Query 016678
Match_columns 385
No_of_seqs 147 out of 659
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 1.4E-70 3E-75 561.3 33.5 361 1-368 165-573 (577)
2 PF04515 Choline_transpo: Plas 100.0 2.3E-63 5E-68 488.0 31.6 302 40-343 2-333 (334)
3 PF10110 GPDPase_memb: Membran 56.4 1.3E+02 0.0028 25.8 10.2 31 232-262 105-135 (149)
4 KOG2611 Neurochondrin/leucine- 55.0 17 0.00037 37.5 4.4 45 320-367 77-121 (698)
5 PF12273 RCR: Chitin synthesis 43.1 21 0.00044 30.1 2.5 25 39-63 4-28 (130)
6 PF01102 Glycophorin_A: Glycop 40.9 40 0.00086 28.3 3.8 23 41-64 72-94 (122)
7 KOG3966 p53-mediated apoptosis 36.6 16 0.00034 34.9 0.9 45 333-377 9-63 (360)
8 TIGR00985 3a0801s04tom mitocho 35.8 47 0.001 28.8 3.6 31 323-353 13-43 (148)
9 COG1033 Predicted exporters of 31.7 7.4E+02 0.016 27.4 17.2 43 316-364 425-467 (727)
10 KOG3814 Signaling protein van 31.5 5.7E+02 0.012 26.0 13.1 48 48-109 167-215 (531)
11 KOG0721 Molecular chaperone (D 30.0 38 0.00083 31.3 2.2 54 330-383 124-177 (230)
12 PHA03048 IMV membrane protein; 28.6 2.8E+02 0.006 22.0 6.4 42 20-61 17-69 (93)
13 cd03036 ArsC_like Arsenate Red 28.4 36 0.00077 27.7 1.6 25 238-262 2-26 (111)
14 PTZ00370 STEVOR; Provisional 27.4 1.1E+02 0.0023 29.6 4.8 26 36-61 256-281 (296)
15 TIGR01478 STEVOR variant surfa 27.3 1.1E+02 0.0023 29.6 4.7 26 36-61 260-285 (295)
16 PF03788 LrgA: LrgA family; I 25.2 1.4E+02 0.003 23.8 4.4 32 58-91 31-62 (96)
17 PF15186 TEX13: Testis-express 25.1 25 0.00053 30.4 0.1 37 341-381 25-62 (152)
18 PHA02898 virion envelope prote 23.1 3.5E+02 0.0076 21.4 6.0 33 20-52 17-59 (92)
19 PRK13344 spxA transcriptional 22.9 54 0.0012 27.7 1.8 26 237-262 2-27 (132)
20 PRK15410 DgsA anti-repressor M 22.2 37 0.00081 32.3 0.7 26 332-357 219-244 (260)
21 TIGR02220 phg_TIGR02220 phage 21.7 81 0.0018 24.2 2.3 29 223-258 2-30 (77)
22 cd03027 GRX_DEP Glutaredoxin ( 21.5 59 0.0013 23.8 1.5 25 238-262 4-28 (73)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-70 Score=561.33 Aligned_cols=361 Identities=31% Similarity=0.525 Sum_probs=309.8
Q ss_pred CHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hHHHH-HHHHHHHHHHHHHHH
Q 016678 1 MWLLLLGSPANQMLKISVHILTTYLAVISVLCFW-------------------------CDQFF-WGVAFATAAALQFLY 54 (385)
Q Consensus 1 ~wl~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-~~ii~~i~~~l~~~~ 54 (385)
+|+.++|.+++.++|....+....++...-.+++ ..+.. .||++.++.++.+++
T Consensus 165 i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~ 244 (577)
T KOG1362|consen 165 IFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSLFVAVGNQLTLLDAVGIVLTVISVVLVLY 244 (577)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998876544333333323332 13333 699999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhcccccc----------cCCCc---hHHHH
Q 016678 55 VISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASD----------MDDGG---RWWLL 121 (385)
Q Consensus 55 ~~~~r~rI~~a~~ll~~a~~~i~~~p~l~~v~~~~~~~~~~~~~~w~~~~~g~~~~~----------~~~~~---~~~~~ 121 (385)
.+.+|+||+++++++|+|+|++.+.|++.+.|..+.++.++|..+|+.+..+....+ .++++ .||++
T Consensus 245 ~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~ 324 (577)
T KOG1362|consen 245 IIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFLVTSGPNSEGGCACTYSGGSLRILFWLL 324 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCceeeccCCcchhHhHHH
Confidence 999999999999999999999999999999999999999899999998766554444 11222 44555
Q ss_pred HHHHHHHHHHHHHHhhccccceeceeeeeecccCCCCCCCCCchHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHH
Q 016678 122 LVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSLGSICYGSLFTAAIRTLRWEIRGI 201 (385)
Q Consensus 122 ~~~~f~~~W~~~~l~~~~~~tvAg~va~WYF~~~~~~~~~~~~p~~~s~~ra~~~h~GSi~~GSlivaiv~~lr~il~~~ 201 (385)
++.. ++|+++|+.|++|+++||++++|||++++ +|+|..|+..|++|+++||+||+|+|||++++++++|.++|++
T Consensus 325 vv~~--l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~ra~~yhlGSi~~GSliv~iV~i~R~iL~~i 400 (577)
T KOG1362|consen 325 VVGS--LIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRRALRYHLGSICFGSLLVALVRILRVILRYI 400 (577)
T ss_pred HHHH--HHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHH
Confidence 5444 99999999999999999999999999874 7999999999999999999999999999999999999999999
Q ss_pred HhccCC--c---hhHHHhHHHHHHHHHHHHHHHhHHhHhhHhhcCCChhHHHHHHHHHHHhccchhhhhhchhhHHHH-H
Q 016678 202 RSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQSTGVEALVAYDCSGAVLL-M 275 (385)
Q Consensus 202 ~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~L~~~n~~~~~~~~~~~~~~l~-l 275 (385)
|+|.|+ | ++++||++||+||+|++++++|||||+++|+||++||+||||+|++++|| ...+++.|.++++++ +
T Consensus 401 ~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~~ll~~N-v~~vv~~d~vs~~llfl 479 (577)
T KOG1362|consen 401 RHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAWELLRRN-VLRVVDVDLVSDFLLFL 479 (577)
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHHHHHHHH-HHHHhhhhhhhHHHHHH
Confidence 998875 3 58999999999999999999999999999999999999999999999999 666899999999876 5
Q ss_pred HHHHhHHHHHhhhhHhhhhhccC--chhHHHHHHHHHH-HHHHHHhHhHHHHHHHHHHHHHhcccccccCCChhHHHHHH
Q 016678 276 GTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMS 352 (385)
Q Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~-~~v~~~f~~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~ 352 (385)
||+.++..++ +++.+.+...++ +.+.+.+.++++| |++++.|+++++|+|||+|+||+||||+||++ ||+|++|+
T Consensus 480 gk~l~~~~~g-~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~m~VdtlflCf~eD~e~n~gs-~~~p~~~~ 557 (577)
T KOG1362|consen 480 GKLLGAIGSG-VAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLEMCVDTLFLCFAEDPESNDGS-PEKPQFMS 557 (577)
T ss_pred HHHHHHHHHH-HHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeEecHhhcCCC-CCcceeee
Confidence 7766554444 567766666666 6778888999999 99999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcchhccc
Q 016678 353 ETLHQRLQYRSARARE 368 (385)
Q Consensus 353 ~~~~~~~~~~~~~~~~ 368 (385)
|.+++.++++++.+++
T Consensus 558 ~~l~~~~~~~~~~~~~ 573 (577)
T KOG1362|consen 558 EQLLEILGRSNKAPRV 573 (577)
T ss_pred HHHHHhcccccccchh
Confidence 9999999999774443
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=2.3e-63 Score=487.99 Aligned_cols=302 Identities=29% Similarity=0.533 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccccccc-------
Q 016678 40 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDM------- 112 (385)
Q Consensus 40 ~~ii~~i~~~l~~~~~~~~r~rI~~a~~ll~~a~~~i~~~p~l~~v~~~~~~~~~~~~~~w~~~~~g~~~~~~------- 112 (385)
.++++++.+++.++++++.||||+++++++|+|++++++||+++++|++..++..+|.++|+.+..+....+.
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4788889999999999999999999999999999999999999999999999999999999987765544321
Q ss_pred --------------CCCchHHHHHHHHHHHHHHHHHHhhccccceeceeeeeecccCCCCCCCCCchHHHHHHHHHhhcc
Q 016678 113 --------------DDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSL 178 (385)
Q Consensus 113 --------------~~~~~~~~~~~~~f~~~W~~~~l~~~~~~tvAg~va~WYF~~~~~~~~~~~~p~~~s~~ra~~~h~ 178 (385)
.|+...++.+|++|+++|+++|++|++++++||++++|||++++ +++|+.|+.+|++|+++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~--~~~~~~~~~~s~~~~~~~~~ 159 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDK--PNMPKSPVLRSLKRALTYHF 159 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCc--ccccchHHHHHHHHHHHHhH
Confidence 01245678899999999999999999999999999999999874 38899999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhccCCc-----hhHHHhHHHHHHHHHHHHHHHhHHhHhhHhhcCCChhHHHHHHHH
Q 016678 179 GSICYGSLFTAAIRTLRWEIRGIRSKIGNN-----ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWE 253 (385)
Q Consensus 179 GSi~~GSlivaiv~~lr~il~~~~~~~~~~-----~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~ 253 (385)
||+|+|||++++++++|.++++++++.+++ +++.||++||++|+|+++||+||+||+++|+||++||+|||++++
T Consensus 160 GSi~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~ 239 (334)
T PF04515_consen 160 GSICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFE 239 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999988763 378899999999999999999999999999999999999999999
Q ss_pred HHHhccchhhhhhchhhHHHHHHHHHhHHHHHhhhhHhhhhh----ccCchhHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 016678 254 LFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTK----WHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSI 329 (385)
Q Consensus 254 L~~~n~~~~~~~~~~~~~~l~lg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~v~~~f~~v~~~~vdTi 329 (385)
|++||+.++..+|++++.++++||+.+++.+++.++.+.... ..+++..|.++++++++.+++++++++++++||+
T Consensus 240 L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti 319 (334)
T PF04515_consen 240 LIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTI 319 (334)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777665421 2234567888999999999999999999999999
Q ss_pred HHHHhcccccccCC
Q 016678 330 YICYAEDPLLIHRW 343 (385)
Q Consensus 330 fvCf~eD~e~~~~~ 343 (385)
|+||+||||.++.+
T Consensus 320 ~vc~~~d~e~~~~~ 333 (334)
T PF04515_consen 320 FVCYAEDPEMNKND 333 (334)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999998765
No 3
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=56.42 E-value=1.3e+02 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=27.7
Q ss_pred HhHhhHhhcCCChhHHHHHHHHHHHhccchh
Q 016678 232 YAYVQIAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 232 ~Ayi~iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
++.-.+.+.++++.+|-|+++++.++|.++.
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 5667789999999999999999999998874
No 4
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=54.99 E-value=17 Score=37.51 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhcchhcc
Q 016678 320 VVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAR 367 (385)
Q Consensus 320 ~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~ 367 (385)
.||.+..-|++-|||.|||.- +|||.-..+ +.+.+++.++.++.+
T Consensus 77 ~Vy~~i~itvLacFC~~pElA--sh~~~v~~I-P~llev~~~~~d~d~ 121 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPELA--SHEEMVSRI-PLLLEVMSKGIDTDY 121 (698)
T ss_pred HHHHHHHHHHHHHHhCChhhc--cCHHHHHhh-hHHHHHHHhcCCCch
Confidence 577777889999999999984 467766554 347777877766553
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=43.13 E-value=21 Score=30.10 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 016678 39 FWGVAFATAAALQFLYVISVIDRLS 63 (385)
Q Consensus 39 ~~~ii~~i~~~l~~~~~~~~r~rI~ 63 (385)
+++++.+++.++++++++..|||.+
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555555555666665
No 6
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.93 E-value=40 Score=28.32 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 016678 41 GVAFATAAALQFLYVISVIDRLSF 64 (385)
Q Consensus 41 ~ii~~i~~~l~~~~~~~~r~rI~~ 64 (385)
|++..++++++ +..|++|||++.
T Consensus 72 gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 72 GVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHS--
T ss_pred HHHHHHHHHHH-HHHHHHHHHhcc
Confidence 34444444333 334445555544
No 7
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=36.58 E-value=16 Score=34.85 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=30.1
Q ss_pred HhcccccccCCChhHHHHHHHHHHH----------HHHhcchhcccccccccccc
Q 016678 333 YAEDPLLIHRWDAEFFNQMSETLHQ----------RLQYRSARAREVLTNNRFDS 377 (385)
Q Consensus 333 f~eD~e~~~~~~p~~~~~m~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 377 (385)
.+.|.|.|.+.|.+..+...+++.+ .+.+++++++|+.++++.++
T Consensus 9 l~i~dev~~qe~~~~~~~~~~D~arg~~ds~~gi~~v~iree~akq~~ee~~~r~ 63 (360)
T KOG3966|consen 9 LHIDDEVNRQEHMVKFQIIARDFARGFIDSFKGITFVRIREEEAKQVKEEPPKRV 63 (360)
T ss_pred EEeecccchHHHHHHHHHHHHHHhhcCCccccchhhhhhhHHHHHHhhhcCCchH
Confidence 3578888887777766666665443 34566777788877766654
No 8
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.82 E-value=47 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcccccccCCChhHHHHHHH
Q 016678 323 ESAVTSIYICYAEDPLLIHRWDAEFFNQMSE 353 (385)
Q Consensus 323 ~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~ 353 (385)
..++-|.|++||.=-+.-.+||||.-..+.+
T Consensus 13 ag~a~~~flgYciYFD~KRR~dPdFRkkLr~ 43 (148)
T TIGR00985 13 AGIAAAAFLGYAIYFDYKRRNDPDFRKKLRR 43 (148)
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence 3445689999999888888999996655444
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=31.67 E-value=7.4e+02 Score=27.36 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHhHhHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhcch
Q 016678 316 GLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSA 364 (385)
Q Consensus 316 ~~f~~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~ 364 (385)
......++.. |++.+..--|++ .|||.-+.|.+ +++.+++++.
T Consensus 425 ~~i~~~~ggs-~~~~i~~~~~d~----~dp~~l~~md~-l~~~l~~~~~ 467 (727)
T COG1033 425 DFIEKEFGGS-DPITIVLEAEDV----RDPEVLRWMDE-LEEELEKGEE 467 (727)
T ss_pred HHHHHHcCCC-ceEEEEEECCCC----CChHHHHHHHH-HHHHHHhcce
Confidence 3445677777 888888766666 67998887777 6666665533
No 10
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=31.50 E-value=5.7e+02 Score=25.95 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhcCchHHH-HHHHHHHHHHHHHHHHHHhhcccc
Q 016678 48 AALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRV-AYVFMAVMLLWMGIWSFGTAGVVA 109 (385)
Q Consensus 48 ~~l~~~~~~~~r~rI~~a~~ll~~a~~~i~~~p~l~~v-~~~~~~~~~~~~~~w~~~~~g~~~ 109 (385)
-+++.++..++||+ ..+||-++++ +++.+++.++.+++|.+=...+..
T Consensus 167 ~L~ig~walf~Rk~--------------~A~mPRvf~~RAlll~LV~~~~fayWLFYiVri~~ 215 (531)
T KOG3814|consen 167 ILLIGIWALFFRKA--------------MADMPRVFVVRALLLVLVFLIVFAYWLFYIVRILD 215 (531)
T ss_pred HHHHHHHHHHhhhh--------------hccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33444556666664 3579999987 555555555667889875555554
No 11
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.99 E-value=38 Score=31.31 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=39.9
Q ss_pred HHHHhcccccccCCChhHHHHHHHHHHHHHHhcchhcccccccccccccccccC
Q 016678 330 YICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARAREVLTNNRFDSHTQESL 383 (385)
Q Consensus 330 fvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (385)
-+=|=-|.+...+.+.+.++.+.+++...-.++..|..|--.+|+.|.||++|.
T Consensus 124 Sik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~~s~GI 177 (230)
T KOG0721|consen 124 SIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQATSFGI 177 (230)
T ss_pred hhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccchhhHh
Confidence 344444555543444566788888888777888888889899999999999885
No 12
>PHA03048 IMV membrane protein; Provisional
Probab=28.65 E-value=2.8e+02 Score=21.96 Aligned_cols=42 Identities=12% Similarity=-0.073 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHH--HHHHHHhhh
Q 016678 20 ILTTYLAVISVLCFWC---------DQFFWGVAFATAAALQF--LYVISVIDR 61 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~---------~~~~~~ii~~i~~~l~~--~~~~~~r~r 61 (385)
..+++++++++++|.+ .|-.++++..+.+.+.+ +.++..++|
T Consensus 17 ~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii~FIlgivl~lG~~ifsmy~r 69 (93)
T PHA03048 17 GGIILLAASCIFAFVDFSKNKATVTVWRALSGIAFVLGIVMTIGMLIYSMWGR 69 (93)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556677777662 44566677666665443 333444443
No 13
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=28.36 E-value=36 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=22.6
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+||.+-|..+++|.+++.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDY 26 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCce
Confidence 3799999999999999999998874
No 14
>PTZ00370 STEVOR; Provisional
Probab=27.44 E-value=1.1e+02 Score=29.63 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016678 36 DQFFWGVAFATAAALQFLYVISVIDR 61 (385)
Q Consensus 36 ~~~~~~ii~~i~~~l~~~~~~~~r~r 61 (385)
+.-..+.+++++++++++.+++++||
T Consensus 256 Pygiaalvllil~vvliilYiwlyrr 281 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRR 281 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455778888887776555555554
No 15
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.26 E-value=1.1e+02 Score=29.62 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016678 36 DQFFWGVAFATAAALQFLYVISVIDR 61 (385)
Q Consensus 36 ~~~~~~ii~~i~~~l~~~~~~~~r~r 61 (385)
+.-..+.+++++++++++.+++++||
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455777888887766555555554
No 16
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=25.19 E-value=1.4e+02 Score=23.81 Aligned_cols=32 Identities=6% Similarity=-0.069 Sum_probs=26.0
Q ss_pred HhhhHHHHHHHHHHHHHhhhhcCchHHHHHHHHH
Q 016678 58 VIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMA 91 (385)
Q Consensus 58 ~r~rI~~a~~ll~~a~~~i~~~p~l~~v~~~~~~ 91 (385)
.+|++|. +-++.+++.+-++..++++|....+
T Consensus 31 ~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VGi 62 (96)
T PF03788_consen 31 MFKIVKL--EWIEPAANFLLKNMALFFVPAGVGI 62 (96)
T ss_pred HcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788876 7889999999999999998876444
No 17
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=25.08 E-value=25 Score=30.38 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=27.3
Q ss_pred cCCChhHH-HHHHHHHHHHHHhcchhcccccccccccccccc
Q 016678 341 HRWDAEFF-NQMSETLHQRLQYRSARAREVLTNNRFDSHTQE 381 (385)
Q Consensus 341 ~~~~p~~~-~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (385)
++.-||+| +.++..|.+. +++.+-+++||++|+..++
T Consensus 25 n~~GpeFYl~~~S~sW~eV----EdkLraIl~d~~Vp~~~K~ 62 (152)
T PF15186_consen 25 NGGGPEFYLENRSLSWEEV----EDKLRAILEDSQVPREAKR 62 (152)
T ss_pred cCCCchHHHHhccCCHHHH----HHHHHHHHhCccCCHHHHH
Confidence 33349988 6677777654 4566889999999998765
No 18
>PHA02898 virion envelope protein; Provisional
Probab=23.11 E-value=3.5e+02 Score=21.37 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHH
Q 016678 20 ILTTYLAVISVLCFWC----------DQFFWGVAFATAAALQF 52 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~----------~~~~~~ii~~i~~~l~~ 52 (385)
..+++++++++++|.+ .|-.++++..+++.+.+
T Consensus 17 ~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgivl~ 59 (92)
T PHA02898 17 FGIILLIVACICAYIELSKSEKPADSALRSISIISFILAIILI 59 (92)
T ss_pred HHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3445556677776652 34456677766665543
No 19
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.94 E-value=54 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|+++|+|.+.+.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~ 27 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSY 27 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 34899999999999999999999774
No 20
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=22.20 E-value=37 Score=32.31 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=22.0
Q ss_pred HHhcccccccCCChhHHHHHHHHHHH
Q 016678 332 CYAEDPLLIHRWDAEFFNQMSETLHQ 357 (385)
Q Consensus 332 Cf~eD~e~~~~~~p~~~~~m~~~~~~ 357 (385)
.|-|.|+..+..||++|+.+.+-+.+
T Consensus 219 ~FFE~P~~l~~~~P~LY~~L~~~yrq 244 (260)
T PRK15410 219 YFFSAPELFAPRFPALYQRFCQFYRQ 244 (260)
T ss_pred hhhhCHHHHHHhCHHHHHHHHHHhCC
Confidence 46689999999999999998886654
No 21
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=21.65 E-value=81 Score=24.23 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHHhHHhHhhHhhcCCChhHHHHHHHHHHHhc
Q 016678 223 ETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 258 (385)
Q Consensus 223 e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~L~~~n 258 (385)
+.+++|+|+.+ |++|-.+++...++++.+
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR 30 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKAR 30 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHH
Confidence 46789999986 999999999999999877
No 22
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=21.46 E-value=59 Score=23.81 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.5
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+|+.+-|..++++-+++.+++...
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~~gi~~ 28 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLREKGLPY 28 (73)
T ss_pred EEEecCCChhHHHHHHHHHHCCCce
Confidence 4788899999999999999998774
Done!