Query 016678
Match_columns 385
No_of_seqs 147 out of 659
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 17:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016678.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016678hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rw1a_ c.47.1.12 (A:) Hypothe 16.3 24 0.0018 25.6 1.4 25 238-262 3-27 (114)
2 d1z3ea1 c.47.1.12 (A:1-114) Re 14.9 20 0.0014 26.2 0.5 26 237-262 2-27 (114)
3 d1nm3a1 c.47.1.1 (A:166-239) C 13.2 31 0.0023 22.6 1.2 25 238-262 8-32 (74)
4 d1fpoa1 a.2.3.1 (A:1-76) HSC20 12.4 10 0.00076 25.7 -1.7 14 364-377 55-68 (76)
5 d1r7ha_ c.47.1.1 (A:) Glutared 12.0 40 0.0029 21.9 1.4 25 238-262 4-28 (74)
6 d1kqfc_ f.21.1.1 (C:) Formate 11.4 2E+02 0.015 22.3 6.2 41 310-351 162-203 (216)
7 d1egoa_ c.47.1.1 (A:) Glutared 10.6 40 0.0029 22.8 1.0 23 238-260 4-26 (85)
8 d1j9ba_ c.47.1.12 (A:) Arsenat 10.3 56 0.0041 24.5 1.9 25 238-262 3-27 (138)
9 d1p49a_ c.76.1.2 (A:) Steryl-s 9.7 83 0.006 28.3 3.3 34 335-368 485-521 (553)
10 d1h75a_ c.47.1.1 (A:) Glutared 9.1 58 0.0042 21.3 1.4 25 238-262 4-28 (76)
No 1
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.29 E-value=24 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.8
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+||.+=|.++|+|.+.++.|+.+.
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~ 27 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCe
Confidence 3799999999999999999999875
No 2
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=14.93 E-value=20 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.3
Q ss_pred HhhcCCChhHHHHHHHHHHHhccchh
Q 016678 237 IAVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 237 iai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
+-+||.+=|.++|+|.+.++.|+.+.
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~ 27 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPF 27 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 34799999999999999999999874
No 3
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=13.24 E-value=31 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=18.0
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-||+++.|.=++++-+++.+++...
T Consensus 8 ~iYs~~~C~~C~~ak~lL~~~~i~~ 32 (74)
T d1nm3a1 8 SIFTKPGCPFCAKAKQLLHDKGLSF 32 (74)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCe
Confidence 4667777777777777888887753
No 4
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=12.40 E-value=10 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.193 Sum_probs=10.6
Q ss_pred hhcccccccccccc
Q 016678 364 ARAREVLTNNRFDS 377 (385)
Q Consensus 364 ~~~~~~~~~~~~~~ 377 (385)
+++++|++||..+.
T Consensus 55 ~~Ay~vL~dp~~R~ 68 (76)
T d1fpoa1 55 NQAWQTLRHPLMRA 68 (76)
T ss_dssp HHHHHHHHSHHHHH
T ss_pred HHHHHHhCCHHHHH
Confidence 57899999887543
No 5
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=11.97 E-value=40 Score=21.95 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.3
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+|+++.|.-++++-+++++++...
T Consensus 4 ~iYt~~~C~~C~~ak~~L~~~~i~~ 28 (74)
T d1r7ha_ 4 TLYTKPACVQCTATKKALDRAGLAY 28 (74)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCChhHHHHHHHHHHcCCce
Confidence 4678888888888888899998874
No 6
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=11.37 E-value=2e+02 Score=22.28 Aligned_cols=41 Identities=5% Similarity=0.186 Sum_probs=21.8
Q ss_pred HHHHHHHHhHhHHH-HHHHHHHHHHhcccccccCCChhHHHHH
Q 016678 310 MGMVLVGLAMVVVE-SAVTSIYICYAEDPLLIHRWDAEFFNQM 351 (385)
Q Consensus 310 i~~~v~~~f~~v~~-~~vdTifvCf~eD~e~~~~~~p~~~~~m 351 (385)
+++.+.++++.+.. ...++++-.|. |.|..+..||.-++++
T Consensus 162 ~~~vi~Hvy~a~~~~~~l~~M~tG~v-~~~~~~~~h~~w~~~~ 203 (216)
T d1kqfc_ 162 IHAILIHMYMAFWVKGSIKGMIEGKV-SRRWAKKHHPRWYREI 203 (216)
T ss_dssp HHHHHHHHHHHHHBTTHHHHHHTCEE-EHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHccccccchhheeec-cHHHHHHHHHHHHHHH
Confidence 33445566555432 45666666655 4444455566655443
No 7
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=40 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=15.1
Q ss_pred hhcCCChhHHHHHHHHHHHhccc
Q 016678 238 AVYGKGFNRSARDAWELFQSTGV 260 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~ 260 (385)
-||+++.|+-++++-+++.+++.
T Consensus 4 viysk~~Cp~C~~aK~ll~~~~~ 26 (85)
T d1egoa_ 4 VIFGRSGCPYCVRAKDLAEKLSN 26 (85)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHhHHHHHHHHHHcCC
Confidence 35666666666677777777553
No 8
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=10.33 E-value=56 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.7
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+||.+=|..+|+|.++++.++...
T Consensus 3 ~iY~~p~Cs~srkal~~L~~~~i~~ 27 (138)
T d1j9ba_ 3 TIYHNPACGTSRNTLEMIRNSGTEP 27 (138)
T ss_dssp EEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCe
Confidence 4799999999999999999999874
No 9
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=83 Score=28.27 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=23.9
Q ss_pred cccccccC---CChhHHHHHHHHHHHHHHhcchhccc
Q 016678 335 EDPLLIHR---WDAEFFNQMSETLHQRLQYRSARARE 368 (385)
Q Consensus 335 eD~e~~~~---~~p~~~~~m~~~~~~~~~~~~~~~~~ 368 (385)
+||.+.+. .+|+++++|.+.+++.+++..++..+
T Consensus 485 ~DP~E~~NL~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 521 (553)
T d1p49a_ 485 KDPRERNPLTPASEPRFYEILKVMQEAADRHTQTLPE 521 (553)
T ss_dssp TCTTCCSCCCSTTTTSHHHHHHHHHHHHHHHTTSCCC
T ss_pred cChhhhhhcccccCHHHHHHHHHHHHHHHHHhhhCCC
Confidence 57666543 36888989999999988776554443
No 10
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=9.13 E-value=58 Score=21.30 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=19.8
Q ss_pred hhcCCChhHHHHHHHHHHHhccchh
Q 016678 238 AVYGKGFNRSARDAWELFQSTGVEA 262 (385)
Q Consensus 238 ai~G~~F~~Sak~a~~L~~~n~~~~ 262 (385)
-+|+++-|.-++++-+++.+++...
T Consensus 4 ~iYs~~~C~~C~~ak~~L~~~~i~y 28 (76)
T d1h75a_ 4 TIYTRNDCVQCHATKRAMENRGFDF 28 (76)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCCccHHHHHHHHHhcCcee
Confidence 4677788888888888899988874
Done!