Query 016678
Match_columns 385
No_of_seqs 147 out of 659
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 17:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nwd_B GAD, glutamate decarbox 32.4 35 0.0012 19.3 2.3 25 340-364 3-27 (28)
2 3f0i_A Arsenate reductase; str 21.3 42 0.0014 26.5 1.9 27 236-262 5-31 (119)
3 3rdw_A Putative arsenate reduc 20.4 44 0.0015 26.4 1.9 26 237-262 7-32 (121)
4 3fz4_A Putative arsenate reduc 20.3 24 0.00082 28.0 0.3 27 236-262 4-30 (120)
5 3khi_A Putative metal-dependen 18.1 37 0.0013 31.1 1.1 25 333-357 222-246 (267)
6 3gkx_A Putative ARSC family re 17.9 45 0.0016 26.3 1.4 26 237-262 6-31 (120)
7 3l78_A Regulatory protein SPX; 17.5 32 0.0011 27.1 0.4 26 237-262 2-27 (120)
8 1rw1_A Conserved hypothetical 16.3 51 0.0018 25.5 1.4 25 238-262 3-27 (114)
9 1s3c_A Arsenate reductase; ARS 16.0 64 0.0022 26.3 1.9 26 237-262 4-29 (141)
10 2kok_A Arsenate reductase; bru 15.5 51 0.0017 25.8 1.2 26 237-262 7-32 (120)
No 1
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=32.40 E-value=35 Score=19.30 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=19.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHhcch
Q 016678 340 IHRWDAEFFNQMSETLHQRLQYRSA 364 (385)
Q Consensus 340 ~~~~~p~~~~~m~~~~~~~~~~~~~ 364 (385)
.+.+++|..-+|..+|.++++.+.+
T Consensus 3 hkktdsevqlemitawkkfveekkk 27 (28)
T 1nwd_B 3 HKKTDSEVQLEMITAWKKFVEEKKK 27 (28)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CccchHHHHHHHHHHHHHHHHHhhc
Confidence 3456678888899999999977644
No 2
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=21.30 E-value=42 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=24.1
Q ss_pred hHhhcCCChhHHHHHHHHHHHhccchh
Q 016678 236 QIAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 236 ~iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
.+-+||.+-|..+|++.++++++|...
T Consensus 5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (119)
T 3f0i_A 5 SVVIYHNPKCSKSRETLALLENQGIAP 31 (119)
T ss_dssp CCEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCce
Confidence 467899999999999999999998864
No 3
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=20.45 E-value=44 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=23.5
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|..++++.++++++|...
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~ 32 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITP 32 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 55899999999999999999998764
No 4
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.34 E-value=24 Score=28.00 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=24.0
Q ss_pred hHhhcCCChhHHHHHHHHHHHhccchh
Q 016678 236 QIAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 236 ~iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
++-+||.+-|..+|++.++++++|...
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~ 30 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDY 30 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCce
Confidence 456899999999999999999998764
No 5
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=18.08 E-value=37 Score=31.13 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.6
Q ss_pred HhcccccccCCChhHHHHHHHHHHH
Q 016678 333 YAEDPLLIHRWDAEFFNQMSETLHQ 357 (385)
Q Consensus 333 f~eD~e~~~~~~p~~~~~m~~~~~~ 357 (385)
|-|.|+..+..||++|+.+++-+++
T Consensus 222 FFe~P~~l~~~~P~LY~~L~~fyrq 246 (267)
T 3khi_A 222 FFSAPELFAPRFPALWQRFCHFYRQ 246 (267)
T ss_dssp HHHCHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHhCcHHHHHHCHHHHHHHHHHHCc
Confidence 5579999999999999998887764
No 6
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=17.86 E-value=45 Score=26.32 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.6
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|..++++-+++.++|...
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEY 31 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 56899999999999999999998774
No 7
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=17.54 E-value=32 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|..++++-+++.++|...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~ 27 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWLNRHDVVF 27 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 45899999999999999999998764
No 8
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=16.25 E-value=51 Score=25.53 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.4
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+||.+-|..++++-+++.++|...
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~~ 27 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCChHHHHHHHHHHHCCCce
Confidence 4799999999999999999998774
No 9
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=15.97 E-value=64 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|..++++-+++.++|...
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~ 29 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEP 29 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCE
Confidence 45899999999999999999998874
No 10
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=15.54 E-value=51 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.4
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+-|..++++-+++.++|.+.
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~y 32 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGIDY 32 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCcE
Confidence 56899999999999999999998874
Done!