Query 016680
Match_columns 384
No_of_seqs 70 out of 72
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 97.2 0.0072 1.6E-07 53.8 12.7 105 202-306 18-132 (143)
2 PF05701 WEMBL: Weak chloropla 97.1 0.032 7E-07 58.5 17.7 39 65-103 27-65 (522)
3 KOG0161 Myosin class II heavy 96.6 0.0095 2.1E-07 70.9 9.9 104 201-311 1269-1372(1930)
4 PF01576 Myosin_tail_1: Myosin 95.0 0.0063 1.4E-07 67.3 0.0 111 194-311 204-314 (859)
5 TIGR02168 SMC_prok_B chromosom 93.7 4.8 0.0001 44.1 18.1 39 65-103 670-708 (1179)
6 KOG4643 Uncharacterized coiled 93.6 0.53 1.1E-05 53.8 10.8 106 194-299 173-295 (1195)
7 PF05701 WEMBL: Weak chloropla 93.6 1.4 3.1E-05 46.5 13.5 112 195-306 278-410 (522)
8 TIGR02169 SMC_prok_A chromosom 92.8 2.4 5.3E-05 46.6 14.3 52 255-306 876-927 (1164)
9 PRK02224 chromosome segregatio 92.2 4.8 0.0001 44.1 15.6 44 270-313 525-568 (880)
10 TIGR02169 SMC_prok_A chromosom 92.0 5.4 0.00012 44.0 15.8 60 244-303 872-931 (1164)
11 PF00038 Filament: Intermediat 91.8 4.9 0.00011 38.6 13.5 95 196-293 207-301 (312)
12 KOG0977 Nuclear envelope prote 91.5 2.8 6.1E-05 45.3 12.6 76 195-277 110-185 (546)
13 PF10473 CENP-F_leu_zip: Leuci 91.2 5.7 0.00012 36.0 12.4 79 195-273 7-85 (140)
14 PF12128 DUF3584: Protein of u 90.1 26 0.00057 40.7 19.4 107 194-307 603-710 (1201)
15 COG1579 Zn-ribbon protein, pos 89.5 6.2 0.00013 38.6 12.0 44 195-238 28-71 (239)
16 PF07888 CALCOCO1: Calcium bin 89.5 8.1 0.00018 41.9 13.9 48 195-242 175-222 (546)
17 PRK11637 AmiB activator; Provi 89.0 6.6 0.00014 40.0 12.4 87 195-281 44-134 (428)
18 PF09726 Macoilin: Transmembra 88.8 5.8 0.00013 43.9 12.6 43 196-238 423-479 (697)
19 PRK11637 AmiB activator; Provi 88.5 5.3 0.00011 40.7 11.3 42 195-236 51-92 (428)
20 PF09726 Macoilin: Transmembra 88.0 9.4 0.0002 42.3 13.5 100 200-310 420-526 (697)
21 PRK09039 hypothetical protein; 87.9 14 0.0003 37.3 13.7 41 271-311 147-187 (343)
22 PF12777 MT: Microtubule-bindi 87.7 6.9 0.00015 39.1 11.3 116 199-314 9-132 (344)
23 PF13851 GAS: Growth-arrest sp 87.5 25 0.00054 33.1 14.2 103 200-306 29-131 (201)
24 PF00038 Filament: Intermediat 86.8 19 0.00042 34.6 13.5 95 205-299 4-113 (312)
25 PF15619 Lebercilin: Ciliary p 86.5 23 0.00049 33.4 13.4 100 204-303 11-110 (194)
26 PF07888 CALCOCO1: Calcium bin 86.2 30 0.00064 37.8 15.7 60 252-311 288-348 (546)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.0 22 0.00049 30.9 12.7 42 197-238 2-43 (132)
28 COG4942 Membrane-bound metallo 85.7 7.9 0.00017 40.8 10.9 84 196-282 43-126 (420)
29 COG1196 Smc Chromosome segrega 85.4 13 0.00029 42.8 13.4 96 197-292 389-498 (1163)
30 PF15619 Lebercilin: Ciliary p 85.2 27 0.00058 33.0 13.1 43 194-236 71-113 (194)
31 KOG0161 Myosin class II heavy 85.2 20 0.00043 44.2 15.1 106 196-301 1067-1172(1930)
32 PF04156 IncA: IncA protein; 84.9 29 0.00062 31.2 13.0 89 197-285 87-175 (191)
33 TIGR00606 rad50 rad50. This fa 84.7 42 0.00091 39.4 17.1 116 196-311 417-537 (1311)
34 PF12718 Tropomyosin_1: Tropom 84.7 29 0.00063 31.1 12.6 96 194-289 24-136 (143)
35 PF08317 Spc7: Spc7 kinetochor 84.7 25 0.00055 34.9 13.4 13 289-301 276-288 (325)
36 PF00261 Tropomyosin: Tropomyo 84.6 9.1 0.0002 36.3 9.9 42 195-236 5-46 (237)
37 TIGR01843 type_I_hlyD type I s 83.6 34 0.00073 33.5 13.6 21 69-89 78-98 (423)
38 COG4942 Membrane-bound metallo 83.5 43 0.00094 35.5 15.0 38 66-103 53-90 (420)
39 COG2433 Uncharacterized conser 83.2 21 0.00045 39.5 12.9 50 267-316 480-547 (652)
40 smart00787 Spc7 Spc7 kinetocho 83.1 39 0.00084 34.1 14.1 74 231-304 209-286 (312)
41 TIGR02680 conserved hypothetic 82.8 25 0.00054 41.6 14.4 37 195-231 287-323 (1353)
42 PRK10884 SH3 domain-containing 82.6 17 0.00037 34.6 10.8 77 196-296 91-167 (206)
43 KOG4074 Leucine zipper nuclear 82.5 11 0.00024 38.7 10.0 62 219-303 151-219 (383)
44 PF10186 Atg14: UV radiation r 82.2 28 0.0006 32.6 12.0 26 213-238 21-46 (302)
45 COG1196 Smc Chromosome segrega 81.2 48 0.001 38.4 15.7 35 68-102 670-704 (1163)
46 PF08317 Spc7: Spc7 kinetochor 81.0 47 0.001 33.1 13.7 46 255-300 217-262 (325)
47 PF11559 ADIP: Afadin- and alp 80.9 26 0.00056 30.7 10.7 39 197-235 65-103 (151)
48 PRK02224 chromosome segregatio 80.5 44 0.00096 36.8 14.5 96 219-314 349-451 (880)
49 TIGR01843 type_I_hlyD type I s 80.5 59 0.0013 31.8 14.1 35 65-101 69-103 (423)
50 KOG4005 Transcription factor X 80.3 7.8 0.00017 38.6 7.8 77 206-282 84-163 (292)
51 PHA02562 46 endonuclease subun 80.2 74 0.0016 32.9 15.3 70 223-292 334-403 (562)
52 PF12329 TMF_DNA_bd: TATA elem 80.1 17 0.00037 29.3 8.6 67 211-277 4-70 (74)
53 PF14662 CCDC155: Coiled-coil 79.3 50 0.0011 31.8 12.6 98 196-297 13-110 (193)
54 PF04111 APG6: Autophagy prote 79.3 20 0.00044 35.8 10.6 41 194-234 46-86 (314)
55 PF12325 TMF_TATA_bd: TATA ele 79.2 45 0.00097 29.5 11.8 91 205-295 16-109 (120)
56 PRK03918 chromosome segregatio 79.1 34 0.00074 37.4 13.1 67 200-266 628-699 (880)
57 PF07106 TBPIP: Tat binding pr 79.1 10 0.00022 33.9 7.8 40 196-235 70-109 (169)
58 PF05667 DUF812: Protein of un 78.8 36 0.00079 37.2 13.1 41 256-299 396-436 (594)
59 PF04156 IncA: IncA protein; 78.5 50 0.0011 29.7 13.2 12 203-214 100-111 (191)
60 TIGR02231 conserved hypothetic 78.3 25 0.00055 36.8 11.4 34 203-236 69-102 (525)
61 PF10174 Cast: RIM-binding pro 77.6 28 0.00061 39.3 12.0 112 195-308 78-209 (775)
62 PF08647 BRE1: BRE1 E3 ubiquit 77.3 19 0.00042 30.0 8.4 28 272-299 42-69 (96)
63 TIGR00606 rad50 rad50. This fa 77.1 63 0.0014 38.0 15.1 118 194-311 825-945 (1311)
64 PF08614 ATG16: Autophagy prot 76.8 15 0.00033 33.7 8.4 43 195-237 92-134 (194)
65 COG3883 Uncharacterized protei 76.4 30 0.00065 34.6 10.7 75 200-281 33-111 (265)
66 PHA02562 46 endonuclease subun 76.2 48 0.001 34.2 12.6 18 250-267 375-392 (562)
67 KOG0977 Nuclear envelope prote 75.8 47 0.001 36.3 12.7 51 194-244 144-194 (546)
68 PRK09039 hypothetical protein; 75.7 48 0.001 33.5 12.2 34 236-269 133-166 (343)
69 KOG0994 Extracellular matrix g 75.6 1.5E+02 0.0033 35.9 17.0 39 66-104 1420-1458(1758)
70 PF14197 Cep57_CLD_2: Centroso 75.4 28 0.00061 28.0 8.4 63 202-264 2-64 (69)
71 PF06818 Fez1: Fez1; InterPro 74.9 50 0.0011 31.8 11.4 90 202-298 7-103 (202)
72 PF04111 APG6: Autophagy prote 74.5 61 0.0013 32.5 12.4 48 195-242 40-87 (314)
73 KOG0933 Structural maintenance 74.1 39 0.00084 39.6 12.0 103 197-299 328-472 (1174)
74 PF06818 Fez1: Fez1; InterPro 74.1 74 0.0016 30.7 12.3 41 195-235 21-61 (202)
75 PF08826 DMPK_coil: DMPK coile 74.0 15 0.00032 29.2 6.5 44 259-302 16-59 (61)
76 KOG0994 Extracellular matrix g 73.4 22 0.00048 42.2 10.0 43 61-103 1521-1563(1758)
77 KOG0976 Rho/Rac1-interacting s 73.0 33 0.00071 39.6 11.0 52 195-246 96-147 (1265)
78 KOG0996 Structural maintenance 72.8 1.1E+02 0.0024 36.5 15.3 71 194-264 482-552 (1293)
79 KOG0288 WD40 repeat protein Ti 72.4 38 0.00082 36.1 10.7 43 194-236 30-72 (459)
80 PF13870 DUF4201: Domain of un 71.9 77 0.0017 28.6 14.2 110 195-304 10-127 (177)
81 PF12128 DUF3584: Protein of u 71.6 90 0.0019 36.5 14.5 43 194-236 624-666 (1201)
82 PF15070 GOLGA2L5: Putative go 70.2 58 0.0013 35.9 12.0 102 194-296 198-314 (617)
83 KOG4674 Uncharacterized conser 70.1 59 0.0013 40.1 12.9 102 194-295 1232-1341(1822)
84 TIGR03185 DNA_S_dndD DNA sulfu 69.3 82 0.0018 34.1 12.8 21 285-305 265-285 (650)
85 TIGR02680 conserved hypothetic 69.0 1.3E+02 0.0029 35.8 15.3 116 199-314 270-393 (1353)
86 PF08647 BRE1: BRE1 E3 ubiquit 68.6 69 0.0015 26.8 11.1 80 196-275 1-80 (96)
87 PF06548 Kinesin-related: Kine 68.1 49 0.0011 35.6 10.5 53 203-262 390-442 (488)
88 KOG0288 WD40 repeat protein Ti 67.7 1.1E+02 0.0024 32.9 12.8 90 209-298 10-106 (459)
89 PF15254 CCDC14: Coiled-coil d 67.3 69 0.0015 36.6 11.9 52 251-302 491-549 (861)
90 PF00769 ERM: Ezrin/radixin/mo 66.9 1.3E+02 0.0028 29.2 12.6 54 259-315 80-133 (246)
91 PF12329 TMF_DNA_bd: TATA elem 66.9 53 0.0011 26.5 8.3 67 195-261 2-68 (74)
92 PRK12704 phosphodiesterase; Pr 66.9 1.1E+02 0.0023 33.0 12.9 119 200-327 105-230 (520)
93 PF15290 Syntaphilin: Golgi-lo 66.8 30 0.00065 35.2 8.3 68 200-268 63-138 (305)
94 PF10174 Cast: RIM-binding pro 66.5 56 0.0012 37.1 11.2 66 231-296 285-350 (775)
95 COG2433 Uncharacterized conser 66.4 54 0.0012 36.5 10.7 24 255-278 482-505 (652)
96 TIGR03185 DNA_S_dndD DNA sulfu 66.4 99 0.0022 33.5 12.8 39 65-103 209-247 (650)
97 KOG0982 Centrosomal protein Nu 66.2 51 0.0011 35.5 10.1 93 196-297 309-418 (502)
98 PF08614 ATG16: Autophagy prot 66.1 61 0.0013 29.8 9.7 43 194-236 119-161 (194)
99 PRK04863 mukB cell division pr 65.7 1.6E+02 0.0035 35.9 15.2 111 194-304 282-405 (1486)
100 PF09787 Golgin_A5: Golgin sub 65.5 44 0.00094 35.4 9.7 73 194-266 277-356 (511)
101 PF04849 HAP1_N: HAP1 N-termin 65.3 32 0.00068 35.1 8.2 44 195-238 217-267 (306)
102 COG1579 Zn-ribbon protein, pos 64.6 1.5E+02 0.0033 29.2 14.5 100 197-296 37-156 (239)
103 PRK10884 SH3 domain-containing 64.3 91 0.002 29.8 10.7 21 195-215 97-117 (206)
104 KOG4360 Uncharacterized coiled 64.2 1.2E+02 0.0026 33.4 12.6 49 194-242 201-249 (596)
105 PF09730 BicD: Microtubule-ass 63.8 1.8E+02 0.0038 33.0 14.2 33 277-309 116-148 (717)
106 COG4026 Uncharacterized protei 63.7 64 0.0014 32.3 9.7 94 205-303 128-221 (290)
107 KOG0250 DNA repair protein RAD 62.1 1E+02 0.0022 36.4 12.3 107 190-296 335-450 (1074)
108 TIGR03752 conj_TIGR03752 integ 60.9 67 0.0015 34.6 10.0 35 202-236 56-90 (472)
109 TIGR01005 eps_transp_fam exopo 60.9 1E+02 0.0022 33.7 11.7 97 195-291 292-396 (754)
110 PF07106 TBPIP: Tat binding pr 60.7 56 0.0012 29.2 8.3 90 203-304 70-160 (169)
111 PF00769 ERM: Ezrin/radixin/mo 60.4 1.7E+02 0.0037 28.4 13.7 40 271-310 78-117 (246)
112 KOG1029 Endocytic adaptor prot 60.3 60 0.0013 37.4 9.9 73 194-266 440-512 (1118)
113 KOG0612 Rho-associated, coiled 60.3 1E+02 0.0022 36.9 11.9 90 195-291 620-709 (1317)
114 KOG4807 F-actin binding protei 60.1 37 0.00079 36.4 7.8 71 210-283 510-580 (593)
115 KOG1003 Actin filament-coating 59.4 1.8E+02 0.0039 28.4 13.4 93 196-295 16-122 (205)
116 TIGR03017 EpsF chain length de 59.1 1.5E+02 0.0033 29.8 11.9 43 195-237 258-300 (444)
117 PF13870 DUF4201: Domain of un 59.0 1.4E+02 0.003 27.0 12.8 90 202-298 46-135 (177)
118 PRK11281 hypothetical protein; 58.9 3.1E+02 0.0068 32.6 15.6 41 63-103 126-166 (1113)
119 PRK00106 hypothetical protein; 58.6 1.5E+02 0.0033 32.3 12.3 119 200-327 120-245 (535)
120 TIGR03319 YmdA_YtgF conserved 58.4 1.6E+02 0.0034 31.7 12.3 119 200-327 99-224 (514)
121 PRK13729 conjugal transfer pil 58.3 15 0.00033 39.3 4.8 41 195-235 80-120 (475)
122 KOG0979 Structural maintenance 58.1 1.4E+02 0.0029 35.3 12.3 112 196-314 246-357 (1072)
123 PF00261 Tropomyosin: Tropomyo 57.9 1.7E+02 0.0038 27.8 18.4 37 66-102 2-38 (237)
124 KOG0250 DNA repair protein RAD 57.8 1.4E+02 0.0029 35.4 12.3 33 274-306 400-432 (1074)
125 PRK00888 ftsB cell division pr 57.5 35 0.00075 29.2 6.0 52 206-260 28-79 (105)
126 KOG0995 Centromere-associated 57.3 1E+02 0.0022 34.0 10.8 51 186-236 254-325 (581)
127 PF01166 TSC22: TSC-22/dip/bun 57.1 18 0.00038 29.0 3.8 32 204-235 13-44 (59)
128 PF04977 DivIC: Septum formati 56.9 38 0.00082 25.9 5.7 52 205-259 17-68 (80)
129 PF07798 DUF1640: Protein of u 56.3 1.6E+02 0.0035 26.9 13.0 103 197-302 50-158 (177)
130 KOG0933 Structural maintenance 56.1 2.5E+02 0.0054 33.5 13.9 45 194-238 737-781 (1174)
131 PF15294 Leu_zip: Leucine zipp 55.6 1.2E+02 0.0026 30.7 10.2 46 195-240 129-174 (278)
132 KOG4603 TBP-1 interacting prot 55.5 1.3E+02 0.0028 29.1 9.9 106 193-312 74-179 (201)
133 PF15254 CCDC14: Coiled-coil d 55.4 1.4E+02 0.0031 34.2 11.8 85 203-287 467-555 (861)
134 PF08826 DMPK_coil: DMPK coile 55.1 40 0.00087 26.8 5.6 42 196-237 16-57 (61)
135 PF06810 Phage_GP20: Phage min 54.7 63 0.0014 29.4 7.6 44 197-240 19-65 (155)
136 PF04201 TPD52: Tumour protein 54.6 28 0.00061 32.6 5.4 35 190-224 27-62 (162)
137 PF04871 Uso1_p115_C: Uso1 / p 54.0 1.6E+02 0.0035 26.3 10.1 33 202-234 5-42 (136)
138 COG1340 Uncharacterized archae 53.3 2.7E+02 0.0058 28.5 13.7 93 201-300 161-260 (294)
139 PF05103 DivIVA: DivIVA protei 53.0 17 0.00036 30.6 3.4 16 287-302 112-127 (131)
140 KOG4673 Transcription factor T 52.9 2.9E+02 0.0063 31.9 13.4 71 195-265 527-598 (961)
141 PF07058 Myosin_HC-like: Myosi 52.6 1.3E+02 0.0028 31.3 10.0 28 207-234 2-29 (351)
142 PF13514 AAA_27: AAA domain 51.9 3.1E+02 0.0066 31.9 14.1 38 66-103 667-704 (1111)
143 KOG0249 LAR-interacting protei 51.7 2.2E+02 0.0048 32.8 12.3 36 267-302 222-257 (916)
144 PF13863 DUF4200: Domain of un 51.6 1.5E+02 0.0032 25.0 13.1 98 195-295 11-108 (126)
145 PF03962 Mnd1: Mnd1 family; I 51.3 1.2E+02 0.0026 28.4 9.0 99 201-314 65-167 (188)
146 PF11559 ADIP: Afadin- and alp 50.9 1.7E+02 0.0037 25.6 13.1 33 268-300 94-126 (151)
147 PRK04863 mukB cell division pr 50.9 3.1E+02 0.0067 33.6 14.2 25 200-224 309-333 (1486)
148 KOG0978 E3 ubiquitin ligase in 50.5 2.6E+02 0.0056 31.8 12.7 80 217-296 529-615 (698)
149 TIGR03495 phage_LysB phage lys 50.4 2E+02 0.0043 26.2 10.2 83 225-307 18-100 (135)
150 PF04849 HAP1_N: HAP1 N-termin 50.3 3E+02 0.0065 28.2 17.0 41 195-235 203-243 (306)
151 PF05700 BCAS2: Breast carcino 49.3 2.4E+02 0.0052 26.8 11.6 25 275-299 189-213 (221)
152 PF04012 PspA_IM30: PspA/IM30 49.1 2.2E+02 0.0048 26.3 14.9 99 196-294 35-138 (221)
153 KOG0999 Microtubule-associated 49.1 2.1E+02 0.0046 32.1 11.6 109 195-307 111-219 (772)
154 PF05911 DUF869: Plant protein 49.0 2.3E+02 0.0049 32.4 12.1 39 200-238 591-629 (769)
155 TIGR01000 bacteriocin_acc bact 48.8 2.5E+02 0.0055 29.0 11.7 30 67-96 92-121 (457)
156 PF06156 DUF972: Protein of un 48.7 41 0.00088 29.2 5.1 23 214-236 10-32 (107)
157 KOG1962 B-cell receptor-associ 48.0 67 0.0014 31.3 7.0 44 196-239 149-192 (216)
158 KOG0995 Centromere-associated 47.6 2.1E+02 0.0046 31.7 11.3 26 205-230 262-287 (581)
159 PF09730 BicD: Microtubule-ass 47.6 2.6E+02 0.0055 31.8 12.2 66 196-265 74-139 (717)
160 PF02403 Seryl_tRNA_N: Seryl-t 47.6 1.6E+02 0.0035 24.3 9.6 70 213-293 30-99 (108)
161 PRK06569 F0F1 ATP synthase sub 47.4 2E+02 0.0043 26.7 9.6 15 281-295 94-108 (155)
162 PF05529 Bap31: B-cell recepto 47.2 32 0.0007 31.3 4.6 39 196-234 152-190 (192)
163 PF11461 RILP: Rab interacting 47.1 28 0.0006 27.8 3.5 30 199-228 4-33 (60)
164 TIGR02977 phageshock_pspA phag 44.4 2.8E+02 0.006 26.1 12.0 100 195-303 35-134 (219)
165 PF05622 HOOK: HOOK protein; 44.2 7.5 0.00016 42.4 0.0 53 251-310 243-295 (713)
166 KOG4571 Activating transcripti 44.1 55 0.0012 33.3 6.0 45 208-252 244-288 (294)
167 PF01576 Myosin_tail_1: Myosin 43.9 7.6 0.00016 43.7 0.0 39 200-238 407-445 (859)
168 PF10168 Nup88: Nuclear pore c 43.5 4.3E+02 0.0093 29.8 13.2 54 210-263 570-623 (717)
169 KOG3433 Protein involved in me 43.2 75 0.0016 30.7 6.4 68 219-286 46-113 (203)
170 KOG4674 Uncharacterized conser 42.9 3.5E+02 0.0075 34.0 13.0 38 70-107 1165-1202(1822)
171 PRK15422 septal ring assembly 42.7 1.5E+02 0.0034 24.9 7.4 33 271-303 35-67 (79)
172 PF09304 Cortex-I_coil: Cortex 42.6 2.4E+02 0.0053 25.0 11.7 35 200-234 25-59 (107)
173 KOG0018 Structural maintenance 42.5 2.4E+02 0.0051 33.6 11.2 101 195-295 231-351 (1141)
174 PF05911 DUF869: Plant protein 42.0 5E+02 0.011 29.8 13.4 43 222-264 599-641 (769)
175 PF02403 Seryl_tRNA_N: Seryl-t 41.7 2E+02 0.0043 23.7 8.3 19 218-236 42-60 (108)
176 PF00015 MCPsignal: Methyl-acc 41.4 2.5E+02 0.0054 24.7 10.4 39 202-240 118-156 (213)
177 KOG1853 LIS1-interacting prote 41.3 4E+02 0.0088 27.3 11.4 33 204-236 51-83 (333)
178 KOG0612 Rho-associated, coiled 40.9 3.3E+02 0.0072 33.0 12.1 37 230-266 491-527 (1317)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 40.5 2.5E+02 0.0054 24.5 13.1 20 196-215 8-27 (132)
180 PF06785 UPF0242: Uncharacteri 40.5 3.6E+02 0.0078 28.6 11.1 38 202-239 82-119 (401)
181 KOG4343 bZIP transcription fac 40.3 43 0.00093 36.9 4.8 42 200-241 297-338 (655)
182 PF02183 HALZ: Homeobox associ 40.3 91 0.002 23.3 5.2 37 203-239 3-39 (45)
183 PF04728 LPP: Lipoprotein leuc 39.7 1.1E+02 0.0024 24.2 5.8 38 65-102 10-47 (56)
184 PLN03188 kinesin-12 family pro 39.5 2.4E+02 0.0053 34.1 10.8 53 205-264 1162-1214(1320)
185 TIGR00998 8a0101 efflux pump m 38.6 3.7E+02 0.0079 25.9 10.8 41 196-236 78-118 (334)
186 PF11471 Sugarporin_N: Maltopo 38.3 45 0.00097 26.3 3.5 25 66-90 33-57 (60)
187 PF05103 DivIVA: DivIVA protei 38.0 13 0.00027 31.3 0.4 39 197-235 31-69 (131)
188 COG2900 SlyX Uncharacterized p 37.9 1.1E+02 0.0025 25.3 5.8 39 65-103 8-46 (72)
189 PRK13169 DNA replication intia 37.6 80 0.0017 27.7 5.3 27 212-238 8-34 (110)
190 PF06156 DUF972: Protein of un 37.6 66 0.0014 27.9 4.8 40 195-234 5-44 (107)
191 KOG0996 Structural maintenance 37.5 4.6E+02 0.01 31.8 12.5 63 251-313 525-594 (1293)
192 PF12777 MT: Microtubule-bindi 37.4 1.4E+02 0.0031 29.9 7.8 91 195-306 218-308 (344)
193 TIGR00998 8a0101 efflux pump m 37.1 3.9E+02 0.0084 25.7 12.1 7 319-325 212-218 (334)
194 COG4741 Predicted secreted end 36.8 3.8E+02 0.0083 25.5 9.8 36 202-238 19-54 (175)
195 PRK04778 septation ring format 36.3 5.2E+02 0.011 27.9 12.1 40 64-103 104-146 (569)
196 KOG0243 Kinesin-like protein [ 36.2 8.3E+02 0.018 29.2 14.3 115 200-314 406-550 (1041)
197 PF07795 DUF1635: Protein of u 36.1 85 0.0018 30.6 5.7 38 67-104 14-58 (214)
198 PF10205 KLRAQ: Predicted coil 35.7 1.3E+02 0.0027 26.4 6.1 47 206-266 27-73 (102)
199 PF03962 Mnd1: Mnd1 family; I 35.4 3.8E+02 0.0082 25.1 9.7 14 293-306 139-152 (188)
200 PF15035 Rootletin: Ciliary ro 35.3 1.3E+02 0.0028 28.3 6.6 44 255-298 65-111 (182)
201 PF00170 bZIP_1: bZIP transcri 35.2 1.3E+02 0.0028 23.0 5.5 25 212-236 26-50 (64)
202 COG5283 Phage-related tail pro 35.1 5.3E+02 0.011 31.2 12.5 110 195-304 40-153 (1213)
203 TIGR01069 mutS2 MutS2 family p 35.0 7.2E+02 0.016 28.2 14.1 11 67-77 224-234 (771)
204 PF09738 DUF2051: Double stran 34.7 3.5E+02 0.0076 27.5 10.0 24 281-304 225-248 (302)
205 COG4372 Uncharacterized protei 34.4 6.3E+02 0.014 27.4 13.2 37 206-242 75-111 (499)
206 KOG4809 Rab6 GTPase-interactin 34.2 4.9E+02 0.011 29.2 11.4 104 197-302 337-446 (654)
207 PF12325 TMF_TATA_bd: TATA ele 33.8 3.4E+02 0.0073 24.1 10.7 82 196-277 28-112 (120)
208 PF11544 Spc42p: Spindle pole 33.4 1.2E+02 0.0027 25.3 5.4 28 208-235 8-35 (76)
209 KOG0240 Kinesin (SMY1 subfamil 33.1 4.1E+02 0.0089 29.8 10.7 118 197-314 413-542 (607)
210 COG1842 PspA Phage shock prote 33.1 4.7E+02 0.01 25.4 13.4 101 195-297 35-135 (225)
211 COG1340 Uncharacterized archae 32.8 5.6E+02 0.012 26.3 12.9 21 255-275 194-214 (294)
212 PF14915 CCDC144C: CCDC144C pr 32.7 5.8E+02 0.012 26.4 11.8 41 195-235 3-47 (305)
213 KOG3650 Predicted coiled-coil 32.3 93 0.002 27.6 4.8 46 190-235 48-93 (120)
214 TIGR03007 pepcterm_ChnLen poly 32.3 5.8E+02 0.013 26.3 11.9 43 195-237 251-293 (498)
215 KOG2010 Double stranded RNA bi 32.1 2E+02 0.0044 30.2 7.9 61 204-264 146-206 (405)
216 COG0419 SbcC ATPase involved i 31.9 8.1E+02 0.018 27.9 15.9 59 256-314 391-455 (908)
217 smart00338 BRLZ basic region l 31.9 1.2E+02 0.0025 23.2 4.8 26 212-237 26-51 (65)
218 smart00787 Spc7 Spc7 kinetocho 31.9 5.6E+02 0.012 26.0 13.0 54 240-300 211-264 (312)
219 PF05812 Herpes_BLRF2: Herpesv 31.7 60 0.0013 29.0 3.6 27 213-239 4-30 (118)
220 KOG4797 Transcriptional regula 31.7 73 0.0016 28.6 4.1 34 202-235 64-97 (123)
221 PF10481 CENP-F_N: Cenp-F N-te 31.6 4.8E+02 0.01 26.9 10.2 90 196-306 44-133 (307)
222 KOG0976 Rho/Rac1-interacting s 31.5 9.5E+02 0.021 28.6 15.6 35 196-230 181-215 (1265)
223 PRK00409 recombination and DNA 31.2 8.3E+02 0.018 27.8 14.5 14 66-79 228-241 (782)
224 PF00170 bZIP_1: bZIP transcri 31.2 1.5E+02 0.0032 22.7 5.3 36 202-237 23-58 (64)
225 PHA03155 hypothetical protein; 31.0 57 0.0012 29.1 3.4 24 214-237 10-33 (115)
226 PRK13922 rod shape-determining 30.9 83 0.0018 30.1 4.8 28 213-240 63-90 (276)
227 TIGR01005 eps_transp_fam exopo 30.9 4.9E+02 0.011 28.6 11.0 94 203-302 286-389 (754)
228 PRK11519 tyrosine kinase; Prov 30.7 3.3E+02 0.0071 30.1 9.8 31 200-230 269-299 (719)
229 PF05483 SCP-1: Synaptonemal c 30.5 8.7E+02 0.019 28.0 12.8 108 193-300 438-559 (786)
230 PF15070 GOLGA2L5: Putative go 30.5 8E+02 0.017 27.4 13.0 45 224-268 158-216 (617)
231 TIGR00219 mreC rod shape-deter 30.3 80 0.0017 31.2 4.6 29 210-238 57-85 (283)
232 PRK10559 p-hydroxybenzoic acid 30.0 3.1E+02 0.0067 27.0 8.6 31 261-291 122-152 (310)
233 TIGR01000 bacteriocin_acc bact 29.9 6.4E+02 0.014 26.1 12.8 37 65-103 85-121 (457)
234 PF07716 bZIP_2: Basic region 29.9 94 0.002 23.2 3.9 26 211-236 24-49 (54)
235 PF12709 Kinetocho_Slk19: Cent 29.5 1.2E+02 0.0027 25.8 4.9 27 212-238 49-75 (87)
236 PHA03162 hypothetical protein; 29.2 60 0.0013 29.7 3.2 25 214-238 15-39 (135)
237 PF05557 MAD: Mitotic checkpoi 29.1 18 0.0004 39.5 0.0 110 194-303 188-319 (722)
238 PF05622 HOOK: HOOK protein; 29.1 18 0.0004 39.5 0.0 101 201-301 321-424 (713)
239 PF07716 bZIP_2: Basic region 28.7 1.3E+02 0.0029 22.3 4.6 34 201-234 21-54 (54)
240 PRK11546 zraP zinc resistance 28.7 1.1E+02 0.0024 28.0 4.9 42 200-241 56-97 (143)
241 TIGR02894 DNA_bind_RsfA transc 28.6 1.8E+02 0.0039 27.4 6.3 40 198-237 111-150 (161)
242 PRK12705 hypothetical protein; 28.6 8E+02 0.017 26.8 12.1 115 200-328 100-219 (508)
243 PF06637 PV-1: PV-1 protein (P 28.6 5.9E+02 0.013 27.4 10.6 103 206-314 282-388 (442)
244 PF10805 DUF2730: Protein of u 28.2 3.6E+02 0.0078 23.0 7.7 43 201-243 38-82 (106)
245 PF14817 HAUS5: HAUS augmin-li 28.1 6.9E+02 0.015 28.0 11.6 82 204-306 85-166 (632)
246 PRK01156 chromosome segregatio 28.0 8.9E+02 0.019 27.1 13.0 104 194-297 590-710 (895)
247 TIGR00414 serS seryl-tRNA synt 28.0 4.3E+02 0.0093 27.5 9.6 71 211-292 29-100 (418)
248 PRK00846 hypothetical protein; 27.9 1.8E+02 0.0039 24.2 5.5 39 64-102 12-50 (77)
249 PRK13169 DNA replication intia 27.8 1.2E+02 0.0026 26.6 4.8 40 195-234 5-44 (110)
250 PF11932 DUF3450: Protein of u 27.7 5.4E+02 0.012 24.5 9.7 86 195-280 53-143 (251)
251 TIGR01069 mutS2 MutS2 family p 27.5 8.2E+02 0.018 27.8 12.3 8 207-214 513-520 (771)
252 PF06008 Laminin_I: Laminin Do 27.3 5.6E+02 0.012 24.5 9.8 53 195-247 28-80 (264)
253 PRK00295 hypothetical protein; 27.1 1.6E+02 0.0035 23.4 5.0 32 65-96 5-36 (68)
254 PF13747 DUF4164: Domain of un 26.9 2E+02 0.0044 24.0 5.8 49 194-242 35-83 (89)
255 PF05529 Bap31: B-cell recepto 26.9 4E+02 0.0086 24.3 8.2 26 213-238 119-144 (192)
256 PF05837 CENP-H: Centromere pr 26.8 4E+02 0.0087 22.7 9.8 33 204-236 9-41 (106)
257 PTZ00464 SNF-7-like protein; P 26.7 1.4E+02 0.003 28.7 5.4 44 61-104 21-69 (211)
258 PF05335 DUF745: Protein of un 26.5 5.7E+02 0.012 24.3 11.4 84 196-279 72-162 (188)
259 PRK10246 exonuclease subunit S 25.9 1.1E+03 0.024 27.5 16.5 27 300-331 488-514 (1047)
260 KOG0971 Microtubule-associated 25.8 1E+03 0.023 28.5 12.6 102 194-295 234-352 (1243)
261 PF05377 FlaC_arch: Flagella a 25.4 1.5E+02 0.0033 23.3 4.5 31 207-237 2-32 (55)
262 PF11570 E2R135: Coiled-coil r 25.3 5.5E+02 0.012 23.7 10.9 87 197-297 14-113 (136)
263 TIGR02894 DNA_bind_RsfA transc 25.0 1.7E+02 0.0036 27.6 5.4 48 195-242 101-148 (161)
264 KOG0999 Microtubule-associated 25.0 1.1E+03 0.023 27.0 12.1 90 208-297 46-157 (772)
265 PF11544 Spc42p: Spindle pole 25.0 1.5E+02 0.0033 24.8 4.6 44 194-237 8-51 (76)
266 PF05667 DUF812: Protein of un 24.6 9.9E+02 0.022 26.5 13.6 9 14-22 145-153 (594)
267 PF03195 DUF260: Protein of un 24.6 52 0.0011 28.2 1.9 25 64-88 77-101 (101)
268 PF05557 MAD: Mitotic checkpoi 24.5 2.7E+02 0.0059 30.7 7.8 36 202-237 500-535 (722)
269 KOG4673 Transcription factor T 24.4 5.6E+02 0.012 29.7 10.0 40 194-233 342-381 (961)
270 PF10481 CENP-F_N: Cenp-F N-te 24.4 8E+02 0.017 25.3 11.3 43 196-238 86-128 (307)
271 PRK10476 multidrug resistance 24.0 7E+02 0.015 24.5 11.5 26 196-221 84-109 (346)
272 PF10473 CENP-F_leu_zip: Leuci 23.9 5.6E+02 0.012 23.4 15.2 39 200-238 54-92 (140)
273 KOG0249 LAR-interacting protei 23.7 4.1E+02 0.0089 30.8 8.9 30 207-236 93-122 (916)
274 PRK05431 seryl-tRNA synthetase 23.7 3.8E+02 0.0083 28.0 8.3 69 213-292 29-97 (425)
275 TIGR03495 phage_LysB phage lys 23.7 5.6E+02 0.012 23.3 9.7 37 205-241 19-55 (135)
276 PLN02678 seryl-tRNA synthetase 23.5 3.7E+02 0.0081 28.6 8.3 70 212-292 33-102 (448)
277 KOG1962 B-cell receptor-associ 23.5 6.7E+02 0.014 24.6 9.3 36 218-253 150-185 (216)
278 PF07139 DUF1387: Protein of u 23.3 4.5E+02 0.0097 27.1 8.4 76 195-294 179-255 (302)
279 PF10211 Ax_dynein_light: Axon 23.1 6.2E+02 0.013 23.6 8.9 63 216-278 124-187 (189)
280 COG0172 SerS Seryl-tRNA synthe 22.9 3.8E+02 0.0082 28.7 8.2 78 207-294 24-101 (429)
281 PF04859 DUF641: Plant protein 22.8 87 0.0019 28.3 3.1 20 196-215 99-118 (131)
282 PF10146 zf-C4H2: Zinc finger- 22.8 7.2E+02 0.016 24.3 13.6 18 287-304 86-103 (230)
283 PF15035 Rootletin: Ciliary ro 22.7 4.3E+02 0.0094 24.8 7.7 39 205-243 60-98 (182)
284 COG4717 Uncharacterized conser 22.7 9.1E+02 0.02 28.6 11.4 75 199-273 565-653 (984)
285 PRK10929 putative mechanosensi 22.7 1.4E+03 0.03 27.5 16.7 36 68-103 105-140 (1109)
286 PRK14127 cell division protein 22.6 2.3E+02 0.005 24.9 5.5 46 257-305 22-67 (109)
287 KOG0018 Structural maintenance 22.6 1E+03 0.022 28.7 12.0 96 198-293 655-750 (1141)
288 PRK11281 hypothetical protein; 22.5 4.7E+02 0.01 31.2 9.5 38 197-234 72-109 (1113)
289 PF13514 AAA_27: AAA domain 22.4 1.3E+03 0.028 27.0 13.5 107 206-313 612-718 (1111)
290 TIGR02231 conserved hypothetic 22.1 9.4E+02 0.02 25.4 11.7 39 197-235 70-108 (525)
291 PF10498 IFT57: Intra-flagella 22.1 2.7E+02 0.0059 28.8 6.8 70 194-263 276-358 (359)
292 TIGR02209 ftsL_broad cell divi 22.1 3.7E+02 0.0081 21.0 6.3 34 205-238 24-57 (85)
293 PF12709 Kinetocho_Slk19: Cent 21.8 2.1E+02 0.0045 24.5 4.9 37 64-100 48-84 (87)
294 KOG0240 Kinesin (SMY1 subfamil 21.8 1.1E+03 0.024 26.5 11.5 65 202-266 439-503 (607)
295 PF07795 DUF1635: Protein of u 21.7 5.5E+02 0.012 25.2 8.4 34 262-295 27-60 (214)
296 PF09766 FimP: Fms-interacting 21.6 5.7E+02 0.012 26.1 9.0 113 198-314 12-154 (355)
297 PF13600 DUF4140: N-terminal d 21.6 1.8E+02 0.004 23.8 4.6 34 202-235 67-100 (104)
298 PF07989 Microtub_assoc: Micro 21.6 4.5E+02 0.0098 21.4 8.4 23 214-236 2-24 (75)
299 TIGR03752 conj_TIGR03752 integ 21.5 9.2E+02 0.02 26.3 10.7 68 199-266 60-128 (472)
300 COG3064 TolA Membrane protein 21.5 2.8E+02 0.0062 29.1 6.7 32 275-306 144-175 (387)
301 PF05483 SCP-1: Synaptonemal c 21.5 8.3E+02 0.018 28.2 10.6 87 194-280 229-322 (786)
302 PRK11578 macrolide transporter 21.4 8.1E+02 0.018 24.3 10.9 6 319-324 191-196 (370)
303 PF09738 DUF2051: Double stran 21.0 8.9E+02 0.019 24.7 11.6 86 206-298 78-163 (302)
304 COG5302 Post-segregation antit 20.9 1.6E+02 0.0034 25.0 3.9 44 280-333 33-77 (80)
305 PF15290 Syntaphilin: Golgi-lo 20.9 1.6E+02 0.0034 30.2 4.7 40 196-235 122-161 (305)
306 PF06364 DUF1068: Protein of u 20.8 7.5E+02 0.016 23.7 10.6 82 218-306 81-162 (176)
307 PF01920 Prefoldin_2: Prefoldi 20.5 3.5E+02 0.0077 21.6 6.0 42 62-103 59-100 (106)
308 KOG4010 Coiled-coil protein TP 20.5 83 0.0018 30.6 2.6 33 190-222 42-75 (208)
309 KOG0964 Structural maintenance 20.5 5.5E+02 0.012 30.8 9.3 80 195-274 422-501 (1200)
310 COG2268 Uncharacterized protei 20.4 9.4E+02 0.02 26.7 10.6 35 279-313 425-460 (548)
311 KOG4360 Uncharacterized coiled 20.3 5.4E+02 0.012 28.6 8.8 45 194-238 222-266 (596)
312 cd00890 Prefoldin Prefoldin is 20.2 4.8E+02 0.01 21.6 6.9 37 271-307 90-126 (129)
313 PF13863 DUF4200: Domain of un 20.2 5.2E+02 0.011 21.6 12.5 89 204-302 6-94 (126)
314 PF04880 NUDE_C: NUDE protein, 20.2 1.8E+02 0.0039 27.3 4.7 24 213-236 1-24 (166)
315 PF06320 GCN5L1: GCN5-like pro 20.1 6E+02 0.013 22.3 9.9 29 285-313 57-85 (121)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.25 E-value=0.0072 Score=53.81 Aligned_cols=105 Identities=20% Similarity=0.420 Sum_probs=75.6
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHH----------HHHHHHHHHhhhhhHHHHHhhHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQ----------KEKEEMTQSLNKLGEEVQASKAEAI 271 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~----------~~e~e~~~kl~~~~eEl~~s~~r~a 271 (384)
.....|..|-..+..+|.++.+|..-|..|..++..+-..+..++ ..-+.+..++..|+++|+.+..+..
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666665543322222222 2223666799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 272 QLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 272 r~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
.+.++|+-+...-+.+|-=++.|--++++|-+=-+
T Consensus 98 e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 98 ETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999965433
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.09 E-value=0.032 Score=58.50 Aligned_cols=39 Identities=46% Similarity=0.629 Sum_probs=38.1
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.|..+++.||.++|+||.++++||..+|..|.++..+|+
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe 65 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELE 65 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999998
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.57 E-value=0.0095 Score=70.92 Aligned_cols=104 Identities=26% Similarity=0.391 Sum_probs=61.4
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAA 280 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aa 280 (384)
.....++.+|--.|.+.|..+..+...+..|..+|.+.-..+. +....-..+.+.+.........+.++++-.
T Consensus 1269 ~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle-------~e~r~k~~l~~~l~~l~~e~~~l~e~leee 1341 (1930)
T KOG0161|consen 1269 SRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLE-------EETREKSALENALRQLEHELDLLREQLEEE 1341 (1930)
T ss_pred HHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444332222 111111223333333333356788999999
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 281 EGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 281 e~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
+.++..|+-.+.++.+|..|||+=.+.-..-
T Consensus 1342 ~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~ 1372 (1930)
T KOG0161|consen 1342 QEAKNELERKLSKANAELAQWKKKFEEEVLQ 1372 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766554
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.02 E-value=0.0063 Score=67.29 Aligned_cols=111 Identities=31% Similarity=0.462 Sum_probs=0.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQL 273 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~ 273 (384)
++|...+.+...++.+|...|.+.|+.+..+...+..|..+|.++-..+..-.....-+..+|..+.++++ .+
T Consensus 204 ~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~-------~L 276 (859)
T PF01576_consen 204 NELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELE-------QL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHH-------HH
Confidence 67888888999999999999999999999999999999999988776665444444455556666666665 67
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 274 KEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 274 ~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
.++|+.-+.++..|+..|.++-.+..+||+-.+.-+..
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 88999889999999999999999999999998886665
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.68 E-value=4.8 Score=44.08 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=25.4
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
..+.+|+.++..++.++..+..++..++.....+..++.
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 708 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELE 708 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777666666665555554
No 6
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.57 E-value=0.53 Score=53.79 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred cccHHhhhhchhHHHHHHhhhhhh--------------HHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH---Hh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEK--------------EKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQ---SL 256 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDK--------------EtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~---kl 256 (384)
..|..+|+.++.-|.-|++.|.+| +.|+.-+-+||..+-.+.+.|.+.+...++--+.|.. +-
T Consensus 173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~y 252 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTY 252 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCcc
Confidence 445555555555555555544444 4444444444444433333444444333333332221 11
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
.--..+++-++.|+.-+.+--++-.+.++=||++|++||.|+|
T Consensus 253 kerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse 295 (1195)
T KOG4643|consen 253 KERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSE 295 (1195)
T ss_pred chhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 1122355667888888888888888899999999999999994
No 7
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.56 E-value=1.4 Score=46.46 Aligned_cols=112 Identities=21% Similarity=0.324 Sum_probs=72.8
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH----
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA---- 270 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~---- 270 (384)
.+...|.....|+...|.+|-....|+..|....+.|+.+|...-.++...+..+..+......|..+|.+....-
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 3445577777788888888888888888888888888888877777777666666666665555555555443332
Q ss_pred ---H-------HHHHHHH----HHHHHHH---HHHHHHhhhhhcHHHHHHhHH
Q 016680 271 ---I-------QLKEKLE----AAEGAKK---ALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 271 ---a-------r~~EqL~----Aae~A~~---~lEaElrRLRVQseQWRKAAE 306 (384)
. .+...|. -++.|+. .+-.|++++|.+.+|=+-+..
T Consensus 358 ~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 358 AEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111121 2344554 356688899999888765543
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.77 E-value=2.4 Score=46.65 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=26.2
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 255 SLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
++..+..++.........+..+++..+.....++.++..++.+.+++....+
T Consensus 876 ~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 927 (1164)
T TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455555555555555555555555555544433
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=92.21 E-value=4.8 Score=44.05 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHHHc
Q 016680 270 AIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILA 313 (384)
Q Consensus 270 ~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAvLs 313 (384)
.....++++..+.-.+.|..++..|+...++|.++|+.+-+-+.
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~ 568 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555777777778888999999999999999998887655443
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.04 E-value=5.4 Score=43.99 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHH
Q 016680 244 TAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 244 ~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRK 303 (384)
.......++..++..+..+++........+..++...+.....++..+..+..+.+.|..
T Consensus 872 ~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 931 (1164)
T TIGR02169 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555555555555555555555554443
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.82 E-value=4.9 Score=38.61 Aligned_cols=95 Identities=26% Similarity=0.397 Sum_probs=74.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
....+...+.+|..++..+-...++|.++...|..|..+|.+.-.... ...+.....+..+..|+.+-...-++...
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~---~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD---EEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH---HHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 356688899999999999999999999999999999999987655443 33344556777888888887776666666
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 016680 276 KLEAAEGAKKALEMEMKK 293 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrR 293 (384)
....--..|-.|++|+.-
T Consensus 284 ey~~Ll~~K~~Ld~EIat 301 (312)
T PF00038_consen 284 EYQELLDVKLALDAEIAT 301 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 667777788889999843
No 12
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.53 E-value=2.8 Score=45.28 Aligned_cols=76 Identities=28% Similarity=0.394 Sum_probs=43.8
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.++-++.+..+||++||.++.+++..+...-..--.+-.-|.+.-+++..++..-.. +++|+..-.+.-.|+-
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~-------le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKA-------LEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH-------HHHHHHHHHHHhhhhH
Confidence 455667777777777777777777777776666555555555555555444443333 4444444443334444
Q ss_pred HHH
Q 016680 275 EKL 277 (384)
Q Consensus 275 EqL 277 (384)
.+|
T Consensus 183 ~~l 185 (546)
T KOG0977|consen 183 EEL 185 (546)
T ss_pred HHH
Confidence 444
No 13
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.17 E-value=5.7 Score=36.01 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=68.2
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQL 273 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~ 273 (384)
....+|+...++-+.|+-+....|.+|+.+....+.+..+...+-.+|...++.-..+...|..+..||+-...--.-+
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999998888899899999999999999999988664433333
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.09 E-value=26 Score=40.71 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=62.5
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH-HH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA-IQ 272 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~-ar 272 (384)
..|+.+|......|..+.+..-+.|..|..+......++.++..+..+++.++...+. +..+.+.-..+. ..
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQR-------LKNEREQLKQEIEEA 675 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777766666666666555555444443333 333333332222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHH
Q 016680 273 LKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADA 307 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEa 307 (384)
+.++....+.+-..++.++..+.-|.++|..+-..
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~ 710 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKE 710 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666655433
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.52 E-value=6.2 Score=38.64 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=35.3
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
..+..|++...++..++..|.+++.++..+-.+--.|..+|.++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~ 71 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEI 71 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888889999898888888888888877777777777544
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.46 E-value=8.1 Score=41.90 Aligned_cols=48 Identities=31% Similarity=0.377 Sum_probs=29.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
.|..+|.....+...|+...-+.....+.+..||+.|+.+..++...|
T Consensus 175 ~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 175 RLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666667777666665554433
No 17
>PRK11637 AmiB activator; Provisional
Probab=89.04 E-value=6.6 Score=40.01 Aligned_cols=87 Identities=14% Similarity=0.251 Sum_probs=48.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH----
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA---- 270 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~---- 270 (384)
++..+|...+.+|..++..|-+...++..+..+...|..+|..+...|......-..+..++..+..++.....+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666655555555555555555555555555555554433
Q ss_pred HHHHHHHHHHH
Q 016680 271 IQLKEKLEAAE 281 (384)
Q Consensus 271 ar~~EqL~Aae 281 (384)
..+..++.+..
T Consensus 124 ~~l~~rlra~Y 134 (428)
T PRK11637 124 RLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHH
Confidence 24444444443
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.84 E-value=5.8 Score=43.89 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=26.1
Q ss_pred cHHhhhhchhHH-------HHHHhhhhhhHH-------HHHHHHHHhHHHHHHHHHh
Q 016680 196 SIHELTLTKDEI-------NLLQNKLDEKEK-------QLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 196 l~~EL~~~~~eI-------~eLKA~LmDKEt-------ELq~l~~ENe~LK~ql~Ea 238 (384)
|+.|+++.++|| .+|+-.|.-.+. +|+.+..+|+.|++.+.+.
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554 455555443332 4777888888888887644
No 19
>PRK11637 AmiB activator; Provisional
Probab=88.50 E-value=5.3 Score=40.70 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=18.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.+..+++....+|..++..+-+.+.+|..+..+...+..+|+
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.04 E-value=9.4 Score=42.32 Aligned_cols=100 Identities=21% Similarity=0.370 Sum_probs=68.9
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-------HhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN-------EASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQ 272 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~-------Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar 272 (384)
..+...||..|| +||+..-.-=..|+++|. .+..++...+..-+++..|+.-|....++=...-..
T Consensus 420 ~~rLE~dvkkLr-------aeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 420 ISRLEADVKKLR-------AELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred HHHHHHHHHHHH-------HHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555 456666666666777754 445566677777778888888888777665555677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHH
Q 016680 273 LKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAAS 310 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaA 310 (384)
|--+|..-+.++..+|+.|...|.+ ||++|++||
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~----r~~ee~~aa 526 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKA----RKEEEEKAA 526 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHhhh
Confidence 8888988899999999999877765 455555444
No 21
>PRK09039 hypothetical protein; Validated
Probab=87.90 E-value=14 Score=37.34 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
+.|..||.+.|++=.+.|+..+-.++|-+.-...-++|.|=
T Consensus 147 ~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 147 AALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666667777777777777777643
No 22
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.67 E-value=6.9 Score=39.06 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=66.5
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH-HHHHHHH
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA-IQLKEKL 277 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~-ar~~EqL 277 (384)
.|..+...|..|+..|..+..+|+.-..+.+.|..+|..-...+...+...+....++.....++.+-...+ ..|++.+
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~ 88 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAE 88 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999888853222222112111111122222222332222221 3344433
Q ss_pred HHHHHHHHHHH-------HHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 278 EAAEGAKKALE-------MEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 278 ~Aae~A~~~lE-------aElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
-+-++|..+|. .|||-++.=..-=+.-.+|-.-+|+.
T Consensus 89 P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~ 132 (344)
T PF12777_consen 89 PALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGP 132 (344)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhc
Confidence 34444444443 58888876666666677777766653
No 23
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.47 E-value=25 Score=33.09 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=67.9
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEA 279 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~A 279 (384)
.+..+.+|.++|.+....+..++.+..||..|..-|..|-.++...+..-.. ...-...|.....+...+..+|..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l~~ 104 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKELKD 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999998887775555422222111 112222333344445555666666
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 280 AEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 280 ae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
-+--.+.|+--+.+|--..+.|..--+
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665444
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.84 E-value=19 Score=34.58 Aligned_cols=95 Identities=24% Similarity=0.403 Sum_probs=55.4
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh---------------hhhhhhHHHHHHHHHHHhhhhhHHHHHhhHH
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA---------------SSNISTAQKEKEEMTQSLNKLGEEVQASKAE 269 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea---------------~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r 269 (384)
.++..|=.+|..-=..+..|.++|..|..+|... -.+|..++..-.++......+..+++.....
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e 83 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEE 83 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHH
Confidence 3444455555544455666666666666666411 2233455555555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 270 AIQLKEKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 270 ~ar~~EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
+..+..+++.....+..|+.++..||-+.+
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 666666666666666677777777664443
No 25
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.50 E-value=23 Score=33.42 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=65.6
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGA 283 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A 283 (384)
-..|.+|+..|.|...+|+.+.-||..|+..-..-..+|.-..-.+.++-.-+....+|++--..+--+..++..+.+.-
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~k 90 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERK 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999998765432222333333344544455566666665555555555666666665
Q ss_pred HHHHHHHHhhhhhcHHHHHH
Q 016680 284 KKALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 284 ~~~lEaElrRLRVQseQWRK 303 (384)
-...++||.+++-+.-.-.+
T Consensus 91 lk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 91 LKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666677666665554444
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.24 E-value=30 Score=37.77 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=44.5
Q ss_pred HHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHh-HHHHHHH
Q 016680 252 MTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKA-ADAAASI 311 (384)
Q Consensus 252 ~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKA-AEaAaAv 311 (384)
+...|-.+.+-+..|...+.-+...|.++-..+.-.-+||-+-|.|.+|-+.. |++.+++
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33456666677777777778888889888888888889998888888887653 3544443
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.02 E-value=22 Score=30.92 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=30.4
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
..++.....++..|+....+-+..++.+..+.......+.+|
T Consensus 2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~A 43 (132)
T PF07926_consen 2 ESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEA 43 (132)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788888888888888888777777766665544
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.74 E-value=7.9 Score=40.77 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=41.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
+..+++..+..|..-+-.+--.+++|..+..++..|..+|-+....+...+..-.++...|..+..+- .++..+|++
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~ 119 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAE 119 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444333 234456777
Q ss_pred HHHHHHH
Q 016680 276 KLEAAEG 282 (384)
Q Consensus 276 qL~Aae~ 282 (384)
+|+|++.
T Consensus 120 ~L~A~~r 126 (420)
T COG4942 120 QLAALQR 126 (420)
T ss_pred HHHHHHh
Confidence 7777665
No 29
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=85.35 E-value=13 Score=42.81 Aligned_cols=96 Identities=25% Similarity=0.398 Sum_probs=46.2
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHH--------------HHHHHHHHhhhhhHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQK--------------EKEEMTQSLNKLGEE 262 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~--------------~e~e~~~kl~~~~eE 262 (384)
..++.....++..|+..+.+.+.++..+....+.|..++.+...++...+. .-+++...+..++.+
T Consensus 389 ~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 468 (1163)
T COG1196 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555555555555444333333222 223333344444444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 263 VQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 263 l~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
+........++...+...+.....|++..+
T Consensus 469 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 469 LAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444555555555555555555544
No 30
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.20 E-value=27 Score=32.98 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=38.1
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..|...|......+..+..+|-+++.+|..+.+++..|+.-+.
T Consensus 71 r~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~ 113 (194)
T PF15619_consen 71 RVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE 113 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999987653
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=85.19 E-value=20 Score=44.22 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=44.2
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
|...|+++..++.-|..++.|....+.-+......|..+|.+...+++.-++....+-.....+.+++..-..+-.....
T Consensus 1067 l~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~ 1146 (1930)
T KOG0161|consen 1067 LDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGG 1146 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444444444444444433333333333333333333333332111122
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcHHHH
Q 016680 276 KLEAAEGAKKALEMEMKKLRVQTDQW 301 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrRLRVQseQW 301 (384)
...+-+-++...|+|+.+||-.-+.=
T Consensus 1147 ~t~~q~e~~~k~e~e~~~l~~~leee 1172 (1930)
T KOG0161|consen 1147 TTAAQLELNKKREAEVQKLRRDLEEE 1172 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222344445555555555444433
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.92 E-value=29 Score=31.20 Aligned_cols=89 Identities=21% Similarity=0.414 Sum_probs=40.0
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEK 276 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~Eq 276 (384)
..-|.....+++.+...+.+.++++..+.+.+..+.......-..+...+..-..+..++..+..++.++......+..+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 166 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQ 166 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433333334444444444444444444444444444444444444
Q ss_pred HHHHHHHHH
Q 016680 277 LEAAEGAKK 285 (384)
Q Consensus 277 L~Aae~A~~ 285 (384)
+...+....
T Consensus 167 ~~~~~~~~~ 175 (191)
T PF04156_consen 167 LERLQENLQ 175 (191)
T ss_pred HHHHHHHHH
Confidence 444444333
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.74 E-value=42 Score=39.36 Aligned_cols=116 Identities=13% Similarity=0.199 Sum_probs=76.9
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHH---HHHHHHHHhhhhhHHHHHh--hHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQK---EKEEMTQSLNKLGEEVQAS--KAEA 270 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~---~e~e~~~kl~~~~eEl~~s--~~r~ 270 (384)
+..++......++.|..+|...+..+....+.-..+...+.....++..... .......++..+..+++.- ..+.
T Consensus 417 ~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (1311)
T TIGR00606 417 LQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLT 496 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566667777777777777777777666666666555555544333332211 2222333555566666544 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
..+..++...+.-...||.++.+|+-+-.+-.+.|+..|-+
T Consensus 497 ~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~ 537 (1311)
T TIGR00606 497 ETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQM 537 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888889999999999999999888877654
No 34
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.70 E-value=29 Score=31.11 Aligned_cols=96 Identities=23% Similarity=0.276 Sum_probs=51.5
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh-----------------hhhhhHHHHHHHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS-----------------SNISTAQKEKEEMTQSL 256 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~-----------------~~~~~A~~~e~e~~~kl 256 (384)
+.++.++..++.+|..|..++--.|.+|..+...-..++..+.+.. .++..+...-.++.-+|
T Consensus 24 K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 24 KQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666555555554322 12233344444444555
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGAKKALEM 289 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEa 289 (384)
.++...++.+.+++..+-.+...-+.=-++|+.
T Consensus 104 ~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 104 READVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555554444444444443
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.65 E-value=25 Score=34.91 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=5.3
Q ss_pred HHHhhhhhcHHHH
Q 016680 289 MEMKKLRVQTDQW 301 (384)
Q Consensus 289 aElrRLRVQseQW 301 (384)
.|+.+|+-..+.+
T Consensus 276 ~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 276 SEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.63 E-value=9.1 Score=36.29 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=34.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.+..+|......+..+...|.+.+..+..+..++..|...|.
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888888888888888875
No 37
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.60 E-value=34 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=11.1
Q ss_pred HhhHHHhHHHHHHHHHHHHHH
Q 016680 69 DLESQLGQAQEELKNLKDQLA 89 (384)
Q Consensus 69 eLesql~qaqedLKk~keQLa 89 (384)
.++.++.+++.++..++.++.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 38
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.46 E-value=43 Score=35.48 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=23.6
Q ss_pred hhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 66 RIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 66 r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
+|.+-.-++.+++.+||.++..+++.+..-.+..+++.
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~ 90 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLK 90 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444555566666666666666666666666666665
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=21 Score=39.55 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hcHHHHHHh----HHHHHHHHccCc
Q 016680 267 KAEAIQLKEKLEAAEGAKKALEMEMKKLR--------------VQTDQWKKA----ADAAASILAGGV 316 (384)
Q Consensus 267 ~~r~ar~~EqL~Aae~A~~~lEaElrRLR--------------VQseQWRKA----AEaAaAvLs~g~ 316 (384)
..+..+|.-.|.-...--++|+.+|.+|| .+-++.++- ||..+.+..|.+
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~gik~GDv 547 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDV 547 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHhhccccCcE
Confidence 34445666666555555567777777777 666666644 566777666553
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.12 E-value=39 Score=34.07 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=45.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhcHHHHHHh
Q 016680 231 LKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKA----LEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 231 LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~----lEaElrRLRVQseQWRKA 304 (384)
|+.+|.+...+|...+..-.+...+|..+...++....+-..+.+++..++.-.+. --.|+.+|+.+.+.|.+.
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555556666666666664443 456889999999888774
No 41
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.85 E-value=25 Score=41.60 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=19.1
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSL 231 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~L 231 (384)
.+..++.....++..+..++.+.+.+++.+..+-+.|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 287 RARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555555554444
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.62 E-value=17 Score=34.58 Aligned_cols=77 Identities=12% Similarity=0.248 Sum_probs=41.0
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
+..-|...+.++.+|+++|-+...++. +.+..|...+... .+.-.+|++.+ .++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~------------------~~~~~~L~~~n---~~L~~ 146 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQS------------------DSVINGLKEEN---QKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH------------------HHHHHHHHHHH---HHHHH
Confidence 455566666677777766666554432 2222333322221 11122233333 36677
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 016680 276 KLEAAEGAKKALEMEMKKLRV 296 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrRLRV 296 (384)
+|.-++.-+..+++++..++-
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778888766653
No 43
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=82.49 E-value=11 Score=38.72 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=34.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-------hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 219 KQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLN-------KLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 219 tELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~-------~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
++|..-++=|-.||.-+--.+. ++++.... ||-++++++..+-+...|| +
T Consensus 151 ~ql~iqt~vNsELK~LlVASvg---------ddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq--------------~ 207 (383)
T KOG4074|consen 151 KQLNIQTKVNSELKRLLVASVG---------DDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQ--------------S 207 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--------------H
Confidence 3455566677777776532221 23333333 3334444444444444444 4
Q ss_pred hhhhhcHHHHHH
Q 016680 292 KKLRVQTDQWKK 303 (384)
Q Consensus 292 rRLRVQseQWRK 303 (384)
-|||.|||.||-
T Consensus 208 erl~iqcdVWrs 219 (383)
T KOG4074|consen 208 ERLRIQCDVWRS 219 (383)
T ss_pred HHHhhHHHHHHH
Confidence 699999999995
No 44
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.23 E-value=28 Score=32.59 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
+|.++-.+|+.+..+|+.|+.++++.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555443
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.18 E-value=48 Score=38.42 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=16.3
Q ss_pred hHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 68 ADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKL 102 (384)
Q Consensus 68 seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el 102 (384)
.+|+.+|..++.++..+...+..+...-..+.+.+
T Consensus 670 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1163)
T COG1196 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLL 704 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444444444444444444444444443
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.95 E-value=47 Score=33.09 Aligned_cols=46 Identities=30% Similarity=0.394 Sum_probs=18.8
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 255 SLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
+|..+..++....+..+.+..+|...+..-+++.+++..|..|-.+
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333444444444444444444444444443333
No 47
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.95 E-value=26 Score=30.74 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=17.5
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..++......+.-|+.+|.+++.++..+...--.|..++
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443
No 48
>PRK02224 chromosome segregation protein; Provisional
Probab=80.50 E-value=44 Score=36.78 Aligned_cols=96 Identities=15% Similarity=0.271 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 016680 219 KQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA-------IQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 219 tELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~-------ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+..+..++..|..++.+...++..+...-......+..+..+++...... ..+...|...+.....+-.++
T Consensus 349 ~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~ 428 (880)
T PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444555555555432221 233344444455555555555
Q ss_pred hhhhhcHHHHHHhHHHHHHHHcc
Q 016680 292 KKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 292 rRLRVQseQWRKAAEaAaAvLs~ 314 (384)
..++.....++++-+.+=..|..
T Consensus 429 ~~~~~~~~~~~~~l~~~~~~l~~ 451 (880)
T PRK02224 429 AELEATLRTARERVEEAEALLEA 451 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666777788887777665644
No 49
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.48 E-value=59 Score=31.84 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=21.4
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEK 101 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~e 101 (384)
.-+..|+.. .++.+|..+..++..+++...+.+..
T Consensus 69 ~~L~~ld~~--~~~~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 69 QVLVELDAT--DVEADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred CeEEEEccc--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455543 55777888888887776665544433
No 50
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.30 E-value=7.8 Score=38.64 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH---HHHHHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA---IQLKEKLEAAEG 282 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~---ar~~EqL~Aae~ 282 (384)
--+--|+++...|-++.-|.+||+.|.++-.---...+.-=.+-.+..+.|+.+.++|-+++.-- .+|.|+-.++..
T Consensus 84 aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~eee~~~~g 163 (292)
T KOG4005|consen 84 ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEEENASAG 163 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhhhhhccC
Confidence 34566888999999999999999999877543333333444666788888999999988886532 566666554443
No 51
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.24 E-value=74 Score=32.91 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 223 GMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 223 ~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.+...-..|++.+..-...+.........+..++..+..+..+...+-.++.++|........+++.|..
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333444434444444444444444444444445666666666666666555543
No 52
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=80.14 E-value=17 Score=29.30 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=33.3
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
-..|-+|+..++.|.+|-+.|..+--.-...|...++...+.-..+..+...+.........+.+.|
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666667777777776554444444444455555533333333333333333333333333
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.26 E-value=50 Score=31.76 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=60.9
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
|..-=.+..++...|+..+.--|-.-+.+..++..|+.++.-.-..+.-|++-+++ |..+...+......-..+-.
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eE----ledLk~~~~~lEE~~~~L~a 88 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEE----LEDLKTLAKSLEEENRSLLA 88 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33334466678888888888888888888888888888887655555566665555 33334333333333345555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc
Q 016680 276 KLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrRLRVQ 297 (384)
|.+-.+.-+.-|.++|--|..+
T Consensus 89 q~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 89 QARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666555443
No 54
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.25 E-value=20 Score=35.80 Aligned_cols=41 Identities=29% Similarity=0.302 Sum_probs=20.6
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
..+..||.....+..+|...|...|.+...+.++...|..+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555554444444444
No 55
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.20 E-value=45 Score=29.49 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=49.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH---HHHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEE---MTQSLNKLGEEVQASKAEAIQLKEKLEAAE 281 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e---~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae 281 (384)
.-|..|.+.|--+|.|++.+.+++..|..+=..+..+|-..-..-++ ....+..+..++..-..|-..+=+=|.--.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 35677888888888888888888888877766666655432222222 222444455555555444433332222222
Q ss_pred HHHHHHHHHHhhhh
Q 016680 282 GAKKALEMEMKKLR 295 (384)
Q Consensus 282 ~A~~~lEaElrRLR 295 (384)
.-.++|.+.+.-||
T Consensus 96 E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 96 EEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 23345555554443
No 56
>PRK03918 chromosome segregation protein; Provisional
Probab=79.10 E-value=34 Score=37.40 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=29.3
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHH-----HHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMA-----QENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~-----~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
|.....+|..|+..|-..+.++..+. ++.+.|...+.+.-..+......-......+..+..++++.
T Consensus 628 l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443 33344444444444444444444444444555555555544
No 57
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.09 E-value=10 Score=33.92 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=28.6
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
...||...+.+|..|+..|.....++..+..+...|.+.+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4556777888888888777777777777766666666654
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.83 E-value=36 Score=37.22 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=28.9
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 256 LNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 256 l~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
+.+|..=++.+..|...|+.|.+ ..+..|..|+|+||++..
T Consensus 396 i~kL~~~v~~s~~rl~~L~~qWe---~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 396 IAKLQALVEASEQRLVELAQQWE---KHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHh
Confidence 34455556667777777777764 566789999999997644
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.47 E-value=50 Score=29.65 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=4.2
Q ss_pred chhHHHHHHhhh
Q 016680 203 TKDEINLLQNKL 214 (384)
Q Consensus 203 ~~~eI~eLKA~L 214 (384)
....+.++...|
T Consensus 100 l~~~~~~~~~~l 111 (191)
T PF04156_consen 100 LQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 60
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.30 E-value=25 Score=36.75 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=26.7
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
...+|.+|+++|...+.+|+.+.++...|..++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888888888888888888888877774
No 61
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.58 E-value=28 Score=39.32 Aligned_cols=112 Identities=19% Similarity=0.260 Sum_probs=76.0
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHH-------HHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLK-------KQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASK 267 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK-------~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~ 267 (384)
.|..|| +...++..|...+...-.+..++.. .+... .+...+..++...+..-+++...+..+..++++-.
T Consensus 78 ~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~ 155 (775)
T PF10174_consen 78 ALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKAD 155 (775)
T ss_pred HHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788 7778888888877766655554443 33333 22234455555556666778888888888888888
Q ss_pred HHHHHHHHHHH-------HHHH------HHHHHHHHHhhhhhcHHHHHHhHHHH
Q 016680 268 AEAIQLKEKLE-------AAEG------AKKALEMEMKKLRVQTDQWKKAADAA 308 (384)
Q Consensus 268 ~r~ar~~EqL~-------Aae~------A~~~lEaElrRLRVQseQWRKAAEaA 308 (384)
....++.+.|. +... .=.++|+.+-+|.+..++|-++.-.+
T Consensus 156 eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~ 209 (775)
T PF10174_consen 156 EEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEA 209 (775)
T ss_pred HHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88888888773 1111 11257888999999999999988433
No 62
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.27 E-value=19 Score=30.04 Aligned_cols=28 Identities=43% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 272 QLKEKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 272 r~~EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
....+.-|+...+..|..||++|++|..
T Consensus 42 kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 42 KADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666665543
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.07 E-value=63 Score=38.00 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=56.4
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh---hhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA---SSNISTAQKEKEEMTQSLNKLGEEVQASKAEA 270 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea---~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ 270 (384)
.+|..++...+.++..|...+.+.-.+...+..+...|+.++++. ...+...-....++...|..+..++.......
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555555555555555553333321 11111111122233334444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
..+.++|.-...-...+..++.++|.+.++=-..+....-.
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1311)
T TIGR00606 905 KDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVND 945 (1311)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555566666665555544444444333
No 64
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=76.77 E-value=15 Score=33.73 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=13.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
++...|..+..++..|...|..++..|..+..++..|+..+..
T Consensus 92 el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 92 ELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666666666544
No 65
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.41 E-value=30 Score=34.57 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=47.3
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHH----HHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAE----AIQLKE 275 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r----~ar~~E 275 (384)
+...++.|.+|...+-+-+++|++|....+.+.+++.+.-.+|. +...++.++..+++....+ -.-+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~-------~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID-------QSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888888888877777777766655444 3333344444444444332 234455
Q ss_pred HHHHHH
Q 016680 276 KLEAAE 281 (384)
Q Consensus 276 qL~Aae 281 (384)
|++|++
T Consensus 106 raRAmq 111 (265)
T COG3883 106 RARAMQ 111 (265)
T ss_pred HHHHHH
Confidence 555544
No 66
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.16 E-value=48 Score=34.23 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=8.1
Q ss_pred HHHHHHhhhhhHHHHHhh
Q 016680 250 EEMTQSLNKLGEEVQASK 267 (384)
Q Consensus 250 ~e~~~kl~~~~eEl~~s~ 267 (384)
.+..-+|..+.+++++-.
T Consensus 375 ~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 375 VDNAEELAKLQDELDKIV 392 (562)
T ss_pred hchHHHHHHHHHHHHHHH
Confidence 333344444555544443
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.80 E-value=47 Score=36.29 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=36.9
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIST 244 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~ 244 (384)
.++..=|...++++.-+|++.-..|-++.-|-.||..|..+|..+-..+..
T Consensus 144 ~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 144 DDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445566777778888888888888888888888888888877776554443
No 68
>PRK09039 hypothetical protein; Validated
Probab=75.74 E-value=48 Score=33.54 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHH
Q 016680 236 NEASSNISTAQKEKEEMTQSLNKLGEEVQASKAE 269 (384)
Q Consensus 236 ~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r 269 (384)
.++-..|...+..-..+...|..+..+|+.+..+
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444333
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.56 E-value=1.5e+02 Score=35.88 Aligned_cols=39 Identities=31% Similarity=0.406 Sum_probs=32.1
Q ss_pred hhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 66 RIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEK 104 (384)
Q Consensus 66 r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~K 104 (384)
--.+|.+.+.+++.-|+-+++-.-+|-.++..|+..|++
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~ 1458 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQ 1458 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345677777888888899999888888899999999984
No 70
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.42 E-value=28 Score=27.99 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=42.0
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
+.+.+|..|+.+|.--...+...-.+|..|..+=..+.+.+..|-.--.++..++.-+..||+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999888888888888888888887666666555444444444444444444443
No 71
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.92 E-value=50 Score=31.85 Aligned_cols=90 Identities=31% Similarity=0.424 Sum_probs=48.5
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH-------HhhhhhHHHHHhhHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQ-------SLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~-------kl~~~~eEl~~s~~r~ar~~ 274 (384)
-+.-||..||..|-|--+|+..=..|.=.|+-++.++...+........++.. +|.....||.....-+..+.
T Consensus 7 qk~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLr 86 (202)
T PF06818_consen 7 QKSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLR 86 (202)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhh
Confidence 34556777777777777776666666666777776665554433333333333 23333444443333333344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQT 298 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQs 298 (384)
+++. .||+|+..||...
T Consensus 87 ekl~-------~le~El~~Lr~~l 103 (202)
T PF06818_consen 87 EKLG-------QLEAELAELREEL 103 (202)
T ss_pred hhhh-------hhHHHHHHHHHHH
Confidence 4432 3677777776543
No 72
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=74.47 E-value=61 Score=32.47 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=29.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
....++.....++..|+..--....+|..+..+++.|..++...-.+.
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777777777766544433
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.11 E-value=39 Score=39.59 Aligned_cols=103 Identities=23% Similarity=0.318 Sum_probs=69.6
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-----------------------------------Hhhhh
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN-----------------------------------EASSN 241 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~-----------------------------------Ea~~~ 241 (384)
+.++......|.+++..|-.|++++..+.+.++.|+.... .|-..
T Consensus 328 ~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~ 407 (1174)
T KOG0933|consen 328 EEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKIT 407 (1174)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHH
Confidence 4556677777777777777777777777777777755442 34445
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 242 ISTAQKEKEEMTQSLNKLGEEVQASK-------AEAIQLKEKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 242 ~~~A~~~e~e~~~kl~~~~eEl~~s~-------~r~ar~~EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
++.|.+....+.+|+..+..||.... ++....-+.|++.+.--+.+++.|+-|.---.
T Consensus 408 ~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 408 LSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 56677777777777777777766553 33344557777887777778888777765544
No 74
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.11 E-value=74 Score=30.75 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=27.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
+...|+..+..||.-||+.|-+--..|.+.......|...+
T Consensus 21 e~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~ 61 (202)
T PF06818_consen 21 ESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL 61 (202)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45667777777888777777776666666666666665544
No 75
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=74.03 E-value=15 Score=29.17 Aligned_cols=44 Identities=25% Similarity=0.495 Sum_probs=36.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHH
Q 016680 259 LGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 259 ~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWR 302 (384)
+.+||.+-..---.+..+|..|+.=|.+|++||.+|+-+.+.-|
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67778765544466778999999999999999999999988755
No 76
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=73.39 E-value=22 Score=42.23 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=34.3
Q ss_pred hcccchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 61 KKLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 61 kk~~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
+.++.+++..+.=|..-..|+..+...++.|+++++.|.+...
T Consensus 1521 ~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~ 1563 (1758)
T KOG0994|consen 1521 QERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKG 1563 (1758)
T ss_pred HHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556677778888888888888999999999999888876554
No 77
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.97 E-value=33 Score=39.56 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=45.8
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQ 246 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~ 246 (384)
.++..|+-.++.|-.|..++...|+++|.+.+-...+..++.++-.+|+...
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5778899999999999999999999999999999999999988776665443
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.81 E-value=1.1e+02 Score=36.52 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=40.5
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
..++.+|......+++.++.+-.-|.||..+..--+.+.+.+.++-..+.+..+-..+-...|+.++.++.
T Consensus 482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~ 552 (1293)
T KOG0996|consen 482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELP 552 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566676777777777777777777776666665555555555544444444433333344444444443
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.41 E-value=38 Score=36.15 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=37.4
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..|.+++.....+-.-++|+|-.+|.+|+.|.+||-.|..+.-
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999999999999998877653
No 80
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.88 E-value=77 Score=28.61 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=74.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHH--------HHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEK--------QLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEt--------ELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
.++-.+...+..+..+..+|..||. +...+.-+|..|...|.|=..++..-+..--....-|..+.+-+.-.
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~ 89 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888875 66777888888888887666666555555445555555566656555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHh
Q 016680 267 KAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 267 ~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKA 304 (384)
...-..+...|...+.....+..++.+++.+.+.-|+.
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~ 127 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQ 127 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666777766666677777777777776665554
No 81
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.62 E-value=90 Score=36.53 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=31.2
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.+++..|+.....|..++..+.....+++........|+++..
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777778888888888888777777777666666666554
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=70.16 E-value=58 Score=35.89 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=65.2
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH-Hh---hhhhHHHHHh--h
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQ-SL---NKLGEEVQAS--K 267 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~-kl---~~~~eEl~~s--~ 267 (384)
++|...|......+..||..|.-|+.|++++...+..+...|....+..... +.+.+.+- .+ .+++..|+.. .
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l-~~e~e~L~~q~l~Qtql~d~lq~eE~q 276 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQL-ASEKEELHKQLLQQTQLMDRLQHEESQ 276 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677778888889999999999999999999999999888887543322211 22222222 21 1222233221 1
Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016680 268 AEA---------IQLKEKLEAAEGAKKALEMEMKKLRV 296 (384)
Q Consensus 268 ~r~---------ar~~EqL~Aae~A~~~lEaElrRLRV 296 (384)
.++ -.+.|.|+++-.-|..|.+.|.-+..
T Consensus 277 ~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~ 314 (617)
T PF15070_consen 277 GKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMAL 314 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 111 13457788887778888888776543
No 83
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=70.07 E-value=59 Score=40.13 Aligned_cols=102 Identities=27% Similarity=0.359 Sum_probs=78.6
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhH--------HHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGE--------EVQA 265 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~e--------El~~ 265 (384)
..|++++......|.+|...+.....+|..|.-+|..|+.++..-..++...+.--..-..+.+.|-+ ++.+
T Consensus 1232 ~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~k 1311 (1822)
T KOG4674|consen 1232 KVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEK 1311 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 67889999999999999999999999999999999999999987777776555544444444444433 3444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016680 266 SKAEAIQLKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 266 s~~r~ar~~EqL~Aae~A~~~lEaElrRLR 295 (384)
-....-++.+.|...|....++.-++-++|
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888888887
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.27 E-value=82 Score=34.13 Aligned_cols=21 Identities=14% Similarity=0.261 Sum_probs=10.8
Q ss_pred HHHHHHHhhhhhcHHHHHHhH
Q 016680 285 KALEMEMKKLRVQTDQWKKAA 305 (384)
Q Consensus 285 ~~lEaElrRLRVQseQWRKAA 305 (384)
..|++++..++.+..+.++..
T Consensus 265 ~~Le~ei~~le~e~~e~~~~l 285 (650)
T TIGR03185 265 EQLERQLKEIEAARKANRAQL 285 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444
No 85
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.00 E-value=1.3e+02 Score=35.82 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=60.1
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHH--------HHhhhhhHHHHHhhHHH
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMT--------QSLNKLGEEVQASKAEA 270 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~--------~kl~~~~eEl~~s~~r~ 270 (384)
++-....++..++..+.+.+.++.....+-+.+..++...-.++..+++...++. .+|..+...+......+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a 349 (1353)
T TIGR02680 270 RLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAA 349 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544444333333333333222 23444445555444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
++..++++.++..-..+..++.++.-..++=++..+.+..-|..
T Consensus 350 ~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~ 393 (1353)
T TIGR02680 350 ADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLAR 393 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666555555566666666666666666665555555554
No 86
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=68.59 E-value=69 Score=26.77 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=64.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
|..||.........+...+..|=+++.++.+---.|..++..|-.+.-+|....+.+...+..|..-+.+|+.-..++.+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45788888889999999999999999999988888888888888888888888888777777777777777754444444
No 87
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=68.08 E-value=49 Score=35.62 Aligned_cols=53 Identities=30% Similarity=0.399 Sum_probs=36.4
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEE 262 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eE 262 (384)
.-+||.-||+ ++|.|-..+.+||..|+.||...+..|.+| -+++-+|.-.++.
T Consensus 390 laaEiSalr~---erEkEr~~l~~eNk~L~~QLrDTAEAVqAa----gEllvrl~eaeea 442 (488)
T PF06548_consen 390 LAAEISALRA---EREKERRFLKDENKGLQIQLRDTAEAVQAA----GELLVRLREAEEA 442 (488)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHhHHHHHHHH----HHHHHHHHhHHHH
Confidence 3456666665 599999999999999999998765544333 2555555444443
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.69 E-value=1.1e+02 Score=32.87 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHH--HhhhhhhhHHHHHHHH-----HHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q 016680 209 LLQNKLDEKEKQLEGMAQENKSLKKQLN--EASSNISTAQKEKEEM-----TQSLNKLGEEVQASKAEAIQLKEKLEAAE 281 (384)
Q Consensus 209 eLKA~LmDKEtELq~l~~ENe~LK~ql~--Ea~~~~~~A~~~e~e~-----~~kl~~~~eEl~~s~~r~ar~~EqL~Aae 281 (384)
+++++|.|.+++|+-....-..+..|+- .|.+.-.-|+-.+.|+ .-++.++.+|.=...+-+.+++.+..-++
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555555555544432 2222222233333332 22333444444333333444444444444
Q ss_pred HHHHHHHHHHhhhhhcH
Q 016680 282 GAKKALEMEMKKLRVQT 298 (384)
Q Consensus 282 ~A~~~lEaElrRLRVQs 298 (384)
.-+--+--|+|.|++|+
T Consensus 90 n~~~r~~~eir~~~~q~ 106 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQK 106 (459)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44434555666677765
No 89
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=67.27 E-value=69 Score=36.63 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=37.4
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhcHHHHH
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKAL-------EMEMKKLRVQTDQWK 302 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~l-------EaElrRLRVQseQWR 302 (384)
...++...+.-|+++.-.+.-.+.=+|++|+--|..| +||+.|||-=+---+
T Consensus 491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777778888998888765 688889986554333
No 90
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=66.93 E-value=1.3e+02 Score=29.23 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=21.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHHHccC
Q 016680 259 LGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAGG 315 (384)
Q Consensus 259 ~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAvLs~g 315 (384)
|..++.+....+.++.+.-..-+.-...|..++...| +.+.+|-+....|+++.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar---~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAR---EDEEEAKEELLEVMSAP 133 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 4444444444444444444333333333443333222 33455555555556654
No 91
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.88 E-value=53 Score=26.53 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=42.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGE 261 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~e 261 (384)
.+..-|+.++..|+.|.......-..-..+..-+..|+.++.+.-..+...+.+-.....++..+..
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999866665555555566666777777766655555555544454444444443
No 92
>PRK12704 phosphodiesterase; Provisional
Probab=66.86 E-value=1.1e+02 Score=33.00 Aligned_cols=119 Identities=33% Similarity=0.367 Sum_probs=59.2
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh--hHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS--TAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~--~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
|.+...++......|..++.+|+....+.+.|..+.......+. ++..+... =|.++++++..-.++-.|-.|
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~---l~~~~~~~~~~~~~~~~~~~~-- 179 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEI---LLEKVEEEARHEAAVLIKEIE-- 179 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--
Confidence 44555555555555666666666655555555444432222221 11222222 134455555554443333222
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHH----HHHccCc-cCCCccccccC
Q 016680 278 EAAEGAKKALEMEMKKLRVQTDQWKKAADAAA----SILAGGV-EMNGRIPERCG 327 (384)
Q Consensus 278 ~Aae~A~~~lEaElrRLRVQseQWRKAAEaAa----AvLs~g~-~~nGk~~eR~g 327 (384)
+.|+..-+.+.|++=+++=| |=|++-++ .++.--+ +|-|||..|-|
T Consensus 180 ---~~~~~~a~~~a~~i~~~a~q-r~a~~~~~e~~~~~v~lp~d~mkgriigreG 230 (520)
T PRK12704 180 ---EEAKEEADKKAKEILAQAIQ-RCAADHVAETTVSVVNLPNDEMKGRIIGREG 230 (520)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-hhcchhhhhhceeeeecCCchhhcceeCCCc
Confidence 23444445555666665555 44444444 3333333 58999998877
No 93
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.84 E-value=30 Score=35.20 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=53.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH--------HhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN--------EASSNISTAQKEKEEMTQSLNKLGEEVQASKA 268 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~--------Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~ 268 (384)
|..+.=.|--||++|-+-+..|+----|...||.||. |--+-| .|+-+-.||..++.||.+=.+.-..
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRV-EAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRV-EAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999999995 333444 4566666777777777777665443
No 94
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=66.54 E-value=56 Score=37.06 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016680 231 LKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRV 296 (384)
Q Consensus 231 LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRV 296 (384)
+|+.+..+..+++-.++--..+..+|.-+++....+..+...+.+.|.+.+.=++-|-+++-+||.
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~ 350 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRF 350 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444444555555566666666566667777777776666666666666654
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.42 E-value=54 Score=36.48 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=12.3
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHH
Q 016680 255 SLNKLGEEVQASKAEAIQLKEKLE 278 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~EqL~ 278 (384)
++..|+-+|.+...+...|...|.
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443
No 96
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.41 E-value=99 Score=33.49 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=25.9
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.++.+|+.++..++.++..+.+++...+....+++..+.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777766666666666666665554
No 97
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.15 E-value=51 Score=35.47 Aligned_cols=93 Identities=24% Similarity=0.195 Sum_probs=57.3
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----------hhhhhhhHHHHHHHHHHHhhhhhHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE----------ASSNISTAQKEKEEMTQSLNKLGEEVQA 265 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E----------a~~~~~~A~~~e~e~~~kl~~~~eEl~~ 265 (384)
|..|-....+.|.-||..-...+.++|..++..+.|..+|.+ +..-...-+.+-+| |.+||.+
T Consensus 309 leeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqE-------Lieelrk 381 (502)
T KOG0982|consen 309 LEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQE-------LIEELRK 381 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHH
Confidence 444555666777888888788888888888888888877742 22222222222233 5566666
Q ss_pred hhHHHHHHHHHHHHH------HHHHH-HHHHHHhhhhhc
Q 016680 266 SKAEAIQLKEKLEAA------EGAKK-ALEMEMKKLRVQ 297 (384)
Q Consensus 266 s~~r~ar~~EqL~Aa------e~A~~-~lEaElrRLRVQ 297 (384)
.-.++-+.. |..+ ..|+. +||.|++|||--
T Consensus 382 elehlr~~k--l~~a~p~rgrsSaRe~eleqevkrLrq~ 418 (502)
T KOG0982|consen 382 ELEHLRRRK--LVLANPVRGRSSAREIELEQEVKRLRQP 418 (502)
T ss_pred HHHHHHHHH--HHhhccccCchhHHHHHHHHHHHHhccc
Confidence 654433322 2222 44777 699999999853
No 98
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.14 E-value=61 Score=29.83 Aligned_cols=43 Identities=33% Similarity=0.335 Sum_probs=24.2
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..|..++......|..|...|-+|+.-++.+.+|...|..+++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555544
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.68 E-value=1.6e+02 Score=35.85 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=56.2
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHH-------------HHHHHHHHHhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQ-------------KEKEEMTQSLNKLG 260 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~-------------~~e~e~~~kl~~~~ 260 (384)
-.+.+|.........+.+.+|.+.+..|..+.+....|..++..--.+.+.|+ ..-......+..+.
T Consensus 282 R~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELe 361 (1486)
T PRK04863 282 RVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELE 361 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666666666666555555542211111111 11112222444445
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHh
Q 016680 261 EEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 261 eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKA 304 (384)
+.+++.......+.+++...+.-...++.++..|+.|...+..+
T Consensus 362 e~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqe 405 (1486)
T PRK04863 362 ERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQA 405 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555556666666666665544433
No 100
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.46 E-value=44 Score=35.40 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=36.7
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHH----HHHhHHHHHHHHHhhhhhhhHHHHHHHHH---HHhhhhhHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGM----AQENKSLKKQLNEASSNISTAQKEKEEMT---QSLNKLGEEVQAS 266 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l----~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~---~kl~~~~eEl~~s 266 (384)
..|..|.....++|..|.-.|.+...|++-+ ..+++.+..++.++...+....+.+.++. ..+.++.+++...
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~ 356 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQ 356 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666666666664444433322 22456666665554444433333333332 2555566666443
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.29 E-value=32 Score=35.06 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=36.9
Q ss_pred ccHHhhhhc-------hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 195 VSIHELTLT-------KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 195 el~~EL~~~-------~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
.|..||+.+ ..+|.-|-+.+.|.+..++.++.||+.|...|..+
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566666554 56799999999999999999999999999997654
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=64.59 E-value=1.5e+02 Score=29.24 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=44.6
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHH-------HHHHHHHhHHHHHHHH---------HhhhhhhhHHHHHHHHHHHhhhhh
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQ-------LEGMAQENKSLKKQLN---------EASSNISTAQKEKEEMTQSLNKLG 260 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtE-------Lq~l~~ENe~LK~ql~---------Ea~~~~~~A~~~e~e~~~kl~~~~ 260 (384)
.+|+...+..+..+.-.+.|.+++ |+.+.+..+.+...+. .-.+++..|+.....+--.|..+.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444 4444444444444332 113334444444444444555555
Q ss_pred HHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHhhhhh
Q 016680 261 EEVQASKAEAIQLKEKLEAA----EGAKKALEMEMKKLRV 296 (384)
Q Consensus 261 eEl~~s~~r~ar~~EqL~Aa----e~A~~~lEaElrRLRV 296 (384)
.+..+......-+.+++.+- -.++..+|.+++.++-
T Consensus 117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444433333333322 2344456666655554
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.29 E-value=91 Score=29.77 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=10.1
Q ss_pred ccHHhhhhchhHHHHHHhhhh
Q 016680 195 VSIHELTLTKDEINLLQNKLD 215 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~Lm 215 (384)
.++.||+..+.+++.+...+-
T Consensus 97 ~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555444444433
No 104
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.24 E-value=1.2e+02 Score=33.44 Aligned_cols=49 Identities=29% Similarity=0.298 Sum_probs=39.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
.++..+|..++..|.-+-.-|.-|=++|-...+||-.|.++|-.+-.++
T Consensus 201 ~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 201 GDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3567788888888888888888888899999999999888876554333
No 105
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.77 E-value=1.8e+02 Score=33.01 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHH
Q 016680 277 LEAAEGAKKALEMEMKKLRVQTDQWKKAADAAA 309 (384)
Q Consensus 277 L~Aae~A~~~lEaElrRLRVQseQWRKAAEaAa 309 (384)
|..+|+.=++|--|++||---++.|+---|.|+
T Consensus 116 Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 116 LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777766655554
No 106
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.68 E-value=64 Score=32.29 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=59.6
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAK 284 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~ 284 (384)
.+...||..+.+.--.|+-+..||+.|-.++.+--+++++.+..-..+...+++|++.+++---..-++..+++--+---
T Consensus 128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 34455666666655556667777777777776666666666666667777888899998887777777777765332221
Q ss_pred HHHHHHHhhhhhcHHHHHH
Q 016680 285 KALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 285 ~~lEaElrRLRVQseQWRK 303 (384)
+-.|.++ =++-|+-
T Consensus 208 El~e~~~-----i~dl~~e 221 (290)
T COG4026 208 ELPEEEL-----ISDLVKE 221 (290)
T ss_pred cchHHHH-----HHHHHHH
Confidence 2222222 3678883
No 107
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.09 E-value=1e+02 Score=36.36 Aligned_cols=107 Identities=25% Similarity=0.359 Sum_probs=72.3
Q ss_pred CCCc-cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhhhhHHHHHhh
Q 016680 190 PEPE-KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI-STAQKEKEEMTQSLNKLGEEVQASK 267 (384)
Q Consensus 190 ~e~E-~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~-~~A~~~e~e~~~kl~~~~eEl~~s~ 267 (384)
.+.| ..+...|.....+++.|+...-+.++.++.+..+-.-|..+|..+-... ......-.++..|+.+|..|..+..
T Consensus 335 ~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e 414 (1074)
T KOG0250|consen 335 QDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLE 414 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445 5667778888888888888888888888888888888888887553333 4555566677778888888888876
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHhhhhh
Q 016680 268 AEAIQLKEKLEAA-------EGAKKALEMEMKKLRV 296 (384)
Q Consensus 268 ~r~ar~~EqL~Aa-------e~A~~~lEaElrRLRV 296 (384)
--.++|.+.+.-. +......+.+++-||-
T Consensus 415 ~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k 450 (1074)
T KOG0250|consen 415 EQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRK 450 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6556665554433 3334444555554443
No 108
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.89 E-value=67 Score=34.61 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=25.5
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.-.+-|.-|=+++-+.+++|+.+..+|+.|+.+.+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777778888888888877777644
No 109
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.89 E-value=1e+02 Score=33.75 Aligned_cols=97 Identities=11% Similarity=0.125 Sum_probs=48.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh--------hhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA--------SSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea--------~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
+|+.+|.....++.+|..++-++=-.++.+..+.+.|+.+|... -.++..+++.+..+...+..++..+...
T Consensus 292 ~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~ 371 (754)
T TIGR01005 292 RLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQA 371 (754)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444444444444455555555555555422 2233455555555556666666666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 267 KAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 267 ~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
...+.++.+=-+.++.++.-.+.=|
T Consensus 372 ~~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 372 GEQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544445555555444433
No 110
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.74 E-value=56 Score=29.24 Aligned_cols=90 Identities=27% Similarity=0.432 Sum_probs=46.6
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEG 282 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~ 282 (384)
...++..|...+-+...+|+.+..++..|..++....+..... ++...+..+..|..+-.. +|...+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-----el~~~i~~l~~e~~~l~~-------kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE-----ELREEIEELEEEIEELEE-------KLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHHHHHHHH-------HHHHHHh
Confidence 3456666766677777777777777777777666555544321 334444445555444333 3332222
Q ss_pred HHH-HHHHHHhhhhhcHHHHHHh
Q 016680 283 AKK-ALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 283 A~~-~lEaElrRLRVQseQWRKA 304 (384)
... --..|+.++.-.-..|++.
T Consensus 138 ~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 138 GSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 1234555555555555543
No 111
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.36 E-value=1.7e+02 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAAS 310 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaA 310 (384)
.+|..++...+.--..|+.+..+---.+.+|+.-+..|-.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666555555666666666666666665554433
No 112
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.34 E-value=60 Score=37.43 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=51.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
+.|.-||..++..+..|-.+|.|-+-.+...-.+.+.+..++.-..++|..-++.-+|...+|.+|..|-.+-
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3455667777777777777777777777777777777777777667777777777777777777776665543
No 113
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.33 E-value=1e+02 Score=36.95 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=44.8
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.+-.+.+..+.+|..|...+..+..+|+.+.+++..+...++. .+.. +.+-..-.++.-+..++++-++..-++
T Consensus 620 ~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~----~ek~-~~e~~~e~~lk~~q~~~eq~~~E~~~~- 693 (1317)
T KOG0612|consen 620 EISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISD----SEKE-ALEIKLERKLKMLQNELEQENAEHHRL- 693 (1317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555666667777777777777777666644444333322 1111 233333334444444554444333333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016680 275 EKLEAAEGAKKALEMEM 291 (384)
Q Consensus 275 EqL~Aae~A~~~lEaEl 291 (384)
+|-+.++.-.+++..|
T Consensus 694 -~L~~~e~~~~e~~~~l 709 (1317)
T KOG0612|consen 694 -RLQDKEAQMKEIESKL 709 (1317)
T ss_pred -HHhhHHHHHHHHHHHh
Confidence 5555555555555444
No 114
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.06 E-value=37 Score=36.36 Aligned_cols=71 Identities=28% Similarity=0.323 Sum_probs=49.1
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 016680 210 LQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGA 283 (384)
Q Consensus 210 LKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A 283 (384)
|--=|--||+|||.+-+|...||.+|.-|...-.-|--+=.++-.+|++++--.+ .-..|+.|+|.+|-+|
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakad---cdIsrLKEqLkaAteA 580 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKAD---CDISRLKEQLKAATEA 580 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHH
Confidence 3334678999999999999999999986655544444555666666665543222 2347899999887554
No 115
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=59.39 E-value=1.8e+02 Score=28.38 Aligned_cols=93 Identities=25% Similarity=0.357 Sum_probs=59.6
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHH--------------HHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEK--------------QLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGE 261 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEt--------------ELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~e 261 (384)
|..+|.....-...+..+|.+.+. -.+-+-+..+.+-.|+.+|.+-.+.|..+-++...+|-.++.
T Consensus 16 leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~ 95 (205)
T KOG1003|consen 16 LEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEG 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666655432 122223334445566778888888888888999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016680 262 EVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 262 El~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLR 295 (384)
+|.... ++.++++.--..|+-+++-+.
T Consensus 96 dLE~~e-------eraE~~Es~~~eLeEe~~~~~ 122 (205)
T KOG1003|consen 96 ELERAE-------ERAEAAESQSEELEEDLRILD 122 (205)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHhH
Confidence 998544 444555555556666666553
No 116
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=59.07 E-value=1.5e+02 Score=29.84 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
.|..+|.....++.+|..++-++=-.++.+..+.+.|+.+|..
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555566666666667666643
No 117
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.98 E-value=1.4e+02 Score=26.96 Aligned_cols=90 Identities=26% Similarity=0.378 Sum_probs=72.4
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAE 281 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae 281 (384)
..+-+...|..++.++..||. .|+..+...++.+.-.+.+...+..++..+..++.........+.+.|..+.
T Consensus 46 qLkien~~l~~kIeERn~eL~-------~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELL-------KLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777778877776665 4566777777777788888888888889999999988888889999999998
Q ss_pred HHHHHHHHHHhhhhhcH
Q 016680 282 GAKKALEMEMKKLRVQT 298 (384)
Q Consensus 282 ~A~~~lEaElrRLRVQs 298 (384)
..+..+.....+|+-|.
T Consensus 119 ~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 119 KERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888888663
No 118
>PRK11281 hypothetical protein; Provisional
Probab=58.88 E-value=3.1e+02 Score=32.58 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=32.5
Q ss_pred ccchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 63 LGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 63 ~~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.-.++++++.+|.++|.+|..++-||+.+...=.+||..+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls 166 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY 166 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 55677788888888888888888888888887777777764
No 119
>PRK00106 hypothetical protein; Provisional
Probab=58.65 E-value=1.5e+02 Score=32.31 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=53.9
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh--hHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS--TAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~--~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
|.+...++......|..++.+|+....+.+.|..+.......+. ++..+... =+.++++++....++-.|-.|
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~---l~~~~~~~~~~~~~~~i~~~e-- 194 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREI---ILAETENKLTHEIATRIREAE-- 194 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--
Confidence 44444444444444444444544444444444333322111111 11111112 234566666655444333322
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHH----HHHccCc-cCCCccccccC
Q 016680 278 EAAEGAKKALEMEMKKLRVQTDQWKKAADAAA----SILAGGV-EMNGRIPERCG 327 (384)
Q Consensus 278 ~Aae~A~~~lEaElrRLRVQseQWRKAAEaAa----AvLs~g~-~~nGk~~eR~g 327 (384)
+.|++.-+.+-+++=+++=| |=|++-++ .++.-.+ +|-|||..|-|
T Consensus 195 ---~~a~~~a~~~a~~ii~~aiq-r~a~~~~~e~tvs~v~lp~demkGriIGreG 245 (535)
T PRK00106 195 ---REVKDRSDKMAKDLLAQAMQ-RLAGEYVTEQTITTVHLPDDNMKGRIIGREG 245 (535)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-HhcchhhhhheeeeEEcCChHhhcceeCCCc
Confidence 23344444445555555544 44444444 3444343 58899998876
No 120
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.42 E-value=1.6e+02 Score=31.73 Aligned_cols=119 Identities=30% Similarity=0.352 Sum_probs=56.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh--hHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS--TAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~--~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
|.....++...+..|..++.+|..+..+-..+..+.......+. +...+... =|.+++++++.-.+.-.|-.|
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~---l~~~~~~~~~~~~~~~~~~~~-- 173 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEI---LLEEVEEEARHEAAKLIKEIE-- 173 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--
Confidence 44455555555555555555555555555554443322222111 11122222 134455665554443333222
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHH----HHHccCc-cCCCccccccC
Q 016680 278 EAAEGAKKALEMEMKKLRVQTDQWKKAADAAA----SILAGGV-EMNGRIPERCG 327 (384)
Q Consensus 278 ~Aae~A~~~lEaElrRLRVQseQWRKAAEaAa----AvLs~g~-~~nGk~~eR~g 327 (384)
+.|+..-+..-+++=+++=| |=|++-++ .++.-.+ +|-|||..|-|
T Consensus 174 ---~~~~~~a~~~a~~i~~~aiq-r~a~~~~~e~~~~~v~lp~d~~kgriigreG 224 (514)
T TIGR03319 174 ---EEAKEEADKKAKEILATAIQ-RYAGDHVAETTVSVVNLPNDEMKGRIIGREG 224 (514)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-hccchhhhhheeeeEEcCChhhhccccCCCc
Confidence 22333444444555555544 34444443 4444333 58899998877
No 121
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.25 E-value=15 Score=39.32 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=34.3
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
+|+.+|+..+.|..+|.+.+-+.|..|..+..||..|+.|+
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888888888888888888886
No 122
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.14 E-value=1.4e+02 Score=35.30 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=73.3
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
-..|+...+....-+|..|-+++.+.+-+..-.+.|.++..+..+.++....--.++..++..+-+.++.-..+...+.-
T Consensus 246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888899999999999999999999999999888777777666665556666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 276 KLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
+|+....+.+-....+- +-+|--..|=+-|..
T Consensus 326 ~le~lk~~~~~rq~~i~-------~~~k~i~~~q~el~~ 357 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIE-------KAKKMILDAQAELQE 357 (1072)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhh
Confidence 55544444333333332 233444444455554
No 123
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.94 E-value=1.7e+02 Score=27.75 Aligned_cols=37 Identities=27% Similarity=0.514 Sum_probs=20.5
Q ss_pred hhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 66 RIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKL 102 (384)
Q Consensus 66 r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el 102 (384)
++..|+.+|..+++.+..+...|-.++....+|-.++
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~ 38 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEV 38 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555565556666666555555555555554444
No 124
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=57.75 E-value=1.4e+02 Score=35.39 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 274 KEKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 274 ~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
..++.--+...+.||-.+.+||+-.++-+.++.
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555566667777777777766653
No 125
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.50 E-value=35 Score=29.21 Aligned_cols=52 Identities=8% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhh
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLG 260 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~ 260 (384)
.+..|+.++.+.+.+++.+.++|+.|+.+|..--.. -..-++-|..+||.+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~---~dyiEe~AR~~Lg~vk 79 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG---QEAIEERARNELGMVK 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHHHcCCCC
Confidence 567788888888888999999999999988644321 1345555666677654
No 126
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.26 E-value=1e+02 Score=34.03 Aligned_cols=51 Identities=29% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCCCCCCccccHHhhhhchhHHH---------------------HHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 186 PPAEPEPEKVSIHELTLTKDEIN---------------------LLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 186 ~~a~~e~E~el~~EL~~~~~eI~---------------------eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
...++.++..|+..-+...+||+ .|+..+..||.|++.|..+|..|+++|.
T Consensus 254 ~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 254 REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556556665555555554 4555566777777777777777777775
No 127
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.10 E-value=18 Score=28.96 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=28.8
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..||+.||.+..+.+.....+..||..||..+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999999999874
No 128
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.89 E-value=38 Score=25.94 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=35.3
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKL 259 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~ 259 (384)
..+..++..+-+.+++++.+.++|+.|+.++..... .-..-++-|..++|.+
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~---~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN---DPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHcCCc
Confidence 456677888888888899999999999988876512 1223344444456554
No 129
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.35 E-value=1.6e+02 Score=26.86 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=52.4
Q ss_pred HHhhhhchhHHHHHHhhhhhh-HHHHHHHHHHhHHHHHHHHHhhh----hhhhHHHH-HHHHHHHhhhhhHHHHHhhHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEK-EKQLEGMAQENKSLKKQLNEASS----NISTAQKE-KEEMTQSLNKLGEEVQASKAEA 270 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDK-EtELq~l~~ENe~LK~ql~Ea~~----~~~~A~~~-e~e~~~kl~~~~eEl~~s~~r~ 270 (384)
+..--..+.++.+||..|--. ++++..+..+++.|+.+++..-. +|...++- .-++-..-+.+.++......+.
T Consensus 50 e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki 129 (177)
T PF07798_consen 50 ENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKI 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333445556666666666433 34555555666666555542221 11111110 0011112234555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWR 302 (384)
..+.-+++-- -+ .|.+++-.+|.++=||-
T Consensus 130 ~e~~~ki~~e-i~--~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 130 QELNNKIDTE-IA--NLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH
Confidence 5555555322 22 48888889999999995
No 130
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.12 E-value=2.5e+02 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=28.5
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
+-+-+++.....+|.+++..+-+++.-+....++..+|.+.++++
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~ 781 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA 781 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 344555666666666666666666666666666666666665544
No 131
>PF15294 Leu_zip: Leucine zipper
Probab=55.55 E-value=1.2e+02 Score=30.68 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=41.8
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
-|..|......|-..||.+|..-|..--.+.+|+..|+.+|++.-.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999999999999999999999999999999999986544
No 132
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=55.54 E-value=1.3e+02 Score=29.07 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=64.7
Q ss_pred ccccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHH
Q 016680 193 EKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQ 272 (384)
Q Consensus 193 E~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar 272 (384)
+.+.-+||...+.+|.-|-+++-.+-.+...+..|...|.+.|. + .+|+-+...|.+|......|-..
T Consensus 74 ~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~-------eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 74 DMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----T-------EEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred cCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----h-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556889999999999999998888888888888888876642 1 14444555566666555544332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHHH
Q 016680 273 LKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASIL 312 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAvL 312 (384)
+.+-. -....+.+++=-+-----+-+|||-=.-.-.++
T Consensus 142 ~k~g~--~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~ 179 (201)
T KOG4603|consen 142 IKAGT--NHVTPEDKEQVYREYQKYCKEWRKRKRMFREII 179 (201)
T ss_pred HHHhc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 022223343322222234789999776555554
No 133
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.42 E-value=1.4e+02 Score=34.25 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=67.4
Q ss_pred chhHHHHHHhhhhhhHHHH----HHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQL----EGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLE 278 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtEL----q~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~ 278 (384)
.++|-..|..-+.|||.+| |.+..|+..+|.++++|...+..-+-+-+.+-.+...|+-.|+..-+.+.||.|=-+
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR 546 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTR 546 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3355555667778888887 567778888899999999999999888888889999999999999888899988766
Q ss_pred HHHHHHHHH
Q 016680 279 AAEGAKKAL 287 (384)
Q Consensus 279 Aae~A~~~l 287 (384)
.-|-...-|
T Consensus 547 ~LQ~Sma~l 555 (861)
T PF15254_consen 547 TLQNSMAKL 555 (861)
T ss_pred HHHHHHHHH
Confidence 655544433
No 134
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=55.06 E-value=40 Score=26.78 Aligned_cols=42 Identities=36% Similarity=0.389 Sum_probs=26.1
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
+..||.+.++....+.-+|-|-|...+.+..+.+.|+.++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666554
No 135
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=54.71 E-value=63 Score=29.41 Aligned_cols=44 Identities=30% Similarity=0.490 Sum_probs=34.9
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHH---HhHHHHHHHHHhhh
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQ---ENKSLKKQLNEASS 240 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~---ENe~LK~ql~Ea~~ 240 (384)
...+...+.++..|+..|-+.+.+|..|.. .|+.|+.+|.+.-.
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQA 65 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 455666788888999999999988888888 88888888776544
No 136
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=54.57 E-value=28 Score=32.56 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=29.5
Q ss_pred CCCc-cccHHhhhhchhHHHHHHhhhhhhHHHHHHH
Q 016680 190 PEPE-KVSIHELTLTKDEINLLQNKLDEKEKQLEGM 224 (384)
Q Consensus 190 ~e~E-~el~~EL~~~~~eI~eLKA~LmDKEtELq~l 224 (384)
.+.| .+|+.||.+.+.||.-|+-=|..||....-|
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eL 62 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAEL 62 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445 6899999999999999999999999877643
No 137
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=54.04 E-value=1.6e+02 Score=26.25 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=18.1
Q ss_pred hchhHHHHHHhhhhhhHHHH-----HHHHHHhHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQL-----EGMAQENKSLKKQ 234 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtEL-----q~l~~ENe~LK~q 234 (384)
..-.....+.+++++.++.+ ..+...|..|+.+
T Consensus 5 ~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e 42 (136)
T PF04871_consen 5 SELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAE 42 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777766655 3444444444444
No 138
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.29 E-value=2.7e+02 Score=28.50 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=45.4
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAA 280 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aa 280 (384)
.-..++|..||..+-+-=.+++-++++-....++|.+...++..-+....+ +-+++-+...++-.+.+.+...
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade-------~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADE-------LHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHH
Confidence 333455555555555555555555555555555555555544444444444 3444444444444444444443
Q ss_pred -------HHHHHHHHHHHhhhhhcHHH
Q 016680 281 -------EGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 281 -------e~A~~~lEaElrRLRVQseQ 300 (384)
+..=.+|.+.++..+.....
T Consensus 234 ~~elre~~k~ik~l~~~~~~~~~~~~~ 260 (294)
T COG1340 234 QNELRELEKKIKALRAKEKAAKRREKR 260 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555544443
No 139
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=53.01 E-value=17 Score=30.60 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcHHHHH
Q 016680 287 LEMEMKKLRVQTDQWK 302 (384)
Q Consensus 287 lEaElrRLRVQseQWR 302 (384)
|..++.+|+.|..+.|
T Consensus 112 l~~~~~~lk~~~~~~~ 127 (131)
T PF05103_consen 112 LREEIEELKRQAEQFR 127 (131)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445556666555544
No 140
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.88 E-value=2.9e+02 Score=31.85 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=50.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-HhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN-EASSNISTAQKEKEEMTQSLNKLGEEVQA 265 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~-Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~ 265 (384)
-+.+||+..+.+...+++.+.++|..+.++..-|..++..+. +-..+-..|+..+......++.|.+-|..
T Consensus 527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~ 598 (961)
T KOG4673|consen 527 KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK 598 (961)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999999998763 22233334555555555555555555443
No 141
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.55 E-value=1.3e+02 Score=31.30 Aligned_cols=28 Identities=39% Similarity=0.387 Sum_probs=17.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
|++|..+=++.-..+.+-.+||..|-+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~ 29 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKM 29 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566677777777777443
No 142
>PF13514 AAA_27: AAA domain
Probab=51.93 E-value=3.1e+02 Score=31.87 Aligned_cols=38 Identities=39% Similarity=0.473 Sum_probs=25.0
Q ss_pred hhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 66 RIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 66 r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
+......++.++++++..+..++...+.....++.++.
T Consensus 667 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1111)
T PF13514_consen 667 EWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALE 704 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566677777777777777777777777775
No 143
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.73 E-value=2.2e+02 Score=32.79 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHH
Q 016680 267 KAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 267 ~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWR 302 (384)
-.-.+.++.+|++++.+++-|-...-+||-|-+|-|
T Consensus 222 ~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 222 EQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334467889999999999999999999999999999
No 144
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.57 E-value=1.5e+02 Score=24.96 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=49.3
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.+...|..++.+|..+...+..++.+|..-......-....+....+.. .+-..+..+...-...-........++.
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~---~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE---AKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888887777776655554443333333322221 1111221122212222222233334555
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 016680 275 EKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLR 295 (384)
.+|...+.-...|+..+..+.
T Consensus 88 ~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 88 AELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566555555555555555443
No 145
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.35 E-value=1.2e+02 Score=28.36 Aligned_cols=99 Identities=26% Similarity=0.351 Sum_probs=48.1
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAA 280 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aa 280 (384)
......+..|+..+.+.+.++..+.+..+.++..-.+ +.+|.. +.+++.+-......+..+|...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~---------~~eR~~------~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE---------SEEREE------LLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444444332211 122222 2333333333344555555533
Q ss_pred HHH----HHHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 281 EGA----KKALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 281 e~A----~~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
... =..|..++..++.-.+.|----..--..|.-
T Consensus 130 ~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 130 SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 222 2346666777777777776665555555554
No 146
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.92 E-value=1.7e+02 Score=25.62 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 268 AEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 268 ~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
.+...+..++...+.+....-.|+.||+....|
T Consensus 94 ~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 94 EKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 147
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.91 E-value=3.1e+02 Score=33.59 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=10.5
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGM 224 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l 224 (384)
|...++.+.+|..+|-..+.+++..
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.55 E-value=2.6e+02 Score=31.77 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHH
Q 016680 217 KEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKK-------ALEM 289 (384)
Q Consensus 217 KEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~-------~lEa 289 (384)
.|..+..++..--.|..++.--...++.-+....++...+.++..+++++.+.-.++-+++.+....-+ -+|.
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleE 608 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEE 608 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455566777888899999999999999999988888888877655432 2466
Q ss_pred HHhhhhh
Q 016680 290 EMKKLRV 296 (384)
Q Consensus 290 ElrRLRV 296 (384)
|+.+|+-
T Consensus 609 E~e~L~~ 615 (698)
T KOG0978|consen 609 ELERLKR 615 (698)
T ss_pred HHHHHHH
Confidence 6666653
No 149
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=50.40 E-value=2e+02 Score=26.17 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHh
Q 016680 225 AQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 225 ~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKA 304 (384)
.-+|..|...+..+...+.+.++.-......|..+...++.++..-++|..++..+.+.=..-|..++||.-.-+.-|.=
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 34455555555555444443333333333334444555555555557777777777777677777788888877776665
Q ss_pred HHH
Q 016680 305 ADA 307 (384)
Q Consensus 305 AEa 307 (384)
|++
T Consensus 98 a~t 100 (135)
T TIGR03495 98 ADT 100 (135)
T ss_pred hcC
Confidence 544
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=50.28 E-value=3e+02 Score=28.24 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
+...+|..++..|..|-.-|--|-.+.....+|...|..+|
T Consensus 203 dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 203 DCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788887777776666666666666666666554
No 151
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=49.27 E-value=2.4e+02 Score=26.76 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTD 299 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQse 299 (384)
-+--.-+.|...||+|+.+||-+..
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567888899999988887654
No 152
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.12 E-value=2.2e+02 Score=26.31 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=51.2
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh--hhHHH---HHHHHHHHhhhhhHHHHHhhHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI--STAQK---EKEEMTQSLNKLGEEVQASKAEA 270 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~--~~A~~---~e~e~~~kl~~~~eEl~~s~~r~ 270 (384)
++..|...+..|....+.-.-.+.++..+..+...+..++..|...- ..|+. ...+....+..+...++.....+
T Consensus 35 ~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~ 114 (221)
T PF04012_consen 35 MEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQV 114 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666666665553321 12221 12222334455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKL 294 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRL 294 (384)
..+..+|...+.=-.+|..+..-|
T Consensus 115 ~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 115 EKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555555554444444444333
No 153
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.12 E-value=2.1e+02 Score=32.07 Aligned_cols=109 Identities=16% Similarity=0.214 Sum_probs=53.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
+|+.||+.+..++...++.+.-.+...+-+.+-|..+..+--..-.+|..-+-.|.-++...+.|+||-=--.+- -
T Consensus 111 eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq----V 186 (772)
T KOG0999|consen 111 ELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ----V 186 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH----H
Confidence 455666666666666666555555555555555555544444444445544444445555555554442211111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTDQWKKAADA 307 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEa 307 (384)
--|+.+|.-=+.|--|++||---++-.--++|.
T Consensus 187 s~LR~sQVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 187 SNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 124455555555555555554444444333333
No 154
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=48.97 E-value=2.3e+02 Score=32.41 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=22.5
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
......++..|+..-.+.|..|....+..+.++++|.|+
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~ 629 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKES 629 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555556666666666666666666544
No 155
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=48.85 E-value=2.5e+02 Score=28.97 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=21.5
Q ss_pred hhHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016680 67 IADLESQLGQAQEELKNLKDQLASAEAAKK 96 (384)
Q Consensus 67 ~seLesql~qaqedLKk~keQLa~aE~~Kk 96 (384)
-.++++++.+++.+|..++.+++..++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 92 NGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888887777777766543
No 156
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.67 E-value=41 Score=29.16 Aligned_cols=23 Identities=48% Similarity=0.601 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|...|..|..+.++...||.++.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 157
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=47.97 E-value=67 Score=31.33 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=38.0
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS 239 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~ 239 (384)
+++|....+.+..-|+..|..+.++|.....++..|++|.++-.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77888888999999999999999999999999999999976543
No 158
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.63 E-value=2.1e+02 Score=31.71 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=16.7
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHH
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKS 230 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~ 230 (384)
.-..+.++.|-|=...++..+..++.
T Consensus 262 eslre~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 262 ESLREKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34456667777777777776666544
No 159
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=47.60 E-value=2.6e+02 Score=31.81 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=37.8
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQA 265 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~ 265 (384)
++.+-...++||-++|-+=.-.=.+.--|.+||=.|+++ ++.+...+..=+.+...+..++||.+-
T Consensus 74 ~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq----vs~Lk~sQvefE~~Khei~rl~Ee~~~ 139 (717)
T PF09730_consen 74 LELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ----VSVLKQSQVEFEGLKHEIKRLEEEIEL 139 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777765555555556667777777777 344444444444544455555555443
No 160
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=47.57 E-value=1.6e+02 Score=24.29 Aligned_cols=70 Identities=30% Similarity=0.391 Sum_probs=40.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.+.+.+.+...+..+-+.|+.+-+..+..|..++..- ++.++-.+.+..+.+++.+.+..-.+++.+|.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-----------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-----------EDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777777777776666665444321 22333333445566666666666666666664
Q ss_pred h
Q 016680 293 K 293 (384)
Q Consensus 293 R 293 (384)
.
T Consensus 99 ~ 99 (108)
T PF02403_consen 99 E 99 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 161
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.44 E-value=2e+02 Score=26.69 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhh
Q 016680 281 EGAKKALEMEMKKLR 295 (384)
Q Consensus 281 e~A~~~lEaElrRLR 295 (384)
.+.+..+|++|+.+=
T Consensus 94 ~~~~~~~ea~L~~~~ 108 (155)
T PRK06569 94 LIKKKNLEQDLKNSI 108 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445666665543
No 162
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.19 E-value=32 Score=31.34 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=29.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
...+.++.+.||..||..|..++.++..+....+.|..+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888899999998888888877776666666543
No 163
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=47.12 E-value=28 Score=27.80 Aligned_cols=30 Identities=27% Similarity=0.142 Sum_probs=24.3
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHh
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQEN 228 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~EN 228 (384)
||..-=-|-++||++||+.+-||+..--++
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~ 33 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSEL 33 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666788999999999999999876543
No 164
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=44.36 E-value=2.8e+02 Score=26.12 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
+++..|...+..+..+.+.-.-.+.++..+......+..++.-|...-.. ...++++. +...+...+.++.
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~E--dLAr~Al~-------~k~~~~~~~~~l~ 105 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGRE--DLARAALI-------EKQKAQELAEALE 105 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHH-------HHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666665544332110 11112111 2233344455666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHHHHHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQseQWRK 303 (384)
.++......=..|..-++.|+-+-+.|+-
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666643
No 165
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=44.21 E-value=7.5 Score=42.42 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHH
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAAS 310 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaA 310 (384)
++..++-.+.+|+.+. .++++..+.--+.++.|+.+||-+.+.|...|+.|-+
T Consensus 243 ~l~~ql~~L~~el~~~-------e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~ 295 (713)
T PF05622_consen 243 DLRAQLRRLREELERL-------EEQRDDLKIELEELEKEIDELRQENEELQAEAREARA 295 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555432 2223333333345666666666666666666665544
No 166
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.14 E-value=55 Score=33.30 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHH
Q 016680 208 NLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEM 252 (384)
Q Consensus 208 ~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~ 252 (384)
..=|+...+.+.|++.++..|+.||.++.+.-.||---|.+-.++
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888999999999999999999887766665444444443
No 167
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=43.94 E-value=7.6 Score=43.68 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
......+|..|+..|.+..-.+..+.-+|..|..+|.+.
T Consensus 407 ~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl 445 (859)
T PF01576_consen 407 ARELETELFKLKNELEELQEQLEELERENKQLQDELEDL 445 (859)
T ss_dssp ---------------------------------------
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333444444444444444444444444444444444433
No 168
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.54 E-value=4.3e+02 Score=29.83 Aligned_cols=54 Identities=17% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHH
Q 016680 210 LQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEV 263 (384)
Q Consensus 210 LKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl 263 (384)
|+....+-=.+|+.+.++-+.|....+..+..++.|...-+.+..++..+..-+
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333444444444444444444444444555555445444555444444
No 169
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=43.21 E-value=75 Score=30.74 Aligned_cols=68 Identities=12% Similarity=0.228 Sum_probs=49.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016680 219 KQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKA 286 (384)
Q Consensus 219 tELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~ 286 (384)
--||+|.+.+.--+..|...--.-+-+-.+.+.....++.|+.+|+..+.+-+++.++.+...+-+++
T Consensus 46 dvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~ 113 (203)
T KOG3433|consen 46 DVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREE 113 (203)
T ss_pred HHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhh
Confidence 35899999999888888754222222224445566677789999999999999999888888766653
No 170
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=42.89 E-value=3.5e+02 Score=34.02 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=32.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 016680 70 LESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEKKTK 107 (384)
Q Consensus 70 Lesql~qaqedLKk~keQLa~aE~~Kk~A~~el~KK~~ 107 (384)
++.++.-++-|.+.++.|.++....-.++++-|--..+
T Consensus 1165 ~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~ 1202 (1822)
T KOG4674|consen 1165 AETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERA 1202 (1822)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999974333
No 171
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.67 E-value=1.5e+02 Score=24.95 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRK 303 (384)
..+.+....+...+++|+.|-..||-+-..|.-
T Consensus 35 ~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqe 67 (79)
T PRK15422 35 NSLSQEVQNAQHQREELERENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555556667788899999999999999963
No 172
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.58 E-value=2.4e+02 Score=24.97 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=13.9
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
|...+..+.+|...=.+.++-++.|..+|..+...
T Consensus 25 lE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr 59 (107)
T PF09304_consen 25 LEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444333333344444444444443333
No 173
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.49 E-value=2.4e+02 Score=33.63 Aligned_cols=101 Identities=27% Similarity=0.374 Sum_probs=59.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHh-HHHHHHHH---------Hhhhh----h------hhHHHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQEN-KSLKKQLN---------EASSN----I------STAQKEKEEMTQ 254 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~EN-e~LK~ql~---------Ea~~~----~------~~A~~~e~e~~~ 254 (384)
.+..+|...+.+|.-|+.++.+++.+++..-.+- .++++.+. +-+.+ | ..-+..-.....
T Consensus 231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k 310 (1141)
T KOG0018|consen 231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEK 310 (1141)
T ss_pred hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhh
Confidence 4567788888889999999988888888777444 33333321 00000 0 001122222223
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016680 255 SLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLR 295 (384)
.+--.+.+++....-..++.-++.+.+.+++++|.|+.+-+
T Consensus 311 ~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~ 351 (1141)
T KOG0018|consen 311 DIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERS 351 (1141)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444457778888889999999988885543
No 174
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.96 E-value=5e+02 Score=29.80 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 222 EGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 222 q~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
..+..+-+.|...+..+...++..+..-+++-.+|..+.-+|.
T Consensus 599 E~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 599 EKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444444444444444
No 175
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=41.69 E-value=2e+02 Score=23.72 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 016680 218 EKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 218 EtELq~l~~ENe~LK~ql~ 236 (384)
-++++.+..+-..+.++|.
T Consensus 42 ~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444443
No 176
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=41.35 E-value=2.5e+02 Score=24.70 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=19.0
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
.....|......+.+-...|..+....+.+...+.+...
T Consensus 118 ~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~ 156 (213)
T PF00015_consen 118 ESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHh
Confidence 333344444444444445555555555555555544433
No 177
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.29 E-value=4e+02 Score=27.31 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=26.5
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+++++.|+.++-|.+++.|.+.-|-+.+|....
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888877664
No 178
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.87 E-value=3.3e+02 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 230 SLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 230 ~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
.+..+++++...+...++..+.+...+.++.+||+--
T Consensus 491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333344444444444555555555443
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=40.47 E-value=2.5e+02 Score=24.47 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=8.4
Q ss_pred cHHhhhhchhHHHHHHhhhh
Q 016680 196 SIHELTLTKDEINLLQNKLD 215 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~Lm 215 (384)
|..++......+......+-
T Consensus 8 l~~e~~~~~~~~~~~~~~~~ 27 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQ 27 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 180
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.45 E-value=3.6e+02 Score=28.55 Aligned_cols=38 Identities=18% Similarity=0.387 Sum_probs=28.9
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS 239 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~ 239 (384)
..+.-+-.+.+++.+...|-+.+.-.|+.|+++|--+.
T Consensus 82 e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 82 EKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVR 119 (401)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666778888888888888888999999886543
No 181
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=40.32 E-value=43 Score=36.92 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=36.8
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSN 241 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~ 241 (384)
-++++..+.-|+++|-..+.|-+.|-.||..||.+|.+.++|
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 457788889999999999999999999999999999877663
No 182
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.28 E-value=91 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=29.0
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS 239 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~ 239 (384)
..-|.+.||++-...-.+-.++..||+.|+.++..-.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888899999999988876543
No 183
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=39.71 E-value=1.1e+02 Score=24.22 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=26.1
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKL 102 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el 102 (384)
+=|+.|.+++.|++.|..-++-.+..+-.+-.+|-..|
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888877766655555554444
No 184
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.51 E-value=2.4e+02 Score=34.11 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=36.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
+||.-||+ ++|+|.+.+.+||..|+-||-..+..|.+| =|++-+|...+|.+-
T Consensus 1162 ae~s~l~~---ereker~~~~~enk~l~~qlrdtaeav~aa----gellvrl~eaeea~~ 1214 (1320)
T PLN03188 1162 AEISALKV---EREKERRYLRDENKSLQAQLRDTAEAVQAA----GELLVRLKEAEEALT 1214 (1320)
T ss_pred HHHHHHHH---HHHHHHHHHHHhhHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45555554 799999999999999999998655544332 255555555554443
No 185
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.56 E-value=3.7e+02 Score=25.86 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=21.1
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+..+|...+..+..+.+++...+..+..+..+-..++.++.
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 118 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLE 118 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666665555555554444444444444443
No 186
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=38.25 E-value=45 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=17.2
Q ss_pred hhhHhhHHHhHHHHHHHHHHHHHHH
Q 016680 66 RIADLESQLGQAQEELKNLKDQLAS 90 (384)
Q Consensus 66 r~seLesql~qaqedLKk~keQLa~ 90 (384)
|++.||.+|.+++.++++++.++..
T Consensus 33 RLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 33 RLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766666544
No 187
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=37.99 E-value=13 Score=31.33 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=10.8
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..++.....++..|+..+.+...+|..+...+..|+..|
T Consensus 31 ~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 31 AEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 333444444444444444444444444444444444433
No 188
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.87 E-value=1.1e+02 Score=25.32 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=28.0
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.||.+||.++.--..-|..++++|+.-...=.+-|..|.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999876666677888888766655555555553
No 189
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.65 E-value=80 Score=27.69 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=12.8
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
.+|+..|..|..+..+-..||.++.+.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555444443
No 190
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.62 E-value=66 Score=27.86 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
+|...|......|..|=+.|...-..+..+.+||..|+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIE 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666666666655
No 191
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.52 E-value=4.6e+02 Score=31.75 Aligned_cols=63 Identities=27% Similarity=0.339 Sum_probs=29.9
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhcHHHHHHhHHHHHHHHc
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKA-------LEMEMKKLRVQTDQWKKAADAAASILA 313 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~-------lEaElrRLRVQseQWRKAAEaAaAvLs 313 (384)
++..+|-.+.+.+++-....-.+.+.|..-..-... |--|++-|+-|.---|-=++.|-+.++
T Consensus 525 ~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 525 ELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555443222222 333444444555555555555555444
No 192
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.44 E-value=1.4e+02 Score=29.89 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=62.1
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.++..|.....++....+.|..+..+|+.+.+.-..|+.+..++..+.. .+..+++ ...
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~--------------~l~~~~~-------~~~ 276 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQ--------------ELEEEIE-------ETE 276 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH-------HHH
Confidence 5677888888888888888888888888888888888888776543221 1223322 344
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
.+|..|+.--..|..|-.|=..+.++-.....
T Consensus 277 ~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 277 RKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp HHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred hhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 45666766667777777766666666554443
No 193
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.09 E-value=3.9e+02 Score=25.70 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=3.5
Q ss_pred CCccccc
Q 016680 319 NGRIPER 325 (384)
Q Consensus 319 nGk~~eR 325 (384)
+|.|.++
T Consensus 212 ~G~V~~~ 218 (334)
T TIGR00998 212 DGYVARR 218 (334)
T ss_pred CcEEEEE
Confidence 5555443
No 194
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=36.75 E-value=3.8e+02 Score=25.53 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=23.4
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
..-.+|..|+.++..+..+|+--.+ ++.+...++||
T Consensus 19 ~l~~~Ir~lq~~~e~k~~~l~e~l~-~~e~~r~v~ea 54 (175)
T COG4741 19 LLRAYIRSLQGKVESKARELEETLQ-KAERERLVNEA 54 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4556788899998888877764333 22445555555
No 195
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.29 E-value=5.2e+02 Score=27.87 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=27.6
Q ss_pred cchhhHhhHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 016680 64 GTRIADLESQLGQAQEELKNLKDQLA---SAEAAKKEAQEKLE 103 (384)
Q Consensus 64 ~~r~seLesql~qaqedLKk~keQLa---~aE~~Kk~A~~el~ 103 (384)
-.-+.+++++|..+.++++.+.+.|. .+|..-+.+..+|+
T Consensus 104 ~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~ 146 (569)
T PRK04778 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLK 146 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888877777777776544 45666667777776
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.15 E-value=8.3e+02 Score=29.24 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=63.0
Q ss_pred hhhchhHHHHHHhhhhh----------------hHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHH-------HHHHHh
Q 016680 200 LTLTKDEINLLQNKLDE----------------KEKQLEGMAQENKSLKKQLNEASSNISTAQKEKE-------EMTQSL 256 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmD----------------KEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~-------e~~~kl 256 (384)
|+..-.||+-||..|+. .|.|++......+.|..+|...-..+..-...-- ++.-++
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44445666667766653 4556666666666666666544333332222111 333355
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGA-------KKALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A-------~~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
..++..|+....--..+.+.+.-+++. -..++.=--.|.-|.-..|...+.+.-.|++
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554445555555554444 4433332233344477888888888888887
No 197
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=36.07 E-value=85 Score=30.63 Aligned_cols=38 Identities=42% Similarity=0.542 Sum_probs=30.3
Q ss_pred hhHhhHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 016680 67 IADLESQLGQAQEELKN-------LKDQLASAEAAKKEAQEKLEK 104 (384)
Q Consensus 67 ~seLesql~qaqedLKk-------~keQLa~aE~~Kk~A~~el~K 104 (384)
..|||+-.-.|+|+|++ +.+-|..+-+++.+|++.+.+
T Consensus 14 TlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~ 58 (214)
T PF07795_consen 14 TLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQK 58 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899888888888887 555567788899999999873
No 198
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=35.74 E-value=1.3e+02 Score=26.44 Aligned_cols=47 Identities=34% Similarity=0.451 Sum_probs=31.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
-.+.|+..|-.||..|.-+.+||+.|.=.-. .+..++..|.+|++.+
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~--------------QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQ--------------QLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 3457888888888888888888888743211 3444455566676644
No 199
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.44 E-value=3.8e+02 Score=25.09 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=7.7
Q ss_pred hhhhcHHHHHHhHH
Q 016680 293 KLRVQTDQWKKAAD 306 (384)
Q Consensus 293 RLRVQseQWRKAAE 306 (384)
+|+-++..|+.||.
T Consensus 139 ~~~~~~~~~~~~an 152 (188)
T PF03962_consen 139 KLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555655554
No 200
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.26 E-value=1.3e+02 Score=28.27 Aligned_cols=44 Identities=36% Similarity=0.422 Sum_probs=34.1
Q ss_pred HhhhhhHHHHHhhHH--H-HHHHHHHHHHHHHHHHHHHHHhhhhhcH
Q 016680 255 SLNKLGEEVQASKAE--A-IQLKEKLEAAEGAKKALEMEMKKLRVQT 298 (384)
Q Consensus 255 kl~~~~eEl~~s~~r--~-ar~~EqL~Aae~A~~~lEaElrRLRVQs 298 (384)
-|.+|++|-..+..= + +-+.|||+.+..+|..|-.+|.||+.+-
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766431 1 5688999999999999999999976653
No 201
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.17 E-value=1.3e+02 Score=22.97 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..+.+.|..+..+..+|..|+.++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554443
No 202
>COG5283 Phage-related tail protein [Function unknown]
Probab=35.11 E-value=5.3e+02 Score=31.22 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=61.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.++..++++++-+.+=+.++.-.=.-+.....-.+.|+.++.|....+.+-+.+-++.-..+.+++.-++.-+....+.+
T Consensus 40 ~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~ 119 (1213)
T COG5283 40 MLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVAS 119 (1213)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 34444555555555555555544444445555556666666655555555556666666666666665554444455566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh----cHHHHHHh
Q 016680 275 EKLEAAEGAKKALEMEMKKLRV----QTDQWKKA 304 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRV----QseQWRKA 304 (384)
+||...|..-..|.+++.-+=- |..-|+.+
T Consensus 120 ~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt 153 (1213)
T COG5283 120 EQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQT 153 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 6666666666666666533333 55555443
No 203
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.01 E-value=7.2e+02 Score=28.21 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.9
Q ss_pred hhHhhHHHhHH
Q 016680 67 IADLESQLGQA 77 (384)
Q Consensus 67 ~seLesql~qa 77 (384)
+.+|..+|.++
T Consensus 224 ~~~ln~~l~~l 234 (771)
T TIGR01069 224 IVKLNNKLAQL 234 (771)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 204
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.75 E-value=3.5e+02 Score=27.49 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhhhhcHHHHHHh
Q 016680 281 EGAKKALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 281 e~A~~~lEaElrRLRVQseQWRKA 304 (384)
--.|+.|-.++++|+-|.++-++.
T Consensus 225 ~~eke~L~~qv~klk~qLee~~~~ 248 (302)
T PF09738_consen 225 ADEKEELLEQVRKLKLQLEERQSE 248 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345788999999999999998864
No 205
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.44 E-value=6.3e+02 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
+.+.|...|..+-+||.....+......+-+.+-+++
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El 111 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSEL 111 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333333
No 206
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.20 E-value=4.9e+02 Score=29.22 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=69.7
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH--HH--
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA--IQ-- 272 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~--ar-- 272 (384)
+.|++..+.-|+.|.+.|-|||..|--+.++--.|+.-+..--++++.-.-+-+.-.-+.+.++-.|.+...++ ||
T Consensus 337 ~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~ 416 (654)
T KOG4809|consen 337 RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMN 416 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcC
Confidence 45688888999999999999999888888887777776654444444433333343445666666666654443 33
Q ss_pred --HHHHHHHHHHHHHHHHHHHhhhhhcHHHHH
Q 016680 273 --LKEKLEAAEGAKKALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 273 --~~EqL~Aae~A~~~lEaElrRLRVQseQWR 302 (384)
.+++..-.+.+....+.|+.+ ||++.=|
T Consensus 417 pe~~d~i~~le~e~~~y~de~~k--aqaevdr 446 (654)
T KOG4809|consen 417 PEFADQIKQLEKEASYYRDECGK--AQAEVDR 446 (654)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 457777778888877777753 5555433
No 207
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.78 E-value=3.4e+02 Score=24.06 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=47.1
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH---HhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN---EASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQ 272 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~---Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar 272 (384)
++.|+...+.++.-|-+.=.....||-.++.+|+.++.... ..-.++......-.-++.=||.-.|++++-....+.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455555555555555555555566666666665544322 233344444555555566677777888877777777
Q ss_pred HHHHH
Q 016680 273 LKEKL 277 (384)
Q Consensus 273 ~~EqL 277 (384)
|.+-.
T Consensus 108 lK~my 112 (120)
T PF12325_consen 108 LKEMY 112 (120)
T ss_pred HHHHH
Confidence 66544
No 208
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=33.45 E-value=1.2e+02 Score=25.33 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 208 NLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 208 ~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
-+|+.+|+||+.|+..+..=...|+..|
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444
No 209
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=33.10 E-value=4.1e+02 Score=29.76 Aligned_cols=118 Identities=25% Similarity=0.328 Sum_probs=67.1
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEK 276 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~Eq 276 (384)
..+-......|.-|--.|.+|+-++...++.++.|+.|+..--......+.........++.+.++.+-..-++.++...
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~a 492 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTA 492 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888889999999999999999999998853333333344444444445555555443333332332222
Q ss_pred HHHH--------HHHH----HHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 277 LEAA--------EGAK----KALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 277 L~Aa--------e~A~----~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
|..- +.-. ..++.||..|+-=++-=+|-.-++..-|..
T Consensus 493 l~el~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~ 542 (607)
T KOG0240|consen 493 LEELAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRK 542 (607)
T ss_pred HHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHh
Confidence 2110 1111 015666766666666556655555554444
No 210
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=33.06 E-value=4.7e+02 Score=25.43 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=61.5
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
+...+|......+..+.++=---|.+|..+....+.|..+...|...-. ....++++.+..+++..+.....-...+.
T Consensus 35 d~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~--E~LAr~al~~~~~le~~~~~~~~~~~~~~ 112 (225)
T COG1842 35 DMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN--EDLAREALEEKQSLEDLAKALEAELQQAE 112 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888999999999999999999876654332 22333444444445544444433333444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQ 297 (384)
++++..+..=..||.-+..+|-|
T Consensus 113 ~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 113 EQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443334444444444433
No 211
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.77 E-value=5.6e+02 Score=26.27 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=8.9
Q ss_pred HhhhhhHHHHHhhHHHHHHHH
Q 016680 255 SLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~E 275 (384)
++-.+-+++|+...++--+-+
T Consensus 194 ~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 194 EMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333
No 212
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=32.67 E-value=5.8e+02 Score=26.39 Aligned_cols=41 Identities=32% Similarity=0.498 Sum_probs=29.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHH----HHHHHHHhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQ----LEGMAQENKSLKKQL 235 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtE----Lq~l~~ENe~LK~ql 235 (384)
.|..|++...-||+-+|..=-.||+. +.++-+-|+.|.+.|
T Consensus 3 ~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~l 47 (305)
T PF14915_consen 3 MLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSL 47 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999988888874 455555555555544
No 213
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=32.34 E-value=93 Score=27.62 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=41.9
Q ss_pred CCCccccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 190 PEPEKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 190 ~e~E~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
.+++.+.++|-+..-..|-+|..-|.|.-..+.++-+||=.|+++-
T Consensus 48 ~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSEN 93 (120)
T KOG3650|consen 48 VEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSEN 93 (120)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 6677888899999999999999999999999999999999998773
No 214
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=32.27 E-value=5.8e+02 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=28.3
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
.+...|.....++..|..++-+.--.+..+..+.+.|+.++.+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777776666666666666666666666643
No 215
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=32.05 E-value=2e+02 Score=30.23 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=46.7
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
-=+|+.||--|.++|..|.--.-+|+.+.++++.--+.++.-...-+++...|.|-.+=++
T Consensus 146 ~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdelie 206 (405)
T KOG2010|consen 146 IYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIE 206 (405)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999987767666666666665555555444333
No 216
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.91 E-value=8.1e+02 Score=27.86 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=31.5
Q ss_pred hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhH------HHHHHHHcc
Q 016680 256 LNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAA------DAAASILAG 314 (384)
Q Consensus 256 l~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAA------EaAaAvLs~ 314 (384)
+..+..++..-.++...+.+.+...+.....++.++..++-+-..|.-.- +..+++|++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555566666776666655556666655444433333222 235777776
No 217
>smart00338 BRLZ basic region leucin zipper.
Probab=31.87 E-value=1.2e+02 Score=23.22 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
..+.+.|.+++.+..+|..|..++..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666543
No 218
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.86 E-value=5.6e+02 Score=25.98 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 240 SNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 240 ~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
.++......-.....++..+..++.+...+ +++...=+.++..+++.+..+.++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~-------I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESK-------IEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444444444443 333333344555555544444433
No 219
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=31.70 E-value=60 Score=29.05 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEAS 239 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea~ 239 (384)
.+.+..++|+.|.-||..||++|..-+
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 356778899999999999999998665
No 220
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=31.69 E-value=73 Score=28.60 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=29.8
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
.-..||+-||.++.|.+.....+..||..||.-+
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467899999999999999999999999998764
No 221
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.55 E-value=4.8e+02 Score=26.88 Aligned_cols=90 Identities=17% Similarity=0.256 Sum_probs=58.6
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
|++-|.+.+.-+.+-|...-...-|.++|++.-+.|...-...++ ||.--.--+.-+--
T Consensus 44 lEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh---------------------dlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 44 LEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSH---------------------DLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH---------------------HHhhhHHHHHHHHH
Confidence 566677777777777777777777777777777766555433333 33322222233444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 276 KLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 276 qL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
||..+-.--+.||.||+|||-..|-=+.++-
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555556799999999999997777654
No 222
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.47 E-value=9.5e+02 Score=28.56 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=17.5
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKS 230 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~ 230 (384)
++.++..+-+|++.++..|+.|=..+..-+-+|..
T Consensus 181 ~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~ 215 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQ 215 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 44455555555555555555554444444444433
No 223
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.25 E-value=8.3e+02 Score=27.76 Aligned_cols=14 Identities=7% Similarity=0.427 Sum_probs=7.3
Q ss_pred hhhHhhHHHhHHHH
Q 016680 66 RIADLESQLGQAQE 79 (384)
Q Consensus 66 r~seLesql~qaqe 79 (384)
.+.+|..+|.++..
T Consensus 228 ~~~~ln~~l~~l~~ 241 (782)
T PRK00409 228 SVVELNNEIRELRN 241 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555433
No 224
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.25 E-value=1.5e+02 Score=22.66 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
+++..|..|...+...+.+...+..++..|+.++..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666543
No 225
>PHA03155 hypothetical protein; Provisional
Probab=30.99 E-value=57 Score=29.14 Aligned_cols=24 Identities=46% Similarity=0.638 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
+.+..+||+.|.-||..||++|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457788999999999999999964
No 226
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=30.90 E-value=83 Score=30.12 Aligned_cols=28 Identities=36% Similarity=0.331 Sum_probs=15.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
...+.=..+..+.+||+.|+.++.+...
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~ 90 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666667766666554433
No 227
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.87 E-value=4.9e+02 Score=28.61 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=49.3
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHh-------HHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQEN-------KSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~EN-------e~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
.+.-|..|+.+|.+.+.+++.+.... -.|+.+|.+.-..|. ++...-+..+..+++...++...+..
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~------~e~~~~~~~~~~~~~~a~~~~~~L~~ 359 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR------SELQKITKSLLMQADAAQARESQLVS 359 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888877766632 234445444332221 11111223344455545555555555
Q ss_pred HHHHHHHHHH---HHHHHHhhhhhcHHHHH
Q 016680 276 KLEAAEGAKK---ALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 276 qL~Aae~A~~---~lEaElrRLRVQseQWR 302 (384)
+|...+.--. ..+.|+++|.-+.+-=|
T Consensus 360 ~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~ 389 (754)
T TIGR01005 360 DVNQLKAASAQAGEQQVDLDALQRDAAAKR 389 (754)
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHH
Confidence 5554432222 35667766665555443
No 228
>PRK11519 tyrosine kinase; Provisional
Probab=30.73 E-value=3.3e+02 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=22.2
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKS 230 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~ 230 (384)
+.=.+..+..|+.+|.+.|..|+.+..+|..
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4445667777788888888888877777654
No 229
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=30.55 E-value=8.7e+02 Score=28.03 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=64.7
Q ss_pred ccccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH--------------HhhhhhhhHHHHHHHHHHHhhh
Q 016680 193 EKVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN--------------EASSNISTAQKEKEEMTQSLNK 258 (384)
Q Consensus 193 E~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~--------------Ea~~~~~~A~~~e~e~~~kl~~ 258 (384)
|.+|..=|.....+|-.|...|..--+-=|..+..++.||.++. ....+...-.-.-..+...|..
T Consensus 438 eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk 517 (786)
T PF05483_consen 438 EQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKK 517 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444445555555666665555544444555666666666664 1122222222333455667788
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 259 LGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 259 ~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
+.+.+.-|.+++.++.-+..--+..+..|--||--+|.+..|
T Consensus 518 ~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~ 559 (786)
T PF05483_consen 518 QQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ 559 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877666666666666666555444
No 230
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.49 E-value=8e+02 Score=27.36 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHH--------------hhhhhhhHHHHHHHHHHHhhhhhHHHHHhhH
Q 016680 224 MAQENKSLKKQLNE--------------ASSNISTAQKEKEEMTQSLNKLGEEVQASKA 268 (384)
Q Consensus 224 l~~ENe~LK~ql~E--------------a~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~ 268 (384)
....|..||.+|.| .++.+.+..-..+++..+||.+.++|+.-..
T Consensus 158 AlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 158 ALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777742 2444445555556666677777777765544
No 231
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.31 E-value=80 Score=31.18 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=19.5
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 210 LQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 210 LKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
.-..+.+.=..+..+.+||+.|+.++.+.
T Consensus 57 ~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 57 VFDGISENLKDVNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444456778888888888887655
No 232
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=30.00 E-value=3.1e+02 Score=26.98 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=12.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 261 EEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 261 eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
+++++.......+..+|+++++.-+..+..|
T Consensus 122 ~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l 152 (310)
T PRK10559 122 EEIDQANNVLQTVLHQLAKAQATRDLAKLDL 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443333333344444444333333333
No 233
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=29.94 E-value=6.4e+02 Score=26.07 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=24.6
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
--+..|.. ..++.++..++.|+..+++...+.+.++.
T Consensus 85 ~~L~~ld~--~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 85 DLLVVYDN--GNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred CEEEEECc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544 45677788888888888887776655543
No 234
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.85 E-value=94 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.533 Sum_probs=16.7
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|....+.+.+++.+..+|..|..+|.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777766653
No 235
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.50 E-value=1.2e+02 Score=25.84 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
.++-..+.++..+.+||+.|+.+|.-.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888887543
No 236
>PHA03162 hypothetical protein; Provisional
Probab=29.18 E-value=60 Score=29.73 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
+.|..+||+.|.-||..||++|..-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999643
No 237
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.14 E-value=18 Score=39.51 Aligned_cols=110 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhhhhhhhHHHHH------HHHHHHhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGM----------AQENKSLKKQLNEASSNISTAQKEK------EEMTQSLN 257 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l----------~~ENe~LK~ql~Ea~~~~~~A~~~e------~e~~~kl~ 257 (384)
..+..++......+..++..+.+++..++.+ ...+..|..++..........+.-. .++...+.
T Consensus 188 ~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~ 267 (722)
T PF05557_consen 188 QSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENR 267 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888888888888877777777 3444444444432211111111111 11222333
Q ss_pred hhhHHHHH---hhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhcHHHHHH
Q 016680 258 KLGEEVQA---SKAEAIQLKEKLEAAEGAK---KALEMEMKKLRVQTDQWKK 303 (384)
Q Consensus 258 ~~~eEl~~---s~~r~ar~~EqL~Aae~A~---~~lEaElrRLRVQseQWRK 303 (384)
.+..|++. +..+..-|.|+...-+.-- +.+++++..|+||-.++..
T Consensus 268 ~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~ 319 (722)
T PF05557_consen 268 RLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLED 319 (722)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334332 2333444555555443322 2455777777777655443
No 238
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.12 E-value=18 Score=39.51 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh---hhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS---SNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~---~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
+++=.++.+||.++...+.....+.+.+..|-.++..+. ..++.-+..-.++..++.......++-.-.-.++.+++
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~ 400 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKL 400 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544321 12222222333333344443343333333345788889
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHH
Q 016680 278 EAAEGAKKALEMEMKKLRVQTDQW 301 (384)
Q Consensus 278 ~Aae~A~~~lEaElrRLRVQseQW 301 (384)
.+.+..++-+..|+..||-..++-
T Consensus 401 ~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 401 EALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888655443
No 239
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=28.73 E-value=1.3e+02 Score=22.32 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=29.0
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
.+++..+..|...+.+.+.+...|..++..|+.+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3677888899999999999999999999988764
No 240
>PRK11546 zraP zinc resistance protein; Provisional
Probab=28.71 E-value=1.1e+02 Score=28.03 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=30.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSN 241 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~ 241 (384)
..+-.++...|+.+|..|..||+.+..-+.-=...|...+.|
T Consensus 56 ~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kE 97 (143)
T PRK11546 56 HNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKE 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456678899999999999999999876655444444433333
No 241
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.63 E-value=1.8e+02 Score=27.38 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=16.7
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
.|+......+..|...+...+.++..+.++.++|-.-++.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444443
No 242
>PRK12705 hypothetical protein; Provisional
Probab=28.61 E-value=8e+02 Score=26.77 Aligned_cols=115 Identities=23% Similarity=0.330 Sum_probs=53.8
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEA 279 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~A 279 (384)
|.+.+.++......|.+++.+|... .+.+..+|++.+. +.. ..+.+. =+.+++++++.-.+.-.+-.|.
T Consensus 100 l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~-lt~-~eak~~---l~~~~~~~~~~e~~~~i~~~e~--- 168 (508)
T PRK12705 100 LDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAG-LTP-EQARKL---LLKLLDAELEEEKAQRVKKIEE--- 168 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhC-CCH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHH---
Confidence 4444445555555555555555444 4444444544322 211 112222 2345666666555544333332
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHhHH----HHHHHHccCc-cCCCccccccCC
Q 016680 280 AEGAKKALEMEMKKLRVQTDQWKKAAD----AAASILAGGV-EMNGRIPERCGS 328 (384)
Q Consensus 280 ae~A~~~lEaElrRLRVQseQWRKAAE----aAaAvLs~g~-~~nGk~~eR~gS 328 (384)
.|+...+.+-+++=+++=| |=|++ ....++.-.+ +|-|||..|-|.
T Consensus 169 --~~~~~a~~~A~~ii~~aiq-r~a~~~~~e~tvs~v~lp~demkGriIGreGr 219 (508)
T PRK12705 169 --EADLEAERKAQNILAQAMQ-RIASETASDLSVSVVPIPSDAMKGRIIGREGR 219 (508)
T ss_pred --HHHHHHHHHHHHHHHHHHH-HhccchhhhheeeeeecCChHhhccccCccch
Confidence 2333344444444444433 33333 3333433333 588999998874
No 243
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.58 E-value=5.9e+02 Score=27.44 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=58.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh----hhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI----STAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAE 281 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~----~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae 281 (384)
-|.+|=-+|- ..+..+..||..|+-|-.++-..+ ++...++.|+..+..++..|-...... -+-|+ .|-+
T Consensus 282 Kveelar~Lr---~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~ql--aLEEK-aaLr 355 (442)
T PF06637_consen 282 KVEELARSLR---AGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQL--ALEEK-AALR 355 (442)
T ss_pred HHHHHHHHHh---hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHH
Confidence 3444444443 246788999999988876665543 333344555555555554443322211 11233 3445
Q ss_pred HHHHHHHHHHhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 282 GAKKALEMEMKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 282 ~A~~~lEaElrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
--+..|+-||-..+-|.+|-+-.-.--.+-|-+
T Consensus 356 kerd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 356 KERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 556678888877777888877655444444433
No 244
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=28.24 E-value=3.6e+02 Score=22.96 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=23.0
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHH--HHHhHHHHHHHHHhhhhhh
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGM--AQENKSLKKQLNEASSNIS 243 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l--~~ENe~LK~ql~Ea~~~~~ 243 (384)
......+..+..+|-.-|++++.+ .++-..|+..|.+..-++.
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 333444444466666666666666 5555556655555444333
No 245
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.08 E-value=6.9e+02 Score=28.03 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=42.6
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGA 283 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A 283 (384)
..+|..|++.+...+++|.++..++..-...++.+.. +...+..|..=+.-.-...+..
T Consensus 85 ~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~---------------------~~~~~~~k~~LL~Ay~q~c~~~ 143 (632)
T PF14817_consen 85 EKEVERLRAEIQELDKEIESREREVSRQEASREQMLD---------------------KISDSRHKQLLLEAYSQQCEEQ 143 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666665544444443333 3333333443333333344444
Q ss_pred HHHHHHHHhhhhhcHHHHHHhHH
Q 016680 284 KKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 284 ~~~lEaElrRLRVQseQWRKAAE 306 (384)
...+-.=++||--|.+|-+.++-
T Consensus 144 ~~~l~e~~~rl~~~~~~~q~~~R 166 (632)
T PF14817_consen 144 RRILREYTKRLQGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666666666655543
No 246
>PRK01156 chromosome segregation protein; Provisional
Probab=28.02 E-value=8.9e+02 Score=27.13 Aligned_cols=104 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred cccHHhhhhchhHHHHHHh--------------hhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHH---Hh
Q 016680 194 KVSIHELTLTKDEINLLQN--------------KLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQ---SL 256 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA--------------~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~---kl 256 (384)
.++..++.....++.+|.. .|...-.+|.....+...++.++.+...++...+..-.++.. .+
T Consensus 590 ~e~~~~l~~l~~~l~~le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~ 669 (895)
T PRK01156 590 NEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDL 669 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQ 297 (384)
.+..+++.........+.+++.....-...++.++..++-|
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 710 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 247
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.99 E-value=4.3e+02 Score=27.52 Aligned_cols=71 Identities=31% Similarity=0.382 Sum_probs=43.2
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEE-VQASKAEAIQLKEKLEAAEGAKKALEM 289 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eE-l~~s~~r~ar~~EqL~Aae~A~~~lEa 289 (384)
=..|...+.+...+..+-+.|+.+.|..+.+|...+... ++ .++-.++...+.+++...+..-.++|.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-----------~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-----------KDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888775422111 11 222233344666666666655556665
Q ss_pred HHh
Q 016680 290 EMK 292 (384)
Q Consensus 290 Elr 292 (384)
++.
T Consensus 98 ~~~ 100 (418)
T TIGR00414 98 ELQ 100 (418)
T ss_pred HHH
Confidence 554
No 248
>PRK00846 hypothetical protein; Provisional
Probab=27.90 E-value=1.8e+02 Score=24.18 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=27.1
Q ss_pred cchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 64 GTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKL 102 (384)
Q Consensus 64 ~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el 102 (384)
-.||.+||.+|.-.+.=+-.+++.+..-...=.+-+..+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999998877777777777766554444444443
No 249
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.85 E-value=1.2e+02 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=24.5
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
+|..-|......|..|=..|-+.-..++.+.+||..|+.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666666666554
No 250
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.73 E-value=5.4e+02 Score=24.51 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhH-----HHHHhhHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGE-----EVQASKAE 269 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~e-----El~~s~~r 269 (384)
.|..++.....++.-|+...-..+..+.....+.+.|+.++.+....-....---..|...|...-+ -.++...|
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R 132 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER 132 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Q ss_pred HHHHHHHHHHH
Q 016680 270 AIQLKEKLEAA 280 (384)
Q Consensus 270 ~ar~~EqL~Aa 280 (384)
.+++..-|..+
T Consensus 133 l~~L~~~l~~~ 143 (251)
T PF11932_consen 133 LARLRAMLDDA 143 (251)
T ss_pred HHHHHHhhhcc
No 251
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=27.52 E-value=8.2e+02 Score=27.75 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=2.8
Q ss_pred HHHHHhhh
Q 016680 207 INLLQNKL 214 (384)
Q Consensus 207 I~eLKA~L 214 (384)
+++|=++|
T Consensus 513 ~~~li~~L 520 (771)
T TIGR01069 513 INVLIEKL 520 (771)
T ss_pred HHHHHHHH
Confidence 33333333
No 252
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.33 E-value=5.6e+02 Score=24.55 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQK 247 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~ 247 (384)
++..+|......+..-+-++-..|.++..|..+-+.|..++..+.........
T Consensus 28 ~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~ 80 (264)
T PF06008_consen 28 DLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNN 80 (264)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777888888888888888888888888755444433333
No 253
>PRK00295 hypothetical protein; Provisional
Probab=27.09 E-value=1.6e+02 Score=23.44 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=23.9
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKK 96 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk 96 (384)
.||.+||.+|.-.+.-+-.+++.+..-.+.=.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~ 36 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIE 36 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998888777777777766554433
No 254
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.88 E-value=2e+02 Score=24.00 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.7
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
.++..++.....+...|-..|...+..+..+..-|..+...|.-|...|
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777766554433
No 255
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.87 E-value=4e+02 Score=24.29 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
+++-.=.+|..+.+..+.++.|.+.+
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~ 144 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESA 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555554433
No 256
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=26.83 E-value=4e+02 Score=22.69 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=15.2
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
-.++..|..+|.+-+.+--.+...|..|-.++.
T Consensus 9 ~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~ 41 (106)
T PF05837_consen 9 QQESRSLQEKLSDVEKKRLRLKRRNQELAQELL 41 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 257
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.74 E-value=1.4e+02 Score=28.72 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=35.2
Q ss_pred hcccchhhHhhHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 016680 61 KKLGTRIADLESQLGQAQEELKNLKDQLASAE-----AAKKEAQEKLEK 104 (384)
Q Consensus 61 kk~~~r~seLesql~qaqedLKk~keQLa~aE-----~~Kk~A~~el~K 104 (384)
+..-.|+..|+.++.++..+|.++|+++...- ..|.+|..-|++
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~ 69 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQ 69 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 45567999999999999999999999986442 358888888874
No 258
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.51 E-value=5.7e+02 Score=24.34 Aligned_cols=84 Identities=19% Similarity=0.263 Sum_probs=43.5
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHH-------HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKS-------LKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKA 268 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~-------LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~ 268 (384)
|+.|+...+.-|.+.+..|-.=+.-++....-... |+.-++.+...+..+...-..+...|.--.+=|+....
T Consensus 72 Le~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~ 151 (188)
T PF05335_consen 72 LEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKR 151 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666655555544443333 33333344444444444444555555544555555555
Q ss_pred HHHHHHHHHHH
Q 016680 269 EAIQLKEKLEA 279 (384)
Q Consensus 269 r~ar~~EqL~A 279 (384)
|+..|..||..
T Consensus 152 Rve~L~~QL~~ 162 (188)
T PF05335_consen 152 RVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 259
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.89 E-value=1.1e+03 Score=27.50 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=15.2
Q ss_pred HHHHhHHHHHHHHccCccCCCccccccCCCCC
Q 016680 300 QWKKAADAAASILAGGVEMNGRIPERCGSMDK 331 (384)
Q Consensus 300 QWRKAAEaAaAvLs~g~~~nGk~~eR~gSld~ 331 (384)
+|+....+=++-|--| .--==|||.+-
T Consensus 488 ~~~~~~~~Lr~~L~~G-----ePCPVCGS~~H 514 (1047)
T PRK10246 488 ARIKDLEAQRAQLQAG-----QPCPLCGSTSH 514 (1047)
T ss_pred HHHHHHHHHHHhCCCC-----CCcCCCCcccC
Confidence 6666655555555554 22223888874
No 260
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.77 E-value=1e+03 Score=28.53 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHH---HHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh----
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEK---QLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS---- 266 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEt---ELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s---- 266 (384)
.+|.++|...+-.-.|=|++||+.|. +|..+.+=.-.+.-++-+--.++..++...++++.--.+.++|+...
T Consensus 234 rdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~i 313 (1243)
T KOG0971|consen 234 RDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAI 313 (1243)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016680 267 ----------KAEAIQLKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 267 ----------~~r~ar~~EqL~Aae~A~~~lEaElrRLR 295 (384)
..|+.-+--.++++..=.++||.+|-=||
T Consensus 314 EmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 314 EMATLDKEMAEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.40 E-value=1.5e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
|++|-.+|-..++.+..+..+|+.|+..+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666555543
No 262
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.30 E-value=5.5e+02 Score=23.74 Aligned_cols=87 Identities=21% Similarity=0.356 Sum_probs=42.1
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHH-------------HHHHHHhhhhhHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEK-------------EEMTQSLNKLGEEV 263 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e-------------~e~~~kl~~~~eEl 263 (384)
..||...+.+|+-|-.++-.-+.-| ..-++.+..|...+..|+.+. ..+..+++++.-+.
T Consensus 14 ~aeL~~a~~~I~~~q~r~a~a~~~~-------~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv 86 (136)
T PF11570_consen 14 RAELDQADEDIATLQERQASAEQAL-------NGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDV 86 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHH
Confidence 4566677777777666554433322 222333333333332222221 12234555566655
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016680 264 QASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 264 ~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQ 297 (384)
..+. -+|.||+.-..+++-||-|.|+=
T Consensus 87 ~nkq-------~~l~AA~~~l~~~~~el~~~~~a 113 (136)
T PF11570_consen 87 QNKQ-------NKLKAAQKELNAADEELNRIQAA 113 (136)
T ss_dssp HHHH-------HHHHHHHHHHHHHH-------HH
T ss_pred HHHH-------HHHHHHHHHHHHhhhhhHHHHHH
Confidence 5544 37888888888999998888763
No 263
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.04 E-value=1.7e+02 Score=27.58 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=28.9
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
.+..|....+.++.+|+.++...++|++.+..++..++........-|
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777776666666666666666655555544443333
No 264
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.01 E-value=1.1e+03 Score=26.97 Aligned_cols=90 Identities=22% Similarity=0.270 Sum_probs=56.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh---------------hhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHH
Q 016680 208 NLLQNKLDEKEKQLEGMAQENKSLKKQLNEA---------------SSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQ 272 (384)
Q Consensus 208 ~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea---------------~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar 272 (384)
..||-++.+.|+++..+-.|.+.++.-+.+. -+-+....++|...+.++-.|.-||.+...-.++
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~ 125 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTN 125 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777776655321 1223344567788888888888888888766666
Q ss_pred HHHHHHHHHHH-------HHHHHHHHhhhhhc
Q 016680 273 LKEKLEAAEGA-------KKALEMEMKKLRVQ 297 (384)
Q Consensus 273 ~~EqL~Aae~A-------~~~lEaElrRLRVQ 297 (384)
+.+.++.-... +..+|++-+|||-.
T Consensus 126 ~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e 157 (772)
T KOG0999|consen 126 VQEENERLEKVHSDLKESNAAVEDQRRRLRDE 157 (772)
T ss_pred HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 66555443322 33456665666543
No 265
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.96 E-value=1.5e+02 Score=24.79 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=35.1
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
++|...|..++.||+.|+.=.-.....|...++-|..|..++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888888888888888888888888777543
No 266
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.59 E-value=9.9e+02 Score=26.51 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=4.5
Q ss_pred CCCCCCCcC
Q 016680 14 SPRRPHQLR 22 (384)
Q Consensus 14 SPr~p~~lk 22 (384)
.|-.|...|
T Consensus 145 ~pwvP~~cr 153 (594)
T PF05667_consen 145 APWVPPFCR 153 (594)
T ss_pred CCCCChhhc
Confidence 355555555
No 267
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=24.57 E-value=52 Score=28.24 Aligned_cols=25 Identities=40% Similarity=0.403 Sum_probs=22.5
Q ss_pred cchhhHhhHHHhHHHHHHHHHHHHH
Q 016680 64 GTRIADLESQLGQAQEELKNLKDQL 88 (384)
Q Consensus 64 ~~r~seLesql~qaqedLKk~keQL 88 (384)
.+-|..|+.||.++|.||..++.||
T Consensus 77 ~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 77 VGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4589999999999999999999875
No 268
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=24.51 E-value=2.7e+02 Score=30.72 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.0
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
.....+..|+.++.+.+.++..+..++..|..+|..
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999998863
No 269
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.44 E-value=5.6e+02 Score=29.71 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=35.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKK 233 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ 233 (384)
.....||.+...+|.+|-..|...|..|-...-+|.+|-.
T Consensus 342 d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee 381 (961)
T KOG4673|consen 342 DDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEE 381 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999888888888765
No 270
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.35 E-value=8e+02 Score=25.35 Aligned_cols=43 Identities=30% Similarity=0.509 Sum_probs=38.5
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
|.++|..+...|..|-+.|-.--+.|..+..++.-||++|+..
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999743
No 271
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=23.99 E-value=7e+02 Score=24.51 Aligned_cols=26 Identities=4% Similarity=0.160 Sum_probs=14.0
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQL 221 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtEL 221 (384)
+...|...+.++..+++.|...+..+
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~~~~~ 109 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTTQRSV 109 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665555544433
No 272
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.95 E-value=5.6e+02 Score=23.39 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=18.6
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
+...+.+|..+-..|-+.+.+|.++..|++.|..++.+-
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555554433
No 273
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.66 E-value=4.1e+02 Score=30.78 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=17.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.++|-+.|..|+.+|.-..+-|-.|.-++.
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLe 122 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLE 122 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHH
Confidence 345555666666666666666666665554
No 274
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.66 E-value=3.8e+02 Score=27.96 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.|...+.+...+..+.+.|+.+.++.+.+|...+.... +.++-..+...+.+++...+..-.++|.++.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~-----------~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE-----------DAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777788888888887777754222211 1122222334556666555555555555544
No 275
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=23.65 E-value=5.6e+02 Score=23.31 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=30.6
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSN 241 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~ 241 (384)
-+...|++.+......+......|.+++++|.-....
T Consensus 19 ~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3457789999999999999999999999999765443
No 276
>PLN02678 seryl-tRNA synthetase
Probab=23.51 E-value=3.7e+02 Score=28.65 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=44.9
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..|...+.+...+..+-+.|+.+.+..+.+|...+... ++..+-.++...+.+++...+.....++.++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~-----------~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAK-----------EDATELIAETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888889888888888775322111 1222222344467777777666666666666
Q ss_pred h
Q 016680 292 K 292 (384)
Q Consensus 292 r 292 (384)
.
T Consensus 102 ~ 102 (448)
T PLN02678 102 D 102 (448)
T ss_pred H
Confidence 5
No 277
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.47 E-value=6.7e+02 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHH
Q 016680 218 EKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMT 253 (384)
Q Consensus 218 EtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~ 253 (384)
+.|...+.++-+.|+.++.+-..+++.|+..-..+.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443444444444333333
No 278
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.26 E-value=4.5e+02 Score=27.06 Aligned_cols=76 Identities=25% Similarity=0.280 Sum_probs=46.7
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
++..-+++.+.-+++|.--|||+|-.| ..|-...|.+..+ |=.++.+ --+||+.-..++++++
T Consensus 179 e~d~S~k~ik~~F~~l~~cL~dREvaL---l~EmdkVK~EAme----iL~aRqk----------kAeeLkrltd~A~~Ms 241 (302)
T PF07139_consen 179 EMDSSIKKIKQTFAELQSCLMDREVAL---LAEMDKVKAEAME----ILDARQK----------KAEELKRLTDRASQMS 241 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHH----------HHHHHHHHHHHHhhcC
Confidence 345557888999999999999999765 4555555555333 2222222 2346676666777766
Q ss_pred H-HHHHHHHHHHHHHHHHhhh
Q 016680 275 E-KLEAAEGAKKALEMEMKKL 294 (384)
Q Consensus 275 E-qL~Aae~A~~~lEaElrRL 294 (384)
| || .+|-||++..
T Consensus 242 E~Ql-------~ELRadIK~f 255 (302)
T PF07139_consen 242 EEQL-------AELRADIKHF 255 (302)
T ss_pred HHHH-------HHHHHHHHHH
Confidence 4 22 3566666544
No 279
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.14 E-value=6.2e+02 Score=23.64 Aligned_cols=63 Identities=32% Similarity=0.424 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH-HHHHhhhhhHHHHHhhHHHHHHHHHHH
Q 016680 216 EKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEE-MTQSLNKLGEEVQASKAEAIQLKEKLE 278 (384)
Q Consensus 216 DKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e-~~~kl~~~~eEl~~s~~r~ar~~EqL~ 278 (384)
+.+.++..+..+++.|..++.+....++.......+ .........+|++...+.-.++..+|+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 280
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.91 E-value=3.8e+02 Score=28.69 Aligned_cols=78 Identities=33% Similarity=0.359 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKA 286 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~ 286 (384)
...+=.+|...+.+...+..+-+.|+.+.|+.+.+|..+.....+ .+..-.+....++++|.+.+.+-.+
T Consensus 24 ~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~----------~~~~l~~e~~~l~~~l~~~e~~~~~ 93 (429)
T COG0172 24 DALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED----------DAEELIAEVKELKEKLKELEAALDE 93 (429)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch----------hHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334456677888888999999999999999888888744333222 1222223345677788777777777
Q ss_pred HHHHHhhh
Q 016680 287 LEMEMKKL 294 (384)
Q Consensus 287 lEaElrRL 294 (384)
++++|..+
T Consensus 94 ~~~~l~~~ 101 (429)
T COG0172 94 LEAELDTL 101 (429)
T ss_pred HHHHHHHH
Confidence 77777543
No 281
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.83 E-value=87 Score=28.29 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=9.9
Q ss_pred cHHhhhhchhHHHHHHhhhh
Q 016680 196 SIHELTLTKDEINLLQNKLD 215 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~Lm 215 (384)
|+.++..+++||..||.+|.
T Consensus 99 Le~e~~~Kdsei~~Lr~~L~ 118 (131)
T PF04859_consen 99 LEAELRAKDSEIDRLREKLD 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554443
No 282
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.82 E-value=7.2e+02 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=11.0
Q ss_pred HHHHHhhhhhcHHHHHHh
Q 016680 287 LEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 287 lEaElrRLRVQseQWRKA 304 (384)
+..|+.+|+-+.+.-|+-
T Consensus 86 ~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334666666666666654
No 283
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=22.71 E-value=4.3e+02 Score=24.79 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=31.7
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS 243 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~ 243 (384)
.++.++-.+|.+..---.+|.+-|.+|..|+..+...+.
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~ 98 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANE 98 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456668888998888899999999999999887755444
No 284
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=22.68 E-value=9.1e+02 Score=28.61 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=36.4
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-----------Hhhhhhh---hHHHHHHHHHHHhhhhhHHHH
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN-----------EASSNIS---TAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~-----------Ea~~~~~---~A~~~e~e~~~kl~~~~eEl~ 264 (384)
.|.....-+..|-.++-+-|........+-+.+...+. ++.+.|. .-..+..|+..+++.|.++.+
T Consensus 565 ~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~~~L~ee~~ 644 (984)
T COG4717 565 ALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQVARLREEQA 644 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555544442 3333332 222334455555666666666
Q ss_pred HhhHHHHHH
Q 016680 265 ASKAEAIQL 273 (384)
Q Consensus 265 ~s~~r~ar~ 273 (384)
....+++-|
T Consensus 645 af~~~v~~l 653 (984)
T COG4717 645 AFEERVEGL 653 (984)
T ss_pred HHHHHHHHh
Confidence 555555433
No 285
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.67 E-value=1.4e+03 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=29.5
Q ss_pred hHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 68 ADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 68 seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.+||.++.+++.+|..+.++++..-..-+++.+.+-
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~ 140 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLS 140 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 889999999999999999999887777666666664
No 286
>PRK14127 cell division protein GpsB; Provisional
Probab=22.60 E-value=2.3e+02 Score=24.90 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=37.7
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhH
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAA 305 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAA 305 (384)
||-.+|.+.-=. .|+..+++...-+..|..|+.+|+.+-++|+.-.
T Consensus 22 GYd~~EVD~FLd---~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 22 GYDQDEVDKFLD---DVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777776655 6777788888889999999999999999998743
No 287
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.58 E-value=1e+03 Score=28.73 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=64.5
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKL 277 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL 277 (384)
..|...+..+.+==..|+++.+++..+.--...|.+.|.-....++..+..-.+...+|++++.++++-.-+.--+...|
T Consensus 655 ~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l 734 (1141)
T KOG0018|consen 655 DQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKL 734 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 34666666555555556667777777777777888877766666666666666666777788877776555555566677
Q ss_pred HHHHHHHHHHHHHHhh
Q 016680 278 EAAEGAKKALEMEMKK 293 (384)
Q Consensus 278 ~Aae~A~~~lEaElrR 293 (384)
+-.+.-..+|+..|..
T Consensus 735 ~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 735 QNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666666543
No 288
>PRK11281 hypothetical protein; Provisional
Probab=22.48 E-value=4.7e+02 Score=31.22 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=26.7
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
-.+..+.+.+.+.|+.+|.+-..+++.+..+-+.|+..
T Consensus 72 L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~ 109 (1113)
T PRK11281 72 LDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 34455666777777777777777777777777777664
No 289
>PF13514 AAA_27: AAA domain
Probab=22.42 E-value=1.3e+03 Score=27.01 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=62.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKK 285 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~ 285 (384)
.+-+.-..|...+.+++.+.+.-+.+...|..+...+... ..-..++.....+-++++....+-..+.+++..++..-.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 690 (1111)
T PF13514_consen 612 AALEAAEELRAARAELEALRARRAAARAALAAALAALGPA-EELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELE 690 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666667777777777766666665444333220 000111112222334444455555667777777777777
Q ss_pred HHHHHHhhhhhcHHHHHHhHHHHHHHHc
Q 016680 286 ALEMEMKKLRVQTDQWKKAADAAASILA 313 (384)
Q Consensus 286 ~lEaElrRLRVQseQWRKAAEaAaAvLs 313 (384)
.++.++..+.-+-+.|+..=.++.+-|+
T Consensus 691 ~~~~~~~~~~~~~~~~~~~w~~~l~~~g 718 (1111)
T PF13514_consen 691 EAEAELQEAQEALEEWQEEWQEALAELG 718 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7888888888888888877666555443
No 290
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.12 E-value=9.4e+02 Score=25.36 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=24.6
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..++...+.+|..|+..|-+-+.++..+......|..--
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335566666666666666666666666666666665543
No 291
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.09 E-value=2.7e+02 Score=28.77 Aligned_cols=70 Identities=13% Similarity=0.316 Sum_probs=0.0
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-------------HhhhhhhhHHHHHHHHHHHhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN-------------EASSNISTAQKEKEEMTQSLNKLG 260 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~-------------Ea~~~~~~A~~~e~e~~~kl~~~~ 260 (384)
.....+|.........+-+..+.+-.+|..|+++.+..|.++. ..-..|..-+..-.+|-.++|.+.
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Q ss_pred HHH
Q 016680 261 EEV 263 (384)
Q Consensus 261 eEl 263 (384)
+-|
T Consensus 356 h~L 358 (359)
T PF10498_consen 356 HTL 358 (359)
T ss_pred hhc
No 292
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.08 E-value=3.7e+02 Score=21.02 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.3
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
..+..+...+.+.+.++..+..+|..|+.++..-
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888887643
No 293
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.83 E-value=2.1e+02 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=32.0
Q ss_pred cchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 64 GTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQE 100 (384)
Q Consensus 64 ~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~ 100 (384)
-.||.+|+.++..+..+...++-+|.....+|.....
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999988887654
No 294
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=21.76 E-value=1.1e+03 Score=26.53 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=39.1
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
+.......||-.+++-|.-++.-..+.+.+..++.+...++..|+-...+.+..|..|....+..
T Consensus 439 ~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~ 503 (607)
T KOG0240|consen 439 KQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQK 503 (607)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33334455666666666666666666666666666666666666655556555555555555544
No 295
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.65 E-value=5.5e+02 Score=25.20 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016680 262 EVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 262 El~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLR 295 (384)
|+++....+.++..=|.-+-.-|.+.-..+.+|.
T Consensus 27 ElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 27 ELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555566655
No 296
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.63 E-value=5.7e+02 Score=26.13 Aligned_cols=113 Identities=28% Similarity=0.354 Sum_probs=72.0
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh----------------------hhhhh-hHHHHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA----------------------SSNIS-TAQKEKEEMTQ 254 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea----------------------~~~~~-~A~~~e~e~~~ 254 (384)
..+...++.+.+-|..+...--.||++.=|-..|+++|..- -..++ .-.+...+-..
T Consensus 12 ~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~l 91 (355)
T PF09766_consen 12 FRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQL 91 (355)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHH
Confidence 44667788999999999999999999999999999999611 11110 00011122233
Q ss_pred HhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhcHHHHHHhHHHHHHHHcc
Q 016680 255 SLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEME-------MKKLRVQTDQWKKAADAAASILAG 314 (384)
Q Consensus 255 kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaE-------lrRLRVQseQWRKAAEaAaAvLs~ 314 (384)
-|..|..||.+.. ++.+++..-+..+..|.+| |..|--+-..+.+|+.--=-+|+.
T Consensus 92 ml~RL~~EL~~Rk----~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 92 MLARLEFELEQRK----RLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5777888888765 3445555555555544444 455556667777777766555543
No 297
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.60 E-value=1.8e+02 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.3
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
....++..|+++|.+.+.+++.+.++...++.++
T Consensus 67 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 67 SDSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888888888888888877765
No 298
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.56 E-value=4.5e+02 Score=21.43 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|-+-|..+..+..||=.||..|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~ 24 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIY 24 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 44667888889999999999885
No 299
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.52 E-value=9.2e+02 Score=26.34 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=43.7
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhhhhHHHHHh
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQ-KEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~-~~e~e~~~kl~~~~eEl~~s 266 (384)
-|...-..+.+|+.+|.....+=..+.+||+.|+..-......|..|= ....++..+..++..+..+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL 128 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 366777788888889999999999999999999887554444443322 22233333444444444433
No 300
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=21.47 E-value=2.8e+02 Score=29.10 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
|+-.-+|+++-.--+|-.+|++-.|--|+|.+
T Consensus 144 e~kk~aE~a~aka~aEA~k~Ka~aeAkkkAe~ 175 (387)
T COG3064 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEE 175 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33333444444444677888887776666554
No 301
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=21.47 E-value=8.3e+02 Score=28.21 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=55.1
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH---Hh----hhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN---EA----SSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~---Ea----~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
.....|...+..+|..|-.++-+||.+++-|.-....-...++ ++ ..-++.+....+-++.+|..+...++++
T Consensus 229 eey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~ 308 (786)
T PF05483_consen 229 EEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQES 308 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 3455566678889999999999999999988877776666553 22 1223345555555555666666666665
Q ss_pred hHHHHHHHHHHHHH
Q 016680 267 KAEAIQLKEKLEAA 280 (384)
Q Consensus 267 ~~r~ar~~EqL~Aa 280 (384)
...-..+.+.|..+
T Consensus 309 ~~tq~~le~~lq~~ 322 (786)
T PF05483_consen 309 ESTQKALEEDLQQA 322 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 44333444444443
No 302
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=21.43 E-value=8.1e+02 Score=24.31 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.5
Q ss_pred CCcccc
Q 016680 319 NGRIPE 324 (384)
Q Consensus 319 nGk~~e 324 (384)
.|.|..
T Consensus 191 dG~V~~ 196 (370)
T PRK11578 191 AGEVTQ 196 (370)
T ss_pred CcEEEe
Confidence 344433
No 303
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.03 E-value=8.9e+02 Score=24.66 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=55.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKK 285 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~ 285 (384)
.+.+||-.|-+-|-...-.+-.|.-|-|+=..-.-.|..-+-.-+++.--+.++..++++-..--.|+...++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d------- 150 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD------- 150 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 5667788888888888888888888877766666666666666667666666666666543332344444444
Q ss_pred HHHHHHhhhhhcH
Q 016680 286 ALEMEMKKLRVQT 298 (384)
Q Consensus 286 ~lEaElrRLRVQs 298 (384)
.|..|+.-||-|-
T Consensus 151 ~L~~e~~~Lre~L 163 (302)
T PF09738_consen 151 SLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555555
No 304
>COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]
Probab=20.91 E-value=1.6e+02 Score=25.00 Aligned_cols=44 Identities=30% Similarity=0.518 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhcHHHHHHh-HHHHHHHHccCccCCCccccccCCCCCCC
Q 016680 280 AEGAKKALEMEMKKLRVQTDQWKKA-ADAAASILAGGVEMNGRIPERCGSMDKHF 333 (384)
Q Consensus 280 ae~A~~~lEaElrRLRVQseQWRKA-AEaAaAvLs~g~~~nGk~~eR~gSld~~~ 333 (384)
+-.+..+|-+|+++. ++++|+-- +|+-|. | .+|+++.|+....|
T Consensus 33 S~~~et~ia~e~~k~--~t~~WqeEN~EaiA~----~----n~~vd~~G~~~a~~ 77 (80)
T COG5302 33 SALAETAIAAELRKS--ATDRWQEENAEAIAT----G----NRFVDVNGLFLAKY 77 (80)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhhHHHHHH----H----hhhhhhcCChhhhc
Confidence 456667888999876 68999976 444332 2 23677777765443
No 305
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.91 E-value=1.6e+02 Score=30.22 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
-+.|++..+.=|+-.|.+|+||++-+|..=.+...-...|
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL 161 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL 161 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH
Confidence 3677888888999999999999999997444433333333
No 306
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=20.80 E-value=7.5e+02 Score=23.73 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016680 218 EKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 218 EtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQ 297 (384)
|++-+.+.-=+|.|+.|=.+|......+++.--++....+|...|+++.+. -.+..|.||+--|+.|-.-|-=
T Consensus 81 EmeK~~~~LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCns-------gmeTCEeAREkaEa~L~~e~Kl 153 (176)
T PF06364_consen 81 EMEKNFVDLLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNS-------GMETCEEAREKAEAALVEERKL 153 (176)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444456777776666666666666666777777778888888876 3456778888888888666666
Q ss_pred HHHHHHhHH
Q 016680 298 TDQWKKAAD 306 (384)
Q Consensus 298 seQWRKAAE 306 (384)
|--|-+=|-
T Consensus 154 talWE~RAR 162 (176)
T PF06364_consen 154 TALWEQRAR 162 (176)
T ss_pred HHHHHHHHH
Confidence 777866553
No 307
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.48 E-value=3.5e+02 Score=21.59 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=34.5
Q ss_pred cccchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 62 KLGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 62 k~~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
....=+..|+.++..++.++++++.++...+..-.+.+..|.
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999988888888777775
No 308
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.48 E-value=83 Score=30.55 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCCc-cccHHhhhhchhHHHHHHhhhhhhHHHHH
Q 016680 190 PEPE-KVSIHELTLTKDEINLLQNKLDEKEKQLE 222 (384)
Q Consensus 190 ~e~E-~el~~EL~~~~~eI~eLKA~LmDKEtELq 222 (384)
.+.| .+|+.||.+.++||.-|+.=|-.||.-+.
T Consensus 42 Se~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ 75 (208)
T KOG4010|consen 42 SEEEKEELRTELAKVEEEIVTLRQVLAAKERHAA 75 (208)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 57999999999999999999999987543
No 309
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.48 E-value=5.5e+02 Score=30.76 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
+++.+|+....+|.+|--.+-+-...+.-+-.+|-.|+.++.+....-...-..|..+...++-+.+++..+..+.-+..
T Consensus 422 ~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~ 501 (1200)
T KOG0964|consen 422 DLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATM 501 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 310
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=9.4e+02 Score=26.73 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhhhcHHHHHHhHHH-HHHHHc
Q 016680 279 AAEGAKKALEMEMKKLRVQTDQWKKAADA-AASILA 313 (384)
Q Consensus 279 Aae~A~~~lEaElrRLRVQseQWRKAAEa-AaAvLs 313 (384)
-||+-+..=+||.-..|.+.|-|..-+++ ++..+.
T Consensus 425 ~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~ 460 (548)
T COG2268 425 EAEAIREKGKAEAEAKRALAEAIQVLGDAAAAELFK 460 (548)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555667777888999999999998 555555
No 311
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.32 E-value=5.4e+02 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=37.6
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
.-...||...-.++..|-+.|-|+..++..+.-|++.|..-|..+
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888899999999999999999999999998887644
No 312
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.23 E-value=4.8e+02 Score=21.60 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADA 307 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEa 307 (384)
..+..+++..+..-..|+.++.+++-|..+++.....
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666667777777777777777765543
No 313
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.18 E-value=5.2e+02 Score=21.61 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=48.9
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGA 283 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A 283 (384)
+-++..+...|..|-.+++........=..+| +.++..+...+.....-+..+.++..+.-.........
T Consensus 6 kre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L----------~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~ 75 (126)
T PF13863_consen 6 KREMFLVQLALDTKREEIERREEQLKQREEEL----------EKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKK 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333322222 23344444444555556666666555555555556666
Q ss_pred HHHHHHHHhhhhhcHHHHH
Q 016680 284 KKALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 284 ~~~lEaElrRLRVQseQWR 302 (384)
+...++|+.+|+.+.+.-+
T Consensus 76 ~~~k~~ei~~l~~~l~~l~ 94 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELK 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888888876544
No 314
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=20.17 E-value=1.8e+02 Score=27.25 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+|.|.|..|-..-+.|..|..+|.
T Consensus 1 SLeD~EsklN~AIERnalLE~ELd 24 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELD 24 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHH
Confidence 588999999999999999999984
No 315
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=20.07 E-value=6e+02 Score=22.32 Aligned_cols=29 Identities=41% Similarity=0.519 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhhcHHHHHHhHHHHHHHHc
Q 016680 285 KALEMEMKKLRVQTDQWKKAADAAASILA 313 (384)
Q Consensus 285 ~~lEaElrRLRVQseQWRKAAEaAaAvLs 313 (384)
..|..-.-+|+-|+.||-+.++...--|=
T Consensus 57 k~L~~~~~~l~kqt~qw~~~~~~~~~~LK 85 (121)
T PF06320_consen 57 KQLQRNTAKLAKQTDQWLKLVDSFNDALK 85 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667788899999988887765553
Done!