 44 ~k~~kr~~aGiA~a~A~ 60 (64)
T 3lt7_A 44 DKLEKRLLKLLASSAAL 60 (64)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 33344559999999765
No 145
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=22.35 E-value=38 Score=29.91 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=29.8
Q ss_pred CCCCcccccccccccCCCCcee-e--ccCCcccHHHHHHHHhcC----------CCCCCcc
Q 016675 29 DSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQRS----------SQCPMCW 76 (385)
Q Consensus 29 deeD~~CpICLe~f~~~d~~~v-l--~CgH~FC~~CI~~WLq~s----------~sCPvCR 76 (385)
|-.+..|.||-+-- .+.. - .|...||..||..++-.. =.|-+|.
T Consensus 76 DG~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 33467899998742 1222 2 577899999999887431 2598884
No 146
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.96 E-value=58 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.6
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
...|..|-+.+.. ..+..-+..||..| +.|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4579999998743 23445667788777 5788898887654
No 147
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.90 E-value=23 Score=27.81 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=31.1
Q ss_pred CCCcccccccccccCCCCcee--eccCCcccHHHHHHHHh--------cCCCCCCccccC
Q 016675 30 SCDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWCQ--------RSSQCPMCWQPI 79 (385)
Q Consensus 30 eeD~~CpICLe~f~~~d~~~v--l~CgH~FC~~CI~~WLq--------~s~sCPvCR~~l 79 (385)
+.+..|.||...-.......+ -.|...||..|+..-+. ..-.|+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 346789999976321111222 36889999999876443 123688885543
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.71 E-value=56 Score=23.88 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=27.9
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCCCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~~k 82 (385)
...|..|-+.+...+ .+..-+..||..| ..|-.|...|...
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 357999999875333 3334567777776 5788898887643
No 149
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.42 E-value=7.8 Score=31.86 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=26.0
Q ss_pred CcccccccccccCCCCceeeccCCcccHHHHHHHHhcCCCCCCccccCC
Q 016675 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (385)
Q Consensus 32 D~~CpICLe~f~~~d~~~vl~CgH~FC~~CI~~WLq~s~sCPvCR~~l~ 80 (385)
+..||+|..++.. .=++.+|..|-.. +.....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~-------~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-------DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-------ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCccee-------cCCEEECccccch-hhccccCcchhhHHH
Confidence 4799999988732 1134457777432 233457999988764
Done!