Query 016680
Match_columns 384
No_of_seqs 70 out of 72
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 95.5 0.97 3.3E-05 38.3 16.2 39 198-236 20-58 (284)
2 1c1g_A Tropomyosin; contractIl 95.4 1 3.6E-05 38.1 16.1 17 286-302 143-159 (284)
3 3tnu_B Keratin, type II cytosk 95.1 0.49 1.7E-05 39.9 13.0 92 197-291 28-119 (129)
4 3tnu_A Keratin, type I cytoske 94.7 0.43 1.5E-05 40.4 11.7 92 197-291 30-121 (131)
5 3na7_A HP0958; flagellar bioge 93.4 1.8 6.3E-05 39.8 14.2 26 241-266 98-123 (256)
6 3hnw_A Uncharacterized protein 93.3 0.4 1.4E-05 41.6 9.0 71 196-266 66-136 (138)
7 3u1c_A Tropomyosin alpha-1 cha 92.5 3.5 0.00012 33.6 13.1 88 207-294 4-91 (101)
8 1i84_S Smooth muscle myosin he 92.1 0.74 2.5E-05 50.9 11.2 84 196-279 855-938 (1184)
9 2fxo_A Myosin heavy chain, car 92.1 4.8 0.00017 33.9 14.9 106 197-305 12-120 (129)
10 3na7_A HP0958; flagellar bioge 91.3 4.2 0.00014 37.4 13.8 105 196-300 30-150 (256)
11 1i84_S Smooth muscle myosin he 90.7 0.78 2.7E-05 50.8 9.5 74 194-267 860-933 (1184)
12 3u59_A Tropomyosin beta chain; 90.1 6.6 0.00023 31.8 13.1 86 208-293 5-90 (101)
13 1ic2_A Tropomyosin alpha chain 89.4 3.7 0.00013 32.1 10.0 74 209-282 3-76 (81)
14 2i7u_A Four-alpha-helix bundle 87.8 0.34 1.2E-05 36.8 2.8 23 298-320 12-34 (62)
15 3oja_B Anopheles plasmodium-re 87.6 8.7 0.0003 38.0 13.7 42 195-236 453-494 (597)
16 1wt6_A Myotonin-protein kinase 87.6 1.1 3.7E-05 36.4 5.9 37 273-311 43-79 (81)
17 3vkg_A Dynein heavy chain, cyt 87.6 3.9 0.00013 50.4 13.1 38 199-236 1928-1965(3245)
18 3vkg_A Dynein heavy chain, cyt 86.6 17 0.00057 45.2 17.6 49 194-242 2010-2058(3245)
19 2v71_A Nuclear distribution pr 84.4 23 0.00077 32.4 13.6 19 213-231 25-43 (189)
20 2b9c_A Striated-muscle alpha t 83.2 12 0.00041 32.7 10.9 61 225-292 51-111 (147)
21 2fxo_A Myosin heavy chain, car 80.9 24 0.00081 29.6 14.1 106 195-300 17-122 (129)
22 2xnx_M M protein, M1-BC1; cell 79.0 2.7 9.3E-05 37.3 5.3 35 257-291 104-138 (146)
23 2v71_A Nuclear distribution pr 78.7 39 0.0013 30.8 14.2 79 217-295 47-129 (189)
24 2eqb_B RAB guanine nucleotide 77.2 12 0.00043 31.0 8.5 30 196-225 3-32 (97)
25 2dfs_A Myosin-5A; myosin-V, in 75.6 36 0.0012 37.8 14.1 14 287-300 1061-1074(1080)
26 3a7p_A Autophagy protein 16; c 74.9 16 0.00054 32.6 9.0 47 194-240 71-117 (152)
27 2dfs_A Myosin-5A; myosin-V, in 71.9 24 0.00084 39.2 11.7 12 205-216 960-971 (1080)
28 3i00_A HIP-I, huntingtin-inter 71.2 43 0.0015 28.4 10.6 51 215-268 11-61 (120)
29 3oja_B Anopheles plasmodium-re 68.9 81 0.0028 31.1 13.6 10 293-302 562-571 (597)
30 2v4h_A NF-kappa-B essential mo 66.3 59 0.002 27.7 10.3 35 203-237 22-56 (110)
31 2eqb_B RAB guanine nucleotide 63.8 63 0.0021 26.8 12.2 85 206-297 6-91 (97)
32 2jee_A YIIU; FTSZ, septum, coi 62.6 54 0.0019 26.4 9.0 54 251-304 17-70 (81)
33 1gk4_A Vimentin; intermediate 62.3 55 0.0019 25.6 10.8 69 220-291 2-70 (84)
34 2ocy_A RAB guanine nucleotide 61.5 83 0.0029 27.9 10.8 31 65-95 13-43 (154)
35 3hnw_A Uncharacterized protein 60.5 56 0.0019 28.1 9.4 31 206-236 69-99 (138)
36 3iox_A AGI/II, PA; alpha helix 60.5 1.1E+02 0.0037 31.9 12.9 34 210-243 7-40 (497)
37 2v4h_A NF-kappa-B essential mo 60.4 32 0.0011 29.2 7.6 36 197-236 37-72 (110)
38 3mq7_A Bone marrow stromal ant 56.7 47 0.0016 28.7 8.0 47 202-248 50-100 (121)
39 3nmd_A CGMP dependent protein 55.9 19 0.00064 28.6 5.1 42 195-236 23-64 (72)
40 2yy0_A C-MYC-binding protein; 54.7 18 0.00061 26.7 4.6 33 204-236 18-50 (53)
41 3mov_A Lamin-B1; LMNB1, B-type 54.4 52 0.0018 26.7 7.7 72 217-291 10-81 (95)
42 3fpp_A Macrolide-specific effl 52.2 54 0.0018 30.0 8.5 29 195-223 66-94 (341)
43 1gd2_E Transcription factor PA 51.8 20 0.00068 27.9 4.6 41 202-242 26-66 (70)
44 3mq7_A Bone marrow stromal ant 51.3 21 0.00073 30.8 5.1 37 200-236 73-109 (121)
45 3ghg_A Fibrinogen alpha chain; 51.3 1.1E+02 0.0038 32.2 11.3 88 203-297 62-153 (562)
46 2xnx_M M protein, M1-BC1; cell 50.9 38 0.0013 30.1 6.8 26 272-297 70-95 (146)
47 2e7s_A RAB guanine nucleotide 50.7 92 0.0032 27.2 9.1 24 213-236 33-56 (135)
48 1t6f_A Geminin; coiled-coil, c 50.0 22 0.00076 25.0 4.1 27 206-232 8-34 (37)
49 2e7s_A RAB guanine nucleotide 48.2 27 0.00091 30.6 5.3 18 216-233 64-81 (135)
50 3ol1_A Vimentin; structural ge 47.8 78 0.0027 26.3 8.0 13 286-298 105-117 (119)
51 2efr_A General control protein 47.3 1.5E+02 0.0051 26.2 13.8 69 196-264 26-108 (155)
52 1x8y_A Lamin A/C; structural p 47.1 1E+02 0.0035 24.2 8.4 41 251-291 32-72 (86)
53 3jsv_C NF-kappa-B essential mo 46.2 65 0.0022 26.7 7.1 32 200-235 18-49 (94)
54 4dk0_A Putative MACA; alpha-ha 43.8 46 0.0016 30.8 6.6 28 196-223 68-95 (369)
55 3qh9_A Liprin-beta-2; coiled-c 41.0 27 0.00092 28.3 3.9 31 197-227 46-76 (81)
56 1nkp_B MAX protein, MYC proto- 40.0 45 0.0015 25.7 5.0 37 200-236 42-78 (83)
57 3htk_A Structural maintenance 39.8 56 0.0019 23.5 5.2 31 204-234 25-55 (60)
58 3tnu_A Keratin, type I cytoske 39.7 1.3E+02 0.0043 25.1 8.1 77 200-300 26-102 (131)
59 3tnu_B Keratin, type II cytosk 39.5 1.6E+02 0.0055 24.4 8.7 29 272-300 72-100 (129)
60 3qne_A Seryl-tRNA synthetase, 39.2 78 0.0027 32.4 8.0 71 212-293 33-103 (485)
61 1dip_A Delta-sleep-inducing pe 38.8 22 0.00076 28.6 3.1 32 204-235 14-45 (78)
62 1dh3_A Transcription factor CR 38.1 43 0.0015 24.6 4.4 30 211-240 21-50 (55)
63 1wle_A Seryl-tRNA synthetase; 38.0 1.8E+02 0.0061 29.8 10.4 77 213-292 71-147 (501)
64 3bas_A Myosin heavy chain, str 36.8 1.5E+02 0.0053 23.3 10.1 42 196-237 12-53 (89)
65 4fm3_A Uncharacterized hypothe 36.2 1.3E+02 0.0044 24.9 7.4 67 198-264 29-95 (98)
66 1uii_A Geminin; human, DNA rep 36.1 61 0.0021 26.3 5.3 39 200-238 41-79 (83)
67 1joc_A EEA1, early endosomal a 35.9 58 0.002 27.2 5.4 35 205-239 4-38 (125)
68 3nmd_A CGMP dependent protein 35.6 30 0.001 27.4 3.4 31 207-237 21-51 (72)
69 1g6u_A Domain swapped dimer; d 35.2 73 0.0025 23.1 5.0 37 200-236 2-44 (48)
70 2dq0_A Seryl-tRNA synthetase; 35.0 71 0.0024 32.1 6.8 71 212-293 31-101 (455)
71 3efg_A Protein SLYX homolog; x 34.9 93 0.0032 24.4 6.1 41 63-103 12-52 (78)
72 1wle_A Seryl-tRNA synthetase; 34.6 1.9E+02 0.0065 29.6 10.0 12 206-217 49-60 (501)
73 4h22_A Leucine-rich repeat fli 34.3 1.5E+02 0.005 25.0 7.5 58 201-265 26-83 (103)
74 1vcs_A Vesicle transport throu 34.1 1.5E+02 0.0051 23.9 7.4 86 204-298 11-97 (102)
75 3oja_A Leucine-rich immune mol 33.9 1.7E+02 0.0059 28.2 9.2 41 211-251 434-474 (487)
76 1zxa_A CGMP-dependent protein 33.8 27 0.00093 27.2 2.8 29 61-89 21-49 (67)
77 3bas_A Myosin heavy chain, str 32.8 1.8E+02 0.0062 22.9 8.2 40 195-234 18-57 (89)
78 3o0z_A RHO-associated protein 32.5 2.8E+02 0.0095 25.0 13.3 96 200-295 43-149 (168)
79 2ocy_A RAB guanine nucleotide 31.9 2.7E+02 0.0092 24.6 12.7 23 273-295 120-142 (154)
80 3u59_A Tropomyosin beta chain; 31.7 2E+02 0.0067 23.0 11.2 31 204-234 22-52 (101)
81 2dq3_A Seryl-tRNA synthetase; 30.4 76 0.0026 31.4 6.1 71 212-293 30-100 (425)
82 1nkp_A C-MYC, MYC proto-oncoge 30.3 82 0.0028 24.9 5.2 38 200-237 47-84 (88)
83 1yhn_B RILP, RAB interacting l 30.0 47 0.0016 25.9 3.5 31 198-228 3-33 (65)
84 1nlw_A MAD protein, MAX dimeri 29.6 83 0.0028 24.6 5.0 39 198-236 40-78 (80)
85 1ses_A Seryl-tRNA synthetase; 28.5 2.2E+02 0.0076 28.1 9.1 69 212-293 28-96 (421)
86 2dgc_A Protein (GCN4); basic d 28.0 72 0.0025 24.0 4.3 28 211-238 29-56 (63)
87 3he5_A Synzip1; heterodimeric 28.0 1E+02 0.0035 22.4 4.8 18 217-234 8-25 (49)
88 1t2k_D Cyclic-AMP-dependent tr 27.5 1.1E+02 0.0038 22.4 5.1 23 214-236 24-46 (61)
89 3q8t_A Beclin-1; autophagy, AT 27.4 2.4E+02 0.0083 22.6 13.4 33 197-229 10-42 (96)
90 1ci6_A Transcription factor AT 27.1 1.3E+02 0.0043 22.5 5.4 27 212-238 23-49 (63)
91 1ci6_A Transcription factor AT 26.8 1.5E+02 0.0051 22.1 5.8 33 204-236 29-61 (63)
92 1ses_A Seryl-tRNA synthetase; 26.6 2.3E+02 0.0079 28.0 8.8 13 205-217 9-21 (421)
93 4dk0_A Putative MACA; alpha-ha 26.5 2.6E+02 0.0089 25.7 8.6 27 210-236 68-94 (369)
94 2w83_C C-JUN-amino-terminal ki 26.0 2.6E+02 0.0088 22.5 8.7 67 218-294 8-77 (77)
95 2f1m_A Acriflavine resistance 25.6 3.4E+02 0.012 23.8 9.0 7 319-325 138-144 (277)
96 1go4_E MAD1 (mitotic arrest de 25.5 2.2E+02 0.0074 23.7 7.0 35 203-237 10-44 (100)
97 3lss_A Seryl-tRNA synthetase; 25.3 2.8E+02 0.0097 28.3 9.3 36 212-247 37-72 (484)
98 1wlq_A Geminin; coiled-coil; 2 24.8 1E+02 0.0035 25.0 4.8 38 200-237 33-70 (83)
99 1jnm_A Proto-oncogene C-JUN; B 24.7 1E+02 0.0034 22.7 4.5 27 212-238 22-48 (62)
100 1zxa_A CGMP-dependent protein 24.6 67 0.0023 25.0 3.6 39 194-232 14-52 (67)
101 4emc_A Monopolin complex subun 24.4 1.4E+02 0.0046 27.6 6.1 35 70-104 32-66 (190)
102 4gkw_A Spindle assembly abnorm 24.4 3.7E+02 0.013 23.8 12.7 34 203-236 9-42 (167)
103 2oa5_A Hypothetical protein BQ 24.3 35 0.0012 29.0 2.1 24 214-237 10-33 (110)
104 2fqm_A Phosphoprotein, P prote 23.8 32 0.0011 27.4 1.6 14 295-308 30-43 (75)
105 3trt_A Vimentin; cytoskeleton, 23.7 64 0.0022 24.3 3.3 27 198-224 49-75 (77)
106 3ol1_A Vimentin; structural ge 23.7 3.1E+02 0.011 22.6 13.4 36 271-306 72-107 (119)
107 1fxk_C Protein (prefoldin); ar 23.4 1.5E+02 0.0052 24.1 5.8 37 64-100 94-130 (133)
108 3viq_A SWI5-dependent recombin 23.2 2.1E+02 0.007 24.3 6.7 46 270-315 16-62 (122)
109 3cve_A Homer protein homolog 1 22.8 2.7E+02 0.0093 21.8 6.8 44 251-294 4-47 (72)
110 2wvr_A Geminin; DNA replicatio 22.2 1.2E+02 0.004 28.4 5.3 39 200-238 110-148 (209)
111 3q0x_A Centriole protein; cent 21.9 1.4E+02 0.0047 27.9 5.8 36 205-240 171-206 (228)
112 2oqq_A Transcription factor HY 21.9 1.8E+02 0.0061 21.0 5.0 33 203-235 8-40 (42)
113 1dh3_A Transcription factor CR 21.2 1.1E+02 0.0038 22.3 4.1 28 65-92 22-49 (55)
114 2zxx_A Geminin; coiled-coil, c 20.9 1.1E+02 0.0038 24.5 4.3 41 200-240 29-69 (79)
115 1t2k_D Cyclic-AMP-dependent tr 20.8 1.6E+02 0.0056 21.4 4.9 32 204-235 28-59 (61)
116 3u06_A Protein claret segregat 20.8 1.4E+02 0.0049 29.6 6.0 39 65-103 17-55 (412)
117 3fpp_A Macrolide-specific effl 20.7 2.5E+02 0.0087 25.5 7.3 36 261-296 114-149 (341)
118 3a7o_A Autophagy protein 16; c 20.4 1.8E+02 0.0062 23.2 5.3 37 195-231 22-58 (75)
119 3o0z_A RHO-associated protein 20.2 4.7E+02 0.016 23.4 11.5 92 205-296 6-111 (168)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.48 E-value=0.97 Score=38.32 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=17.1
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..|.....+|..|+..+...+.++..+..+...+...+.
T Consensus 20 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (284)
T 1c1g_A 20 DRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELD 58 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.36 E-value=1 Score=38.10 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhcHHHHH
Q 016680 286 ALEMEMKKLRVQTDQWK 302 (384)
Q Consensus 286 ~lEaElrRLRVQseQWR 302 (384)
.++.++..++.....|+
T Consensus 143 ~~~~~l~~~~~~~~~~~ 159 (284)
T 1c1g_A 143 IQEIQLKEAKHIAEDAD 159 (284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 3
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.08 E-value=0.49 Score=39.89 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=64.7
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEK 276 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~Eq 276 (384)
...|...+.+|.+|+-.+-..+.||+++...|..|...|.++-..-. ..-.++..++..++.+|......-++....
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999876643222 334566677888888888776654444433
Q ss_pred HHHHHHHHHHHHHHH
Q 016680 277 LEAAEGAKKALEMEM 291 (384)
Q Consensus 277 L~Aae~A~~~lEaEl 291 (384)
...-=-.|-.||.|+
T Consensus 105 Yq~LlnvKl~Ld~EI 119 (129)
T 3tnu_B 105 YQELMNTKLALDVEI 119 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445677888887
No 4
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.70 E-value=0.43 Score=40.39 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=59.9
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEK 276 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~Eq 276 (384)
...|...+.+|.+|+-.+-..+.||+++...|..|...|.++-.... ..-.++..++..++.+|......-++....
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999876644222 333466677888888888776654544433
Q ss_pred HHHHHHHHHHHHHHH
Q 016680 277 LEAAEGAKKALEMEM 291 (384)
Q Consensus 277 L~Aae~A~~~lEaEl 291 (384)
...-=-.|-.|+.|+
T Consensus 107 Yq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 107 YKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445677888887
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.41 E-value=1.8 Score=39.83 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 241 NISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 241 ~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
+|..++.....+-.++-.+++.++..
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333333344444333
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.35 E-value=0.4 Score=41.58 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=56.8
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHh
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQAS 266 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s 266 (384)
+.+||-+...++..|...|.+++.|+..+-.++..++.+++++..++...+..-.+...++..++-++..+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788899999999999999999999999888888888888887777777777777666666666665543
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=92.47 E-value=3.5 Score=33.64 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=61.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKA 286 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~ 286 (384)
++-+|.+|.-.-.+.....+..+.+..++..+-.....+..--..+.-|+.+++.+|+....+......+|+.++-....
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~ 83 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666777777777776655443332223333344589999999999999888888999999888888
Q ss_pred HHHHHhhh
Q 016680 287 LEMEMKKL 294 (384)
Q Consensus 287 lEaElrRL 294 (384)
.|+|+.-|
T Consensus 84 aE~ev~~L 91 (101)
T 3u1c_A 84 AESEVASL 91 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887433
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.14 E-value=0.74 Score=50.94 Aligned_cols=84 Identities=13% Similarity=0.206 Sum_probs=43.7
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKE 275 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~E 275 (384)
...++...+.++..|+.+|...+..+..+..+...|..++.++...+........++..++..+..++.+...+...+.+
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777666666666666666666666665554444433333333333344444444333333333333
Q ss_pred HHHH
Q 016680 276 KLEA 279 (384)
Q Consensus 276 qL~A 279 (384)
+|..
T Consensus 935 elee 938 (1184)
T 1i84_S 935 RIEE 938 (1184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 9
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.09 E-value=4.8 Score=33.89 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=60.1
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhH---HHHHHHHHHHhhhhhHHHHHhhHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTA---QKEKEEMTQSLNKLGEEVQASKAEAIQL 273 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A---~~~e~e~~~kl~~~~eEl~~s~~r~ar~ 273 (384)
..|++.++.+|..|+.+|..-+.....+...|..|-.+.+.....+.+- -+..++...+|..-..+|.. ...-+
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~---~l~el 88 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEA---KVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHH
Confidence 5678889999999999998777777777776666655554332222211 12223444444444444432 22344
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhH
Q 016680 274 KEKLEAAEGAKKALEMEMKKLRVQTDQWKKAA 305 (384)
Q Consensus 274 ~EqL~Aae~A~~~lEaElrRLRVQseQWRKAA 305 (384)
.++|+--+..+..|.++-++|--++.-+++--
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555554433
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.33 E-value=4.2 Score=37.39 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=47.2
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh----------------hHHHHHHHHHHHhhhh
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS----------------TAQKEKEEMTQSLNKL 259 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~----------------~A~~~e~e~~~kl~~~ 259 (384)
|..+|.....++..|+..+....+++..+..+...+..+|..+...+. +.....+.+..+++.+
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444444443322222 1112222222344445
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 260 GEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 260 ~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
+.++.+-..+...+.+.+...+..-..+++++..++...+.
T Consensus 110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444444444444455555444444443
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=90.67 E-value=0.78 Score=50.77 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=45.4
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASK 267 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~ 267 (384)
..+..+|...+..+..+...+.+.+.++..+..+...|..++......+..+...-..+..++..+.+++.+..
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888887777777777754444333333333333333333444443333
No 12
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=90.05 E-value=6.6 Score=31.79 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=58.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 016680 208 NLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKAL 287 (384)
Q Consensus 208 ~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~l 287 (384)
+-+|.+|.-.-.+..+..+.-+.|..++..+-.....+..--..+.-++..+..+++.+..+...+..+|+.++-+....
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~A 84 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665555566666666666666666554432222223333455888999999999998888899999998888888
Q ss_pred HHHHhh
Q 016680 288 EMEMKK 293 (384)
Q Consensus 288 EaElrR 293 (384)
|+|+.-
T Consensus 85 E~evas 90 (101)
T 3u59_A 85 EAEVAS 90 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888743
No 13
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.36 E-value=3.7 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHH
Q 016680 209 LLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEG 282 (384)
Q Consensus 209 eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~ 282 (384)
.||-+|.-...++....+.-+.+..++.++-.....+..--..+..|+.+++++|+++..+......+|+.++-
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766554443333444455568899999999998888888888876653
No 14
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=87.76 E-value=0.34 Score=36.80 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHHHHccCccCCC
Q 016680 298 TDQWKKAADAAASILAGGVEMNG 320 (384)
Q Consensus 298 seQWRKAAEaAaAvLs~g~~~nG 320 (384)
-+.|.|-||.||-+|-||.+++|
T Consensus 12 feewkklaeeaaklleggggggg 34 (62)
T 2i7u_A 12 FEEWKKLAEEAAKLLEGGGGGGG 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCch
Confidence 47899999999999998865433
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.61 E-value=8.7 Score=38.02 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=32.6
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.+.+++...+.+|..|++++...+..++.+.++.+.+...+.
T Consensus 453 ~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 466678888888888999888888888888888777665543
No 16
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.59 E-value=1.1 Score=36.43 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHHHHHHH
Q 016680 273 LKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAADAAASI 311 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAEaAaAv 311 (384)
..-+|..++.=|.+|++||++|+.+.+..| ++.++||
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq--~~~~~~~ 79 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQ--AEGATAV 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchhhc
Confidence 335888999999999999999999999977 5556665
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.57 E-value=3.9 Score=50.43 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.4
Q ss_pred hhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 199 ELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 199 EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.|..+...|++|+..|.+++.+|+.-.++.+.+-.+|.
T Consensus 1928 KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~ 1965 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999998887766663
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.57 E-value=17 Score=45.16 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=40.7
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
..++.+|+.++.+....+++|..++.+|+.+.+..+.|+.+..++..+.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999999999998888888887765543
No 19
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.44 E-value=23 Score=32.43 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHhHHH
Q 016680 213 KLDEKEKQLEGMAQENKSL 231 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~L 231 (384)
.+.+.+.||.-+.+.-..|
T Consensus 25 ~~~~le~El~EFqesSrEL 43 (189)
T 2v71_A 25 SFQEARDELVEFQEGSREL 43 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 20
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=83.18 E-value=12 Score=32.67 Aligned_cols=61 Identities=26% Similarity=0.351 Sum_probs=47.7
Q ss_pred HHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 225 AQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 225 ~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.+....|-.+|++|..-.+.|..+-.++..||..++.+|+.+ -+++++++.--..||.||+
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLera-------eeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA-------EERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344557788888998888888899999999999999999844 4556666666667777765
No 21
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.92 E-value=24 Score=29.62 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=73.0
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLK 274 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~ 274 (384)
.+..++...+..+.......-+.|.....+.++...|..+|..-......|...-..+..+-..|...+.....|....-
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777888888888888888888643333333333333444444445666666666666677
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 275 EKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 275 EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
++...-.+.+.-|+.++.-|+-|.+.
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999999998887664
No 22
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=79.03 E-value=2.7 Score=37.33 Aligned_cols=35 Identities=40% Similarity=0.496 Sum_probs=3.6
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 257 NKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 257 ~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..++++..-|.+---.+.--|+|+..|+..+|++|
T Consensus 104 aKLeEekQIseASRqgLrRDLeASReAKKqlEadl 138 (146)
T 2xnx_M 104 AKLEEEKQISDASRQSLRRDLDASREAKKQVEKDL 138 (146)
T ss_dssp HHHGGGTTTC-------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333445556677777777776665
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.71 E-value=39 Score=30.85 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHH----hhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 217 KEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQS----LNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 217 KEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~k----l~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.|++|......|..|+.++.....++...+++-...... ++.|..|+..-......+..+++--|.+|..||.-.|
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356666666677777777776666776666666665554 6666777766666667888888888888888886655
Q ss_pred hhh
Q 016680 293 KLR 295 (384)
Q Consensus 293 RLR 295 (384)
-+-
T Consensus 127 ~~~ 129 (189)
T 2v71_A 127 ATI 129 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.23 E-value=12 Score=31.05 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=18.3
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMA 225 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~ 225 (384)
|..+|...+.+|..|...+-+.+.++..+.
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455666777777777766666666665544
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.63 E-value=36 Score=37.85 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=5.5
Q ss_pred HHHHHhhhhhcHHH
Q 016680 287 LEMEMKKLRVQTDQ 300 (384)
Q Consensus 287 lEaElrRLRVQseQ 300 (384)
++.+-..|....++
T Consensus 1061 ~~~~~~~~~~~~~~ 1074 (1080)
T 2dfs_A 1061 LVEETKQLELDLND 1074 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444333
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.86 E-value=16 Score=32.64 Aligned_cols=47 Identities=21% Similarity=0.139 Sum_probs=40.8
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
..|+.||......|..|+..|..|.+-++.+.+|+..|+.+++.+-.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~ 117 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQ 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888899999999999999999999999999999999999775533
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.94 E-value=24 Score=39.18 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.9
Q ss_pred hHHHHHHhhhhh
Q 016680 205 DEINLLQNKLDE 216 (384)
Q Consensus 205 ~eI~eLKA~LmD 216 (384)
.++..|+..|.+
T Consensus 960 ~e~~~L~~~l~~ 971 (1080)
T 2dfs_A 960 TETEKLRSDVER 971 (1080)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.15 E-value=43 Score=28.41 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhH
Q 016680 215 DEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKA 268 (384)
Q Consensus 215 mDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~ 268 (384)
.++|..+..|.-+++.|+.+++.... .+..--.++...+.+|+-||+....
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~---E~q~~v~ql~~~i~~Le~eL~e~r~ 61 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKT---ESQRVVLQLKGHVSELEADLAEQQH 61 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666654422 3344455777788888888887753
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.90 E-value=81 Score=31.11 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=3.8
Q ss_pred hhhhcHHHHH
Q 016680 293 KLRVQTDQWK 302 (384)
Q Consensus 293 RLRVQseQWR 302 (384)
+|+-+...|+
T Consensus 562 ~l~~e~~~~~ 571 (597)
T 3oja_B 562 ELRQETSLKR 571 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333443
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.32 E-value=59 Score=27.65 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=28.0
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
.+.+|+.|+++|...|.-|.....+...|+.+|..
T Consensus 22 ~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 22 ASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588889999988888888888888888877653
No 31
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.83 E-value=63 Score=26.85 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH-HHHHHHHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA-IQLKEKLEAAEGAK 284 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~-ar~~EqL~Aae~A~ 284 (384)
+.+.||..|-..+.++..+..+...|+..+.+.. ..-..+-..+.++..||+.-.+-- ....+-...+...+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~-------~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~ 78 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN-------ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEK 78 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766655432 222233334444555555443321 22222222333334
Q ss_pred HHHHHHHhhhhhc
Q 016680 285 KALEMEMKKLRVQ 297 (384)
Q Consensus 285 ~~lEaElrRLRVQ 297 (384)
..+|--.+.|+.|
T Consensus 79 ~~~e~kn~~L~~q 91 (97)
T 2eqb_B 79 YAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444455444
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.60 E-value=54 Score=26.42 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=37.0
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHh
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKA 304 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKA 304 (384)
.+.-.+..+..|+++-..+-..+.++...+..-++.|+.|..+|+-+-.+|..-
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555544555677777777777888999999999999999754
No 33
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.27 E-value=55 Score=25.64 Aligned_cols=69 Identities=23% Similarity=0.406 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 220 QLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 220 ELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
||+++-..|..|...|.++-.... ..-.++...++.++.++......-++.......-=-.|..||.|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 677777778888888776544322 334566677788888888776654544444444445677788776
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.49 E-value=83 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=19.0
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAK 95 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~K 95 (384)
.|.+.|+-.|..+..+|..++..+...|..+
T Consensus 13 n~qs~LeD~L~~~R~el~~~~~ri~~lE~~r 43 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIASQKAAIENYNQLK 43 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677666666666666666555555443
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.48 E-value=56 Score=28.06 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|.-.++......+.+++.+..|+..||.++-
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 36
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=60.48 E-value=1.1e+02 Score=31.88 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhh
Q 016680 210 LQNKLDEKEKQLEGMAQENKSLKKQLNEASSNIS 243 (384)
Q Consensus 210 LKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~ 243 (384)
-.++|-.-.+||..|...|+.++-.-+.+++++.
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~ 40 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANN 40 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777777777777777666655555443
No 37
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=60.45 E-value=32 Score=29.23 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+.-|+.+..+|++||..+..++..| +.++.|+-|+.
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~ 72 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQAD 72 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3447889999999999999988766 55677777753
No 38
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.66 E-value=47 Score=28.68 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=27.0
Q ss_pred hchhHHHHHHhhhhhhHHH----HHHHHHHhHHHHHHHHHhhhhhhhHHHH
Q 016680 202 LTKDEINLLQNKLDEKEKQ----LEGMAQENKSLKKQLNEASSNISTAQKE 248 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtE----Lq~l~~ENe~LK~ql~Ea~~~~~~A~~~ 248 (384)
.-+.-|.-|+++|..+-+. ++-+..|+..|+-+|.++..+++.-+..
T Consensus 50 TCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 50 TANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344556666666555444 6666666666666666666655544333
No 39
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.86 E-value=19 Score=28.60 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=27.1
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+|..-|..+..+|...-+.+-++|.+|+..-+++..|++++.
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666667776664
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.71 E-value=18 Score=26.73 Aligned_cols=33 Identities=39% Similarity=0.578 Sum_probs=24.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..||+.||..+.+.-.++..+.++|+.|+.+++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457777777777777777777777777777764
No 41
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=54.41 E-value=52 Score=26.70 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 217 KEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 217 KEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
.|+.|.++...|..|.++|.+.-.... ...++....+..++.++......-++.......-=-.|-.||.|+
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777778888887765533221 233455566777777777665533333222223334566677776
No 42
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.21 E-value=54 Score=30.00 Aligned_cols=29 Identities=10% Similarity=0.128 Sum_probs=14.5
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEG 223 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~ 223 (384)
++..+|.....++..+++.|..-+.+|..
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~ 94 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKL 94 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444443
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.80 E-value=20 Score=27.95 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=33.0
Q ss_pred hchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 202 LTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 202 ~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
.++..|.+|-.++.+.+...+.+..||..|+.+|.....++
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888889999999998887655543
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=51.33 E-value=21 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=30.2
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
++....||..|+.+|-|.+.+++.+..+|+.|...|-
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 4456678888888999999999999999988887764
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=51.32 E-value=1.1e+02 Score=32.22 Aligned_cols=88 Identities=19% Similarity=0.281 Sum_probs=41.9
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHH-HHHH---HHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEA-IQLK---EKLE 278 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~-ar~~---EqL~ 278 (384)
...-|++||.+|.|...- ..+...+-+++.+... ...+...+.....+++.+||++.-... ..|. .+|.
T Consensus 62 ltkrINELKnqLEdlsKn----sKdseqy~k~~~E~Lr---~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIr 134 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKN----NKDSHSLTTNIMEILR---GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQ 134 (562)
T ss_dssp HHHHHHHHHHHHTHHHHH----HHHHHHHHHHHHHTTS---SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHH---HHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888876333 3333333333332221 111122244446666666666552221 2222 3444
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 016680 279 AAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 279 Aae~A~~~lEaElrRLRVQ 297 (384)
+-|..=+.+=-+|+||=|-
T Consensus 135 vLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555566666553
No 46
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=50.86 E-value=38 Score=30.08 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016680 272 QLKEKLEAAEGAKKALEMEMKKLRVQ 297 (384)
Q Consensus 272 r~~EqL~Aae~A~~~lEaElrRLRVQ 297 (384)
-+...|+++.+++..+++++..|+..
T Consensus 70 ~l~rdleasr~akk~~ea~la~l~~~ 95 (146)
T 2xnx_M 70 AITREQEINRNLLGNAKLELDQLSSE 95 (146)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34455555555555555555555544
No 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.72 E-value=92 Score=27.18 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.|-...++|..+..+...|...+.
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~ 56 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIA 56 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333444444444444443
No 48
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=49.96 E-value=22 Score=25.01 Aligned_cols=27 Identities=26% Similarity=0.526 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhHHHH
Q 016680 206 EINLLQNKLDEKEKQLEGMAQENKSLK 232 (384)
Q Consensus 206 eI~eLKA~LmDKEtELq~l~~ENe~LK 232 (384)
|-+.|.-.|..|+.+++++..+|+.|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345677778888888888888888875
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.19 E-value=27 Score=30.57 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 016680 216 EKEKQLEGMAQENKSLKK 233 (384)
Q Consensus 216 DKEtELq~l~~ENe~LK~ 233 (384)
+-|.++..|..|-+.|--
T Consensus 64 ~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.76 E-value=78 Score=26.29 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=8.5
Q ss_pred HHHHHHhhhhhcH
Q 016680 286 ALEMEMKKLRVQT 298 (384)
Q Consensus 286 ~lEaElrRLRVQs 298 (384)
--|.||+-|+.|.
T Consensus 105 ~heeEl~eLq~qi 117 (119)
T 3ol1_A 105 LHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHh
Confidence 3466777777663
No 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=47.26 E-value=1.5e+02 Score=26.16 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=35.2
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHH--------------HHHHHHHhhhhhhhHHHHHHHHHHHhhhhhH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKS--------------LKKQLNEASSNISTAQKEKEEMTQSLNKLGE 261 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~--------------LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~e 261 (384)
++.+|.....-....-++..+.|.+|..+..--.. +..+|......+..|.+..+.+-..+..|..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665533222 3333444444444444444444444444444
Q ss_pred HHH
Q 016680 262 EVQ 264 (384)
Q Consensus 262 El~ 264 (384)
+++
T Consensus 106 ~id 108 (155)
T 2efr_A 106 SID 108 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 52
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=47.08 E-value=1e+02 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
++...++.++.+|......-++.......-=-.|..||.|+
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34445555666666554433333333333334566677776
No 53
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=46.22 E-value=65 Score=26.70 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=19.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
|..+..+|++||..+.-++..+ +.++.|+-|+
T Consensus 18 L~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv 49 (94)
T 3jsv_C 18 LVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQA 49 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 5566666777776655555444 4555665554
No 54
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.79 E-value=46 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=13.4
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEG 223 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~ 223 (384)
+..+|.....++..+++.|..-..+|..
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~ 95 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDV 95 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444333
No 55
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.01 E-value=27 Score=28.31 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=21.2
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQE 227 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~E 227 (384)
+..|+.++++|..|+-.|..||.|+..+..+
T Consensus 46 EkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 46 EWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4557777777777777777777777666543
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=39.97 E-value=45 Score=25.67 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=32.7
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|..+-..|..|.......+.++..+..+|..|+.+|.
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999999998875
No 57
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.76 E-value=56 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=12.5
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
++.+..++.+|..-..+|..+.++...|+.+
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444333
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.67 E-value=1.3e+02 Score=25.14 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=34.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEA 279 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~A 279 (384)
...-.+++...|..+.+.-..+|++..+.+.|+++-. .|+.-+..- ..+...++..
T Consensus 26 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~---------------------sLE~~l~e~---e~~~~~~l~~ 81 (131)
T 3tnu_A 26 VATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKA---------------------SLENSLEET---KGRYCMQLAQ 81 (131)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH---HHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---------------------HHHHHHHHH---HHHHHHHHHH
Confidence 3344455555566666666666666666666655521 111111111 1244455566
Q ss_pred HHHHHHHHHHHHhhhhhcHHH
Q 016680 280 AEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 280 ae~A~~~lEaElrRLRVQseQ 300 (384)
.+..-..||++|.++|....+
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666788888888876543
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.50 E-value=1.6e+02 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcHHH
Q 016680 272 QLKEKLEAAEGAKKALEMEMKKLRVQTDQ 300 (384)
Q Consensus 272 r~~EqL~Aae~A~~~lEaElrRLRVQseQ 300 (384)
+...++...+..-..||++|.++|....+
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555666666788888888776543
No 60
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=39.15 E-value=78 Score=32.45 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+.+.+.+.+.+..+-+.|+.+.|..+.+|..++...+ ++++-.++...+.+++.+.+..-.++|.+|
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~-----------~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE-----------DAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888999999998888887765443222 222223344567777776666666666666
Q ss_pred hh
Q 016680 292 KK 293 (384)
Q Consensus 292 rR 293 (384)
..
T Consensus 102 ~~ 103 (485)
T 3qne_A 102 RS 103 (485)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.80 E-value=22 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=27.9
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..||+.||.++.+.+.....|..||..||.-+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999764
No 62
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.15 E-value=43 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=22.1
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
++-+.+.|.++..|..+|..|..++.....
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888765543
No 63
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.00 E-value=1.8e+02 Score=29.77 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016680 213 KLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMK 292 (384)
Q Consensus 213 ~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElr 292 (384)
.+.+.+.+.+.+..+-+.|+.+.|..+.+|..++...... .+ ...++..+-.++...+.+++.+.+..-.+++.+|.
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~--~~-~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNS--QV-QQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT--TG-GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888877776544332100 00 00023333344556777888777777777777775
No 64
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.79 E-value=1.5e+02 Score=23.30 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=31.1
Q ss_pred cHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 196 SIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 196 l~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
...|+..++.++..|+.+|..-+....-+...+..|-.+.+.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~ 53 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKND 53 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999999999887777777777666666555443
No 65
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=36.19 E-value=1.3e+02 Score=24.93 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=53.8
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQ 264 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~ 264 (384)
.||....+-+..-+.-|-+++........|-..+--+|-+|-+..--++....++...+..|.+|+.
T Consensus 29 pEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 29 AELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999999999999999998888888766666666666666666666666654
No 66
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=36.13 E-value=61 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=30.9
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
|...=.|...|...+..++.|+..+..+|+.|+.-++.+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667788888888889999988888888888776543
No 67
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.86 E-value=58 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=22.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEAS 239 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~ 239 (384)
+|...|-.+...-|.|+..|..++..|+..+..+.
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555556666667777777777777777765543
No 68
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.58 E-value=30 Score=27.39 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=15.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 207 INLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 207 I~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
|-+|+.-|..|..||+.-.+-++.|..+|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 69
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=35.25 E-value=73 Score=23.09 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=23.9
Q ss_pred hhhchhHHHHHHh------hhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQN------KLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA------~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|+..++++.-||. .|...|+|||.+......||+.+.
T Consensus 2 laalkselqalkkegfspeelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 2 LAALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666653 466677777777777777776653
No 70
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.03 E-value=71 Score=32.09 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=45.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+.+.+.+.+.+..+-+.|+.+.|..+.+|..++... ++..+-.++...+.+++.+.+..-.+++.+|
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----------EPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888777776433321 1222233445567777776666666666666
Q ss_pred hh
Q 016680 292 KK 293 (384)
Q Consensus 292 rR 293 (384)
..
T Consensus 100 ~~ 101 (455)
T 2dq0_A 100 DY 101 (455)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 71
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.89 E-value=93 Score=24.39 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=32.1
Q ss_pred ccchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 63 LGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 63 ~~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
.-.||.+||.+|.-...-+-.+++.++.-...=.+-+..+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999888888888888877666665555554
No 72
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.56 E-value=1.9e+02 Score=29.55 Aligned_cols=12 Identities=17% Similarity=-0.033 Sum_probs=5.1
Q ss_pred HHHHHHhhhhhh
Q 016680 206 EINLLQNKLDEK 217 (384)
Q Consensus 206 eI~eLKA~LmDK 217 (384)
+.+.++.+|..+
T Consensus 49 n~~~v~~~l~~R 60 (501)
T 1wle_A 49 YPEDAARALDLR 60 (501)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 344444444433
No 73
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=34.32 E-value=1.5e+02 Score=24.98 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=37.5
Q ss_pred hhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Q 016680 201 TLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQA 265 (384)
Q Consensus 201 ~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~ 265 (384)
...-=+|+-||-+|+|.|-.+..+..++.....+++.--.. -..+...+..+.+.|.+
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~-------~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHA-------HSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34445789999999999998888888888777765533322 22333344445555554
No 74
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.14 E-value=1.5e+02 Score=23.86 Aligned_cols=86 Identities=15% Similarity=0.277 Sum_probs=48.3
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHH-HHHHHHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAE-AIQLKEKLEAAEG 282 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r-~ar~~EqL~Aae~ 282 (384)
..++..|-+.|..+=..+..+.- +.=+..|.++ ...-+|+..=|.+|..|+...-.. -..+..+|+.-..
T Consensus 11 E~df~~l~~~i~~kl~~i~~~~g--eerk~~i~~i-------e~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRLPP--DEKKQMVANV-------EKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCT--TTHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCc--HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHH
Confidence 44555555555555554444311 2222333333 333444444556667776654211 1467778887766
Q ss_pred HHHHHHHHHhhhhhcH
Q 016680 283 AKKALEMEMKKLRVQT 298 (384)
Q Consensus 283 A~~~lEaElrRLRVQs 298 (384)
-=..|..|++++++++
T Consensus 82 dL~~lk~elk~~~~~~ 97 (102)
T 1vcs_A 82 EMGKLETDFKRSRIAS 97 (102)
T ss_dssp HHHHHHHHTHHHHTCC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6667899999999873
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.92 E-value=1.7e+02 Score=28.25 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=22.0
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHH
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEE 251 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e 251 (384)
+......-.+.+.+-++|+.|+..|.+....+..|++.-++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 33333334455566666666666666665555544444444
No 76
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.79 E-value=27 Score=27.24 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=25.2
Q ss_pred hcccchhhHhhHHHhHHHHHHHHHHHHHH
Q 016680 61 KKLGTRIADLESQLGQAQEELKNLKDQLA 89 (384)
Q Consensus 61 kk~~~r~seLesql~qaqedLKk~keQLa 89 (384)
+.+..||.+||..|++..+++..++.+|-
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667999999999999999999998874
No 77
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.80 E-value=1.8e+02 Score=22.90 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=24.1
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
.+..++...+..+.......-+.|.....+.++...|..+
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666655566666666666666666666655
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=32.52 E-value=2.8e+02 Score=24.96 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=55.5
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHH-------
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQ------- 272 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar------- 272 (384)
+.....-+.+|..++--.++..-.+..++..|..++..--..-.-+..--.++..++..|..|++....+..+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555556666666666666666665322222222223346667888889998888766544
Q ss_pred HHHHHHHHHHHHHHHH----HHHhhhh
Q 016680 273 LKEKLEAAEGAKKALE----MEMKKLR 295 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lE----aElrRLR 295 (384)
+.|++-.-|--+..|| =||+-|.
T Consensus 123 L~Ekl~~lEKe~a~~eid~~~eLKalQ 149 (168)
T 3o0z_A 123 AQDMLNHSEKEKNNLEIDLNYKLKSLQ 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4466666666666666 4455443
No 79
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.91 E-value=2.7e+02 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 016680 273 LKEKLEAAEGAKKALEMEMKKLR 295 (384)
Q Consensus 273 ~~EqL~Aae~A~~~lEaElrRLR 295 (384)
+.++|.-.+.-=.-|...|..|+
T Consensus 120 L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555554
No 80
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.69 E-value=2e+02 Score=22.99 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=12.0
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~q 234 (384)
.+.+..+.+++-+.+....-+.++...|+..
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kK 52 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKK 52 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334444444433333333333333333333
No 81
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.42 E-value=76 Score=31.43 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=47.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+.+.+.+...+..+-+.|+.+.|..+.+|..++... ++..+-.++...+.+++.+.+..-.+++.+|
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG-----------KDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC-----------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888776544322 1222223445567777777666666677666
Q ss_pred hh
Q 016680 292 KK 293 (384)
Q Consensus 292 rR 293 (384)
..
T Consensus 99 ~~ 100 (425)
T 2dq3_A 99 KN 100 (425)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 82
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.26 E-value=82 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
|.++-+.|..|.........++..+..+|..|+.+|.+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999888888889999999999998764
No 83
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=29.98 E-value=47 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=25.0
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHh
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQEN 228 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~EN 228 (384)
.||...=.|-++||++|++.+-||+...-++
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566666788999999999999999876554
No 84
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.61 E-value=83 Score=24.58 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=33.2
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
.=|.++-+.|..|...-.....+.+.+..+|+.|+.+|.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347788889999999988888888999999999988875
No 85
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.49 E-value=2.2e+02 Score=28.09 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=43.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+.+.+.+...+..+-+.|+.+.|..+.+|.. +.. ++..+-.++...+.+++.+.+..-.+++.+|
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPK-APP------------EEKEALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888888888888888777764 111 1222233444566777766666666666666
Q ss_pred hh
Q 016680 292 KK 293 (384)
Q Consensus 292 rR 293 (384)
..
T Consensus 95 ~~ 96 (421)
T 1ses_A 95 EA 96 (421)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 86
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.04 E-value=72 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=20.5
Q ss_pred HhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 211 QNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 211 KA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
++.+.+.|.++..|..+|..|..++...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777888888888888876543
No 87
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.01 E-value=1e+02 Score=22.41 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhHHHHHH
Q 016680 217 KEKQLEGMAQENKSLKKQ 234 (384)
Q Consensus 217 KEtELq~l~~ENe~LK~q 234 (384)
.|+|+.++..||+.||+.
T Consensus 8 lenevaslenenetlkkk 25 (49)
T 3he5_A 8 LENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHh
Confidence 467888888888888765
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.45 E-value=1.1e+02 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..+.|.+...+..+|..|..+|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544
No 89
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.39 E-value=2.4e+02 Score=22.65 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=13.1
Q ss_pred HHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhH
Q 016680 197 IHELTLTKDEINLLQNKLDEKEKQLEGMAQENK 229 (384)
Q Consensus 197 ~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe 229 (384)
..+|.....+=..|...|...|++-..|..+.+
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444444443333333333333
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.10 E-value=1.3e+02 Score=22.51 Aligned_cols=27 Identities=11% Similarity=0.259 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
....+.+.+++.+..+|..|+.+|...
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666665443
No 91
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.82 E-value=1.5e+02 Score=22.11 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=18.5
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
..++..|...=.+.+.++..+..|+..|+..|-
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444445555556666666666666554
No 92
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.61 E-value=2.3e+02 Score=27.98 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=6.3
Q ss_pred hHHHHHHhhhhhh
Q 016680 205 DEINLLQNKLDEK 217 (384)
Q Consensus 205 ~eI~eLKA~LmDK 217 (384)
.+.+.++++|-.+
T Consensus 9 ~~~~~~~~~~~~r 21 (421)
T 1ses_A 9 QEPEVFHRAIREK 21 (421)
T ss_dssp HCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHh
Confidence 3444555555444
No 93
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.46 E-value=2.6e+02 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=12.0
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 210 LQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 210 LKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
+...|...+.+|+.+..+....+.++.
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~ 94 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYD 94 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445444444444444443
No 94
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=25.99 E-value=2.6e+02 Score=22.46 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHH---HHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016680 218 EKQLEGMAQENKSLKK---QLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKL 294 (384)
Q Consensus 218 EtELq~l~~ENe~LK~---ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRL 294 (384)
-.|+++|..||..|.- .|+=+-- .-=+.-+++..+-..+.+|+.....-..|+.+++ .+||.||+|+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~---DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri-------~elEeElkr~ 77 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKN---DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN-------RELEEELRKA 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcC
Confidence 4567778888877732 2221100 0012223444444445555554433233333333 3577777764
No 95
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.59 E-value=3.4e+02 Score=23.85 Aligned_cols=7 Identities=43% Similarity=0.743 Sum_probs=3.2
Q ss_pred CCccccc
Q 016680 319 NGRIPER 325 (384)
Q Consensus 319 nGk~~eR 325 (384)
+|.|..+
T Consensus 138 ~G~V~~~ 144 (277)
T 2f1m_A 138 SGRIGKS 144 (277)
T ss_dssp CEEECCC
T ss_pred CeEEEeE
Confidence 4555443
No 96
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.47 E-value=2.2e+02 Score=23.66 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=31.7
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
...++..|+.++...+.|-..|..+++.|..+|+.
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999974
No 97
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.30 E-value=2.8e+02 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQK 247 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~ 247 (384)
..+.+.+.+.+.+..+-+.|+.+.|..+.+|..++.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667888888888888898888888888865544
No 98
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.81 E-value=1e+02 Score=25.05 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=29.2
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
|...=.|-..|...+..|+.|+..+.++|..|+--+..
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677788888888888888888888888776554
No 99
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.69 E-value=1e+02 Score=22.72 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=18.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
..+.+.|.++..+..+|..|+.++..-
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777888887776543
No 100
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.62 E-value=67 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=27.8
Q ss_pred cccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHH
Q 016680 194 KVSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSLK 232 (384)
Q Consensus 194 ~el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK 232 (384)
.++...|..++..|.+|-..|-+|+.+++.+..+.-.+.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778889999999998888888888776655444443
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.45 E-value=1.4e+02 Score=27.58 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=28.7
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 70 LESQLGQAQEELKNLKDQLASAEAAKKEAQEKLEK 104 (384)
Q Consensus 70 Lesql~qaqedLKk~keQLa~aE~~Kk~A~~el~K 104 (384)
|-.||...+.+++.+++||++++..-+.-++.+.|
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 34488888899999999999999988887777753
No 102
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.39 E-value=3.7e+02 Score=23.82 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=19.7
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
++..|..|++.+.+.-.+|.-..+|-+..-+.|.
T Consensus 9 K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~ 42 (167)
T 4gkw_A 9 KEDEVADLKQDTESLQKQLEENQEELEIVGNMLR 42 (167)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555555544443
No 103
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=24.34 E-value=35 Score=29.03 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
+.+..++|+.|.-||..||++|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999974
No 104
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=23.80 E-value=32 Score=27.40 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=11.9
Q ss_pred hhcHHHHHHhHHHH
Q 016680 295 RVQTDQWKKAADAA 308 (384)
Q Consensus 295 RVQseQWRKAAEaA 308 (384)
.+|++||++--+|-
T Consensus 30 ~~Q~~QW~~TIeav 43 (75)
T 2fqm_A 30 GEQKSQWMLTIKAV 43 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999988864
No 105
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.71 E-value=64 Score=24.32 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=20.0
Q ss_pred HhhhhchhHHHHHHhhhhhhHHHHHHH
Q 016680 198 HELTLTKDEINLLQNKLDEKEKQLEGM 224 (384)
Q Consensus 198 ~EL~~~~~eI~eLKA~LmDKEtELq~l 224 (384)
.+|...+.||.+|+-.+-..+.||+++
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677788888888777777777765
No 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.66 E-value=3.1e+02 Score=22.60 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcHHHHHHhHH
Q 016680 271 IQLKEKLEAAEGAKKALEMEMKKLRVQTDQWKKAAD 306 (384)
Q Consensus 271 ar~~EqL~Aae~A~~~lEaElrRLRVQseQWRKAAE 306 (384)
..+...++.+-.++..||+.+.-|+-...=-++-=+
T Consensus 72 ~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 72 QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777778888888888777766655555433
No 107
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.43 E-value=1.5e+02 Score=24.11 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.6
Q ss_pred cchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 64 GTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQE 100 (384)
Q Consensus 64 ~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~ 100 (384)
-.|+..|+.++..+++++..+++|+...+..=.+.+.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3488888888888888888888888877766555543
No 108
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=23.17 E-value=2.1e+02 Score=24.27 Aligned_cols=46 Identities=37% Similarity=0.455 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhhcHHHHHHhHHHHHHHHccC
Q 016680 270 AIQLKEKLEAAEGAKK-ALEMEMKKLRVQTDQWKKAADAAASILAGG 315 (384)
Q Consensus 270 ~ar~~EqL~Aae~A~~-~lEaElrRLRVQseQWRKAAEaAaAvLs~g 315 (384)
...+.++|+.++.|.. +-..+..-|..=..-||.|+-.||-.|=.+
T Consensus 16 i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~ 62 (122)
T 3viq_A 16 VRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKP 62 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655555443 222222233444899999999999888654
No 109
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.81 E-value=2.7e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016680 251 EMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKL 294 (384)
Q Consensus 251 e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRL 294 (384)
++..||..++.+=..-..++-.+-.+|+.++.-...+.+|++++
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 110
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.18 E-value=1.2e+02 Score=28.35 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=32.1
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEA 238 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea 238 (384)
|...=.|...|...+..++.|+..+.++|+.|+.-++.+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566788899999999999999999999998877654
No 111
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.92 E-value=1.4e+02 Score=27.95 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=31.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
.-++.+|++|...+..|+.+.+|+..+..+|.+.-.
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~ 206 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQ 206 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999876533
No 112
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.88 E-value=1.8e+02 Score=21.01 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=22.3
Q ss_pred chhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 203 TKDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 203 ~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
....+.+|-.+.-+.|..+--|..||.+|..-+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344555666666666777777888888887654
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.21 E-value=1.1e+02 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.1
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAE 92 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE 92 (384)
..+.+||.++.+++.+...++.||....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999987654
No 114
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.89 E-value=1.1e+02 Score=24.51 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=32.1
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhh
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASS 240 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~ 240 (384)
|...=.|-..|...+..|+.++..+.++|..|+.-+.++-.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888999999999999999999887776533
No 115
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=20.82 E-value=1.6e+02 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQL 235 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql 235 (384)
..++..|...-.+...++..+..|+..|+..|
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666666677777777776654
No 116
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.81 E-value=1.4e+02 Score=29.57 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=35.5
Q ss_pred chhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 65 TRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 65 ~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
-++.+|+.++.+++.+++.+++||...+..+++...++.
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999998887
No 117
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.75 E-value=2.5e+02 Score=25.47 Aligned_cols=36 Identities=6% Similarity=0.169 Sum_probs=15.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016680 261 EEVQASKAEAIQLKEKLEAAEGAKKALEMEMKKLRV 296 (384)
Q Consensus 261 eEl~~s~~r~ar~~EqL~Aae~A~~~lEaElrRLRV 296 (384)
.+++...........+|.++++.-..+++.|..++.
T Consensus 114 ~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 114 QDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333334444444444444444444443
No 118
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.39 E-value=1.8e+02 Score=23.16 Aligned_cols=37 Identities=27% Similarity=0.241 Sum_probs=24.0
Q ss_pred ccHHhhhhchhHHHHHHhhhhhhHHHHHHHHHHhHHH
Q 016680 195 VSIHELTLTKDEINLLQNKLDEKEKQLEGMAQENKSL 231 (384)
Q Consensus 195 el~~EL~~~~~eI~eLKA~LmDKEtELq~l~~ENe~L 231 (384)
-|+.+|..++.+|..|+.-+--|-+....+-+|.=.|
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 3677777777777777777666665555555544333
No 119
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.18 E-value=4.7e+02 Score=23.44 Aligned_cols=92 Identities=24% Similarity=0.312 Sum_probs=52.8
Q ss_pred hHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHH-----
Q 016680 205 DEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEA----- 279 (384)
Q Consensus 205 ~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~A----- 279 (384)
+-|..|--.|.+.-.-|+.-++-...|+++..|..-.+..+...-+|+..++..+.-..+.-..-.+.|-.+|+.
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666777777777777777777666666666666666666655555544444444444444432
Q ss_pred ---------HHHHHHHHHHHHhhhhh
Q 016680 280 ---------AEGAKKALEMEMKKLRV 296 (384)
Q Consensus 280 ---------ae~A~~~lEaElrRLRV 296 (384)
.+.=...|..||.|+|.
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333457777777764
Done!