Query 016680
Match_columns 384
No_of_seqs 70 out of 72
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 17:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fqma1 d.378.1.1 (A:107-171) 37.5 6.4 0.00047 28.8 1.6 14 295-308 26-39 (65)
2 d1nlwa_ a.38.1.1 (A:) Mad prot 35.5 24 0.0017 25.1 4.6 37 200-236 42-78 (79)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 34.4 29 0.0021 25.1 5.0 37 200-236 47-83 (88)
4 d1seta1 a.2.7.1 (A:1-110) Sery 33.1 86 0.0063 23.1 9.1 70 212-294 28-97 (110)
5 d1nkpb_ a.38.1.1 (B:) Max prot 30.8 36 0.0027 24.2 5.0 37 200-236 42-78 (83)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.1 46 0.0034 25.1 5.8 39 63-101 93-131 (133)
7 d2oa5a1 d.362.1.1 (A:7-102) Un 26.9 14 0.001 28.8 2.1 24 214-237 4-27 (96)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 19.7 1.6E+02 0.012 21.5 8.7 37 67-103 3-39 (107)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 17.4 86 0.0063 24.6 5.1 39 204-242 90-128 (129)
10 d2ap3a1 a.24.27.1 (A:12-196) H 15.1 1.8E+02 0.013 20.2 9.7 25 208-232 112-136 (185)
No 1
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=37.55 E-value=6.4 Score=28.83 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=11.9
Q ss_pred hhcHHHHHHhHHHH
Q 016680 295 RVQTDQWKKAADAA 308 (384)
Q Consensus 295 RVQseQWRKAAEaA 308 (384)
.||++||+|--+|-
T Consensus 26 ~~Q~~QW~~TIeav 39 (65)
T d2fqma1 26 GEQKSQWMLTIKAV 39 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 58999999988863
No 2
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.55 E-value=24 Score=25.06 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.3
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|..+-..|..|+..+-..+.++..+..++..|+.+|+
T Consensus 42 L~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778889999999998889999999999999988875
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.37 E-value=29 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=31.1
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|..+-..|..|+..+-....++..+..+|..|..++.
T Consensus 47 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999888888888888888888888764
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=33.08 E-value=86 Score=23.07 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=41.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhHHHHHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 212 NKLDEKEKQLEGMAQENKSLKKQLNEASSNISTAQKEKEEMTQSLNKLGEEVQASKAEAIQLKEKLEAAEGAKKALEMEM 291 (384)
Q Consensus 212 A~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~~~A~~~e~e~~~kl~~~~eEl~~s~~r~ar~~EqL~Aae~A~~~lEaEl 291 (384)
..+...+.+...+..+-+.|+.+-+..+.+|..++....+ +-.+....+.+++...+..-.+++.++
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~-------------~l~~~~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKE-------------ALIARGKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888888888777644322211 111222345555555555555556555
Q ss_pred hhh
Q 016680 292 KKL 294 (384)
Q Consensus 292 rRL 294 (384)
..+
T Consensus 95 ~~~ 97 (110)
T d1seta1 95 EAL 97 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.84 E-value=36 Score=24.25 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=31.0
Q ss_pred hhhchhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 016680 200 LTLTKDEINLLQNKLDEKEKQLEGMAQENKSLKKQLN 236 (384)
Q Consensus 200 L~~~~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~ 236 (384)
|..+-..|..|+..+-+.+.++..+..+|..|..+|.
T Consensus 42 L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888899999998888864
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.08 E-value=46 Score=25.15 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=31.8
Q ss_pred ccchhhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 63 LGTRIADLESQLGQAQEELKNLKDQLASAEAAKKEAQEK 101 (384)
Q Consensus 63 ~~~r~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~e 101 (384)
...|+.+|+.++..++.+++++++++...+..=.+.++.
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a 131 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999998887766665544
No 7
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=26.92 E-value=14 Score=28.81 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 016680 214 LDEKEKQLEGMAQENKSLKKQLNE 237 (384)
Q Consensus 214 LmDKEtELq~l~~ENe~LK~ql~E 237 (384)
+.+..++|+.|.-||..||+++..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999999975
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=19.69 E-value=1.6e+02 Score=21.55 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=30.9
Q ss_pred hhHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016680 67 IADLESQLGQAQEELKNLKDQLASAEAAKKEAQEKLE 103 (384)
Q Consensus 67 ~seLesql~qaqedLKk~keQLa~aE~~Kk~A~~el~ 103 (384)
+-++-.++.++|.+|..+..|+...+....++.--++
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~ 39 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999998887766654
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.41 E-value=86 Score=24.61 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=33.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhhhhh
Q 016680 204 KDEINLLQNKLDEKEKQLEGMAQENKSLKKQLNEASSNI 242 (384)
Q Consensus 204 ~~eI~eLKA~LmDKEtELq~l~~ENe~LK~ql~Ea~~~~ 242 (384)
..-|.+|-..+-..+.+|+.+..+.+.|-.++..+.++|
T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356888889999999999999999999999998877654
No 10
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=15.06 E-value=1.8e+02 Score=20.25 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=9.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHH
Q 016680 208 NLLQNKLDEKEKQLEGMAQENKSLK 232 (384)
Q Consensus 208 ~eLKA~LmDKEtELq~l~~ENe~LK 232 (384)
..+...+......++.+......+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (185)
T d2ap3a1 112 KEKYKLHSDYAKAYKKAVNSEKTLF 136 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333333333333333333333333
Done!