Query 016681
Match_columns 384
No_of_seqs 708 out of 1439
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 09:02:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.1E-66 1.1E-70 476.3 48.7 382 2-383 451-857 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9.4E-66 2E-70 474.5 49.3 380 2-381 384-797 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.7E-59 8E-64 427.7 39.6 370 2-383 101-472 (697)
4 PLN03081 pentatricopeptide (PP 100.0 4.2E-58 9E-63 420.8 36.1 364 2-380 137-501 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-57 2.5E-62 427.4 37.7 367 2-380 267-664 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1E-56 2.2E-61 421.0 39.2 374 2-383 166-635 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-26 3.4E-31 221.7 46.3 356 1-368 512-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-26 7E-31 219.6 45.9 352 2-365 547-898 (899)
9 PRK11788 tetratricopeptide rep 100.0 8.6E-25 1.9E-29 189.1 35.4 306 66-378 43-358 (389)
10 PRK11788 tetratricopeptide rep 99.9 2.3E-23 5E-28 180.2 35.2 303 30-339 42-354 (389)
11 TIGR00990 3a0801s09 mitochondr 99.9 4.4E-21 9.6E-26 174.4 46.2 359 1-367 140-571 (615)
12 PRK15174 Vi polysaccharide exp 99.9 3.4E-21 7.4E-26 174.7 42.2 333 26-367 45-381 (656)
13 PRK15174 Vi polysaccharide exp 99.9 4.5E-21 9.9E-26 173.9 42.1 323 2-334 56-383 (656)
14 PRK11447 cellulose synthase su 99.9 1.1E-20 2.4E-25 182.6 46.3 365 1-372 282-746 (1157)
15 KOG4626 O-linked N-acetylgluco 99.9 2.7E-21 5.9E-26 161.9 29.1 364 2-380 130-497 (966)
16 PRK10049 pgaA outer membrane p 99.9 1.3E-18 2.8E-23 161.3 45.2 359 1-367 28-456 (765)
17 PRK11447 cellulose synthase su 99.9 1.8E-18 3.8E-23 167.6 47.2 359 2-367 161-700 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-18 3E-23 158.2 43.6 340 25-373 129-541 (615)
19 KOG4626 O-linked N-acetylgluco 99.9 2.3E-19 5E-24 150.5 27.8 335 22-366 115-450 (966)
20 PRK10049 pgaA outer membrane p 99.9 1.6E-16 3.4E-21 147.5 44.4 345 20-373 12-426 (765)
21 PRK14574 hmsH outer membrane p 99.9 2.1E-16 4.6E-21 144.3 43.7 364 1-373 47-483 (822)
22 KOG4422 Uncharacterized conser 99.8 2.4E-16 5.2E-21 127.0 35.4 293 2-298 129-463 (625)
23 KOG2076 RNA polymerase III tra 99.8 4.3E-15 9.4E-20 130.2 38.6 361 1-366 152-554 (895)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.6E-19 133.1 42.2 337 23-367 34-445 (822)
25 PRK09782 bacteriophage N4 rece 99.8 1.7E-14 3.7E-19 134.7 43.5 350 3-365 357-738 (987)
26 PRK10747 putative protoheme IX 99.8 4.1E-15 8.9E-20 127.7 35.0 283 36-331 97-389 (398)
27 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.5E-19 117.5 34.4 345 20-370 204-593 (625)
28 TIGR00540 hemY_coli hemY prote 99.8 3.8E-15 8.2E-20 128.6 33.9 294 69-366 95-398 (409)
29 TIGR00540 hemY_coli hemY prote 99.8 5E-15 1.1E-19 127.9 33.9 293 34-331 95-398 (409)
30 PRK10747 putative protoheme IX 99.8 1E-14 2.2E-19 125.2 34.9 285 71-366 97-389 (398)
31 PF13429 TPR_15: Tetratricopep 99.8 8.4E-18 1.8E-22 138.1 13.7 261 98-365 13-275 (280)
32 PRK09782 bacteriophage N4 rece 99.8 1.9E-13 4E-18 127.9 43.2 323 35-368 354-707 (987)
33 KOG2076 RNA polymerase III tra 99.8 5.8E-14 1.3E-18 123.3 37.0 339 22-365 138-510 (895)
34 PF13429 TPR_15: Tetratricopep 99.8 1.1E-17 2.5E-22 137.3 13.5 259 29-294 14-274 (280)
35 KOG2002 TPR-containing nuclear 99.8 2.7E-14 5.8E-19 126.3 34.5 119 247-367 626-745 (1018)
36 COG3071 HemY Uncharacterized e 99.7 9.1E-14 2E-18 111.4 33.0 287 35-331 96-389 (400)
37 COG2956 Predicted N-acetylgluc 99.7 6E-14 1.3E-18 109.2 30.2 300 71-377 48-357 (389)
38 KOG1155 Anaphase-promoting com 99.7 2.5E-13 5.3E-18 110.9 32.8 292 67-366 236-535 (559)
39 COG3071 HemY Uncharacterized e 99.7 3.6E-13 7.7E-18 108.1 33.1 293 70-372 96-395 (400)
40 KOG1126 DNA-binding cell divis 99.7 9.8E-15 2.1E-19 124.1 24.8 288 73-371 334-624 (638)
41 KOG2002 TPR-containing nuclear 99.7 2.5E-13 5.5E-18 120.3 33.1 213 158-372 447-714 (1018)
42 COG2956 Predicted N-acetylgluc 99.7 4.5E-13 9.8E-18 104.5 30.0 291 35-332 47-347 (389)
43 KOG1126 DNA-binding cell divis 99.7 3.7E-14 8E-19 120.7 25.4 288 38-336 334-624 (638)
44 KOG0495 HAT repeat protein [RN 99.7 1.6E-11 3.5E-16 104.7 39.9 354 4-366 422-781 (913)
45 KOG0495 HAT repeat protein [RN 99.7 9.1E-12 2E-16 106.2 37.8 332 22-367 549-880 (913)
46 KOG1915 Cell cycle control pro 99.7 9.5E-12 2.1E-16 102.2 36.6 357 2-367 87-536 (677)
47 KOG1915 Cell cycle control pro 99.7 1.9E-11 4.2E-16 100.5 37.4 336 1-347 154-549 (677)
48 KOG2003 TPR repeat-containing 99.7 2.4E-13 5.2E-18 110.9 25.5 186 175-366 502-688 (840)
49 KOG0547 Translocase of outer m 99.7 3.4E-12 7.3E-17 105.1 31.7 354 2-365 129-564 (606)
50 KOG1155 Anaphase-promoting com 99.6 1.8E-11 3.9E-16 100.3 34.1 258 100-366 234-494 (559)
51 KOG0547 Translocase of outer m 99.6 3.7E-11 7.9E-16 99.2 31.9 224 102-331 335-565 (606)
52 PRK12370 invasion protein regu 99.6 1.1E-11 2.3E-16 111.4 30.5 268 91-368 254-536 (553)
53 PRK12370 invasion protein regu 99.6 5.1E-12 1.1E-16 113.4 28.4 268 20-298 253-536 (553)
54 KOG1173 Anaphase-promoting com 99.6 8.4E-11 1.8E-15 98.8 31.0 278 90-375 241-524 (611)
55 TIGR02521 type_IV_pilW type IV 99.6 1.9E-11 4.1E-16 98.1 26.4 200 58-261 31-231 (234)
56 TIGR02521 type_IV_pilW type IV 99.5 2.4E-11 5.2E-16 97.4 26.3 202 91-296 29-231 (234)
57 KOG4318 Bicoid mRNA stability 99.5 8.7E-12 1.9E-16 109.8 23.6 272 9-317 11-285 (1088)
58 PF12569 NARP1: NMDA receptor- 99.5 3.7E-10 8.1E-15 98.4 33.7 291 31-330 12-332 (517)
59 KOG4318 Bicoid mRNA stability 99.5 4.5E-12 9.7E-17 111.5 21.4 275 44-353 11-286 (1088)
60 PF12569 NARP1: NMDA receptor- 99.5 3.4E-10 7.4E-15 98.6 32.7 294 64-366 10-333 (517)
61 KOG1129 TPR repeat-containing 99.5 9.7E-12 2.1E-16 97.4 20.5 233 128-367 223-458 (478)
62 KOG1129 TPR repeat-containing 99.5 5.5E-12 1.2E-16 98.7 18.6 230 62-297 227-458 (478)
63 KOG2003 TPR repeat-containing 99.5 5.5E-11 1.2E-15 97.4 25.0 277 68-352 429-708 (840)
64 KOG1156 N-terminal acetyltrans 99.5 3.7E-09 8.1E-14 90.6 35.0 353 1-369 54-470 (700)
65 KOG1173 Anaphase-promoting com 99.5 7.2E-10 1.6E-14 93.3 30.1 285 57-349 243-533 (611)
66 PF13041 PPR_2: PPR repeat fam 99.4 5E-13 1.1E-17 77.6 6.3 49 266-314 1-49 (50)
67 KOG1840 Kinesin light chain [C 99.4 7.2E-10 1.6E-14 95.6 26.9 239 127-365 198-477 (508)
68 PF13041 PPR_2: PPR repeat fam 99.4 7.5E-13 1.6E-17 76.8 6.2 50 21-70 1-50 (50)
69 KOG2047 mRNA splicing factor [ 99.4 5.7E-08 1.2E-12 83.5 35.8 193 177-372 361-583 (835)
70 KOG1156 N-terminal acetyltrans 99.4 3.1E-08 6.8E-13 85.1 34.2 355 2-368 21-435 (700)
71 KOG1174 Anaphase-promoting com 99.4 6.9E-09 1.5E-13 84.3 28.6 300 59-367 195-500 (564)
72 KOG4162 Predicted calmodulin-b 99.4 1E-07 2.2E-12 83.7 36.9 361 2-367 337-783 (799)
73 PRK11189 lipoprotein NlpI; Pro 99.3 4.5E-09 9.8E-14 86.7 26.8 96 60-157 66-161 (296)
74 cd05804 StaR_like StaR_like; a 99.3 4.9E-08 1.1E-12 83.6 34.1 60 308-367 269-336 (355)
75 KOG1840 Kinesin light chain [C 99.3 2.8E-09 6E-14 92.0 25.8 236 60-295 201-477 (508)
76 cd05804 StaR_like StaR_like; a 99.3 5.8E-08 1.3E-12 83.2 34.3 305 22-331 5-335 (355)
77 KOG3785 Uncharacterized conser 99.3 2.3E-08 5.1E-13 79.8 28.7 157 215-377 340-498 (557)
78 COG3063 PilF Tfp pilus assembl 99.3 4.3E-09 9.2E-14 78.9 22.9 193 28-224 40-233 (250)
79 COG3063 PilF Tfp pilus assembl 99.3 9.1E-09 2E-13 77.2 24.5 195 61-259 38-233 (250)
80 PRK11189 lipoprotein NlpI; Pro 99.3 5.8E-09 1.3E-13 86.1 26.2 218 3-229 41-267 (296)
81 KOG1174 Anaphase-promoting com 99.3 4.9E-08 1.1E-12 79.5 29.9 291 36-335 209-503 (564)
82 PRK04841 transcriptional regul 99.2 4E-07 8.7E-12 88.1 35.6 336 33-368 384-761 (903)
83 KOG2047 mRNA splicing factor [ 99.2 1.4E-06 3E-11 75.3 33.7 339 23-370 102-509 (835)
84 KOG2376 Signal recognition par 99.2 1.9E-06 4.1E-11 73.7 35.7 185 2-193 26-254 (652)
85 KOG1914 mRNA cleavage and poly 99.2 1.8E-06 3.9E-11 73.1 33.9 151 214-366 347-500 (656)
86 PF04733 Coatomer_E: Coatomer 99.2 2.5E-09 5.5E-14 86.9 15.9 250 67-332 10-265 (290)
87 KOG4340 Uncharacterized conser 99.2 9E-08 2E-12 74.7 23.3 92 26-120 13-105 (459)
88 KOG0548 Molecular co-chaperone 99.1 9.4E-07 2E-11 74.7 30.4 98 2-103 16-114 (539)
89 KOG3785 Uncharacterized conser 99.1 8.6E-07 1.9E-11 71.1 28.2 87 276-364 367-454 (557)
90 KOG2376 Signal recognition par 99.1 1.9E-06 4E-11 73.8 31.8 343 26-379 15-498 (652)
91 KOG0624 dsRNA-activated protei 99.1 1.6E-06 3.5E-11 69.3 29.6 300 22-332 37-370 (504)
92 KOG1125 TPR repeat-containing 99.1 4.4E-08 9.5E-13 83.2 21.9 85 34-120 296-380 (579)
93 PF04733 Coatomer_E: Coatomer 99.1 9.8E-09 2.1E-13 83.5 17.4 252 30-297 8-265 (290)
94 KOG4162 Predicted calmodulin-b 99.1 3.8E-06 8.3E-11 74.2 33.3 354 11-368 311-750 (799)
95 PLN02789 farnesyltranstransfer 99.1 5.7E-07 1.2E-11 74.3 27.2 214 26-245 40-267 (320)
96 KOG1070 rRNA processing protei 99.1 4E-07 8.8E-12 85.0 27.1 230 58-293 1458-1696(1710)
97 PLN02789 farnesyltranstransfer 99.1 1E-06 2.2E-11 72.9 27.3 212 62-279 41-266 (320)
98 KOG4340 Uncharacterized conser 99.1 1.4E-07 3E-12 73.7 20.1 194 60-263 12-208 (459)
99 KOG1125 TPR repeat-containing 99.0 1.7E-07 3.8E-12 79.6 22.2 252 102-360 294-564 (579)
100 PRK04841 transcriptional regul 99.0 2.3E-06 4.9E-11 83.0 33.1 307 26-332 412-760 (903)
101 KOG0624 dsRNA-activated protei 99.0 4.8E-06 1E-10 66.7 30.6 286 2-298 52-371 (504)
102 KOG1070 rRNA processing protei 99.0 9.6E-07 2.1E-11 82.7 27.0 227 90-321 1455-1689(1710)
103 KOG0548 Molecular co-chaperone 99.0 2.9E-06 6.2E-11 71.9 26.2 330 31-368 10-456 (539)
104 KOG1128 Uncharacterized conser 99.0 7E-07 1.5E-11 78.2 23.1 219 128-367 398-616 (777)
105 PRK14720 transcript cleavage f 98.9 2.7E-06 5.8E-11 78.6 26.3 237 22-314 30-268 (906)
106 KOG3617 WD40 and TPR repeat-co 98.9 4.8E-06 1E-10 74.2 26.2 312 2-364 742-1106(1416)
107 PRK10370 formate-dependent nit 98.9 1.6E-06 3.5E-11 66.8 20.3 154 31-200 24-180 (198)
108 TIGR03302 OM_YfiO outer membra 98.9 1.2E-06 2.6E-11 70.2 20.5 186 57-262 32-232 (235)
109 PF12854 PPR_1: PPR repeat 98.9 4.1E-09 8.9E-14 54.8 3.8 29 300-328 4-32 (34)
110 TIGR03302 OM_YfiO outer membra 98.9 1.8E-06 3.8E-11 69.3 20.8 188 21-228 31-233 (235)
111 KOG1128 Uncharacterized conser 98.8 4.2E-06 9E-11 73.5 23.3 214 62-296 402-615 (777)
112 PRK10370 formate-dependent nit 98.8 2.2E-06 4.8E-11 66.0 19.6 149 170-333 23-174 (198)
113 COG5010 TadD Flp pilus assembl 98.8 2.5E-06 5.3E-11 65.8 19.0 162 62-227 70-231 (257)
114 PF12854 PPR_1: PPR repeat 98.8 7.9E-09 1.7E-13 53.7 3.8 34 332-365 1-34 (34)
115 KOG0985 Vesicle coat protein c 98.8 7E-05 1.5E-09 68.6 30.4 85 163-255 1104-1188(1666)
116 KOG3616 Selective LIM binding 98.8 2.9E-06 6.3E-11 74.7 21.3 47 173-221 742-788 (1636)
117 PRK15179 Vi polysaccharide bio 98.8 3.5E-06 7.5E-11 77.0 22.0 146 55-204 83-228 (694)
118 COG5010 TadD Flp pilus assembl 98.8 4.9E-06 1.1E-10 64.2 19.3 158 132-293 70-227 (257)
119 PRK14720 transcript cleavage f 98.8 1.6E-05 3.4E-10 73.7 25.6 206 1-244 44-268 (906)
120 KOG3081 Vesicle coat complex C 98.7 2E-05 4.3E-10 61.0 21.8 249 30-295 15-269 (299)
121 KOG3060 Uncharacterized conser 98.7 3.8E-05 8.2E-10 59.1 22.9 190 36-229 25-222 (289)
122 PRK15359 type III secretion sy 98.7 3.1E-06 6.7E-11 61.6 17.0 93 63-157 29-121 (144)
123 KOG3081 Vesicle coat complex C 98.7 1.7E-05 3.7E-10 61.3 21.2 249 66-331 16-270 (299)
124 PRK15179 Vi polysaccharide bio 98.7 2.3E-05 4.9E-10 71.8 25.8 146 160-309 83-228 (694)
125 KOG1127 TPR repeat-containing 98.7 3.4E-05 7.3E-10 70.5 25.9 350 5-363 509-909 (1238)
126 PRK15359 type III secretion sy 98.7 4E-06 8.6E-11 61.0 16.9 93 168-262 29-121 (144)
127 KOG1914 mRNA cleavage and poly 98.7 0.00014 3E-09 62.2 30.2 349 20-374 17-471 (656)
128 KOG3060 Uncharacterized conser 98.7 6.4E-05 1.4E-09 57.8 23.0 188 2-193 26-221 (289)
129 COG4783 Putative Zn-dependent 98.7 0.00012 2.5E-09 61.9 26.2 112 138-253 316-428 (484)
130 KOG0985 Vesicle coat protein c 98.7 0.00029 6.4E-09 64.8 30.2 132 31-184 1056-1187(1666)
131 KOG2053 Mitochondrial inherita 98.6 0.00047 1E-08 62.6 37.2 221 2-229 23-257 (932)
132 KOG3617 WD40 and TPR repeat-co 98.6 3.2E-05 6.8E-10 69.3 21.4 240 22-295 725-994 (1416)
133 TIGR02552 LcrH_SycD type III s 98.6 7.8E-06 1.7E-10 59.2 15.3 92 63-156 22-113 (135)
134 COG4783 Putative Zn-dependent 98.6 0.00016 3.5E-09 61.0 24.2 182 56-262 272-454 (484)
135 TIGR02552 LcrH_SycD type III s 98.6 9.8E-06 2.1E-10 58.6 15.4 96 94-191 18-113 (135)
136 KOG3616 Selective LIM binding 98.6 0.00029 6.2E-09 62.7 26.4 44 2-48 458-502 (1636)
137 KOG1127 TPR repeat-containing 98.6 0.00024 5.1E-09 65.2 26.3 353 5-366 475-878 (1238)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.3E-05 2.9E-10 67.8 15.2 120 239-364 175-294 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.6E-05 3.5E-10 67.3 14.9 128 57-190 168-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.4 5.5E-07 1.2E-11 47.6 4.2 33 340-372 2-34 (35)
141 PF09976 TPR_21: Tetratricopep 98.4 4.5E-05 9.8E-10 55.8 15.4 115 71-188 24-143 (145)
142 KOG2053 Mitochondrial inherita 98.4 0.0017 3.6E-08 59.2 32.2 226 33-264 19-257 (932)
143 PF13812 PPR_3: Pentatricopept 98.3 8.7E-07 1.9E-11 46.4 3.9 33 339-371 2-34 (34)
144 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.2E-11 45.9 4.4 33 270-302 2-34 (35)
145 PF10037 MRP-S27: Mitochondria 98.3 2.8E-05 6.1E-10 66.2 14.0 124 53-176 61-186 (429)
146 PF09976 TPR_21: Tetratricopep 98.3 0.00011 2.4E-09 53.7 15.6 117 246-364 24-144 (145)
147 PF10037 MRP-S27: Mitochondria 98.3 2.5E-05 5.4E-10 66.5 13.3 124 158-281 61-186 (429)
148 PF13812 PPR_3: Pentatricopept 98.3 1.6E-06 3.4E-11 45.4 4.0 33 24-56 2-34 (34)
149 PF08579 RPM2: Mitochondrial r 98.2 6.4E-05 1.4E-09 50.1 10.5 74 137-210 34-116 (120)
150 cd00189 TPR Tetratricopeptide 98.1 9.4E-05 2E-09 49.4 11.7 17 102-118 43-59 (100)
151 PF08579 RPM2: Mitochondrial r 98.1 0.00011 2.3E-09 49.1 10.7 76 240-315 32-116 (120)
152 cd00189 TPR Tetratricopeptide 98.1 0.0001 2.2E-09 49.3 11.3 96 25-122 2-97 (100)
153 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00027 5.8E-09 49.7 13.7 13 36-48 15-27 (119)
154 PF05843 Suf: Suppressor of fo 98.1 0.00017 3.8E-09 59.0 14.1 143 164-311 2-148 (280)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00027 5.9E-09 49.6 13.2 99 59-158 3-106 (119)
156 PRK15363 pathogenicity island 98.0 0.00075 1.6E-08 48.7 14.7 93 63-157 40-132 (157)
157 PF12895 Apc3: Anaphase-promot 98.0 1.3E-05 2.7E-10 52.4 5.3 20 29-48 31-50 (84)
158 PF01535 PPR: PPR repeat; Int 98.0 8.1E-06 1.8E-10 41.6 3.5 29 340-368 2-30 (31)
159 CHL00033 ycf3 photosystem I as 98.0 0.0002 4.3E-09 53.9 12.4 63 24-86 36-100 (168)
160 PF05843 Suf: Suppressor of fo 98.0 0.00026 5.6E-09 58.0 13.8 131 199-332 2-136 (280)
161 PF12895 Apc3: Anaphase-promot 98.0 1.9E-05 4.2E-10 51.5 5.9 81 36-118 2-83 (84)
162 PRK15363 pathogenicity island 98.0 0.00044 9.6E-09 49.9 13.1 97 24-122 36-132 (157)
163 PRK02603 photosystem I assembl 98.0 0.001 2.2E-08 50.3 15.8 84 60-144 37-122 (172)
164 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.7E-10 40.9 3.5 29 305-333 2-30 (31)
165 PLN03088 SGT1, suppressor of 97.9 0.00056 1.2E-08 58.2 15.0 92 30-123 9-100 (356)
166 PRK10866 outer membrane biogen 97.9 0.0062 1.3E-07 48.7 20.2 184 57-260 31-239 (243)
167 PLN03088 SGT1, suppressor of 97.9 0.00056 1.2E-08 58.2 14.9 92 65-158 9-100 (356)
168 PRK10866 outer membrane biogen 97.9 0.0072 1.6E-07 48.4 19.4 184 92-295 31-239 (243)
169 KOG2041 WD40 repeat protein [G 97.9 0.012 2.6E-07 52.6 21.5 16 36-51 747-762 (1189)
170 KOG0553 TPR repeat-containing 97.9 0.00016 3.5E-09 57.3 9.3 101 242-346 90-190 (304)
171 PRK02603 photosystem I assembl 97.8 0.0019 4.2E-08 48.8 14.9 85 200-285 37-123 (172)
172 PRK10153 DNA-binding transcrip 97.8 0.0023 5E-08 57.1 17.4 137 229-368 333-483 (517)
173 PRK10153 DNA-binding transcrip 97.8 0.0037 8.1E-08 55.8 18.7 63 164-228 421-483 (517)
174 PF06239 ECSIT: Evolutionarily 97.8 0.00063 1.4E-08 51.6 11.4 87 127-213 46-153 (228)
175 CHL00033 ycf3 photosystem I as 97.8 0.0012 2.6E-08 49.7 13.4 64 94-157 36-101 (168)
176 PF12688 TPR_5: Tetratrico pep 97.7 0.0037 8E-08 43.5 13.6 89 31-120 9-102 (120)
177 PF12688 TPR_5: Tetratrico pep 97.7 0.0017 3.6E-08 45.1 11.9 100 1-104 14-117 (120)
178 PF06239 ECSIT: Evolutionarily 97.7 0.0015 3.3E-08 49.6 12.2 87 231-317 45-152 (228)
179 COG4235 Cytochrome c biogenesi 97.7 0.0037 8.1E-08 50.0 14.9 116 214-332 138-256 (287)
180 PF14938 SNAP: Soluble NSF att 97.7 0.008 1.7E-07 49.5 17.6 94 134-227 120-225 (282)
181 PF13525 YfiO: Outer membrane 97.7 0.014 3.1E-07 45.4 18.4 60 28-87 10-71 (203)
182 PF13432 TPR_16: Tetratricopep 97.7 0.00025 5.4E-09 43.5 6.6 56 310-366 4-59 (65)
183 KOG0550 Molecular chaperone (D 97.7 0.0073 1.6E-07 50.4 16.3 279 67-352 58-371 (486)
184 KOG0553 TPR repeat-containing 97.7 0.0012 2.6E-08 52.5 11.3 99 103-205 91-189 (304)
185 PF14938 SNAP: Soluble NSF att 97.6 0.0028 6.1E-08 52.2 14.0 111 238-349 119-246 (282)
186 PF13414 TPR_11: TPR repeat; P 97.6 0.00043 9.3E-09 43.1 7.1 59 60-119 5-64 (69)
187 PF13432 TPR_16: Tetratricopep 97.6 0.0005 1.1E-08 42.2 7.1 54 67-121 6-59 (65)
188 PF13414 TPR_11: TPR repeat; P 97.6 0.00033 7.2E-09 43.6 6.2 62 304-366 4-66 (69)
189 PF14559 TPR_19: Tetratricopep 97.6 0.00053 1.2E-08 42.5 6.9 49 72-121 5-53 (68)
190 PF14559 TPR_19: Tetratricopep 97.6 0.00036 7.8E-09 43.3 6.1 52 35-87 3-54 (68)
191 COG4235 Cytochrome c biogenesi 97.6 0.011 2.4E-07 47.4 15.4 122 81-207 145-269 (287)
192 KOG2796 Uncharacterized conser 97.5 0.027 5.9E-07 44.2 20.3 133 95-228 179-316 (366)
193 KOG1130 Predicted G-alpha GTPa 97.5 0.0043 9.4E-08 51.7 12.8 133 199-331 196-343 (639)
194 PF07079 DUF1347: Protein of u 97.4 0.057 1.2E-06 46.0 32.7 355 1-365 19-522 (549)
195 COG4700 Uncharacterized protei 97.4 0.026 5.5E-07 41.9 18.5 127 90-218 86-213 (251)
196 PF13525 YfiO: Outer membrane 97.4 0.037 8E-07 43.1 18.5 56 136-191 13-70 (203)
197 PF03704 BTAD: Bacterial trans 97.4 0.029 6.3E-07 41.0 15.2 54 100-154 69-122 (146)
198 KOG2280 Vacuolar assembly/sort 97.3 0.11 2.5E-06 47.1 24.4 322 16-361 425-793 (829)
199 KOG1538 Uncharacterized conser 97.3 0.041 8.9E-07 48.9 17.3 37 114-153 621-657 (1081)
200 PF03704 BTAD: Bacterial trans 97.3 0.0039 8.4E-08 45.7 9.8 72 60-132 64-140 (146)
201 PF12921 ATP13: Mitochondrial 97.3 0.0073 1.6E-07 42.5 10.5 52 298-349 47-99 (126)
202 KOG1130 Predicted G-alpha GTPa 97.3 0.0066 1.4E-07 50.6 11.4 134 234-367 196-344 (639)
203 KOG2041 WD40 repeat protein [G 97.3 0.13 2.9E-06 46.3 20.0 122 20-153 689-821 (1189)
204 PRK10803 tol-pal system protei 97.3 0.0095 2.1E-07 48.1 12.2 85 280-366 155-245 (263)
205 COG3898 Uncharacterized membra 97.2 0.098 2.1E-06 43.7 32.5 286 70-372 96-397 (531)
206 PRK10803 tol-pal system protei 97.2 0.016 3.4E-07 46.9 13.0 99 130-228 145-247 (263)
207 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.12 2.6E-06 44.1 27.9 129 234-366 398-530 (660)
208 PF13371 TPR_9: Tetratricopept 97.2 0.0023 5E-08 40.3 6.7 55 67-122 4-58 (73)
209 COG4700 Uncharacterized protei 97.2 0.057 1.2E-06 40.1 18.6 132 124-259 85-219 (251)
210 PF13371 TPR_9: Tetratricopept 97.2 0.0023 5E-08 40.2 6.4 55 277-332 4-58 (73)
211 KOG0550 Molecular chaperone (D 97.2 0.12 2.6E-06 43.5 22.9 259 31-298 57-351 (486)
212 PRK15331 chaperone protein Sic 97.1 0.026 5.7E-07 41.2 12.2 90 240-331 44-133 (165)
213 PF04840 Vps16_C: Vps16, C-ter 97.1 0.14 3E-06 42.9 28.8 106 235-360 179-284 (319)
214 PF13424 TPR_12: Tetratricopep 97.0 0.0024 5.1E-08 40.9 5.5 61 305-365 7-73 (78)
215 PF12921 ATP13: Mitochondrial 97.0 0.018 3.9E-07 40.5 10.1 99 197-315 1-100 (126)
216 PF13281 DUF4071: Domain of un 97.0 0.18 3.9E-06 42.7 19.1 31 232-262 304-334 (374)
217 PRK15331 chaperone protein Sic 96.9 0.021 4.5E-07 41.7 10.2 87 68-156 47-133 (165)
218 PF13281 DUF4071: Domain of un 96.8 0.24 5.2E-06 42.0 20.0 168 163-332 141-334 (374)
219 KOG1538 Uncharacterized conser 96.8 0.33 7.2E-06 43.5 18.9 87 199-296 748-845 (1081)
220 PF04053 Coatomer_WDAD: Coatom 96.8 0.065 1.4E-06 46.9 13.8 157 32-224 270-428 (443)
221 COG3898 Uncharacterized membra 96.7 0.28 6.1E-06 41.2 30.4 284 36-332 97-392 (531)
222 PF13424 TPR_12: Tetratricopep 96.7 0.0079 1.7E-07 38.4 6.1 22 167-188 50-71 (78)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.13 2.9E-06 44.2 14.4 64 93-156 75-140 (453)
224 PF10300 DUF3808: Protein of u 96.6 0.41 8.9E-06 42.7 17.8 178 42-226 176-375 (468)
225 KOG0543 FKBP-type peptidyl-pro 96.5 0.067 1.5E-06 44.9 11.6 98 268-367 257-355 (397)
226 COG3118 Thioredoxin domain-con 96.5 0.34 7.4E-06 39.1 14.7 153 30-186 141-295 (304)
227 KOG2796 Uncharacterized conser 96.5 0.32 6.9E-06 38.5 25.3 137 199-336 178-319 (366)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.15 3.3E-06 43.9 13.6 65 57-122 74-141 (453)
229 PF09205 DUF1955: Domain of un 96.4 0.19 4E-06 35.1 14.2 63 271-334 89-151 (161)
230 KOG1941 Acetylcholine receptor 96.4 0.23 5.1E-06 41.2 13.6 23 270-292 164-186 (518)
231 PF04053 Coatomer_WDAD: Coatom 96.4 0.16 3.6E-06 44.5 13.6 157 68-258 271-427 (443)
232 PF08631 SPO22: Meiosis protei 96.3 0.52 1.1E-05 38.8 25.4 164 200-365 86-273 (278)
233 PF04840 Vps16_C: Vps16, C-ter 96.2 0.58 1.3E-05 39.2 28.1 110 199-328 178-287 (319)
234 KOG0543 FKBP-type peptidyl-pro 96.2 0.17 3.7E-06 42.6 12.4 138 31-191 216-354 (397)
235 PF10300 DUF3808: Protein of u 96.2 0.53 1.2E-05 42.0 16.4 164 200-366 190-375 (468)
236 PF07079 DUF1347: Protein of u 96.2 0.68 1.5E-05 39.8 31.9 127 209-343 390-530 (549)
237 KOG2610 Uncharacterized conser 96.2 0.21 4.6E-06 40.9 12.3 154 175-330 115-274 (491)
238 KOG3941 Intermediate in Toll s 96.2 0.13 2.9E-06 41.0 10.9 34 180-213 140-173 (406)
239 KOG2280 Vacuolar assembly/sort 96.2 1 2.2E-05 41.3 23.6 305 2-327 451-794 (829)
240 PF13428 TPR_14: Tetratricopep 96.1 0.019 4.1E-07 31.7 4.6 38 305-343 3-40 (44)
241 smart00299 CLH Clathrin heavy 96.0 0.37 8E-06 34.9 13.7 128 200-350 9-137 (140)
242 COG1729 Uncharacterized protei 96.0 0.17 3.8E-06 40.3 10.9 96 270-366 144-243 (262)
243 COG3118 Thioredoxin domain-con 96.0 0.66 1.4E-05 37.6 17.7 121 68-191 144-264 (304)
244 KOG2610 Uncharacterized conser 96.0 0.32 6.9E-06 40.0 12.2 153 33-188 113-272 (491)
245 KOG3941 Intermediate in Toll s 95.9 0.14 3E-06 40.9 10.0 34 285-318 140-173 (406)
246 PF13428 TPR_14: Tetratricopep 95.9 0.033 7.1E-07 30.8 4.8 22 65-86 8-29 (44)
247 PF08631 SPO22: Meiosis protei 95.8 0.84 1.8E-05 37.6 25.4 120 2-122 7-150 (278)
248 KOG2114 Vacuolar assembly/sort 95.8 0.23 4.9E-06 45.9 12.1 16 281-296 574-589 (933)
249 KOG4555 TPR repeat-containing 95.8 0.28 6.1E-06 34.2 9.8 91 242-333 52-145 (175)
250 PRK11906 transcriptional regul 95.8 1.2 2.5E-05 38.9 17.0 163 199-364 252-433 (458)
251 PRK11906 transcriptional regul 95.7 1.3 2.8E-05 38.6 16.8 82 74-157 320-401 (458)
252 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.2 2.7E-05 38.3 22.6 132 163-297 397-531 (660)
253 PF09205 DUF1955: Domain of un 95.7 0.46 1E-05 33.3 16.5 64 130-194 88-151 (161)
254 COG1729 Uncharacterized protei 95.7 0.35 7.7E-06 38.6 11.3 59 169-227 184-244 (262)
255 KOG1585 Protein required for f 95.7 0.8 1.7E-05 36.0 16.4 203 131-360 34-249 (308)
256 KOG4555 TPR repeat-containing 95.6 0.44 9.6E-06 33.3 10.0 91 67-158 52-145 (175)
257 smart00299 CLH Clathrin heavy 95.5 0.63 1.4E-05 33.6 15.7 126 166-314 10-136 (140)
258 PF04184 ST7: ST7 protein; In 95.4 1.7 3.7E-05 38.1 17.2 163 28-205 173-338 (539)
259 PF07035 Mic1: Colon cancer-as 95.4 0.78 1.7E-05 34.1 15.4 133 80-226 16-148 (167)
260 KOG1941 Acetylcholine receptor 95.3 1.3 2.9E-05 36.9 13.8 227 34-260 17-273 (518)
261 COG3629 DnrI DNA-binding trans 95.3 0.33 7.2E-06 39.3 10.4 79 93-172 153-236 (280)
262 COG3629 DnrI DNA-binding trans 95.1 0.42 9.1E-06 38.8 10.4 77 270-347 155-236 (280)
263 COG4105 ComL DNA uptake lipopr 95.0 1.5 3.2E-05 34.9 20.3 55 274-329 173-230 (254)
264 COG4105 ComL DNA uptake lipopr 94.9 1.5 3.3E-05 34.8 20.8 81 58-139 35-117 (254)
265 PF13512 TPR_18: Tetratricopep 94.9 0.95 2.1E-05 32.4 12.3 59 30-88 17-77 (142)
266 KOG1585 Protein required for f 94.8 1.6 3.4E-05 34.4 17.8 205 60-291 33-250 (308)
267 COG4649 Uncharacterized protei 94.6 1.4 2.9E-05 32.7 13.8 139 57-196 58-200 (221)
268 PF10602 RPN7: 26S proteasome 94.6 0.72 1.6E-05 34.9 10.0 59 26-84 39-99 (177)
269 PF13170 DUF4003: Protein of u 94.5 2.4 5.2E-05 35.2 20.1 129 109-239 78-223 (297)
270 PF13176 TPR_7: Tetratricopept 94.4 0.1 2.2E-06 27.2 3.8 26 340-365 1-26 (36)
271 COG0457 NrfG FOG: TPR repeat [ 94.4 2 4.3E-05 33.9 29.6 222 107-331 37-264 (291)
272 PF13431 TPR_17: Tetratricopep 94.3 0.054 1.2E-06 27.9 2.5 32 326-358 2-33 (34)
273 PF10602 RPN7: 26S proteasome 94.2 1.3 2.7E-05 33.6 10.7 61 60-120 38-100 (177)
274 KOG2114 Vacuolar assembly/sort 94.2 4.9 0.00011 37.8 23.0 60 308-371 710-773 (933)
275 PF04184 ST7: ST7 protein; In 94.2 3.6 7.9E-05 36.2 20.5 57 239-295 265-322 (539)
276 KOG1258 mRNA processing protei 94.1 4.2 9E-05 36.6 29.6 184 163-352 297-489 (577)
277 COG0457 NrfG FOG: TPR repeat [ 94.0 2.4 5.2E-05 33.3 29.2 226 37-297 37-265 (291)
278 COG4649 Uncharacterized protei 93.9 2 4.3E-05 31.9 13.5 139 92-231 58-200 (221)
279 PF13512 TPR_18: Tetratricopep 93.9 1.7 3.7E-05 31.2 13.2 55 138-192 20-76 (142)
280 PF13176 TPR_7: Tetratricopept 93.7 0.23 4.9E-06 25.9 4.2 24 166-189 2-25 (36)
281 PF07035 Mic1: Colon cancer-as 93.6 2.2 4.8E-05 31.7 15.4 131 45-189 16-146 (167)
282 KOG4570 Uncharacterized conser 93.6 1.4 3.1E-05 36.0 10.1 128 169-298 25-165 (418)
283 KOG4570 Uncharacterized conser 93.6 1.6 3.5E-05 35.7 10.4 103 158-262 59-164 (418)
284 PRK15180 Vi polysaccharide bio 93.5 1.9 4.2E-05 37.5 11.3 123 244-370 300-423 (831)
285 PF13431 TPR_17: Tetratricopep 93.5 0.093 2E-06 27.0 2.4 22 91-112 11-32 (34)
286 PF13929 mRNA_stabil: mRNA sta 93.2 3.9 8.5E-05 33.3 15.1 136 73-208 143-288 (292)
287 PF11207 DUF2989: Protein of u 93.2 1.2 2.7E-05 34.0 8.8 78 34-113 118-198 (203)
288 COG2909 MalT ATP-dependent tra 93.0 8.4 0.00018 36.6 23.6 199 173-371 425-651 (894)
289 KOG0276 Vesicle coat complex C 92.9 3.4 7.3E-05 37.3 12.1 99 104-223 648-746 (794)
290 KOG1920 IkappaB kinase complex 92.2 13 0.00028 36.7 21.7 31 20-51 788-820 (1265)
291 PF02284 COX5A: Cytochrome c o 91.9 1.9 4.1E-05 28.7 7.2 47 216-262 28-74 (108)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 91.7 2.5 5.5E-05 27.8 7.6 46 215-260 24-69 (103)
293 PF11207 DUF2989: Protein of u 91.6 3 6.4E-05 32.0 9.1 73 145-218 123-198 (203)
294 PF13170 DUF4003: Protein of u 91.6 7 0.00015 32.5 22.7 130 180-311 79-225 (297)
295 COG4785 NlpI Lipoprotein NlpI, 91.6 5.3 0.00011 31.1 16.9 64 93-157 99-162 (297)
296 PF09613 HrpB1_HrpK: Bacterial 91.5 4.3 9.3E-05 29.9 13.5 51 70-121 22-72 (160)
297 PF02284 COX5A: Cytochrome c o 91.4 3 6.5E-05 27.8 8.3 47 41-87 28-74 (108)
298 PF09613 HrpB1_HrpK: Bacterial 91.4 4.5 9.8E-05 29.8 13.7 51 34-86 21-72 (160)
299 COG4785 NlpI Lipoprotein NlpI, 91.3 5.7 0.00012 30.9 16.5 178 37-227 79-266 (297)
300 KOG1920 IkappaB kinase complex 91.2 17 0.00036 36.1 26.2 31 90-121 788-820 (1265)
301 PF00515 TPR_1: Tetratricopept 91.2 0.67 1.5E-05 23.5 4.0 28 339-366 2-29 (34)
302 PF13374 TPR_10: Tetratricopep 91.2 0.59 1.3E-05 25.0 4.1 28 339-366 3-30 (42)
303 KOG0890 Protein kinase of the 91.1 25 0.00054 37.8 24.8 320 28-367 1388-1731(2382)
304 KOG4234 TPR repeat-containing 90.9 5.2 0.00011 30.6 9.6 88 68-157 105-197 (271)
305 PF07719 TPR_2: Tetratricopept 90.7 0.8 1.7E-05 23.1 4.0 28 339-366 2-29 (34)
306 PRK15180 Vi polysaccharide bio 90.4 12 0.00026 33.0 14.4 122 69-193 300-421 (831)
307 COG1747 Uncharacterized N-term 90.2 13 0.00028 33.1 24.5 165 162-333 65-235 (711)
308 PF00515 TPR_1: Tetratricopept 89.9 0.79 1.7E-05 23.2 3.6 27 305-331 3-29 (34)
309 TIGR03504 FimV_Cterm FimV C-te 89.8 0.68 1.5E-05 25.5 3.3 26 343-368 4-29 (44)
310 KOG1550 Extracellular protein 89.4 18 0.00038 33.5 27.0 112 5-123 229-358 (552)
311 PF13374 TPR_10: Tetratricopep 89.4 1.3 2.8E-05 23.6 4.4 27 164-190 3-29 (42)
312 PF02259 FAT: FAT domain; Int 89.3 13 0.00028 31.8 22.0 65 197-261 145-212 (352)
313 KOG1258 mRNA processing protei 89.2 17 0.00036 33.0 30.3 326 21-358 43-420 (577)
314 KOG0890 Protein kinase of the 89.1 36 0.00078 36.7 24.9 309 2-332 1397-1731(2382)
315 KOG1550 Extracellular protein 89.1 19 0.0004 33.3 24.6 278 74-368 228-539 (552)
316 KOG1464 COP9 signalosome, subu 89.0 11 0.00023 30.5 13.3 209 158-367 21-260 (440)
317 TIGR02561 HrpB1_HrpK type III 89.0 7 0.00015 28.3 12.3 52 71-123 23-74 (153)
318 PF00637 Clathrin: Region in C 89.0 0.21 4.6E-06 36.3 1.3 128 204-353 13-140 (143)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 89.0 4.9 0.00011 26.5 8.8 62 38-100 22-83 (103)
320 PRK09687 putative lyase; Provi 88.7 12 0.00027 30.9 27.2 136 162-313 141-277 (280)
321 COG4455 ImpE Protein of avirul 88.6 4.8 0.0001 31.3 8.0 77 25-102 3-81 (273)
322 PF02259 FAT: FAT domain; Int 88.3 15 0.00033 31.4 21.8 65 127-191 145-212 (352)
323 PRK11619 lytic murein transgly 88.3 23 0.0005 33.4 28.1 310 34-365 44-373 (644)
324 PF07575 Nucleopor_Nup85: Nup8 88.2 22 0.00047 33.0 18.5 31 350-380 507-537 (566)
325 PF08424 NRDE-2: NRDE-2, neces 88.1 15 0.00033 31.1 17.0 98 195-294 16-128 (321)
326 PF07719 TPR_2: Tetratricopept 88.0 1.8 3.9E-05 21.7 4.2 27 25-51 3-29 (34)
327 KOG4234 TPR repeat-containing 88.0 6.4 0.00014 30.2 8.2 89 138-228 105-198 (271)
328 PF00637 Clathrin: Region in C 87.7 0.34 7.4E-06 35.2 1.7 83 29-118 13-95 (143)
329 PF13181 TPR_8: Tetratricopept 87.6 1.8 3.9E-05 21.8 4.0 27 340-366 3-29 (34)
330 COG4455 ImpE Protein of avirul 86.8 8.6 0.00019 30.0 8.4 56 133-189 6-61 (273)
331 PRK09687 putative lyase; Provi 86.7 17 0.00036 30.1 27.6 234 91-349 35-278 (280)
332 COG2909 MalT ATP-dependent tra 86.6 31 0.00067 33.1 28.4 223 103-328 425-684 (894)
333 TIGR02508 type_III_yscG type I 86.5 7.5 0.00016 25.9 8.8 79 38-123 20-98 (115)
334 PF07721 TPR_4: Tetratricopept 86.0 1.2 2.7E-05 21.0 2.6 19 343-361 6-24 (26)
335 KOG2066 Vacuolar assembly/sort 85.9 32 0.00068 32.5 21.3 71 68-144 366-439 (846)
336 KOG4648 Uncharacterized conser 85.9 3.2 6.9E-05 34.6 6.3 51 33-85 107-158 (536)
337 TIGR03504 FimV_Cterm FimV C-te 85.7 2.2 4.7E-05 23.5 3.7 20 101-120 7-26 (44)
338 PF07163 Pex26: Pex26 protein; 85.7 18 0.00039 29.5 12.9 125 27-151 39-181 (309)
339 PF13174 TPR_6: Tetratricopept 85.5 1.6 3.5E-05 21.7 3.1 27 341-367 3-29 (33)
340 KOG4648 Uncharacterized conser 85.1 4.6 9.9E-05 33.7 6.8 90 66-157 105-194 (536)
341 COG2976 Uncharacterized protei 84.7 16 0.00034 28.0 14.4 89 240-333 96-189 (207)
342 COG1747 Uncharacterized N-term 84.1 31 0.00067 30.9 25.7 164 92-262 65-234 (711)
343 PF13181 TPR_8: Tetratricopept 83.8 3.8 8.2E-05 20.5 4.1 25 96-120 4-28 (34)
344 KOG0276 Vesicle coat complex C 83.7 18 0.0004 32.9 10.2 134 23-189 614-747 (794)
345 COG3947 Response regulator con 82.9 25 0.00054 28.9 15.6 69 305-374 281-354 (361)
346 TIGR02561 HrpB1_HrpK type III 82.7 16 0.00035 26.6 12.5 51 141-193 23-74 (153)
347 KOG2066 Vacuolar assembly/sort 82.6 45 0.00097 31.6 24.7 95 2-105 370-467 (846)
348 PHA02875 ankyrin repeat protei 82.3 35 0.00075 30.1 12.7 212 102-339 8-231 (413)
349 KOG4077 Cytochrome c oxidase, 82.1 6.9 0.00015 27.3 5.6 47 286-332 67-113 (149)
350 COG3947 Response regulator con 82.0 27 0.00059 28.7 17.2 70 270-340 281-355 (361)
351 KOG2063 Vacuolar assembly/sort 81.0 58 0.0013 31.8 16.6 38 208-245 601-638 (877)
352 PF10345 Cohesin_load: Cohesin 80.7 51 0.0011 31.0 29.8 48 315-362 373-428 (608)
353 KOG4077 Cytochrome c oxidase, 80.6 16 0.00035 25.6 6.9 45 78-122 69-113 (149)
354 COG5159 RPN6 26S proteasome re 80.5 30 0.00066 28.3 10.4 33 343-375 130-166 (421)
355 PF13929 mRNA_stabil: mRNA sta 79.6 33 0.00072 28.2 17.7 63 265-327 199-262 (292)
356 PF07163 Pex26: Pex26 protein; 78.6 35 0.00076 27.9 13.6 88 134-221 89-181 (309)
357 PF09477 Type_III_YscG: Bacter 78.5 18 0.00039 24.5 9.7 79 38-123 21-99 (116)
358 PRK11619 lytic murein transgly 78.3 63 0.0014 30.6 29.1 289 62-367 103-436 (644)
359 PF08424 NRDE-2: NRDE-2, neces 78.2 41 0.0009 28.5 18.6 98 20-119 16-128 (321)
360 COG0735 Fur Fe2+/Zn2+ uptake r 77.6 19 0.00041 26.2 7.3 44 203-246 25-68 (145)
361 COG2976 Uncharacterized protei 77.5 30 0.00065 26.6 14.8 132 58-193 54-189 (207)
362 COG0735 Fur Fe2+/Zn2+ uptake r 77.1 18 0.00039 26.3 7.1 62 255-317 8-69 (145)
363 PHA02875 ankyrin repeat protei 76.9 52 0.0011 29.0 16.4 208 67-303 8-230 (413)
364 PF11846 DUF3366: Domain of un 76.9 14 0.0003 28.5 6.9 33 300-332 141-173 (193)
365 KOG2063 Vacuolar assembly/sort 76.8 78 0.0017 31.0 16.4 39 137-175 600-638 (877)
366 PF07575 Nucleopor_Nup85: Nup8 76.5 10 0.00022 35.1 7.0 57 97-155 409-465 (566)
367 cd08819 CARD_MDA5_2 Caspase ac 76.2 18 0.0004 23.4 7.0 65 42-112 21-85 (88)
368 PF13762 MNE1: Mitochondrial s 76.2 27 0.00059 25.4 9.9 80 62-141 43-128 (145)
369 PF10579 Rapsyn_N: Rapsyn N-te 76.0 9.1 0.0002 24.2 4.4 46 315-360 18-65 (80)
370 cd00280 TRFH Telomeric Repeat 75.3 34 0.00073 26.0 9.9 67 74-143 85-158 (200)
371 PF06552 TOM20_plant: Plant sp 74.7 35 0.00075 25.9 10.1 14 160-173 110-123 (186)
372 smart00028 TPR Tetratricopepti 74.7 7.2 0.00016 18.4 3.5 17 347-363 10-26 (34)
373 KOG4507 Uncharacterized conser 74.4 23 0.0005 32.2 8.0 114 8-122 195-312 (886)
374 KOG4507 Uncharacterized conser 74.4 26 0.00057 31.9 8.3 152 20-174 568-721 (886)
375 cd08819 CARD_MDA5_2 Caspase ac 74.0 21 0.00046 23.1 7.2 14 317-330 50-63 (88)
376 PF11848 DUF3368: Domain of un 73.8 14 0.00029 20.8 4.9 31 315-345 14-44 (48)
377 PF11846 DUF3366: Domain of un 73.3 25 0.00054 27.1 7.4 33 90-122 141-173 (193)
378 PRK10564 maltose regulon perip 72.9 4.8 0.0001 33.0 3.5 35 341-375 260-294 (303)
379 PF12862 Apc5: Anaphase-promot 72.4 25 0.00054 23.2 6.6 18 348-365 51-68 (94)
380 PF14689 SPOB_a: Sensor_kinase 72.4 14 0.0003 22.2 4.6 24 62-85 27-50 (62)
381 cd00280 TRFH Telomeric Repeat 71.6 42 0.0009 25.5 7.6 41 134-177 117-157 (200)
382 PF10579 Rapsyn_N: Rapsyn N-te 71.4 14 0.00031 23.4 4.5 45 35-79 18-64 (80)
383 PF06552 TOM20_plant: Plant sp 71.4 42 0.00092 25.4 10.1 42 109-158 96-137 (186)
384 PF14689 SPOB_a: Sensor_kinase 69.8 15 0.00034 22.0 4.4 22 99-120 29-50 (62)
385 PF04097 Nic96: Nup93/Nic96; 69.5 1E+02 0.0022 29.1 19.5 88 170-262 265-356 (613)
386 KOG0128 RNA-binding protein SA 69.4 1.1E+02 0.0024 29.5 29.8 99 21-122 111-219 (881)
387 COG5159 RPN6 26S proteasome re 67.4 70 0.0015 26.4 11.4 23 307-329 129-151 (421)
388 PF09670 Cas_Cas02710: CRISPR- 66.9 88 0.0019 27.4 10.7 53 208-261 141-197 (379)
389 PRK11639 zinc uptake transcrip 66.7 53 0.0011 24.7 7.7 58 14-72 17-74 (169)
390 PF11663 Toxin_YhaV: Toxin wit 66.5 7.6 0.00017 27.5 2.9 28 177-206 109-136 (140)
391 PF13762 MNE1: Mitochondrial s 65.1 51 0.0011 24.0 10.8 24 201-224 42-65 (145)
392 KOG4642 Chaperone-dependent E3 65.0 71 0.0015 25.6 11.3 79 73-154 25-104 (284)
393 KOG4567 GTPase-activating prot 64.7 60 0.0013 27.0 7.8 71 218-293 263-343 (370)
394 PRK10564 maltose regulon perip 64.5 19 0.00041 29.8 5.1 31 95-125 259-289 (303)
395 COG5108 RPO41 Mitochondrial DN 64.0 90 0.002 29.3 9.5 75 98-175 33-115 (1117)
396 PF11848 DUF3368: Domain of un 64.0 24 0.00052 19.8 5.0 12 147-158 21-32 (48)
397 PF10366 Vps39_1: Vacuolar sor 63.8 45 0.00097 22.8 8.9 27 200-226 41-67 (108)
398 KOG4567 GTPase-activating prot 63.5 88 0.0019 26.2 8.8 45 43-87 263-307 (370)
399 COG0790 FOG: TPR repeat, SEL1 63.1 87 0.0019 26.0 22.7 25 213-237 252-276 (292)
400 KOG3364 Membrane protein invol 62.5 55 0.0012 23.5 8.1 67 265-332 29-100 (149)
401 PRK09857 putative transposase; 62.4 73 0.0016 26.6 8.4 64 308-372 211-274 (292)
402 PF11663 Toxin_YhaV: Toxin wit 62.3 10 0.00022 26.9 2.8 30 141-172 108-137 (140)
403 PF04910 Tcf25: Transcriptiona 62.2 1.1E+02 0.0023 26.7 20.1 28 22-49 39-66 (360)
404 KOG2471 TPR repeat-containing 61.8 1.2E+02 0.0027 27.3 15.4 274 2-280 31-381 (696)
405 COG5108 RPO41 Mitochondrial DN 61.1 94 0.002 29.2 9.1 91 28-121 33-131 (1117)
406 KOG0376 Serine-threonine phosp 60.7 29 0.00064 30.7 5.9 52 33-86 14-66 (476)
407 KOG1308 Hsp70-interacting prot 60.6 5.3 0.00012 33.3 1.5 120 243-367 124-244 (377)
408 KOG4642 Chaperone-dependent E3 60.3 89 0.0019 25.1 11.1 118 32-153 19-142 (284)
409 TIGR02508 type_III_yscG type I 59.6 51 0.0011 22.2 8.5 14 138-151 49-62 (115)
410 KOG1308 Hsp70-interacting prot 59.5 7.6 0.00017 32.5 2.2 47 72-119 128-174 (377)
411 smart00386 HAT HAT (Half-A-TPR 58.7 20 0.00044 17.2 4.0 28 317-345 1-28 (33)
412 PRK11639 zinc uptake transcrip 58.5 77 0.0017 23.9 7.6 37 211-247 38-74 (169)
413 KOG2396 HAT (Half-A-TPR) repea 58.4 1.4E+02 0.0031 26.9 33.7 98 266-366 457-558 (568)
414 PF04097 Nic96: Nup93/Nic96; 57.3 1.8E+02 0.0038 27.6 16.4 87 206-297 266-356 (613)
415 PRK10941 hypothetical protein; 57.2 1.1E+02 0.0024 25.2 10.3 76 271-347 184-260 (269)
416 KOG2396 HAT (Half-A-TPR) repea 56.6 1.5E+02 0.0033 26.8 25.6 92 237-331 464-558 (568)
417 PF14853 Fis1_TPR_C: Fis1 C-te 56.5 37 0.0008 19.6 4.4 22 310-331 8-29 (53)
418 PF11817 Foie-gras_1: Foie gra 56.3 94 0.002 25.2 8.0 23 29-51 16-38 (247)
419 KOG0686 COP9 signalosome, subu 55.9 1.4E+02 0.0031 26.1 15.0 23 61-83 153-175 (466)
420 PRK09462 fur ferric uptake reg 55.4 80 0.0017 23.1 7.7 61 13-74 7-68 (148)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 54.0 76 0.0017 22.4 8.8 44 76-119 81-125 (126)
422 PF10345 Cohesin_load: Cohesin 53.4 2E+02 0.0044 27.2 33.3 184 5-189 38-251 (608)
423 PF09986 DUF2225: Uncharacteri 53.2 1.1E+02 0.0024 24.1 9.8 24 344-367 171-194 (214)
424 KOG2659 LisH motif-containing 53.2 1.1E+02 0.0025 24.2 9.0 98 230-329 23-129 (228)
425 PF11817 Foie-gras_1: Foie gra 53.0 89 0.0019 25.3 7.4 59 307-365 182-245 (247)
426 PF02184 HAT: HAT (Half-A-TPR) 53.0 30 0.00065 17.5 3.4 23 3-27 2-24 (32)
427 cd07153 Fur_like Ferric uptake 52.5 52 0.0011 22.6 5.3 46 29-74 6-51 (116)
428 PRK13342 recombination factor 52.5 1.7E+02 0.0037 26.0 19.0 54 141-194 243-301 (413)
429 PF09670 Cas_Cas02710: CRISPR- 52.1 1.6E+02 0.0036 25.7 11.0 55 67-122 140-198 (379)
430 PRK09462 fur ferric uptake reg 52.0 91 0.002 22.8 7.2 63 257-320 6-69 (148)
431 PRK12798 chemotaxis protein; R 51.9 1.7E+02 0.0037 25.8 20.4 154 141-297 125-286 (421)
432 PF14561 TPR_20: Tetratricopep 51.7 67 0.0014 21.1 8.4 28 94-121 23-50 (90)
433 KOG3807 Predicted membrane pro 51.2 1.5E+02 0.0033 25.1 12.9 61 133-193 280-341 (556)
434 smart00804 TAP_C C-terminal do 51.2 17 0.00037 21.9 2.2 21 3-23 40-61 (63)
435 KOG0686 COP9 signalosome, subu 50.5 1.8E+02 0.0038 25.6 14.5 176 93-276 150-352 (466)
436 PF00244 14-3-3: 14-3-3 protei 50.5 1.3E+02 0.0029 24.2 13.2 36 67-102 10-45 (236)
437 KOG2297 Predicted translation 50.3 1.5E+02 0.0033 24.8 20.3 69 211-288 268-341 (412)
438 PRK10941 hypothetical protein; 49.7 1.5E+02 0.0032 24.5 10.6 78 96-174 184-262 (269)
439 cd07153 Fur_like Ferric uptake 49.5 55 0.0012 22.5 5.0 49 273-321 5-53 (116)
440 PF07678 A2M_comp: A-macroglob 49.5 1.4E+02 0.003 24.2 8.8 16 176-191 205-220 (246)
441 PF12862 Apc5: Anaphase-promot 49.1 75 0.0016 20.9 7.1 23 169-191 47-69 (94)
442 PF01475 FUR: Ferric uptake re 48.6 54 0.0012 22.8 4.9 47 27-73 11-57 (120)
443 PF03745 DUF309: Domain of unk 48.0 60 0.0013 19.5 5.5 32 70-101 11-42 (62)
444 KOG1464 COP9 signalosome, subu 47.4 1.6E+02 0.0034 24.2 24.4 173 18-190 21-218 (440)
445 PF10366 Vps39_1: Vacuolar sor 47.3 91 0.002 21.4 7.5 27 305-331 41-67 (108)
446 PF14669 Asp_Glu_race_2: Putat 46.9 1.3E+02 0.0029 23.2 15.5 68 17-84 2-77 (233)
447 KOG2297 Predicted translation 46.4 1.8E+02 0.0039 24.5 18.8 68 245-322 267-340 (412)
448 PF01475 FUR: Ferric uptake re 45.7 65 0.0014 22.4 4.9 40 101-140 15-54 (120)
449 PF12796 Ank_2: Ankyrin repeat 45.6 69 0.0015 20.4 4.9 13 360-372 74-86 (89)
450 PF12926 MOZART2: Mitotic-spin 45.5 84 0.0018 20.4 7.8 43 44-86 29-71 (88)
451 KOG2659 LisH motif-containing 45.3 1.6E+02 0.0034 23.5 9.2 102 194-295 22-130 (228)
452 PF02847 MA3: MA3 domain; Int 45.0 98 0.0021 21.1 7.0 18 66-83 10-27 (113)
453 cd08326 CARD_CASP9 Caspase act 43.1 91 0.002 20.2 7.1 14 214-227 46-59 (84)
454 PF10475 DUF2450: Protein of u 41.5 2.1E+02 0.0046 23.9 10.8 114 99-223 104-222 (291)
455 KOG3636 Uncharacterized conser 41.3 2.6E+02 0.0056 24.9 14.7 149 59-209 93-271 (669)
456 PF09477 Type_III_YscG: Bacter 40.7 1.2E+02 0.0026 20.8 9.4 16 175-190 81-96 (116)
457 PRK13342 recombination factor 40.7 2.6E+02 0.0057 24.8 19.1 122 90-230 173-302 (413)
458 PRK14956 DNA polymerase III su 39.2 3E+02 0.0066 25.1 11.3 93 40-134 183-289 (484)
459 PRK13184 pknD serine/threonine 38.7 4.3E+02 0.0093 26.7 26.2 188 177-372 670-874 (932)
460 PHA03100 ankyrin repeat protei 38.6 3E+02 0.0065 24.9 11.3 235 8-257 48-304 (480)
461 KOG3677 RNA polymerase I-assoc 38.6 2.3E+02 0.0051 25.0 7.6 56 134-189 241-298 (525)
462 PF09454 Vps23_core: Vps23 cor 38.4 93 0.002 18.9 6.1 49 91-140 6-54 (65)
463 PF12926 MOZART2: Mitotic-spin 38.3 1.1E+02 0.0024 19.9 7.9 40 150-189 30-69 (88)
464 TIGR03362 VI_chp_7 type VI sec 38.0 1.5E+02 0.0033 24.9 6.6 55 312-366 222-278 (301)
465 PRK09857 putative transposase; 38.0 2.4E+02 0.0053 23.6 10.1 63 98-161 211-273 (292)
466 PF07720 TPR_3: Tetratricopept 37.9 63 0.0014 16.8 3.5 23 340-362 3-25 (36)
467 COG0790 FOG: TPR repeat, SEL1 37.7 2.4E+02 0.0051 23.4 22.5 150 71-229 54-222 (292)
468 PF04090 RNA_pol_I_TF: RNA pol 36.7 2E+02 0.0044 22.4 6.9 29 269-297 42-70 (199)
469 KOG0376 Serine-threonine phosp 36.6 1.3E+02 0.0028 26.9 6.0 104 170-278 11-115 (476)
470 PF09868 DUF2095: Uncharacteri 36.4 1.4E+02 0.0031 20.6 5.4 23 101-123 69-91 (128)
471 PRK13800 putative oxidoreducta 35.5 4.8E+02 0.01 26.3 29.6 18 56-73 633-650 (897)
472 COG4976 Predicted methyltransf 34.7 1.1E+02 0.0024 24.5 4.8 55 33-88 5-59 (287)
473 PF11768 DUF3312: Protein of u 34.5 3.8E+02 0.0082 24.8 11.6 61 27-87 412-473 (545)
474 PF04910 Tcf25: Transcriptiona 34.4 3.1E+02 0.0068 23.9 21.3 57 135-191 110-167 (360)
475 PF14669 Asp_Glu_race_2: Putat 34.4 2.2E+02 0.0048 22.1 15.9 55 273-327 137-205 (233)
476 PRK14951 DNA polymerase III su 34.3 4.2E+02 0.009 25.2 10.6 91 278-371 180-283 (618)
477 PF11123 DNA_Packaging_2: DNA 33.6 1.2E+02 0.0027 18.9 4.7 28 75-103 14-41 (82)
478 KOG0991 Replication factor C, 33.5 2.6E+02 0.0056 22.6 15.9 85 120-208 186-282 (333)
479 PF03943 TAP_C: TAP C-terminal 33.5 13 0.00028 21.2 -0.1 20 3-22 28-48 (51)
480 KOG2471 TPR repeat-containing 33.5 3.8E+02 0.0081 24.5 16.9 107 243-351 250-382 (696)
481 PRK08691 DNA polymerase III su 33.2 4.6E+02 0.0099 25.4 10.5 84 285-371 182-278 (709)
482 KOG1839 Uncharacterized protei 32.3 6E+02 0.013 26.5 12.1 28 90-117 970-997 (1236)
483 PF15297 CKAP2_C: Cytoskeleton 31.7 3.4E+02 0.0073 23.4 8.3 79 200-278 105-185 (353)
484 KOG1114 Tripeptidyl peptidase 30.7 5.7E+02 0.012 25.7 15.3 79 180-259 1213-1292(1304)
485 COG5191 Uncharacterized conser 30.6 1.8E+02 0.0039 24.6 5.6 67 21-88 105-172 (435)
486 PF04090 RNA_pol_I_TF: RNA pol 30.6 2.6E+02 0.0057 21.8 7.4 29 60-88 43-71 (199)
487 COG5191 Uncharacterized conser 30.5 2.7E+02 0.0058 23.6 6.6 31 267-297 106-136 (435)
488 PF00244 14-3-3: 14-3-3 protei 30.5 2.9E+02 0.0063 22.3 10.9 60 98-157 6-66 (236)
489 PF02847 MA3: MA3 domain; Int 30.4 1.8E+02 0.0039 19.8 8.0 21 169-189 8-28 (113)
490 COG4941 Predicted RNA polymera 30.3 3.5E+02 0.0077 23.2 10.9 118 37-157 270-394 (415)
491 KOG3364 Membrane protein invol 30.2 2.2E+02 0.0047 20.7 10.0 68 90-157 29-100 (149)
492 PF09868 DUF2095: Uncharacteri 29.9 1.9E+02 0.0041 20.0 5.6 25 169-193 67-91 (128)
493 KOG2422 Uncharacterized conser 29.7 4.7E+02 0.01 24.4 16.6 133 58-190 284-446 (665)
494 PF02607 B12-binding_2: B12 bi 29.4 1.3E+02 0.0027 18.8 4.0 30 106-135 14-43 (79)
495 KOG0687 26S proteasome regulat 29.4 3.6E+02 0.0079 23.0 15.5 174 2-177 36-230 (393)
496 PF04190 DUF410: Protein of un 29.3 3.2E+02 0.007 22.4 17.9 191 139-363 1-216 (260)
497 PF09986 DUF2225: Uncharacteri 29.3 2.9E+02 0.0063 21.9 11.6 24 134-157 171-194 (214)
498 KOG0551 Hsp90 co-chaperone CNS 29.2 3.7E+02 0.008 23.1 8.8 94 61-155 84-180 (390)
499 PF09090 MIF4G_like_2: MIF4G l 28.6 3.3E+02 0.007 22.2 8.9 104 231-335 9-124 (253)
500 PF11838 ERAP1_C: ERAP1-like C 28.4 3.6E+02 0.0078 22.7 21.6 236 135-374 45-313 (324)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-66 Score=476.28 Aligned_cols=382 Identities=18% Similarity=0.266 Sum_probs=336.5
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|.++|+.|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 67888899999998888888999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR--KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
+.|.+.++.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9998888889999999999999999999999999998876 57888888999999999999999999999999988888
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88889999999999999999999999999988888899889999999999999999999999999888888899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 319 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 319 (384)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999998888888899999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc-----------------------cCCHHHHHHHHHHHHhCCCCCCcccc
Q 016681 320 EEADKYFKIMKSHSLVPGVDIYESLVGIHLE-----------------------KGNKAKALHLCEEMVSEGLKPSTSYL 376 (384)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~a~~~~~~~~~~~~~p~~~~~ 376 (384)
++|.+++++|.+.|+.||..+|+.++..|.+ .+..++|..+|++|++.|+.||..||
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 9999999999888888898888888765432 12346788889999999999998888
Q ss_pred ccccccc
Q 016681 377 CSASTCR 383 (384)
Q Consensus 377 ~~l~~c~ 383 (384)
..++.|.
T Consensus 851 ~~vL~cl 857 (1060)
T PLN03218 851 SQVLGCL 857 (1060)
T ss_pred HHHHHHh
Confidence 8888774
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.4e-66 Score=474.54 Aligned_cols=380 Identities=20% Similarity=0.302 Sum_probs=367.0
Q ss_pred cchHHHHHHHHHHHhcCCC--------------------------------CchhhHHHHHHHHhhcCChhHHHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFS--------------------------------LSLISFNTLIHVVTKSDRNDLVWRIYQHM 49 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 49 (384)
|++++|+++|++|.+.|+. ||..+|+.++.+|++.|+++.|.++|+.|
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 6677777777777776642 68899999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH
Q 016681 50 LENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI 129 (384)
Q Consensus 50 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (384)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681 130 AYSLIVYAKVKMRNLESALVVYEEMLK--RGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG 207 (384)
Q Consensus 130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (384)
+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 999999999999999999999999986 578999999999999999999999999999999999999999999999999
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV 287 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (384)
|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.
T Consensus 704 ~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccc
Q 016681 368 GLKPSTSYLCSAST 381 (384)
Q Consensus 368 ~~~p~~~~~~~l~~ 381 (384)
|+.||..+|+.++.
T Consensus 784 Gi~pd~~tynsLIg 797 (1060)
T PLN03218 784 GIKPNLVMCRCITG 797 (1060)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999887753
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-59 Score=427.73 Aligned_cols=370 Identities=17% Similarity=0.257 Sum_probs=326.2
Q ss_pred cchHHHHHHHHHHHhcC-CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRG-FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
|++++|+++|++|...+ +.||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 78999999999998764 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.
T Consensus 181 f~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 181 FDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred HhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 99997 58899999999999999999999999999999999999999999888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888888888888888888888875 3567888888888888888888888888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHH
Confidence 8888888888888888888888888888888888888888888888888888875 367788888888888888888
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCccccccccccc
Q 016681 321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS-EGLKPSTSYLCSASTCR 383 (384)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~c~ 383 (384)
+|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++...
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 8888888888888888888888888888888888888888888876 48888888887776544
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-58 Score=420.81 Aligned_cols=364 Identities=17% Similarity=0.258 Sum_probs=308.7
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
++++.|.+++..|.+.|+.||..+||.++..|++.|+++.|.++|+.|.+ ||..+|+.++.+|++.|++++|.++|
T Consensus 137 ~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999853 78999999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
++|.+.|..|+..+|+.++.++.+.|..+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ +
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~ 288 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----K 288 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999998888888888888888888888888888888888888888888888888888888888888888888754 4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.++.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
+|++.|++++|.++|+.|.+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 88888888888888887753 57788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhh-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccccccc
Q 016681 322 ADKYFKIMKS-HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSYLCSAS 380 (384)
Q Consensus 322 a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 380 (384)
|.++|+.|.+ .|+.|+..+|+.++.+|.+.|+.++|.+++++| ++.|+..+|+.++
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll 501 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALL 501 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHH
Confidence 8888888875 578888888888888888888888888887665 5677777776554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-57 Score=427.39 Aligned_cols=367 Identities=15% Similarity=0.224 Sum_probs=285.3
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 67888999999999889999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
++|. .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus 347 ~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 9886 577889999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 888888888888888888888888888753 4556777777777777777777777777764 36667776666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFS------------------------------PNEITYSHLIGGYAKEGEIQEVLKLY 291 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (384)
+|++.|+.+.+.+++..+.+.|+. ||..+|+.+|.+|++.|+.++|.++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 655555555555555555554443 45666666666666666666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh-hCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681 292 YEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMK-SHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK 370 (384)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 370 (384)
++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++| .++
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~ 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PIT 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCC
Confidence 666666666666666666666666666666666666666 4566666666666666666666666666666666 356
Q ss_pred CCcccccccc
Q 016681 371 PSTSYLCSAS 380 (384)
Q Consensus 371 p~~~~~~~l~ 380 (384)
||..+|..++
T Consensus 655 pd~~~~~aLl 664 (857)
T PLN03077 655 PDPAVWGALL 664 (857)
T ss_pred CCHHHHHHHH
Confidence 6666665544
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-56 Score=421.04 Aligned_cols=374 Identities=17% Similarity=0.194 Sum_probs=272.6
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|+++|++|...|+.||..+|++++++|+..+++..+.+++..+.+.|..||..+++.++.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 67889999999998888888888888888888877777777777777777777777777888888888888888888888
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
++|. .||..+||.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.|
T Consensus 246 ~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 246 DRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred hcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 8775 466777888888888888888888888888887777887788877777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
|..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|.++|++|.+.++.||..+|+.++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 77777777777777777777777777664 35556677777777777777777777776666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------------
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK------------------------ 297 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------ 297 (384)
+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666666666666666666666666666666666555555555554321
Q ss_pred ------CCCC-----------------------------------------------------------------ChhhH
Q 016681 298 ------SISP-----------------------------------------------------------------TLPAY 306 (384)
Q Consensus 298 ------~~~~-----------------------------------------------------------------~~~~~ 306 (384)
++.| |..+|
T Consensus 478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 2233 34456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCCccccccccccc
Q 016681 307 TSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV-SEGLKPSTSYLCSASTCR 383 (384)
Q Consensus 307 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~c~ 383 (384)
+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|++|. +.|+.|+..+|++++.+.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 66666677777777777777777777777777777777777777777777777777777 457777777777666543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.6e-26 Score=221.73 Aligned_cols=356 Identities=14% Similarity=0.088 Sum_probs=256.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|.+.|+.+.+.. +.+..++..+...+.+.|+.++|..+++++.+.+. .+...+..++..+...|++++|..+
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHH
Confidence 367888888888887764 44677788888888888888888888888776543 3566677777888888888888888
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
++.+.... +.+...|..+...+...|++++|.+.|+++.+... .+...+..+...+.+.|++++|..+++++.+.. +
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 88877655 56677788888888888888888888888776543 256667777777888888888888888777653 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+....+ +..++..+.
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHH
Confidence 356677777777778888888888887777665 44556677777777777778888777777776543 335666677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
.++.+.|++++|...++.+.+..+ .+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 777777777777777777776543 366677777777777777777777777777664 4556667777777777777 6
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
+|...++++.+..+. +..++..+...+...|++++|...++++.+.+
T Consensus 821 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 821 RALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 677777776664333 45556666666777777777777777777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.2e-26 Score=219.61 Aligned_cols=352 Identities=12% Similarity=0.014 Sum_probs=163.8
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|...++.+.+.+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...|
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555555544432 2234444444455555555555555555444332 223444444555555555555555555
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
+++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.++++.+.+.. +.
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 5544433 333444444444455555555555555554443211 34444444445555555555555555544432 22
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
+...+..+...+...|++++|.+.|+.+...+ |+..++..+...+.+.|++++|.+.+..+.+..+. +...+..+..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~ 778 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAE 778 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33444444444555555555555555444432 22234444444445555555555555544443322 3444444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
.+...|++++|...|+.+.+..+ .+...++.+...+...|+ .+|...++++.+.. +.+..++..+...+...|++++
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555444432 244444444444444444 44555555444432 2223334444444445555555
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
|...++++.+.++. +..++..+..++.+.|++++|.+++++|+
T Consensus 856 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 856 ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55555555544333 44444445555555555555555555443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=8.6e-25 Score=189.09 Aligned_cols=306 Identities=14% Similarity=0.137 Sum_probs=245.8
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD---TIAYSLIVYAKVKMR 142 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~ 142 (384)
..+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34567788899999999988876 56677888888888899999999999988887543222 245777888888999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCchHHHH
Q 016681 143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY----DETFNLLIEGCAKAKRIEESL 218 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 218 (384)
+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988753 34677888899999999999999999999887653222 123456677788889999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 219 SYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
..++++.+.... +...+..+...+.+.|++++|...++++.+.+......+++.++.+|...|++++|...++++.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998876533 4667778889999999999999999999876443335678889999999999999999999998764
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCccc
Q 016681 299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPSTSY 375 (384)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~ 375 (384)
|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.+++|++.+
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 66677788899999999999999999988875 4788888888877664 5689999999999999999888876
Q ss_pred ccc
Q 016681 376 LCS 378 (384)
Q Consensus 376 ~~~ 378 (384)
.|+
T Consensus 356 ~c~ 358 (389)
T PRK11788 356 RCR 358 (389)
T ss_pred ECC
Confidence 653
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.3e-23 Score=180.19 Aligned_cols=303 Identities=12% Similarity=0.089 Sum_probs=253.1
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhh
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQE 106 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 106 (384)
...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456788999999999999998643 3567889999999999999999999999987542221 35678889999999
Q ss_pred cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 016681 107 ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEA 182 (384)
Q Consensus 107 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 182 (384)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 34678899999999999999999999999988754332 22456677888999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 183 NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 33456788888999999999999999999988754434567888999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHh
Q 016681 263 GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ---CGKLEEADKYFKIMKSHSLVPGVD 339 (384)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 339 (384)
. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 56667788999999999999999999999876 5888889888887764 568999999999999877777666
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=4.4e-21 Score=174.43 Aligned_cols=359 Identities=9% Similarity=-0.057 Sum_probs=280.6
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.++..++... .+...+..+..++...|++++|+..
T Consensus 140 ~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47899999999999876 56888899999999999999999999999988643 2577888899999999999999876
Q ss_pred HHHHHhCCC-----------------------------CCcHHhHHHHHH------------------------------
Q 016681 81 LDRIHGKRC-----------------------------SPMVIVNTSLIL------------------------------ 101 (384)
Q Consensus 81 ~~~~~~~~~-----------------------------~~~~~~~~~l~~------------------------------ 101 (384)
|..+...+. +++...+..+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 654332110 111001000000
Q ss_pred HH------HhhcchHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681 102 RI------IQEERIEEGMVLLKRMLRKN-MIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY 173 (384)
Q Consensus 102 ~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (384)
.. ...+++++|.+.|++....+ ..| ....+..+...+...|++++|...+++..+... .+...|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 00 11257889999999998765 223 456678888888999999999999999988632 2466888889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681 174 CEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN 253 (384)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (384)
...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|.
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998764 445678888999999999999999999999987654 6677888889999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChHHHHHHHH
Q 016681 254 GMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP------AYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
..++...+.. +.+...++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|..+++
T Consensus 454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999998764 3367889999999999999999999999988764211111 11222223344699999999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 328 IMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+..+.++. +...+..+...+.+.|++++|...|++..+.
T Consensus 533 kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 533 KALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 98886543 4567889999999999999999999998764
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3.4e-21 Score=174.65 Aligned_cols=333 Identities=11% Similarity=0.064 Sum_probs=177.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++.... |.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 334445555666666666666666554332 23334444444555666666666666665554 4445555556666666
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
.|++++|.+.++++...... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 66666666666666554222 4445555556666666666666666655444222 22222222 235556666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH----HHHHHHHHHh
Q 016681 186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ----ANGMLTLALD 261 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 261 (384)
++.+.+....++...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++ |...++.+.+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 666554432222233333445555566666666666666555432 44555555666666666553 5566666555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY 341 (384)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 341 (384)
..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+.++. +...+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 4322 45555566666666666666666666665543 223344455555666666666666666666554322 12223
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 342 ESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 342 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
..+..++...|++++|...|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33344555666666666666665543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=4.5e-21 Score=173.86 Aligned_cols=323 Identities=11% Similarity=0.010 Sum_probs=268.2
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|..+++....... -+...+..++.+....|++++|...++.+.+..+ .+...+..+...+...|++++|...+
T Consensus 56 g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 789999999999988753 4566666777888889999999999999998643 35778888899999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....+
T Consensus 134 ~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 134 EQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9999875 667889999999999999999999999988776544 33344333 34788999999999999988764444
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH----HHHHHHHHHhCCCCCChhhHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE----SLSYCEQMMSRKLLPSCSAFN 237 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~ 237 (384)
+......+..++...|++++|+..+++..+.. +.+...+..+...+...|++++ |...+++..+..+. +...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 55555666788999999999999999998765 4456778888899999999885 89999999987654 678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhc
Q 016681 238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP-AYTSLISSLCQC 316 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 316 (384)
.+...+...|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.+.+ |+.. .+..+..++...
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHC
Confidence 9999999999999999999999987543 56778888999999999999999999998764 4443 344456788999
Q ss_pred CChHHHHHHHHHHhhCCC
Q 016681 317 GKLEEADKYFKIMKSHSL 334 (384)
Q Consensus 317 g~~~~a~~~~~~~~~~~~ 334 (384)
|++++|...|++..+..+
T Consensus 366 G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 366 GKTSEAESVFEHYIQARA 383 (656)
T ss_pred CCHHHHHHHHHHHHHhCh
Confidence 999999999999987643
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=1.1e-20 Score=182.62 Aligned_cols=365 Identities=11% Similarity=0.045 Sum_probs=264.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC-CHHHH------------HHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP-NEATI------------RTLISA 67 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~ 67 (384)
.|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+..... +...+ ......
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 378999999999998874 4478889999999999999999999999998764322 11112 122445
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLI------------- 134 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------- 134 (384)
+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.... +...+..+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence 678899999999999999876 667788888999999999999999999998876432 23333222
Q ss_pred -----------------------------HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681 135 -----------------------------VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 135 -----------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344678888888888888876433 566777788889999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC--------------------------------------
Q 016681 186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR-------------------------------------- 227 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------- 227 (384)
++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 98887643 222233322222333444444444443332110
Q ss_pred -CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 016681 228 -KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY 306 (384)
Q Consensus 228 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (384)
..+.+...+..+...+.+.|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...+.. +.+..++
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~ 674 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQ 674 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHH
Confidence 11234556677788888999999999999999887443 67888889999999999999999999887653 2345566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCC--C---CHhHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCC
Q 016681 307 TSLISSLCQCGKLEEADKYFKIMKSHSLV--P---GVDIYESLVGIHLEKGNKAKALHLCEEMVS-EGLKPS 372 (384)
Q Consensus 307 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~ 372 (384)
..+..++...|++++|.++++++...... | +...+..+...+...|++++|...|++.+. .|+.|+
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 67778888999999999999998875322 1 224566667888899999999999998764 355543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-21 Score=161.89 Aligned_cols=364 Identities=15% Similarity=0.121 Sum_probs=292.7
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 80 (384)
|++++|+.+++.+.+.. +-.+..|-.+..++...|+.+.|.+.|...++. .|+... .+.+...+...|++++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 67788888888888764 336788888888888888888888888887774 455443 33344445557888888888
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|.+..... +.-...|+.|...+-..|+...|++.|++.+..+.. -...|..|...|...+.+++|...+.+.......
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 88777664 344667888888888899999999999998876432 3567888889999999999999999888775322
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
....+..+...|...|.++-|+..|++..+.. |+ ...|+.+..++-..|+..+|...+.+.....+. .....+.+
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 56678888888999999999999999988753 44 468999999999999999999999999887544 56788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCC
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGK 318 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 318 (384)
...+...|.++.|..+|....+-.+. -...++.|...|-+.|++++|+..|++.... .|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998875322 3567899999999999999999999998864 555 4578889999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc-cccccc
Q 016681 319 LEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS-YLCSAS 380 (384)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~ 380 (384)
.+.|.+.+.+.+..++. -.+.++.|...|..+|+..+|+.-+++.++ ++||.. .||-++
T Consensus 438 v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNll 497 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHH
Confidence 99999999999886543 357789999999999999999999999885 567753 444443
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.3e-18 Score=161.28 Aligned_cols=359 Identities=13% Similarity=0.043 Sum_probs=259.3
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|+.++|++++....... +.+...+..+..++...|++++|.++|+...+..+ .+...+..+...+...|++++|+..
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988632 45666788999999999999999999999887632 3566777888888999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH---------
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVY--------- 151 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~--------- 151 (384)
++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..+.|.+.+
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 99998875 66667 888888999999999999999999887544 5555555566665555555444333
Q ss_pred -------------------------------------HHHHHc-CCCCChH-HHH----HHHHHHHhcCCHHHHHHHHHH
Q 016681 152 -------------------------------------EEMLKR-GFSANSF-VYT----TFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 152 -------------------------------------~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~ 188 (384)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333322 1112111 111 113344567888899999988
Q ss_pred HHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681 189 MENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALDKGF 264 (384)
Q Consensus 189 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (384)
+.+.+.. |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|...++.+....+
T Consensus 263 ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 263 LKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred hhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 8876521 321 22224667888899999999998887654321 123455666677888999999999888876532
Q ss_pred -----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681 265 -----------SPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMK 330 (384)
Q Consensus 265 -----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 330 (384)
.|+ ...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 122 2244566677788899999999999887764 5566777888888888999999999999888
Q ss_pred hCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 331 SHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 331 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+..+. +...+...+..+...|++++|..+++++++.
T Consensus 421 ~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 421 VLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 86533 4566777777888889999999999888764
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.8e-18 Score=167.56 Aligned_cols=359 Identities=13% Similarity=0.049 Sum_probs=232.1
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC------------------C--------
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR------------------Y-------- 55 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~-------- 55 (384)
|++++|++.++.+.+.. +.+...+..+...+...|+.++|++.++++.+... .
T Consensus 161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 67778888888887764 44667777888888888888888888887654210 0
Q ss_pred ------CCHHHH---------------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc
Q 016681 56 ------PNEATI---------------------RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER 108 (384)
Q Consensus 56 ------~~~~~~---------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 108 (384)
|+.... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 110000 011334556788888888888888765 5577888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 016681 109 IEEGMVLLKRMLRKNMIH-DTIAY------------SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE 175 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (384)
+++|+..|++..+..... ....+ ......+.+.|++++|...|+++.+... .+...+..+..++..
T Consensus 319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 888888888887754322 11111 1123456677888888888888877633 355666777888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHH------------------------------------------HHHHHHhcCc
Q 016681 176 YGKIEEANCLMQEMENAGLKPYDETFNL------------------------------------------LIEGCAKAKR 213 (384)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------l~~~~~~~~~ 213 (384)
.|++++|++.|++..+.. +.+...+.. +...+...|+
T Consensus 398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 888888888888877643 122222221 2233445677
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----------------------------
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS---------------------------- 265 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------- 265 (384)
+++|.+.+++..+..+. +...+..+...+.+.|++++|...++.+.+..+.
T Consensus 477 ~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 477 WAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 88888888887776544 5566677777788888888888888777654221
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681 266 ---------------------------------------------PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 266 ---------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (384)
.+...+..+...+.+.|++++|...|++..+.. +
T Consensus 556 ~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P 634 (1157)
T PRK11447 556 PRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-P 634 (1157)
T ss_pred CchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 111122334444455566666666666666553 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.+...+..+...+...|++++|.+.++...+.... +...+..+..++...|++++|.++++++...
T Consensus 635 ~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 635 GNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 34556666666777777777777777766554322 3455556666666777777777777776654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.4e-18 Score=158.19 Aligned_cols=340 Identities=11% Similarity=0.015 Sum_probs=263.7
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|++.++...+.+ +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556677889999999999999998874 5788889999999999999999999999999886 667889999999999
Q ss_pred hhcchHHHHHHHHHHHHcCCC----------------------------C----CHHHHHHH------------------
Q 016681 105 QEERIEEGMVLLKRMLRKNMI----------------------------H----DTIAYSLI------------------ 134 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~----------------------------~----~~~~~~~l------------------ 134 (384)
..|++++|+..|......+.. | ........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766544321100 0 00000000
Q ss_pred ---------HHHH------HhcCChHHHHHHHHHHHHcC-C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 016681 135 ---------VYAK------VKMRNLESALVVYEEMLKRG-F-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY 197 (384)
Q Consensus 135 ---------l~~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 197 (384)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 0000 11257888999999988764 2 2245668888889999999999999999998764 233
Q ss_pred hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681 198 DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG 277 (384)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (384)
...|..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...|+...+..+. +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHH
Confidence 567888888899999999999999999887644 6788999999999999999999999999987533 67778888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHh------HHHHHHHHHhcc
Q 016681 278 YAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVD------IYESLVGIHLEK 351 (384)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~ 351 (384)
+.+.|++++|...|++..+.. +.+...++.+...+...|++++|...|++..+.....+.. .++.....+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998763 4457788999999999999999999999988754331111 122222334457
Q ss_pred CCHHHHHHHHHHHHhCCCCCCc
Q 016681 352 GNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 352 g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
|++++|.+++++..+.. |+.
T Consensus 522 ~~~~eA~~~~~kAl~l~--p~~ 541 (615)
T TIGR00990 522 QDFIEAENLCEKALIID--PEC 541 (615)
T ss_pred hhHHHHHHHHHHHHhcC--CCc
Confidence 99999999999988653 544
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-19 Score=150.53 Aligned_cols=335 Identities=16% Similarity=0.113 Sum_probs=267.5
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
-..+|..+...+-..|++++|+.+|+.+++...+ ....|..+..++...|+.+.|.+.|.+..+.+ +......+.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhH
Confidence 4567888888888889999999999888885332 57788888888888999999988888888764 333344445556
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (384)
.+...|+.++|...|.+.++.... -...|+.|...+-.+|+...|...|++..+.... -...|-.|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchH
Confidence 666788888888888888776432 3557888888888899999999999988876322 35678888899999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
|...|.+..... +.....+..+...|...|..+-|+..+++..+..+. =...|+.+..++-..|++.+|++.+...+.
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 999998877653 334567777888888899999999999999887543 366899999999999999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HhH
Q 016681 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG-VDI 340 (384)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~ 340 (384)
.... .....+.|...|...|.+++|..+|....+-. +--....+.|...|-++|++++|+..+++.++. .|+ ...
T Consensus 349 l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda 424 (966)
T KOG4626|consen 349 LCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADA 424 (966)
T ss_pred hCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHH
Confidence 6433 56788889999999999999999999888753 222456788999999999999999999998874 444 567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 341 YESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 341 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
++.+...|...|+.+.|.+.+.+.+.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 88899999999999999999988875
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.6e-16 Score=147.53 Aligned_cols=345 Identities=12% Similarity=0.068 Sum_probs=261.1
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
+.+..-..-.+.+....|+.++|+++|....... ..+...+..+...+...|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4566666677788899999999999999997632 3456678999999999999999999999998876 6678888899
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681 100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI 179 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (384)
...+...|++++|+..++++.+.... +.. +..+..++...|+.++|...++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 99999999999999999999987433 555 888888999999999999999999987443 555555666666666665
Q ss_pred HHHHHHHH----------------------------------------------HHHHc-CCCCChh-hHH----HHHHH
Q 016681 180 EEANCLMQ----------------------------------------------EMENA-GLKPYDE-TFN----LLIEG 207 (384)
Q Consensus 180 ~~a~~~~~----------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~ 207 (384)
++|++.++ .+.+. ...|+.. .+. ..+..
T Consensus 167 e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 167 APALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 55444333 33322 1122211 111 11334
Q ss_pred HHhcCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCC
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLL-PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP---NEITYSHLIGGYAKEGE 283 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 283 (384)
+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|...|+.+.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56778999999999999887643 332 22335778999999999999999987653221 13456667778889999
Q ss_pred HHHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681 284 IQEVLKLYYEMEYKSI-----------SPT---LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 284 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (384)
+++|..+++.+.+... .|+ ...+..+...+...|++++|++.++++....+. +...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999999886531 122 124456777888999999999999999887554 6788999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 350 EKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 350 ~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
..|++++|++.+++..+. .|+.
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~ 426 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRN 426 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCC
Confidence 999999999999998864 4664
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.1e-16 Score=144.33 Aligned_cols=364 Identities=12% Similarity=0.051 Sum_probs=258.2
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|+++.|++.|++..+....-.+..+ .++..+...|+.++|+..+++.... ..........+...+...|++++|+++
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47889999999999887422112334 8888888889999999999998732 112334444446678888999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++..+|.+.++++.+....
T Consensus 125 y~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 125 WQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 99999887 6667888888888999999999999999988764 44445544444444456666699999998887432
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHH------------------------------------------------HHHHHc
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLM------------------------------------------------QEMENA 192 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------------------------~~~~~~ 192 (384)
+...+..+..+..+.|-...|.++. +.+...
T Consensus 202 -n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 202 -SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred -CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 5555555656655555433333322 222221
Q ss_pred -CCCCCh-h----hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 016681 193 -GLKPYD-E----TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG--- 263 (384)
Q Consensus 193 -~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 263 (384)
+..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 111221 1 1123345677788899999999999988766566688888999999999999999999886643
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCC--hh-hHHHHHHHHHhcCChHHHHHHHH
Q 016681 264 --FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----------SPT--LP-AYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 264 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~~-~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
..++......|.-++...+++++|..+++++.+... .|| -. .+..++..+...|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 123444457788888999999999999999887311 122 12 33445677888999999999999
Q ss_pred HHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 328 IMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
++....+. |......+...+...|++.+|...++..... .|+.
T Consensus 441 ~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 441 DLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 99886655 7888888889999999999999999766543 5554
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=2.4e-16 Score=126.97 Aligned_cols=293 Identities=14% Similarity=0.211 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcC--Chh-HHHHHHHHHHhcC-------------------CCCCHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSD--RND-LVWRIYQHMLENI-------------------RYPNEA 59 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~-~a~~~~~~~~~~~-------------------~~~~~~ 59 (384)
|.+.++.-+++.|++.|.+.+...-..+++.-+-.+ ++. .-++.|-.|...| .+-+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 677889999999999998888888777766533222 211 1122222222211 123567
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
++..+|.++|+--..+.|.+++++......+.+..++|.+|.+-.-. ...+++.+|.+..+.||..|+|.++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 89999999999999999999999988777788999999998765432 33788999999999999999999999999
Q ss_pred hcCChHH----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCCC----ChhhHHHHHH
Q 016681 140 KMRNLES----ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE-ANCLMQEMENA----GLKP----YDETFNLLIE 206 (384)
Q Consensus 140 ~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~ 206 (384)
+.|+++. |.+++.+|++.|+.|...+|..+|..+.+-++..+ +..++.++... ..+| |...|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9997764 56778889999999999999999999998888754 55556665442 2222 3456777788
Q ss_pred HHHhcCchHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRK----LLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA 279 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (384)
.|....+.+-|.++..-+.... +.|+ ..-|..+..+.++....+.-...++.|...-.-|+..+...++++..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 8888888888887776665431 1222 23456667777788888888888888887777778888888888887
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 016681 280 KEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~ 298 (384)
-.+.++-.-++|..+...|
T Consensus 445 v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred hcCcchhHHHHHHHHHHhh
Confidence 7888877777777776555
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=4.3e-15 Score=130.25 Aligned_cols=361 Identities=13% Similarity=0.068 Sum_probs=278.8
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|.+++.+..+.. +.+...|-+|...|-+.|+.+++...+-.....+. -|...|..+.....+.|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHHHH
Confidence 388999999999999875 56889999999999999999999887755544333 3678999999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHH
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL----IVYAKVKMRNLESALVVYEEMLK 156 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~ 156 (384)
|.+..+.. +++...+---+..|-+.|+...|...|.++.+...+.|..-+.. .+..+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999987 77777777778889999999999999999998765334333333 34556677777999999888876
Q ss_pred c-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCChhhHHHHHHHH
Q 016681 157 R-GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---------------------------LKPYDETFNLLIEGC 208 (384)
Q Consensus 157 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~ 208 (384)
. +-..+...++.++..+.+...++.+......+.... +.++... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 3 334467788999999999999999999888876621 1222222 1233344
Q ss_pred HhcCchHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 209 AKAKRIEESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
...+..+....+...+.+.. +.-+...|.-+..++...|.+..|..+|..+......-+...|-.+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 55556666666666666666 3335677888999999999999999999999987555577899999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh--------CCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681 287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS--------HSLVPGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
|.+.|....... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+.+.|+.++-.
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999998764 34455666677888899999999999998643 234556666666777788899988766
Q ss_pred HHHHHHHh
Q 016681 359 HLCEEMVS 366 (384)
Q Consensus 359 ~~~~~~~~ 366 (384)
.+...|+.
T Consensus 547 ~t~~~Lv~ 554 (895)
T KOG2076|consen 547 NTASTLVD 554 (895)
T ss_pred HHHHHHHH
Confidence 66555554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.2e-14 Score=133.06 Aligned_cols=337 Identities=13% Similarity=0.075 Sum_probs=245.4
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE--ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI 100 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (384)
+.+.-.-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... +........+.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHH
Confidence 3333333445679999999999999998864 443 334 78888888999999999999988322 33344444446
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (384)
..+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 6888899999999999999998655 5677778888999999999999999999876 445555655555555567776
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH------------------------------------------
Q 016681 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL------------------------------------------ 218 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------ 218 (384)
+|++.++++.+.. +.+...+..+..++.+.|-...|.
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 7999999998865 334455555555555544433333
Q ss_pred ------HHHHHHHhC-CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 219 ------SYCEQMMSR-KLLPSC-----SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 219 ------~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
.-++.+... +..|.. ....-.+-++...++..++++.++.+...+.+....+-..+.++|...+.+++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 333333321 111221 12223456788999999999999999988866556688899999999999999
Q ss_pred HHHHHHHHHhcC-----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-----------CCCH---hHHHHHHHH
Q 016681 287 VLKLYYEMEYKS-----ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL-----------VPGV---DIYESLVGI 347 (384)
Q Consensus 287 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~ 347 (384)
|..+++.+.... .+++......|.-++...+++++|..+++.+.+..+ .|+. ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986643 123444457899999999999999999999987322 2332 234456777
Q ss_pred HhccCCHHHHHHHHHHHHhC
Q 016681 348 HLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 348 ~~~~g~~~~a~~~~~~~~~~ 367 (384)
+...|+..+|.+.++++...
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999764
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1.7e-14 Score=134.74 Aligned_cols=350 Identities=12% Similarity=0.024 Sum_probs=204.2
Q ss_pred chHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccCC---hHHH
Q 016681 3 LFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN--IRYPNEATIRTLISALCKGGQ---LQTY 77 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a 77 (384)
...+|...++.|.+.. +-+....-.+--...+.|+.++|.++|+..... ...++......++..+.+.+. ..++
T Consensus 357 ~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 357 NKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred chhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 4445556666665542 235555555555566777777777777776652 122233444466666666554 2222
Q ss_pred HHH-------------------------HHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHH
Q 016681 78 VDM-------------------------LDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA 130 (384)
Q Consensus 78 ~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 130 (384)
..+ +....... ++ +...|..+..++.. ++.++|...+.+..... |+...
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 221 11111111 33 45566666666655 66666777666665543 34333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK 210 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (384)
...+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...++...+.. +.+...+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 333344445677777777777766443 3333445555666677777777777777776643 2222222233333334
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL 290 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (384)
.|++++|...+++..+.. |+...+..+..++.+.|++++|...+++.....+. +...++.+...+...|+.++|...
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777777777776654 34566667777777777777777777777766433 556666666677777777777777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+++..+.. +-+...+..+..++...|++++|...+++..+..+. +..+.........+..+++.|.+-+++..
T Consensus 666 l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 666 LERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 77776653 334556666777777777777777777777665432 23444444555555566666666555544
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=4.1e-15 Score=127.68 Aligned_cols=283 Identities=12% Similarity=0.022 Sum_probs=205.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHhhcchHHH
Q 016681 36 SDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVN--TSLILRIIQEERIEEG 112 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 112 (384)
.|+++.|.+......+.. +++.. +........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887777665542 22333 333344557888999999999888765 3443322 2336677888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHH
Q 016681 113 MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS-------FVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
.+.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988887644 6777888888888999999999999888887544222 2334445555555566677777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 016681 186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS 265 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 265 (384)
++.+.+. .+.+......+...+...|+.++|.+++++..+.. ++.... ++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7766443 24566777888888889999999999998887743 343221 233444558888888888888877543
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777888888889999999999999988875 58888888888999999999999999887754
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.2e-14 Score=117.46 Aligned_cols=345 Identities=10% Similarity=0.122 Sum_probs=263.4
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
+-+..+|..+|..+++-...+.|.++|++..+...+.+..+||.+|.+-.-.. ..+++.+|.+....||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 45889999999999999999999999999998888889999999997654332 26788999999999999999999
Q ss_pred HHHHHhhcchHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHc----CCCC----ChHHH
Q 016681 100 ILRIIQEERIEE----GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE-SALVVYEEMLKR----GFSA----NSFVY 166 (384)
Q Consensus 100 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~----~~~~----~~~~~ 166 (384)
+.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+.+.++.. .+..++.++... .++| +...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998764 5678889999999999999999999998887764 355555555432 2332 45567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 167 TTFIGAYCEYGKIEEANCLMQEMENAG----LKPY---DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....++....+.....|+.|.-.-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888999999988888776554321 2333 245667777888888999999999999998888999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHHH-------HHHHhcC
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG-EI--------QE-----VLKLY-------YEMEYKS 298 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~~~~~~~ 298 (384)
+++....+.++-.-+++..+...|...+...-..++..+++.. .. .. |..++ .++.+..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 9999999999999999999988776555555555555555443 11 11 11111 2333333
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC-CC---CCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681 299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS-LV---PGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK 370 (384)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 370 (384)
.+....+...-.+.+.|+.++|.++|..+.+.+ -- |.......++....+..+...|..+++-|...+..
T Consensus 520 --~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 520 --WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred --CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 345677888888999999999999999985532 22 33333446677778889999999999999776543
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=3.8e-15 Score=128.63 Aligned_cols=294 Identities=14% Similarity=0.060 Sum_probs=215.6
Q ss_pred HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681 69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL 148 (384)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 148 (384)
...|+++.|.+.+.+..+.. +.....+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45799999999999887764 22344445556778888999999999999877543333334444577888999999999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhcCchHHHHHHHHHH
Q 016681 149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFN-LLIEGC---AKAKRIEESLSYCEQM 224 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 224 (384)
..++.+.+..+. +......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++....+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988543 6778889999999999999999999999998743 333332 111222 2233333344455555
Q ss_pred HhCCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681 225 MSRKLL---PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEIT-YSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 225 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (384)
.+..+. .+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 554332 3778889999999999999999999999998744322111 1111222234578889999998887763 3
Q ss_pred CCh--hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 301 PTL--PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 301 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 556788999999999999999999655544568888899999999999999999999998654
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=5e-15 Score=127.88 Aligned_cols=293 Identities=8% Similarity=-0.044 Sum_probs=202.9
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHH
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEG 112 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 112 (384)
...|+++.|.+.+....+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 46789999999988876653 44 3344455677778899999999998887653222233444457778889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 016681 113 MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT-TFIGAY---CEYGKIEEANCLMQE 188 (384)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 188 (384)
.+.++.+.+..+. +...+..+...+...|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999887644 6677888888899999999999999998887654 333331 111211 223333333344444
Q ss_pred HHHcC---CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681 189 MENAG---LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF-NEMIRRLCECGNAKQANGMLTLALDKGF 264 (384)
Q Consensus 189 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (384)
+.+.. .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 44332 1236677888888899999999999999998886544222111 1111222345777888888888777633
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 265 SPNE--ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 265 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 44 566788888899999999999999644444468888888999999999999999999988654
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=1e-14 Score=125.25 Aligned_cols=285 Identities=14% Similarity=0.071 Sum_probs=218.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHh-HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPMVIV-NTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALV 149 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 149 (384)
.|+++.|.+.+....+.. +++.. +........+.|+++.|.+.+.++.+....+...........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888766542 22333 333345558899999999999999875433222222234678889999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCchHHHHHHHH
Q 016681 150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIEGCAKAKRIEESLSYCE 222 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 222 (384)
.++.+.+.... ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999887543 7788889999999999999999999999988754322 123333443344445566666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681 223 QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT 302 (384)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (384)
.+.+.- +.++.....+...+...|+.++|..+++...+. +|+.... ++.+....++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 665432 347888899999999999999999999999885 4455322 2333345699999999999998774 455
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 303 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667888999999999999999999999985 58888889999999999999999999998764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=8.4e-18 Score=138.06 Aligned_cols=261 Identities=16% Similarity=0.115 Sum_probs=87.1
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKN-MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY 176 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (384)
.+...+.+.|++++|++++++..... .+.+...|..+...+...++.+.|.+.++++.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555556666666666665443332 1223333444444555566666666666666655333 44455555555 566
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHH
Q 016681 177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK-LLPSCSAFNEMIRRLCECGNAKQANGM 255 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 255 (384)
+++++|.+++....+.. ++...+...+..+...++++++..+++.+.... ...+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665554432 334455566666666677777777766655432 234555666666667777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681 256 LTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV 335 (384)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (384)
+++..+..+. |......++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|...|++..+..+.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7777665332 46666677777777777777777776665553 445556667777777777777777777777664433
Q ss_pred CCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 336 PGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 336 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
|+.....+..++...|+.++|.++.+++.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 66666777777777777777777766654
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.9e-13 Score=127.93 Aligned_cols=323 Identities=11% Similarity=0.044 Sum_probs=242.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcc---h
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEER---I 109 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~ 109 (384)
..+...++...+..|.+... -+......+.-...+.|+.++|.++|+...... ...+......++..|.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 34667777777777777522 255666666666788999999999999987631 12344455577777776655 2
Q ss_pred HHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681 110 EEGMVL----------------------LKRMLRK-NM-IH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS 163 (384)
Q Consensus 110 ~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 163 (384)
.++..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+.... .|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 233222 2222211 11 23 56677777777776 8888999988888766 3454
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRL 243 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 243 (384)
.....+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+..+. +...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 44444555667899999999999997654 455555667778889999999999999999887533 333333444455
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681 244 CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEAD 323 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 323 (384)
...|++++|...+++..+. .|+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5669999999999999986 4568889999999999999999999999999875 456677888888999999999999
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
..+++..+..+. +...+..+..++...|++++|...+++..+..
T Consensus 664 ~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999987654 77889999999999999999999999998643
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=5.8e-14 Score=123.34 Aligned_cols=339 Identities=14% Similarity=0.076 Sum_probs=264.0
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
.....-.....+...|++++|.+++.+.++... .+...|.+|...|-..|+.+++...+-.+...+ +.|...|..+..
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~lad 215 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 344445555566677999999999999999754 378899999999999999999999888777766 777899999999
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH----HHHHHHHHhcC
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVY----TTFIGAYCEYG 177 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~ 177 (384)
...+.|.+++|.-.|.+.++..+. +...+---...|-+.|+...|.+-|.++.+...+.+..-+ -..++.+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998644 5555555667888999999999999999987443333322 33456677788
Q ss_pred CHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC------------------------
Q 016681 178 KIEEANCLMQEMENA-GLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS------------------------ 232 (384)
Q Consensus 178 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------ 232 (384)
+-+.|.+.++..... +-..+...++.++..+.+...++.+......+......+|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999999887762 2234556788999999999999999888877765222222
Q ss_pred ---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 016681 233 ---CSAFNEMIRRLCECGNAKQANGMLTLALDKG--FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT 307 (384)
Q Consensus 233 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (384)
..+ -.++-++.+.+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 122 123334455555555555666666555 33456789999999999999999999999999876556677899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 308 SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
.+..+|...|.+++|.+.|+......+. +...-.+|...+.+.|+.++|.+.+..+.
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999986443 55666788888999999999999999975
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.1e-17 Score=137.27 Aligned_cols=259 Identities=11% Similarity=0.097 Sum_probs=66.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLENI-RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE 107 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (384)
+...+.+.|++++|+++++...... ...|...|..+.......++++.|.+.++++...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 3555555566666666654433322 11233333444444444555556666665555544 2344444444444 4555
Q ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 108 RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFVYTTFIGAYCEYGKIEEANCLM 186 (384)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (384)
++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|++++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555443332 233444445555555555555555555544321 2234445555555555555555555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 016681 187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP 266 (384)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 266 (384)
++..+.. +.|......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|...++...+..+ .
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 5555543 2234445555555555555555555555444432 22334445555555555555555555555554322 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 267 NEITYSHLIGGYAKEGEIQEVLKLYYEM 294 (384)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (384)
|+.....+..++...|+.++|.++..+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4555555555555555555555555443
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.7e-14 Score=126.35 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
+..++|.++|..+++..+. |...-|-+.-.++..|++.+|..+|.+.++.. .-...+|-.+.++|..+|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766443 66666677777777788888888888777764 234556777778888888888888888
Q ss_pred HHHhh-CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 327 KIMKS-HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 327 ~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+...+ .....+..+...|.+++.+.|.+.+|.+.+......
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 76654 344456677777888888888888877777766654
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=9.1e-14 Score=111.43 Aligned_cols=287 Identities=11% Similarity=0.030 Sum_probs=187.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV 114 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 114 (384)
-.|++.+|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++....-+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357777777777776665443 2334555556666677777777777777665335556666666677777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS-------FVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
-++++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77777766544 5566677777777777777777777777776654332 356666666655555555555666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 016681 188 EMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN 267 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (384)
....+- ..+...-..++.-+.+.|+.++|.++.++..+++..|. . ...-.+.+-++...-.+..+.-.+..+ -+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHP-ED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCC-CC
Confidence 554432 33445566666677777777777777777777665544 1 112233455666666666655554422 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
+..+.+|...|.+++.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567777777777778888888877766654 47777777777888888888877777776654
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=6e-14 Score=109.24 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=225.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHH
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD---TIAYSLIVYAKVKMRNLESA 147 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a 147 (384)
+.+.++|.+.|-+|.+.+ +.+..+.-+|.+.|.+.|+.|.|+.+...+.++.-.+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999998866 66677778888999999999999999998887632211 12334456678889999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchHHHHHHHHH
Q 016681 148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD----ETFNLLIEGCAKAKRIEESLSYCEQ 223 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (384)
+.+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998876432 4567788999999999999999999998887644432 3466666667777889999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh
Q 016681 224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL 303 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 303 (384)
..+.+.+ ++..--.+.+.....|++..|.+.++.+.+.++.--..+...|..+|.+.|+.++....+.++.+.. ++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 9887655 4555556678888999999999999999998766667788889999999999999999999988764 444
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCccccc
Q 016681 304 PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPSTSYLC 377 (384)
Q Consensus 304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~ 377 (384)
..-..+.+.-....-.+.|...+.+-... +|+...+..++..-.. .|...+-...++.|+...++-.+.+-|
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 45555555444455566666665554443 4888899988887543 455677778888887665554444433
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.5e-13 Score=110.91 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=215.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCh
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLIVYAKVKMRNL 144 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~ 144 (384)
++......+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+.++- -|..+|..++-. +..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 33444566667777777777776666555555556666778888888888888876421 156677666533 32221
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681 145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
+ +.++.+-...-.+-.+.|+..+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+-++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1122111111122355678888888999999999999999999876 344578888999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 016681 225 MSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP 304 (384)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 304 (384)
++-++. |-..|-.+.++|.-.+.+.-|+-.|++..+..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+..
T Consensus 391 vdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 998765 889999999999999999999999999988643 489999999999999999999999999998876 45668
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKS----HSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.+..|.+.+-+.++.++|...|++.++ .|...+ .....-|...+.+.+++++|.........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 899999999999999999999988765 233312 12222355567788888887765555443
No 39
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.72 E-value=3.6e-13 Score=108.08 Aligned_cols=293 Identities=13% Similarity=0.088 Sum_probs=237.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 016681 70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALV 149 (384)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 149 (384)
-.|++.+|.+...+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+....++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999987776 555667777778888999999999999999887555677777888888999999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCchHHHHHHHH
Q 016681 150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIEGCAKAKRIEESLSYCE 222 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 222 (384)
-.+++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999887554 7788889999999999999999999999999865543 456777776666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681 223 QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT 302 (384)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (384)
..... .+-++..-..++.-+.++|+.++|.++.++..+++..|+ -...-.+.+-++.+.-.+..++-.+.. +-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 66544 334667778889999999999999999999999877665 222233456788887777777665542 345
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 303 LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 303 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
+..+..|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++....-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 578899999999999999999999987764 68999999999999999999999999999875544444
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=9.8e-15 Score=124.14 Aligned_cols=288 Identities=11% Similarity=0.054 Sum_probs=224.7
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 016681 73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM--IHDTIAYSLIVYAKVKMRNLESALVV 150 (384)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 150 (384)
+..+|...|.++.... .-+..+...+.++|...+++++|.++|+.+.+... .-+...|...+.-+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678999999966553 44557778889999999999999999999987531 12667787777554321 12222
Q ss_pred H-HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 016681 151 Y-EEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL 229 (384)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (384)
+ +.+.+. -+-.+.+|-++.++|+-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+...+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233333 23378899999999999999999999999998855 23668888888888889999999999999877654
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681 230 LPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL 309 (384)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (384)
. +..+|.-+...|.+.++++.|+-.|+.+.+.++. +.+....+...+.+.|+.++|+++++++.... +-|+..--.-
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 4 4556667788899999999999999999987655 77888888889999999999999999998775 3344444445
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681 310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 371 (384)
+..+...+++++|...++++++.-++ +...+..+...|.+.|+.+.|+.-|--+.+..-++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66777889999999999999986433 56778888899999999999999988888655443
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.5e-13 Score=120.34 Aligned_cols=213 Identities=15% Similarity=0.088 Sum_probs=128.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCh------hhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681 158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---GLKPYD------ETFNLLIEGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
+-.+.+...|.+...+...|++++|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+..
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 43456666666777777777777777777665443 111221 111112223333444555555555544432
Q ss_pred CC---------------------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHH
Q 016681 229 LL---------------------------------PSCSAFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNEITYSHL 274 (384)
Q Consensus 229 ~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 274 (384)
+. .++..+..+...+.+...+..|..-|..+.+.- ..+|..+.-.|
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 11 122233333333334444444444333333221 12355555555
Q ss_pred HHHHHh------------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHH
Q 016681 275 IGGYAK------------EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYE 342 (384)
Q Consensus 275 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (384)
...|.+ .+..++|+++|.+.++.. +-|..+-|.+.-.++..|++.+|..+|.+.++.... ...+|.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~l 684 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWL 684 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceee
Confidence 554442 234677889998888775 567778888889999999999999999999986543 567899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 343 SLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 343 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
.+.++|...|++..|++.|+...+.-.+.+
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999887755433
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.5e-13 Score=104.45 Aligned_cols=291 Identities=12% Similarity=0.096 Sum_probs=223.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhhcchHH
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQEERIEE 111 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 111 (384)
-+.+.++|.++|-+|.+... .+..+-.+|.+.+-+.|..+.|+++...+..+.--+ .......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 35678999999999988532 255566788899999999999999999988643111 13345567788899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS----FVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
|+.+|..+.+.+.- -......|+..|-...+|++|.++-+++.+.+..+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999886533 4567788999999999999999999999887655432 234556666667788999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 016681 188 EMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN 267 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (384)
+..+.+ +.+...-..+.......|++++|.+.++.+.+.++..-+.+...+..+|.+.|+.++....+..+.+... .
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 988865 3333444556677888999999999999999998777788899999999999999999999999988643 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHhhC
Q 016681 268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ---CGKLEEADKYFKIMKSH 332 (384)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 332 (384)
...-..+........-.+.|...+.+-... .|+...+..+|..-.. .|...+....++.|...
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 444445555555566677777777666655 5999999999987654 34466667777777653
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.7e-14 Score=120.69 Aligned_cols=288 Identities=9% Similarity=0.030 Sum_probs=186.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVL 115 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 115 (384)
+.++|...|..+... +.-.......+..+|...+++++|..+|+.+.+... ..+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777775443 323345666677777777888888888877776531 2246666666644322 122222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681 116 L-KRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194 (384)
Q Consensus 116 ~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (384)
+ +.+.... +-.+.+|-.+.++|.-+++.+.|.+.|++..+.... ...+|+.+.+-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2333332 225667777778888788888888888777765222 56777777777777777888888887765432
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016681 195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHL 274 (384)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (384)
+-+-..|--+...|.+.++++.|.-.|+...+-++. +......+...+.+.|+.++|+++++++...... |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 112233444556677777888888878777776655 5666666777777778888888888877765444 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 275 IGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
+..+...++.++|+..++++++. ++-+..+|-.+...|.+.|+.+.|+.-|--+.+.++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 55556677888888888887765 23445566667777888888888887777777655444
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=1.6e-11 Score=104.73 Aligned_cols=354 Identities=13% Similarity=0.062 Sum_probs=241.8
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHML----ENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
|+.|..+++..++. ++-+...|-+....=-.+|+.+...+++++-+ ..|+..+...|..=...|-..|.+-.+..
T Consensus 422 YenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 45566666666554 45566666655555555666666655554432 34555566666666666666666666666
Q ss_pred HHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 80 MLDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 80 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
+.......|+.. -..+|..-...|.+.+.++-|..+|...++--. -+...|......--..|..++...+|++....
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666666555332 245666666667777777777777777766532 24555665555555567777777777777766
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH
Q 016681 158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN 237 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (384)
++-....|-...+.+-..|+...|..++....+.. +-+...|-.-+..-..+.+++.|..+|.+.... .|+...|.
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 33355566666677777788888888887777654 335567777777777778888888888777664 35666666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
.-+...--.++.++|.+++++.++. ++.-...|..+.+.+.+.++++.|...|..-.+. ++-.+..|-.|...--+.|
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 6666666677888888888777775 2323556777777777888888888877766554 3445566676777777888
Q ss_pred ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 318 KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.+-.|..++++.+-.++. +...|...|+.-.+.|..+.|..++.+.++
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999998887776 788899999999999999999888777664
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=9.1e-12 Score=106.24 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=169.2
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...|......=-..|..+....++++....-. -....|.......-..|++..|..++....+.. +.+..+|-.-+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 334444444333344444444444444444311 133333333334444455555555555544443 334444544444
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (384)
.-..+.+++.|..+|.+.... .|+...|..-++..--.++.++|.+++++..+. ++.-...|-.+...+-+.++++.
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHH
Confidence 445555555555555544432 233344433333333444555555555444443 11122333344444444444444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
|.+.|..-.+. ++-....|..+...--+.|.+-.|..+++...-+++. +...|-..|+.-.+.|..+.|..++.++++
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444332221 1122233444444444444555555555555444443 444555555555555555555555555444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY 341 (384)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 341 (384)
. ++.+...|..-|....+.++-....+.+++ ...|+.+.-.+...+....+++.|.+.|.+..+.+.. +..+|
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~w 854 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAW 854 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHH
Confidence 3 222344444444444444433322222221 2346667777788888888999999999999987655 67888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 342 ESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 342 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
..+...+.+.|.-++-.+++......
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 88889999999888888888887654
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=9.5e-12 Score=102.20 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=209.3
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE-ATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
+++.+|..+|+..+.-. ..+...|...+.+=.+++....|..+++..+.. -|-+ ..|-..+.+=-..|++..|.++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 57788999999998866 448888888899999999999999999998875 2333 2344455555567889999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GF 159 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~ 159 (384)
|++...- .|+...|++.+..=.+.++++.|..+|++.+-. .|+..+|......-.+.|+...+..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9987754 789999999999988999999999999988764 478888887777777788888888777776543 11
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------HcCC
Q 016681 160 -SANSFVYTTFIGAYCEYGKIEEANCLMQEME--------------------------------------------NAGL 194 (384)
Q Consensus 160 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~~~~ 194 (384)
..+...+.+....-.++..++.|.-+|.-.. ..+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 0112223333333233333333333332222 111
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh-hHH--------HHHHHHHhcCChHHHHHHHHHHHhc---
Q 016681 195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS-AFN--------EMIRRLCECGNAKQANGMLTLALDK--- 262 (384)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~--- 262 (384)
+.|-.+|-..+..-...|+.+...++|+..+..-++.+.. .|. -.+-.-....+.+.+.++++..++.
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 2344455555555556677777777777766543221111 111 1111112334555555555444432
Q ss_pred ---------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681 263 ---------------------------------GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL 309 (384)
Q Consensus 263 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (384)
|..|-..+|...|..-.+.++++.+..++++..+.+ +-|..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 223444444444444444555555555555555443 2334444444
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCC-CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 310 ISSLCQCGKLEEADKYFKIMKSHS-LVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
...-...|+.+.|..+|+-.++.. +......|...|.--...|.++.|..+++++++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 444445555555555555554421 1112333444444445555555555555555543
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.9e-11 Score=100.45 Aligned_cols=336 Identities=10% Similarity=0.049 Sum_probs=232.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
+|+...|.++|+...+- .|+..+|++.+..=.+.+..+.|..+|+..+- +.|+..+|......=.+.|.+..|..+
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 58889999999988876 69999999999999999999999999999886 458999999988888899999999999
Q ss_pred HHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC----------------------------------
Q 016681 81 LDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---------------------------------- 124 (384)
Q Consensus 81 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------- 124 (384)
|+.....-- ..+...+.+....=.++..++.|.-+|+-.+..=+
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988765310 11233344444444455566666666665544311
Q ss_pred ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HHHHHHH--------HHHHhcCCHHHHHHH
Q 016681 125 ---------IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS--FVYTTFI--------GAYCEYGKIEEANCL 185 (384)
Q Consensus 125 ---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~ 185 (384)
+.|-.+|-..++.-...|+.+...++|+..... ++|-. ..|...| -.-....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 113334444455555556666666666666654 33211 1111111 111234566666677
Q ss_pred HHHHHHcCCCCChhhHHHHHHHH----HhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 186 MQEMENAGLKPYDETFNLLIEGC----AKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
|+...+. ++....||..+--.| .+..+...|.+++...+. .-|-..+|...|..-.+.++++.+..+++..++
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7666652 233334554443333 345567777777776654 456777888888888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhH
Q 016681 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS-ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDI 340 (384)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 340 (384)
.++. +..+|......-...|+.+.|..+|.-..+.. +......|...|.--...|.++.|..+++++.+.. +...+
T Consensus 466 ~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kv 542 (677)
T KOG1915|consen 466 FSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKV 542 (677)
T ss_pred cChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchH
Confidence 8655 78889998888889999999999999887653 23334567777777778999999999999999863 34456
Q ss_pred HHHHHHH
Q 016681 341 YESLVGI 347 (384)
Q Consensus 341 ~~~l~~~ 347 (384)
|.++..-
T Consensus 543 WisFA~f 549 (677)
T KOG1915|consen 543 WISFAKF 549 (677)
T ss_pred HHhHHHH
Confidence 7766544
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.4e-13 Score=110.94 Aligned_cols=186 Identities=16% Similarity=0.195 Sum_probs=116.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681 175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANG 254 (384)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 254 (384)
..|++++|.+.|.+....+..-....|+.-+ .+-..|+.++|+..|-++...- .-+..+...+...|....++.+|.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4566777777777766554322223333322 3445667777777776654431 1255566666677777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681 255 MLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL 334 (384)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 334 (384)
++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+--.. ++-+..+...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 77666554 4456777777777777777777777765543332 455666777677777777777777777776543 4
Q ss_pred CCCHhHHHHHHHH-HhccCCHHHHHHHHHHHHh
Q 016681 335 VPGVDIYESLVGI-HLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 335 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~ 366 (384)
+|+..-|..++.. +.++|++++|.++++...+
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6677777766544 4457777777777776654
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.4e-12 Score=105.11 Aligned_cols=354 Identities=12% Similarity=0.047 Sum_probs=243.5
Q ss_pred cchHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLS-LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
|++++|++.+.+..+. .|+ +..|.....+|...|+|++..+--...++. .|+ +..+..-.+++-..|++++|+.
T Consensus 129 kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 6889999999999987 567 778888888899999999988887777764 444 4466666778888888888755
Q ss_pred HHHHHH------hC-------------------------C--CCCcHHhHHHHHHHHHhh--------------------
Q 016681 80 MLDRIH------GK-------------------------R--CSPMVIVNTSLILRIIQE-------------------- 106 (384)
Q Consensus 80 ~~~~~~------~~-------------------------~--~~~~~~~~~~l~~~~~~~-------------------- 106 (384)
=..-.- .. + +-|+.....+....+...
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 333211 00 0 123333333322222110
Q ss_pred -----c---chHHHHHHHHHHHHc-CCCC-----CH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHH
Q 016681 107 -----E---RIEEGMVLLKRMLRK-NMIH-----DT------IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVY 166 (384)
Q Consensus 107 -----~---~~~~a~~~~~~~~~~-~~~~-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 166 (384)
+ .+..|.+.+.+-... ...+ |. .+.......+.-.|+.-.|..-|+...+.... +...|
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~ly 363 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLY 363 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHH
Confidence 0 111111111111000 0001 11 11111111233457788888888888877444 33347
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681 167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (384)
--+...|....+.++..+.|++..+.+ +-++.+|..-.+.+.-.+++++|..=|++.++.++. +...|-.+.-+.-+.
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence 778888999999999999999998876 456677877777788888999999999999887655 566666677777788
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCChh--hHHHHHHHHHhcCCh
Q 016681 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----SPTLP--AYTSLISSLCQCGKL 319 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~--~~~~l~~~~~~~g~~ 319 (384)
+.+++++..|++..++ ++..+..|+.....+...++++.|.+.|+...+... ..+.. +-..++..- -.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 9999999999999887 455788999999999999999999999998876521 11222 222233222 34899
Q ss_pred HHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 320 EEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
..|..++++..+.+++ ....+..|...-.+.|+.++|+++|++..
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999997766 56678899999999999999999999854
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-11 Score=100.26 Aligned_cols=258 Identities=16% Similarity=0.087 Sum_probs=206.0
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcC
Q 016681 100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 177 (384)
..++-.....+++.+-...+...|++-+...-+....+.-...|++.|+.+|+++.+..+- -|..+|+.++-+-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455556677888888888888888766655555566667788999999999999887321 15667776664433222
Q ss_pred CHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 178 KIE-EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML 256 (384)
Q Consensus 178 ~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (384)
+.. -|..++ . -....| .|...+.+-|+-.++.++|...|++..+.++. ....|..+..-|...++...|..-+
T Consensus 314 kLs~LA~~v~-~--idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVS-N--IDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHH-H--hccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 211 111111 1 112334 78888899999999999999999999998766 6778999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 257 TLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
+++.+-++. |-..|-.|.++|.-.+.+.=|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|++....|-.
T Consensus 388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 999987544 88999999999999999999999999998874 568899999999999999999999999999987644
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 337 GVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 337 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
+...+..|...|-+.++.++|...+++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 668899999999999999999999988765
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=3.7e-11 Score=99.17 Aligned_cols=224 Identities=14% Similarity=0.025 Sum_probs=178.3
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (384)
.+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|++..+.+.. |+.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 344578889999999999987665433 3777778899999999999999999887554 77788888888888899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
|..=|++..... +-+...|..+.-+..+.+.+++++..|++..++- +..+..|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998765 4455677777777788899999999999998874 34788999999999999999999999999886
Q ss_pred cCCC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 262 KGFS-------PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 262 ~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.... +.+.+.-.++..- -.+++..|.+++++..+.. +-....|..|.+.-.+.|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4222 1111112222221 3489999999999998875 33457899999999999999999999998765
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.1e-11 Score=111.39 Aligned_cols=268 Identities=11% Similarity=-0.009 Sum_probs=183.6
Q ss_pred CcHHhHHHHHHHHHh-----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 016681 91 PMVIVNTSLILRIIQ-----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV---------KMRNLESALVVYEEMLK 156 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 156 (384)
.+...|...+++... .+++++|.+.|++..+.... +...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445555555555322 24567889999998876543 4555655555443 22447889999999888
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH
Q 016681 157 RGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF 236 (384)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 236 (384)
.... +...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7443 67778888888889999999999999988865 444567788888899999999999999999887655 33333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 016681 237 NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC 316 (384)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (384)
..++..+...|++++|...++++.....+-++..+..+..++...|+.++|...+.++.... +.+....+.+...+...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 34444566788999999999888765433345567778888889999999999998876542 22333445555666666
Q ss_pred CChHHHHHHHHHHhhC-CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 317 GKLEEADKYFKIMKSH-SLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 317 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
| +.|...++.+.+. .-.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6 4777777776652 112222223 33445566777666666 7777654
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=5.1e-12 Score=113.44 Aligned_cols=268 Identities=12% Similarity=-0.017 Sum_probs=189.7
Q ss_pred CCchhhHHHHHHHHh-----hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 016681 20 SLSLISFNTLIHVVT-----KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALC---------KGGQLQTYVDMLDRIH 85 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 85 (384)
+.+...|...+++.. ..+.+++|...|++..+..+. +...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 356666666666532 234689999999999886332 3555655554443 2345889999999999
Q ss_pred hCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHH
Q 016681 86 GKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFV 165 (384)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 165 (384)
+.+ +.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 887 678888988988999999999999999999987643 6677888889999999999999999999887443 2233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 016681 166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLC 244 (384)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 244 (384)
+..++..+...|++++|...+++..... .| +...+..+..++...|+.++|...+.++...... +....+.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHh
Confidence 3344555677899999999999987654 34 3445677778888999999999999887665322 3445556666677
Q ss_pred hcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 245 ECGNAKQANGMLTLALDKG-FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
..| +.+...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777665421 12222222 33344556777766666 7777654
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=8.4e-11 Score=98.79 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=204.6
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF 169 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 169 (384)
..++........-+...+++.+..++.+.+.+.. ++....+..-|.++.+.|+..+-..+=.++.+. .+..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3455555666667778888999999999888764 335556666666888888888888777777776 34467788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA 249 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (384)
.--|...|+..+|.+.|.+....+- .=...|..+...|+-.+..++|+..+...-+.-+. ....+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccH
Confidence 8888888999999999988765431 12357888888888888899998888776654221 111223344557778889
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHhcCChHHHH
Q 016681 250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK------SISPTLPAYTSLISSLCQCGKLEEAD 323 (384)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~ 323 (384)
+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|+..... ....-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998888763 337777777777777788888999888876522 11123456788888899999999999
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 016681 324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSY 375 (384)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 375 (384)
..+++......+ +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 999988886555 78888888888999999999999998877 46677643
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.9e-11 Score=98.05 Aligned_cols=200 Identities=13% Similarity=0.042 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4455556666666666766666666665544 444556666666666667777777766666655432 44555556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681 138 KVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE 216 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (384)
+...|++++|.+.++....... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666777777777766665321 1233445556666667777777777776666543 2234456666666667777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
|...+++..+.. +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777666552 23445555566666667777777766665544
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=2.4e-11 Score=97.44 Aligned_cols=202 Identities=15% Similarity=0.114 Sum_probs=142.9
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI 170 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 170 (384)
.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 34566677777788888888888888887765422 556677777778888888888888887776643 2556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681 171 GAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA 249 (384)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (384)
..+...|++++|.+.+++....... .....+..+...+...|++++|...+.+..+..+. +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 7788888888888888877664221 22345566667777788888888888887766433 455677777778888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681 250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY 296 (384)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (384)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877765 234556666677777777888888877776654
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=8.7e-12 Score=109.78 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=146.9
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 9 DVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
+++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|..|.......+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677788889999999999999999999998888 8888887777778888888888888888777654
Q ss_pred CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHH
Q 016681 89 CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GFSANSFVYT 167 (384)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 167 (384)
.|...+|..|..+|...|+... ++..++ -...+...+...|.-.....++..+.-. +.-||. .
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~ 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---E 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---H
Confidence 6778899999999999988765 222222 1111222223333322222222221111 111221 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAG-LKPYDETFNLLIEGCAKAK-RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
..+......|-++.+++++..+.... ..| +..+++.+.... .+++...+.+...+ .|++.+|...+.+-..
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 22222333444444444444332211 001 111122222221 12222222222222 3455555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
.|+.+.|..++..|.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555555555555555555544444433 4555555555555555555555555555554444433
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=3.7e-10 Score=98.39 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=163.0
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh----
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE---- 106 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 106 (384)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ |.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4456667777777777654433 32234445556666777777777777777777766 55555565555555222
Q ss_pred -cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681 107 -ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL-ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC 184 (384)
Q Consensus 107 -~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 184 (384)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 23555666666665543 2222222221111111122 2344444555555543 345555555554444444444
Q ss_pred HHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 016681 185 LMQEMENA----G----------LKPYD--ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGN 248 (384)
Q Consensus 185 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (384)
++...... + -+|+. .++..+...|...|++++|++++++.++..+. .+..|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 44444321 1 12333 23344556666777777777777777776533 35666666777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH--------HHHHHHHHhcCChH
Q 016681 249 AKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY--------TSLISSLCQCGKLE 320 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~ 320 (384)
+.+|...++........ |...-+..+..+.+.|++++|.+++......+..|-...+ .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777766544 6666666667777777777777777766555432322111 33445666777777
Q ss_pred HHHHHHHHHh
Q 016681 321 EADKYFKIMK 330 (384)
Q Consensus 321 ~a~~~~~~~~ 330 (384)
.|++.|..+.
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 7766665443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=4.5e-12 Score=111.53 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=196.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681 44 RIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777899999999999999999999999888 9998888887888899999999888888877765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHH
Q 016681 124 MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN-AGLKPYDETFN 202 (384)
Q Consensus 124 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 202 (384)
.|...+|..|..+|...||+.. |+...+ ....+...+...|.-.....++..+.- .+..||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 5788899999999999999876 322222 222334445555555554555544322 233444332
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG 282 (384)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (384)
.+......|-++.+++++..+...... .+... +++-+.... .-.+++........-.|++.+|..++.+-...|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 233344456777777777666443211 11111 233332222 233344433333222589999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 353 (384)
+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+.-.+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999999988888876 78888899999999999999999999887777777554
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=3.4e-10 Score=98.62 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=209.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 016681 64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK--- 140 (384)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 140 (384)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345668899999999999886544 3555677778889999999999999999999998743 44445555544422
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681 141 --MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI-EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES 217 (384)
Q Consensus 141 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (384)
..+.+...++++++...- |.......+.-.+..-..+ ..+..++..+...|+ | .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHHH
Confidence 235677888888887653 3333332222222221223 345666777788886 4 4577777667655555555
Q ss_pred HHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 016681 218 LSYCEQMMSR----K----------LLPSC--SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE 281 (384)
Q Consensus 218 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (384)
..++...... + -.|+. .++..+.+.|-..|++++|...++..+++.+. .+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 5555554322 1 12333 24466678889999999999999999988433 478899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHh------HH--HHHHHHHhccCC
Q 016681 282 GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVD------IY--ESLVGIHLEKGN 353 (384)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~ 353 (384)
|++.+|.+.++..++.. .-|...-+-.+..+.++|++++|.+++..+...+..|... .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999886 3577777778889999999999999999998866444322 22 345678999999
Q ss_pred HHHHHHHHHHHHh
Q 016681 354 KAKALHLCEEMVS 366 (384)
Q Consensus 354 ~~~a~~~~~~~~~ 366 (384)
+..|++-|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=9.7e-12 Score=97.41 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 016681 128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETF-NLLIE 206 (384)
Q Consensus 128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 206 (384)
-.--+.+.++|.+.|-+.+|.+-++...+. .|-+.||..|-++|.+..+++.|+.++.+-.+. .|-.+|| .-+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 333467889999999999999999988876 457778999999999999999999999988775 3444454 45667
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
.+-..++.++|.++++...+.... +......+...|.-.++++-|+..++++...|+. ++..|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 788889999999999999887654 7777778888888999999999999999999987 89999999999999999999
Q ss_pred HHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 287 VLKLYYEMEYKSISPT--LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
++.-|.+....--.|+ ..+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9999999877643344 345666778888899999999999999887655 6788999999999999999999999998
Q ss_pred HhC
Q 016681 365 VSE 367 (384)
Q Consensus 365 ~~~ 367 (384)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 754
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=5.5e-12 Score=98.75 Aligned_cols=230 Identities=16% Similarity=0.083 Sum_probs=136.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
+.+...|.+.|.+.+|...|+.-.+. .|-+.+|..|.+.|.+..+...|+.++.+-.+.- +-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45556666666666666666665544 3445566666666666666666666666655441 21333334455556666
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++.+.|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666665542 22444444555556666666666666666666663 34455666666666666666666666
Q ss_pred HHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 222 EQMMSRKLLP--SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 222 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
.+....--.| -..+|..+-......||+..|.+.|+....++.. +...++.|...-.+.|++++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6655432222 2345666666666667777777777766665433 4566666666666777777777777666544
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.5e-11 Score=97.43 Aligned_cols=277 Identities=15% Similarity=0.136 Sum_probs=131.7
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HH-hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR-II-QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
+.++|+++.|+++++-+.+.+-..-...-+.|-.. |. --.++..|.+.-+..+..+- -+......-.+.....|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence 45566666666666555443322222222222111 11 12344455555444443211 12222222222333456666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+|.+.+.+.....-.-....|| +.-.+-..|+.++|++.|-++... +..+......+.+.|-...++.+|++++.+..
T Consensus 508 ka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 6666666555542111111222 112334556666666665554332 12333445555555555556666666655554
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh
Q 016681 226 SRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA 305 (384)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 305 (384)
.. ++.|+...+.+...|-+.|+-.+|.+.+-.-.+. ++-+..+...|...|....-+++++..|++..- +.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 43 2235555666666666666666655554433332 233555555555555555556666666655432 3456666
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681 306 YTSLISSL-CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG 352 (384)
Q Consensus 306 ~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 352 (384)
|..++..| .+.|++.+|.++++..... ++-|.....-|++.+...|
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 65555433 3456666666666655543 2335555555555555444
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=3.7e-09 Score=90.56 Aligned_cols=353 Identities=14% Similarity=0.166 Sum_probs=221.4
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
+|+-++|.+..+.-.+..+ .+.+.|+.+.-.+....++++|++.|......+. .|...+.-+.-.-++.++++.....
T Consensus 54 lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4677777777777766543 3777788877777777888888888888877543 3566666666666667777777766
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHH
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN-MIHDTIAYSLIV------YAKVKMRNLESALVVYEE 153 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~ 153 (384)
-.+..+.. +.....|..+..++.-.|+...|..++++..+.. ..|+...+.... ....+.|..+.|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 66666654 4456677788888888888888888888887764 245555554332 234566777777777655
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCchHHHH-HHHHHHHhC----
Q 016681 154 MLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLI-EGCAKAKRIEESL-SYCEQMMSR---- 227 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~---- 227 (384)
-... +.-....-..-...+.+.++.++|..++..+.... ||...|...+ .++.+..+.-++. .+|....+.
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 4433 22122233445667788889999999998888764 6655554444 3333232222222 444444332
Q ss_pred ------------------------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh--------cC------
Q 016681 228 ------------------------------KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALD--------KG------ 263 (384)
Q Consensus 228 ------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~------ 263 (384)
|++ .++..+...|- ++..+- +++++.. .|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCccc
Confidence 211 11222222221 111111 2222211 00
Q ss_pred ----CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 264 ----FSPNEITYS--HLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 264 ----~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
-+|+...|+ .++..+-+.|+++.|...++...++ .|+ +..|..-.+.+...|++++|..++++..+.+. +
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-a 437 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-A 437 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-h
Confidence 145555444 4566777889999999999888876 343 33455555788889999999999998888653 3
Q ss_pred CHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 016681 337 GVDIYESLVGIHLEKGNKAKALHLCEEMVSEGL 369 (384)
Q Consensus 337 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 369 (384)
|...-..-+....+.++.++|.+++....+.|.
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 555444666667788889999998888887775
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=7.2e-10 Score=93.32 Aligned_cols=285 Identities=11% Similarity=0.043 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
+......-..-+-..+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++++..+. ...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44555555666777899999999999999887 888888888888999999988888888888887544 7788998988
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681 137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE 216 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (384)
.|.-.|...+|.+.|.+....... -...|-...+.|.-.|..++|...+...-+.= +-....+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 888899999999999988765332 34678889999999999999999998776531 1111122223345778899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681 217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK----GF--SPNEITYSHLIGGYAKEGEIQEVLKL 290 (384)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (384)
|.++|.+.....+. |+...+-+.-.....+.+.+|...|+..... +. ..-..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999999887544 7888888888888889999999999887731 10 11345688899999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681 291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (384)
+++..... +.+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99998874 67889999999999999999999999998876 5677766666665444
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=5e-13 Score=77.56 Aligned_cols=49 Identities=45% Similarity=0.852 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=7.2e-10 Score=95.55 Aligned_cols=239 Identities=22% Similarity=0.207 Sum_probs=175.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-
Q 016681 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-----GF-SANSF-VYTTFIGAYCEYGKIEEANCLMQEMENA-----G- 193 (384)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 193 (384)
-..+...+...|...|+++.|..++....+. |. .|... ..+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666889999999999999999887654 21 12222 2344677899999999999999988642 2
Q ss_pred CCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc---
Q 016681 194 LKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR-----KLL-PS-CSAFNEMIRRLCECGNAKQANGMLTLALDK--- 262 (384)
Q Consensus 194 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 262 (384)
..| -..+++.|..+|.+.|++++|...++...+- +.. |. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 112 2356777778899999999988888776432 111 11 234667778889999999999999876542
Q ss_pred CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 263 GFSP----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SI---SPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 263 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
-+.+ -..+++.|...|...|++++|.++++++... +. .-....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1222 2467899999999999999999999987643 11 11234678888999999999999999987543
Q ss_pred ----CCCC-C-CHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 332 ----HSLV-P-GVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 332 ----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
.|+. | ...+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 2 24678899999999999999999988876
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.5e-13 Score=76.79 Aligned_cols=50 Identities=26% Similarity=0.446 Sum_probs=37.8
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK 70 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (384)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777654
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=5.7e-08 Score=83.49 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcC
Q 016681 177 GKIEEANCLMQEMENAGLKPY------DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS---CSAFNEMIRRLCECG 247 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 247 (384)
|+..+-...+.+..+. +.|. ...|..+...|-.+|+.+.|..+|++..+...+.- ..+|......-.++.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4555666666665543 1121 14577788888889999999999999887654422 345555666666778
Q ss_pred ChHHHHHHHHHHHhcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681 248 NAKQANGMLTLALDKGF----------SP-------NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI 310 (384)
Q Consensus 248 ~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (384)
+++.|.++++......- .| +...|..+++.-...|-++....+|+++.+..+.......| ..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HH
Confidence 88888888877653211 11 33456666666667788888888888888776533222222 23
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCC-HhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCC
Q 016681 311 SSLCQCGKLEEADKYFKIMKSHSLVPG-VDIYESLVGIHLE---KGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
..+-...-++++.+++++-+..-.-|+ ...|+..+.-+.+ ..+.+.|..+|++.++ |.+|.
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 333455567777777777665433333 3456666655543 2357788888888877 55554
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=3.1e-08 Score=85.07 Aligned_cols=355 Identities=14% Similarity=0.104 Sum_probs=236.2
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
+++...+++.+.+.+ +.+-...+.....-.+...|+-++|......-.+..+. +.+.|..+.-.+....++++|+..|
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHH
Confidence 456666777777766 33445555555555677788999999888887776553 7788999888888889999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FS 160 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~ 160 (384)
+.....+ +.|..+|.-+.-.-++.++++.....-.++.+.... ....|..+..+..-.|+...|..++++..+.. ..
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999887 788999999988888999999888888888776433 45567777788888999999999999988764 34
Q ss_pred CChHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh
Q 016681 161 ANSFVYTTFI------GAYCEYGKIEEANCLMQEMENAGLKPYDET-FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC 233 (384)
Q Consensus 161 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (384)
|+...+.... ....+.|..+.|.+.+......- .|... --.-...+.+.++.++|..++..+...+ ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5666655433 34566788888888877654421 22222 2334456778899999999999999876 454
Q ss_pred hhHHH-HHHHHHhcCChHHHH-HHHHHHHh----------------------------------cCCCCCHHHHHHHHHH
Q 016681 234 SAFNE-MIRRLCECGNAKQAN-GMLTLALD----------------------------------KGFSPNEITYSHLIGG 277 (384)
Q Consensus 234 ~~~~~-l~~~~~~~~~~~~a~-~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~ 277 (384)
..|.. +..++.+-.+.-++. .+|....+ .|+++ ++..+...
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 44443 344443222222222 44444333 22221 22222222
Q ss_pred HHhcCCHHHHHHHHHHHHh----cC----------CCCChhhH--HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH
Q 016681 278 YAKEGEIQEVLKLYYEMEY----KS----------ISPTLPAY--TSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY 341 (384)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 341 (384)
|-.-...+-..++...+.. .| -+|+...| -.+++.+-+.|+++.|..+++..+++-+. -...|
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly 408 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELY 408 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHH
Confidence 2211111111111111111 11 13444433 44667788999999999999999886422 23455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 342 ESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 342 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
..=.+.+...|..++|..++++..+.+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 566688999999999999999998754
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.9e-09 Score=84.32 Aligned_cols=300 Identities=11% Similarity=0.022 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHc--cCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 59 ATIRTLISALCK--GGQLQTYVDMLDRIHGK-RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 59 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
.+....+.+++. .++...+...+-.+... -++.|+.....+...+...|+.++|...|++....++. +........
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya 273 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYA 273 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHH
Confidence 333334444333 34444444444333322 24678889999999999999999999999988765322 222233333
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (384)
-.+.+.|+++....+...+.... +.+...|-.-.......++++.|+.+-++..+.+ +.+...+..-...+...++++
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 34567888888888877776542 1244445445555667788999999988887755 334455655566778889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHH
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI-GGY-AKEGEIQEVLKLYYE 293 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~ 293 (384)
+|.-.|+..+...+. +...|.-++.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+ .....-++|.+++++
T Consensus 352 ~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 999999988776433 6789999999999999999998887776654 233555655552 222 233445788888888
Q ss_pred HHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 294 MEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 294 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.... .|+ ....+.+...+...|..+.++.++++... ..||....+.|...+...+.+++|.+.|...+..
T Consensus 430 ~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 430 SLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7765 344 34567777888999999999999998876 3578888999999999999999999988887653
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=1e-07 Score=83.73 Aligned_cols=361 Identities=12% Similarity=0.049 Sum_probs=213.2
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHH-ccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALC-KGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~~~~~~a~~ 79 (384)
|+++.+.+.|++....-+ .....|+.+...+...|.-..|..+++........|+.. .+...-..|. +.+.++++++
T Consensus 337 g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegld 415 (799)
T KOG4162|consen 337 GQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLD 415 (799)
T ss_pred HHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHH
Confidence 445555555555443321 244455555555555555555555555443332223222 2222222222 2244555554
Q ss_pred HHHHHHhC--C--CCCcHHhHHHHHHHHHh-----------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681 80 MLDRIHGK--R--CSPMVIVNTSLILRIIQ-----------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL 144 (384)
Q Consensus 80 ~~~~~~~~--~--~~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 144 (384)
+-.++... + -......|..+.-+|.. .....++++.+++..+.+.. |+...-.+.--|+..+++
T Consensus 416 YA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l 494 (799)
T KOG4162|consen 416 YAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQL 494 (799)
T ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhH
Confidence 44444331 0 01112233333333321 11234566677777665543 333333344467778899
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC------------------CCChhhHHHHH
Q 016681 145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA-GL------------------KPYDETFNLLI 205 (384)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------------------~~~~~~~~~l~ 205 (384)
+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+..... |. .....|...++
T Consensus 495 ~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 495 TSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 999999999888766668888888888888899999999888766543 11 00012222222
Q ss_pred HHHHh---------cC--------------chHHHHHHHHHH--------HhCC---------CC--CC------hhhHH
Q 016681 206 EGCAK---------AK--------------RIEESLSYCEQM--------MSRK---------LL--PS------CSAFN 237 (384)
Q Consensus 206 ~~~~~---------~~--------------~~~~a~~~~~~~--------~~~~---------~~--~~------~~~~~ 237 (384)
..+-. .| +..++.+....+ ...+ .. |+ ...|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 22210 00 011111111110 0000 00 11 11234
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
.....+.+.+..++|...+.+..... +.....|......+...|..++|.+.|......+ +-+.....++..++.+.|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhC
Confidence 55566777788888887777776653 3356667777777888999999999999888764 345667888999999999
Q ss_pred ChHHHHH--HHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 318 KLEEADK--YFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 318 ~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+...|.. ++..+.+.++. +...|..+...+.+.|+.+.|.+.|+...+.
T Consensus 733 ~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 8888888 99999998866 8899999999999999999999999998764
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=4.5e-09 Score=86.72 Aligned_cols=96 Identities=11% Similarity=-0.092 Sum_probs=49.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.... +..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444445555555555555555555544 344555555555555555555555555555544322 3344444445555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 016681 140 KMRNLESALVVYEEMLKR 157 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~ 157 (384)
..|++++|.+.|+...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=4.9e-08 Score=83.64 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=34.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCC------C--CHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 308 SLISSLCQCGKLEEADKYFKIMKSHSLV------P--GVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
....++...|+.+.|..+++.+...... . ..........++...|++++|.+.+.+.+..
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777776552111 0 1111222233456778888888888776654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=2.8e-09 Score=92.02 Aligned_cols=236 Identities=16% Similarity=0.104 Sum_probs=138.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHc-----CCC-C
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGK-----R-CSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRK-----NMI-H 126 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 126 (384)
+...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++++|..+|+++..- |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666665433 1 022222 2233556666777777777777766541 211 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 016681 127 -DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-----GFS-ANS-FVYTTFIGAYCEYGKIEEANCLMQEMENA---GLK 195 (384)
Q Consensus 127 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 195 (384)
-..+++.|..+|.+.|++++|...++...+. |.. |.. ..++.+...+...+++++|..+++...+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2344556666677777777766666655431 111 111 23445556667777777777777655331 011
Q ss_pred C----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC----C---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh---
Q 016681 196 P----YDETFNLLIEGCAKAKRIEESLSYCEQMMSRK----L---LPSCSAFNEMIRRLCECGNAKQANGMLTLALD--- 261 (384)
Q Consensus 196 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 261 (384)
+ -..+++.+...|.+.|++++|.+++++.+... . .-....++.+...|.+.+.+.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 12567777777777787777777777765431 1 11234566677777777777777777765432
Q ss_pred -cCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 262 -KGF--SPNEITYSHLIGGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 262 -~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (384)
.|+ +-...+|..|...|.+.|+++.|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 1234577788888888888888888777664
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=5.8e-08 Score=83.18 Aligned_cols=305 Identities=10% Similarity=0.017 Sum_probs=188.6
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC-CCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR-YPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
....|..+...+...++.+.+.+.+....+... .++.. ........+...|++++|.+.+++..... |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 345566666777777888887777777665422 22322 22223445567899999999999988775 555555442
Q ss_pred HHHHHh----hcchHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 016681 100 ILRIIQ----EERIEEGMVLLKRMLRKNMIHD-TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC 174 (384)
Q Consensus 100 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (384)
...+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.... +...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 222322 3445555555544 1122233 344455667888999999999999999987433 5677888899999
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CChhhH-H--HHHHHHHhcC
Q 016681 175 EYGKIEEANCLMQEMENAGL-KPYD--ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PSCSAF-N--EMIRRLCECG 247 (384)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~ 247 (384)
..|++++|...+++...... .|+. ..|..+...+...|++++|..++++....... +..... + .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999998876532 1222 23556778889999999999999998654331 111111 1 2233333444
Q ss_pred ChHHHHHH--H-HHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C----hhhHHHHH--HHHHh
Q 016681 248 NAKQANGM--L-TLALDKGF-SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP--T----LPAYTSLI--SSLCQ 315 (384)
Q Consensus 248 ~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l~--~~~~~ 315 (384)
....+.+. + ........ ............++...|+.+.|..+++.+......+ . ..+-..++ .++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 43333332 2 22111100 1112222356677788999999999999886643220 1 11122223 34568
Q ss_pred cCChHHHHHHHHHHhh
Q 016681 316 CGKLEEADKYFKIMKS 331 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~ 331 (384)
.|++++|.+.+.....
T Consensus 320 ~g~~~~A~~~L~~al~ 335 (355)
T cd05804 320 EGNYATALELLGPVRD 335 (355)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=2.3e-08 Score=79.77 Aligned_cols=157 Identities=9% Similarity=-0.052 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 215 EESLSYCEQMMSRKLLPSC-SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYE 293 (384)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (384)
.-|.+.|...-+++..-|+ ..-.++...+.-..+++++...++.+...-.. |...--.+.++++..|.+.+|.++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 3444444444333332221 12233444455555666666666666654333 223333466777778888888888877
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhH-HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 294 MEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDI-YESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
+....++.+..-...|.++|.+++.++.|+.++-++... .+..+ ...+..-|.+.+.+=-|.+.|+.+... .|+
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~ 493 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPT 493 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCC
Confidence 765554433333345557888888888887766544321 12222 333445577777777777777777643 455
Q ss_pred ccccc
Q 016681 373 TSYLC 377 (384)
Q Consensus 373 ~~~~~ 377 (384)
+..|.
T Consensus 494 pEnWe 498 (557)
T KOG3785|consen 494 PENWE 498 (557)
T ss_pred ccccC
Confidence 55443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=4.3e-09 Score=78.87 Aligned_cols=193 Identities=12% Similarity=-0.008 Sum_probs=90.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE 107 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (384)
.+.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +.+-.+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3334445555555555555555554221 34445555555555555555555555555443 344445555555555555
Q ss_pred chHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 108 RIEEGMVLLKRMLRKNMI-HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLM 186 (384)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (384)
++++|...|++......- ....+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 555555555554443111 12234444444444555555555555555444222 3334444444455555555555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681 187 QEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
+.....+. ++..+.-..|..-...|+.+.+-+.=.++
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 54444432 44444444444444445444444433333
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=9.1e-09 Score=77.16 Aligned_cols=195 Identities=11% Similarity=-0.018 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
...|.-.|.+.|+...|..-+++..+.+ +.+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3344445555566666666666555554 444555555555555555555565555555554332 44455555555555
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681 141 MRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS 219 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (384)
.|.+++|...|++...... .-...+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555554321 1123355555555555555555555555555543 1222344445555555555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 220 YCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
.++.....+. ++....-..|+.--..|+.+.+-+.=..+
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555555443 45445444555555555554444443333
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=5.8e-09 Score=86.11 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=153.2
Q ss_pred chHHHHHHHHHHHhcC-CCC--chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 3 LFEVAFDVCRYLEQRG-FSL--SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567888888887642 122 245688888889999999999999999998644 368899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
.|++..+.. +.+..+|..+...+...|++++|.+.+++..+.... +. ........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 999999876 556788888999999999999999999999886533 22 22222233445678999999997755432
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-----CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 016681 160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-L-----KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL 229 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 229 (384)
.++...+ . ......|+...+ +.+..+.+.- . +.....|..+...+.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2232222 2 223335555443 3444443211 0 11224677777778888888888888888877654
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.9e-08 Score=79.54 Aligned_cols=291 Identities=13% Similarity=0.038 Sum_probs=207.3
Q ss_pred cCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681 36 SDRNDLVWRIYQHMLEN-IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV 114 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 114 (384)
.++...+..++-.+... -.+.|+.....+...+...|+.++|...|++....+ +-+..........+.+.|+++....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44555555555444433 244577888999999999999999999999988765 3344444444455677889998888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681 115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (384)
+...+....- .....|-.-+..+...++++.|+.+-++..+.... +...+-.-...+...++.++|.-.|+..+...
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 8888776431 13334444445556678899999988888776332 44455444567888899999999999887653
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH-HHH-HhcCChHHHHHHHHHHHhcCCCCC-HHHH
Q 016681 195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI-RRL-CECGNAKQANGMLTLALDKGFSPN-EITY 271 (384)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 271 (384)
+-+...|.-++.+|...|++.+|...-+.....- ..+..+...+. ..+ .....-++|.++++...+. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 3456889999999999999999887776655431 22444444432 222 2223457788888877765 333 4456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681 272 SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV 335 (384)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (384)
+.+...+...|..+.+..++++.... .||....+.|.+.+...+.+++|++.|......+++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77778888899999999999988765 588889999999999999999999999988876554
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=4e-07 Score=88.10 Aligned_cols=336 Identities=10% Similarity=0.020 Sum_probs=203.7
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC------CCc--HHhHHHHHHHHH
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC------SPM--VIVNTSLILRII 104 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 104 (384)
+...|++..+..+++.+.......+..........+...|+++++..+++.....-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666655542211111222233344555677899999888887654210 111 122223334556
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHh
Q 016681 105 QEERIEEGMVLLKRMLRKNMIHDT----IAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCE 175 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 175 (384)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+++.... |.. .....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987763211121 23455556677889999999998887643 111 112344556677888
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCCChhhHHHHHHHHH
Q 016681 176 YGKIEEANCLMQEMENA----GLK--P-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLPSCSAFNEMIRRLC 244 (384)
Q Consensus 176 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 244 (384)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 1223444555667779999999888876543 11112334445666778
Q ss_pred hcCChHHHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHh
Q 016681 245 ECGNAKQANGMLTLALDKGFSP-NEITY-----SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQ 315 (384)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 315 (384)
..|+++.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999888775421110 11111 11223445578899998888775542211111 113456677888
Q ss_pred cCChHHHHHHHHHHhhC----CCCCC-HhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 316 CGKLEEADKYFKIMKSH----SLVPG-VDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887652 32221 2456667778889999999999999987643
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=1.4e-06 Score=75.34 Aligned_cols=339 Identities=12% Similarity=0.146 Sum_probs=218.4
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLEN-IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+..|-..+..+.++++.......|+..+.. -+......|...+......+-++.+..++++..+.. +..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 455666677778888888888888888765 222345578888888888888999999999988653 444677788
Q ss_pred HHHhhcchHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKN------MIHDTIAYSLIVYAKVKMRNLE---SALVVYEEMLKRGFSANSFVYTTFIGA 172 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (384)
.++..+++++|-+.+...+... .+.+-..|..+-+..++..+.- ....+++.+...-..--...|.+|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999999888876532 2335556666666655544332 233444444433121224578999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------------chHHHHHHHHHHHhCCCC
Q 016681 173 YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK----------------------RIEESLSYCEQMMSRKLL 230 (384)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~~ 230 (384)
|.+.|.+++|..+|++....- .+..-|+.+..+|+.-. +++-.+..|+.+....+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999998877643 22333444444444321 122233344444333211
Q ss_pred -----------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 231 -----------PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP------NEITYSHLIGGYAKEGEIQEVLKLYYE 293 (384)
Q Consensus 231 -----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (384)
-+...|..-+. ...|+..+-...+.++.+. +.| -...|..+...|-..|+.+.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12222322222 2346677777777777653 222 235688889999999999999999998
Q ss_pred HHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHhhC----------CCCC-------CHhHHHHHHHHHhccCC
Q 016681 294 MEYKSISPT---LPAYTSLISSLCQCGKLEEADKYFKIMKSH----------SLVP-------GVDIYESLVGIHLEKGN 353 (384)
Q Consensus 294 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~~~g~ 353 (384)
..+-..+-- ..+|..-...-.+..+++.|.++.++.... |..| +...|..++...-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 876543211 234444445555677888898888876532 1111 34457777777777888
Q ss_pred HHHHHHHHHHHHhCCCC
Q 016681 354 KAKALHLCEEMVSEGLK 370 (384)
Q Consensus 354 ~~~a~~~~~~~~~~~~~ 370 (384)
++....+++++.+..+-
T Consensus 493 festk~vYdriidLria 509 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999887653
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.9e-06 Score=73.74 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=115.2
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
+++++|++....+...+ +-+..++..=+-++.+.+.+++|+.+.+.-... ..+..-+..-.-+.-+.++.++|+..+
T Consensus 26 ~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 67899999999999876 557778888888899999999998665443211 111111111122234567888888877
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC---------------------------CCHHHHHHH
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI---------------------------HDTIAYSLI 134 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~~l 134 (384)
+... +.+..+...-...+-+.+++++|+++|..+.+++.. ....+|..+
T Consensus 103 ~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 103 KGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred hccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 7222 223445555666777888888888888888554221 011133332
Q ss_pred H---HHHHhcCChHHHHHHHHHHHHc-------CCCCC------h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 135 V---YAKVKMRNLESALVVYEEMLKR-------GFSAN------S-FVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 135 l---~~~~~~~~~~~a~~~~~~~~~~-------~~~~~------~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
. ..++..|++..|+++++..... +-.-+ . ..-..+.-++...|+.++|.+++....+..
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 2 3455678899999888887321 11100 0 112334556777888889988888887765
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.17 E-value=1.8e-06 Score=73.13 Aligned_cols=151 Identities=9% Similarity=0.110 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQEVLKLYY 292 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (384)
.+.....++++......--+-+|...++...+...++.|..+|.++.+.+..+ ++...++++..++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 33444455554443222234467777888888888999999999999877766 7778888888776 478889999998
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 293 EMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
--.+.- ..++.--...+.-+.+.++-..+..+|++....++.|+ ..+|..++.--..-|+...+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 765541 22333445677778888999999999999988755544 47899999988899999999888887754
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=2.5e-09 Score=86.93 Aligned_cols=250 Identities=17% Similarity=0.091 Sum_probs=128.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLES 146 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 146 (384)
-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777765555 222221223444555667777777665433 3333322 4555555444433333233344
Q ss_pred HHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 147 ALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 147 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+..-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 443333322222221 2222222334455567777777666532 234555666677777777777777777776
Q ss_pred hCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016681 226 SRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301 (384)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (384)
+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-
T Consensus 159 ~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 543 22333334443332 23567777777776554 44566667777777777777777777777766543 33
Q ss_pred ChhhHHHHHHHHHhcCCh-HHHHHHHHHHhhC
Q 016681 302 TLPAYTSLISSLCQCGKL-EEADKYFKIMKSH 332 (384)
Q Consensus 302 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 332 (384)
++.+...++.+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 445555566666666665 5566666666653
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=9e-08 Score=74.72 Aligned_cols=92 Identities=9% Similarity=0.062 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH-HHHHHH
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTS-LILRII 104 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 104 (384)
+.+.+..+.+..+++.|++++....++..+ +....+.+...|-...++..|-+.++++-.. .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 344444444555555555555554444221 4444455555555555555555555555443 222222211 123333
Q ss_pred hhcchHHHHHHHHHHH
Q 016681 105 QEERIEEGMVLLKRML 120 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~ 120 (384)
+.+.+..|+.+...|.
T Consensus 90 ~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 90 KACIYADALRVAFLLL 105 (459)
T ss_pred HhcccHHHHHHHHHhc
Confidence 4445555555554443
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=9.4e-07 Score=74.68 Aligned_cols=98 Identities=10% Similarity=-0.022 Sum_probs=82.3
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
|+++.|+..|....... ++|-..|..-..++.+.|++++|++=-.+..+ ..|+ ...|+....++.-.|++++|+.-
T Consensus 16 ~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 78999999999998876 44888899999999999999999876666655 4455 66899999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHH
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
|.+-.+.. +.|...++.+..++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhh
Confidence 99988876 66777777777766
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=8.6e-07 Score=71.12 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHH-HHHHHHHhccCCH
Q 016681 276 GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIY-ESLVGIHLEKGNK 354 (384)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 354 (384)
.++.-..++++.+..++.+...-...|...+| +.++.+..|++.+|.++|-++....++ |..+| ..|.++|.+.+++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCc
Confidence 33333445556666665555543333334444 778888899999999999888776666 44455 5567888999999
Q ss_pred HHHHHHHHHH
Q 016681 355 AKALHLCEEM 364 (384)
Q Consensus 355 ~~a~~~~~~~ 364 (384)
+-|..++-++
T Consensus 445 ~lAW~~~lk~ 454 (557)
T KOG3785|consen 445 QLAWDMMLKT 454 (557)
T ss_pred hHHHHHHHhc
Confidence 9888776544
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.9e-06 Score=73.79 Aligned_cols=343 Identities=14% Similarity=0.108 Sum_probs=202.5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
.-+=++.+...+++++|.+...++...+ +-+...+..-+-++.+.+++++|+.+.+.-.... .-+... -.-..+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~-fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF-FEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh-HHHHHHHHH
Confidence 3344677788999999999999998875 3356667777778899999999996665432211 111111 122334557
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------------------
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA------------------------ 161 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------ 161 (384)
.+..++|+..++-+.+. +..+...-...+.+.+++++|.++|+.+.+++.+-
T Consensus 92 lnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred cccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 89999999988833221 33355666677889999999999999986543210
Q ss_pred ---ChHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------CCCCh-------hhHHHHHHHHHhcCchHHHHHHH
Q 016681 162 ---NSFVYTTFI---GAYCEYGKIEEANCLMQEMENAG-------LKPYD-------ETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 162 ---~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
...+|..+. -.+...|++.+|+++++...+.+ -.-+. ..-..+.-.+-..|+..+|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 122344333 34567899999999998883211 00101 11223444566789999999999
Q ss_pred HHHHhCCCCCChhh----HHH-----------------------------------------------HHHHHHhc----
Q 016681 222 EQMMSRKLLPSCSA----FNE-----------------------------------------------MIRRLCEC---- 246 (384)
Q Consensus 222 ~~~~~~~~~~~~~~----~~~-----------------------------------------------l~~~~~~~---- 246 (384)
...++.+.. |... -|. ++..+...
T Consensus 248 ~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 988876543 2111 000 11111000
Q ss_pred ----------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------
Q 016681 247 ----------------------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYY------ 292 (384)
Q Consensus 247 ----------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------ 292 (384)
.....+..++...-+....-...+.-..+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 0112222222222222222123344555666677899999999888
Q ss_pred --HHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC----HhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 293 --EMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH--SLVPG----VDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 293 --~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
.+.+.+..| .+...+...+.+.++.+.|..++...... .-.+. ..++..++..-.+.|+-++|..+++++
T Consensus 407 ~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 407 KSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 444444333 45566667777777777777777666541 11111 123333444445679999999999998
Q ss_pred HhCCCCCCccccccc
Q 016681 365 VSEGLKPSTSYLCSA 379 (384)
Q Consensus 365 ~~~~~~p~~~~~~~l 379 (384)
.+.. ++|..+++.+
T Consensus 485 ~k~n-~~d~~~l~~l 498 (652)
T KOG2376|consen 485 VKFN-PNDTDLLVQL 498 (652)
T ss_pred HHhC-CchHHHHHHH
Confidence 8743 3454444433
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=1.6e-06 Score=69.29 Aligned_cols=300 Identities=10% Similarity=0.059 Sum_probs=151.0
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHH---HHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT---LISALCKGGQLQTYVDMLDRIHGKRCSPMVI-VNT 97 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 97 (384)
++.-..-+-..+...|++..|+.-|...++- |+..|.+ -...|...|+...|+.=+++..+. +||-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444445566666777777777777666553 3333333 334566667777777777776654 45432 222
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYS------------LIVYAKVKMRNLESALVVYEEMLKRGFSANS 163 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 163 (384)
.-...+.+.|.+++|..=|+..++...... ...+. ..+..+...|+...|......+.+. .+.+.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccchh
Confidence 233456677777777777777776543211 11111 1222334456666666666666554 23355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh----HHH-
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA----FNE- 238 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~- 238 (384)
..+..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++..+.+ ||... |-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 556666666666666666665555544433 2333444445555556666666666666665543 22111 111
Q ss_pred --H------HHHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 016681 239 --M------IRRLCECGNAKQANGMLTLALDKGFSPNEI---TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT 307 (384)
Q Consensus 239 --l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 307 (384)
+ +......+++.++....+...+..+..... .+..+-.++...+++.+|++...+..+.. +.|..++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 1 111223344444444444444433221111 22233334444555555555555555432 22244554
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 308 SLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 308 ~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4555555555555555555555553
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=4.4e-08 Score=83.16 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=41.6
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM 113 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 113 (384)
.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+.+ +.|......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3444555555555554444322 34455555555555555555555555555444 444445555555555555555555
Q ss_pred HHHHHHH
Q 016681 114 VLLKRML 120 (384)
Q Consensus 114 ~~~~~~~ 120 (384)
+.++..+
T Consensus 374 ~~L~~Wi 380 (579)
T KOG1125|consen 374 KMLDKWI 380 (579)
T ss_pred HHHHHHH
Confidence 5554443
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=9.8e-09 Score=83.55 Aligned_cols=252 Identities=13% Similarity=0.075 Sum_probs=156.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
++.+.-.|++..++.-.+ ........+......+.+++...|+.+.+ +.++.... +|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 355667788888886665 22222212344455667778888876643 34444444 66666665555555443445
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 110 EEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (384)
+.++.-+++.......+ +..........+...|++++|+++++.. .+.......+.+|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554444333222 2222233334556678888888877542 2566777778888889999999999988
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681 189 MENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF 264 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (384)
|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+....+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87643 33 444445554443 23688899999987665 456778888888888889999999998888877654
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 016681 265 SPNEITYSHLIGGYAKEGEI-QEVLKLYYEMEYK 297 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 297 (384)
. ++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 667777777777777777 6677788877765
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=3.8e-06 Score=74.15 Aligned_cols=354 Identities=15% Similarity=0.095 Sum_probs=230.8
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 016681 11 CRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCS 90 (384)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 90 (384)
+.++....+..++..|..+--++...|+++.+.+.|++....-+ -....|..+...+...|.-..|..+++.-......
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 34444445667899999999999999999999999999876533 35678888888899999999999999886654322
Q ss_pred Cc-HHhHHHHHHHHH-hhcchHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHHHH
Q 016681 91 PM-VIVNTSLILRII-QEERIEEGMVLLKRMLRK--NM--IHDTIAYSLIVYAKVK-----------MRNLESALVVYEE 153 (384)
Q Consensus 91 ~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~-----------~~~~~~a~~~~~~ 153 (384)
|+ ...+-..-..|. +.+..++++.+-.+.+.. +. ......|..+.-+|.. .....++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 33 333333333333 456677777777666652 11 1123344444444432 1234567788888
Q ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC---
Q 016681 154 MLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL--- 230 (384)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 230 (384)
..+.+.. |+...-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-..
T Consensus 470 av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 8776433 333333344456778899999999999988755677788988888888899999999998876543111
Q ss_pred ----------------CChhhHHHHHHHHHhc-----------------------CChHHHHHHHHHHH--------hcC
Q 016681 231 ----------------PSCSAFNEMIRRLCEC-----------------------GNAKQANGMLTLAL--------DKG 263 (384)
Q Consensus 231 ----------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~--------~~~ 263 (384)
-...|...++..+-.. ++..++......+. ..+
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 0011222222221100 11111111111110 001
Q ss_pred ---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 264 ---------F--SPN------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 264 ---------~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
. .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 111 1235556677778888888988888877653 445666776777788899999999999
Q ss_pred HHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHH--HHHHHHhCC
Q 016681 327 KIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH--LCEEMVSEG 368 (384)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~ 368 (384)
......++. ++.+..++...+.+.|+..-|.. ++.++.+.+
T Consensus 708 ~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 708 LVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 998886554 56778899999999998888877 888888754
No 95
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=5.7e-07 Score=74.33 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=135.2
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG-QLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
+..+-..+...++.++|+.+++.+++.... +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 444445555667888888888888875332 3445665555566666 5788888888888776 566667776655555
Q ss_pred hhcch--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCH
Q 016681 105 QEERI--EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY---GKI 179 (384)
Q Consensus 105 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 179 (384)
+.|+. ++++.+++++.+.+.. +..+|+....++.+.|+++++++.++++.+.++. |...|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55553 5677788788776654 7777887777777888888888888888877554 566666665555443 222
Q ss_pred ----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 180 ----EEANCLMQEMENAGLKPYDETFNLLIEGCAKA----KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 180 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
++.++...++.... +-|...|+-+...+... +...+|...+.+....++. +......++..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555555543 34455666666555552 2334566666665554333 45555666666654
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=4e-07 Score=85.05 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCC-C---CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKR-C---SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL 133 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (384)
...|...+....+.++.+.|.++.++....- + .--..+|.++++.-...|.-+...++|+++.+..- .-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHH
Confidence 4456666777777777777777777765431 1 11245666666666666766777777777776531 2345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY---DETFNLLIEGCAK 210 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 210 (384)
|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.- |. .......+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHHHhh
Confidence 777777777777788887777665 22356677777777777777777777777766542 32 2334444555567
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE--ITYSHLIGGYAKEGEIQEVL 288 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 288 (384)
.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|+++...++.|-. ..|...+..=-+.|+-..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77888888888777776544 5567888888878888888888888888777665532 35556666555556655444
Q ss_pred HHHHH
Q 016681 289 KLYYE 293 (384)
Q Consensus 289 ~~~~~ 293 (384)
.+=.+
T Consensus 1692 ~VKar 1696 (1710)
T KOG1070|consen 1692 YVKAR 1696 (1710)
T ss_pred HHHHH
Confidence 44333
No 97
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=1e-06 Score=72.85 Aligned_cols=212 Identities=9% Similarity=0.021 Sum_probs=135.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE-RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
..+-..+...++.++|+.+.+++.+.+ +-+..+|+....++...| ++++++..++++.+...+ +..+|+.....+.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 334444555678888888888888776 566677777766777766 578888888888877655 55567655555555
Q ss_pred cCCh--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---Cc--
Q 016681 141 MRNL--ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA---KR-- 213 (384)
Q Consensus 141 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-- 213 (384)
.++. +++..+++++.+...+ |..+|+....++...|+++++++.++++.+.+ +-|...|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 6653 5677778777776444 77788888888888888888888888888776 34445565554444433 22
Q ss_pred --hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681 214 --IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYA 279 (384)
Q Consensus 214 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (384)
.++.+....+.+...+. +...|+.+...+... +...+|...+....+.++. +......|+..|+
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 23455555566655443 566666666665552 2234455555555443322 4455555555554
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=1.4e-07 Score=73.75 Aligned_cols=194 Identities=10% Similarity=0.021 Sum_probs=107.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL-IVYAK 138 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~ 138 (384)
-+++.+..+.+..++..|++++..-.+.. +.+....+.+..+|-...++..|-..++++-..- |...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 34566666778889999999999887775 5578888999999999999999999999997753 33333332 23455
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681 139 VKMRNLESALVVYEEMLKRGFSANSFVYTTF--IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE 216 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (384)
.+.+.+..|+++...|... ++...-..- .......+++..+..+.++....+ +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6677777888777666542 111111101 111223344444444444433211 11222222223344555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 016681 217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG 263 (384)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 263 (384)
|.+-|....+-+.-.....|+..+ +..+.+++..|.+...++.++|
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 555555544432222333444332 2334455555555555555443
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.7e-07 Score=79.64 Aligned_cols=252 Identities=12% Similarity=0.062 Sum_probs=185.0
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (384)
-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 456788899999999998888655 7888998988888889989999999998887443 67778888888999999999
Q ss_pred HHHHHHHHHHcCCC-----C---ChhhHHHHHHHHHhcCchHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCChHHH
Q 016681 182 ANCLMQEMENAGLK-----P---YDETFNLLIEGCAKAKRIEESLSYCEQMMS-RKLLPSCSAFNEMIRRLCECGNAKQA 252 (384)
Q Consensus 182 a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 252 (384)
|...++.......+ + +...-.. ..+..........++|-++.. .+..+|+.+...|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999888654310 0 0000000 111122233444555555443 44457888899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 253 NGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL-PAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.+.|+.++...+. |..+||.|...++...+.++|+.-|++.++. .|+. .+.-.|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999987544 7889999999999999999999999999876 4553 3444477789999999999998866543
Q ss_pred ---C------CCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 016681 332 ---H------SLVPGVDIYESLVGIHLEKGNKAKALHL 360 (384)
Q Consensus 332 ---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 360 (384)
. +..++..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1222456788887777777877755443
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=2.3e-06 Score=82.96 Aligned_cols=307 Identities=9% Similarity=0.039 Sum_probs=197.0
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCC------CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc----H
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIR------YPN--EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM----V 93 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 93 (384)
.......+...|+++++..++....+.-. .+. ......+...+...|++++|...+++........+ .
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 34445556778999999999987754311 111 11222233455678999999999998765321222 1
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRK----NM-IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS--A- 161 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~- 161 (384)
...+.+...+...|++++|...+.+.... |. .+...++..+...+...|+++.|...+++.... +.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 34455666777899999999999887653 11 111234455667788899999999998887553 221 1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKP--YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAF 236 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 236 (384)
....+..+...+...|++++|...+++..... ..+ ....+..+...+...|+++.|...+.......... ....+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 22334455667788899999999998875431 112 12344445667778899999999988875421110 11111
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-h
Q 016681 237 -----NEMIRRLCECGNAKQANGMLTLALDKGFSPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SISPT-L 303 (384)
Q Consensus 237 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~ 303 (384)
...+..+...|+.+.|...+........... ...+..+..++...|+.++|...+++.... |..++ .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1122445567899999988877554221111 112345667788899999999999987653 22221 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 304 PAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
.+...+..++.+.|+.++|...+.+..+.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566677888999999999999998774
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=4.8e-06 Score=66.66 Aligned_cols=286 Identities=12% Similarity=0.037 Sum_probs=174.8
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHH---HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNT---LIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTY 77 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 77 (384)
|++..|+.-|....+- |+..|.+ -...|...|+...|+.=+...++. +||... -..-...+.+.|.+++|
T Consensus 52 ~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred hhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHH
Confidence 4455566556555543 3333333 334567777777777777777663 555432 22334556777888888
Q ss_pred HHHHHHHHhCCCCCc--HHhH------------HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 016681 78 VDMLDRIHGKRCSPM--VIVN------------TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN 143 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 143 (384)
..=|+.+.+.....+ ...+ ...+..+...|+...|++....+++-. +.|...+..-..+|...|+
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc
Confidence 888888777652111 1111 122344556677777777777777653 3367777777778888888
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh----HHHH---------HHHHHh
Q 016681 144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET----FNLL---------IEGCAK 210 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~ 210 (384)
+..|..=+....+.... +..++--+-..+...|+.+.++..+++..+.+ ||... |..+ +.....
T Consensus 205 ~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777666665554332 45555556677777888888887777777643 54322 2211 112234
Q ss_pred cCchHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSC---SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV 287 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (384)
.++|.++++..+...+..+.... ..+..+-.++...+++.+|++.-.++++... .|+.++.--..+|.-..+++.|
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhhHHHHHH
Confidence 45666666666666665544222 2344555666677778888877777776422 1467777777777777778888
Q ss_pred HHHHHHHHhcC
Q 016681 288 LKLYYEMEYKS 298 (384)
Q Consensus 288 ~~~~~~~~~~~ 298 (384)
+.-|+...+.+
T Consensus 361 I~dye~A~e~n 371 (504)
T KOG0624|consen 361 IHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcC
Confidence 88887777664
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.01 E-value=9.6e-07 Score=82.68 Aligned_cols=227 Identities=13% Similarity=0.075 Sum_probs=146.2
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH-----DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF 164 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 164 (384)
|.+...|-..|......++.+.|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+..- ...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 445667777777777778888888887777653 111 223566666666666777777777777766521 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CChhhHHHHHHHH
Q 016681 165 VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PSCSAFNEMIRRL 243 (384)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 243 (384)
.|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.-++ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 66777777777778888888887776642 133466777777777777777777777776654222 1234445555666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChHH
Q 016681 244 CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL--PAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 321 (384)
.+.|+.+++..+|+......++ ....|+.+++.-.++|+.+.+..+|+++...++.|-. ..|...+..--..|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6777777777777777765333 5667777777777777777777777777777665532 234444444334444333
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-06 Score=71.86 Aligned_cols=330 Identities=12% Similarity=0.012 Sum_probs=208.1
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
.+.+..|+++.|+..|...+.... +|...|..-..+|++.|++++|++=-.+-.+.. |.-...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 466789999999999999988755 488899999999999999999988877777664 444678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC--------------------------------------------
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM---RN-------------------------------------------- 143 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~-------------------------------------------- 143 (384)
+|+..|.+-++.... +...++-+..++... ++
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999988776433 455555555444111 00
Q ss_pred -hHHHHHHHHHHHH--------c-------CCCC---------C-------------hHHHHHHHHHHHhcCCHHHHHHH
Q 016681 144 -LESALVVYEEMLK--------R-------GFSA---------N-------------SFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 144 -~~~a~~~~~~~~~--------~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
........-.+.. . +..| . ..-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0000000000000 0 0001 0 01123445555555666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHHhcCChHHHHHHHHH
Q 016681 186 MQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNE-------MIRRLCECGNAKQANGMLTL 258 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~ 258 (384)
+....+.. -+..-++....+|...|.+..+........+.|.. ...-|+. +..++.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 66665543 33334455556667777776666666655554432 2222222 23355556777777777777
Q ss_pred HHhcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 016681 259 ALDKGFSPNEITY-------------------------SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL 313 (384)
Q Consensus 259 ~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (384)
.......|+...- ..-...+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6654444332211 111334556788888888888888776 56777888888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.+.|.+..|..-.+..++.++. ....|..=..++....+++.|.+.|++.++..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888887777775332 33445444555666677888888888777644
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=7e-07 Score=78.19 Aligned_cols=219 Identities=15% Similarity=0.113 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681 128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG 207 (384)
Q Consensus 128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (384)
...-..+...+...|-..+|..+|+++. .|...+.+|...|+..+|..+..+-.+ -+|+...|..+...
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3334455667778888888888887654 456678888999999999888887776 36888888888887
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEV 287 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (384)
.....-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.++ .-..+|-.+.-+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHH
Confidence 77666778888887765332 222222333447888888888887776533 3567777777777888899999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+.. +...|...+.....-|.+++|.+.+.++.+.
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99888887653 345668899999999999999999999988887743 6777888888888899999999998887754
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=2.7e-06 Score=78.59 Aligned_cols=237 Identities=14% Similarity=0.079 Sum_probs=132.1
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE-ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI 100 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (384)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++..++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4556666777776777777777777655553 2332 2222222344444544333332 222
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (384)
.......++..+..++..+...+ -+..++..+..+|-+.|+.+++..+++++.+.. +-|+.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33333333433333444444332 134466667777777778888888887777775 33677777777777777 777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
+|.+++.+.... +...+++.++..++.++....+. +...+..+. +.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHH
Confidence 777777766543 44455666777777776665433 222222222 2222
Q ss_pred hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 261 DK-GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 261 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
.. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 21 112233445555566667777777777777777664 334555555666554
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=4.8e-06 Score=74.23 Aligned_cols=312 Identities=13% Similarity=0.098 Sum_probs=145.5
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-C-------C-CCCHHHHHHHHHHHHccC
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-I-------R-YPNEATIRTLISALCKGG 72 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~ 72 (384)
|+.|.|.+-.+.+. +...|..+.+.|.+.++++-|.-.+..|... | . .|+ .+-..........|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 55566655554443 4456666777777777666666555555321 1 1 111 12222222334556
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 016681 73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYE 152 (384)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 152 (384)
.+++|..+|++..+.+ .|=..|-..|.+++|.++-+.=-+-.. ..||......+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 6677777766665432 233344456666666665543222111 2244444444455566666666655
Q ss_pred HHHHcC-------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681 153 EMLKRG-------------------FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR 213 (384)
Q Consensus 153 ~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (384)
+...+. -..|...|.-.....-..|+.+.|+.+|....+ |-.+++..+-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 421110 001222222233333334444444444443322 2222233333444
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE------------ 281 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 281 (384)
.++|-++-++- -|......+.+.|-..|++.+|...|.++.. +...|+.|-.+
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALM 1018 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhh
Confidence 44444443322 1344555566667777777777766655432 11222221111
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH-H-------HHhh--CCCCCCHhHHHHHHHHH
Q 016681 282 ---GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF-K-------IMKS--HSLVPGVDIYESLVGIH 348 (384)
Q Consensus 282 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~-------~~~~--~~~~~~~~~~~~l~~~~ 348 (384)
.+.-.|-+.|++. |. -+...+..|-++|.+.+|+++- + +++. .+...|+...+.-..-+
T Consensus 1019 s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF 1090 (1416)
T ss_pred cCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 1222222333221 11 1222344566777777776542 1 1122 23344666667667777
Q ss_pred hccCCHHHHHHHHHHH
Q 016681 349 LEKGNKAKALHLCEEM 364 (384)
Q Consensus 349 ~~~g~~~~a~~~~~~~ 364 (384)
+...++++|..++-..
T Consensus 1091 ~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 7777777777665444
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.88 E-value=1.6e-06 Score=66.76 Aligned_cols=154 Identities=9% Similarity=0.016 Sum_probs=113.8
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
-.|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...+...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 457788888876555433221 11 01123566777888888877776 778889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAK-VKMRN--LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
+|...|++..+.... +...+..+..++ ...|+ .++|.+++++..+.... +...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998887644 677777777754 56676 48999999998887544 77788888888899999999999999
Q ss_pred HHHHcCCCCChhh
Q 016681 188 EMENAGLKPYDET 200 (384)
Q Consensus 188 ~~~~~~~~~~~~~ 200 (384)
++.+.. +|+..-
T Consensus 169 ~aL~l~-~~~~~r 180 (198)
T PRK10370 169 KVLDLN-SPRVNR 180 (198)
T ss_pred HHHhhC-CCCccH
Confidence 988765 455433
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.2e-06 Score=70.24 Aligned_cols=186 Identities=9% Similarity=0.077 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH--HHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT--IAY 131 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 131 (384)
....+..+...+...|+++.|...|+++.... +.+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666677777777776665543 2222 34555666666677777777777776654332111 123
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 016681 132 SLIVYAKVKM--------RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL 203 (384)
Q Consensus 132 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (384)
..+..++.+. |+.+.|.+.++.+...... +...+..+..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence 3333334333 5566677777666654221 1112211111100 000 000 01113
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMSRKLL--PSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
+...+.+.|++.+|...++...+..+. .....+..+..++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344566677777777777776665321 12456667777777777777777777666554
No 109
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=4.1e-09 Score=54.77 Aligned_cols=29 Identities=31% Similarity=0.712 Sum_probs=11.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 300 SPTLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 300 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
.||..||+.||.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1.8e-06 Score=69.27 Aligned_cols=188 Identities=11% Similarity=0.019 Sum_probs=129.1
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHH---h
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVI---V 95 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 95 (384)
.....+-.+...+.+.|+++.|...|+.+...... |. ...+..+...+...|++++|...++++.+.. +.+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 35667778888899999999999999999875332 11 2467778889999999999999999998765 22222 4
Q ss_pred HHHHHHHHHhh--------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681 96 NTSLILRIIQE--------ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT 167 (384)
Q Consensus 96 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (384)
+..+..++... |++++|.+.++++....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 55555556554 7899999999999876433 2223322211100 000 000 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
.+...+.+.|++++|...++...+.. .+.....+..+..++.+.|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45567888899999999998887653 12234677888888999999999999888876653
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=4.2e-06 Score=73.55 Aligned_cols=214 Identities=14% Similarity=0.080 Sum_probs=146.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
..+...+.+.|-...|..+|+++ ..|...+.+|...|+..+|..+..+..++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 44556667777777777777764 34556777777778777777777776662 45777777776666555
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-..-.+..+.+++..+.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 5566666666554322 11222222334677888888777766543 233466777777777788888888888
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681 222 EQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY 296 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (384)
.......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+....+.|.+++|.+.+.++.+
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 887776544 567788888888888888888888888887763 3566777777777788888888888887654
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=2.2e-06 Score=65.96 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=103.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNA 249 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 249 (384)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567788888776544432211 11 0 122356667777777777776654 777888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 250 KQANGMLTLALDKGFSPNEITYSHLIGGY-AKEGE--IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
+.|...++...+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888876543 677777777753 56666 488888888888775 345667777778888888888888888
Q ss_pred HHHhhCC
Q 016681 327 KIMKSHS 333 (384)
Q Consensus 327 ~~~~~~~ 333 (384)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 8887753
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.81 E-value=2.5e-06 Score=65.76 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=120.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
..+-..+...|+-+....+........ +.+....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666667777777777776655443 5566667778888888888888888888887654 45888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 142 RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
|+.+.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888888776332 66677788888888888888888888877665 335566666777777888888888777
Q ss_pred HHHHhC
Q 016681 222 EQMMSR 227 (384)
Q Consensus 222 ~~~~~~ 227 (384)
..-...
T Consensus 226 ~~e~~~ 231 (257)
T COG5010 226 VQELLS 231 (257)
T ss_pred cccccc
Confidence 655443
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=7.9e-09 Score=53.70 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.1
Q ss_pred CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 332 HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+|+.||..+|+.||.+|++.|+.++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=7e-05 Score=68.65 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681 163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242 (384)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (384)
+..|+.+.++-.+.|...+|++-|-+. .|+..|..++....+.|.+++..+++....+....|. .=+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 445666666666666666665544321 2234466666666666666666665555444433333 22345555
Q ss_pred HHhcCChHHHHHH
Q 016681 243 LCECGNAKQANGM 255 (384)
Q Consensus 243 ~~~~~~~~~a~~~ 255 (384)
|++.++..+.+++
T Consensus 1176 yAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEF 1188 (1666)
T ss_pred HHHhchHHHHHHH
Confidence 6666555544443
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.80 E-value=2.9e-06 Score=74.73 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=19.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 173 YCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
......|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHH
Confidence 3334444444444444443321 1123344444444444444444444
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=3.5e-06 Score=76.96 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016681 55 YPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLI 134 (384)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (384)
..+...+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+..+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3457788888888888899999999999888875 666778888888888999999999999988887654 66677777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016681 135 VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLL 204 (384)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (384)
..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .|....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 8888888999999999999887432 357788888888888999999999998887653 3444444443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=4.9e-06 Score=64.16 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016681 132 SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA 211 (384)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (384)
..+-..+...|+-+....+....... .+.+.......++...+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444455555555555555443322 12244445556666666666666666666665544 55566666666666666
Q ss_pred CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 212 KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY 291 (384)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (384)
|+.+.|..-|.+..+..+. ++...+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666666655433 4445555655666666666666666665554322 4455555555555666666666554
Q ss_pred HH
Q 016681 292 YE 293 (384)
Q Consensus 292 ~~ 293 (384)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=1.6e-05 Score=73.70 Aligned_cols=206 Identities=10% Similarity=0.043 Sum_probs=116.1
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.+++++|.++.+...+.. +-....|-.+...+.+.++.+.+..+ .+ +.......++.....+
T Consensus 44 ~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 44 ENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSFSQNLKWAIVEHI 105 (906)
T ss_pred cCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhcccccchhHHHHH
Confidence 378899999999777763 22334444444466777776665544 22 2333333334333333
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
...+... .-+...+..+..+|-+.|+.++|.++++++++.... |+.+.|.+...|... ++++|.+++.+....
T Consensus 106 ~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 106 CDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 3333332 334446667777777777777777777777776633 677777777777777 777777777666554
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-------------------LKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
+...+++.++.+++.++.... ..--..++-.+-..|...++++++..++
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 333344444444444444332 1111233344445555566666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHH
Q 016681 222 EQMMSRKLLPSCSAFNEMIRRLC 244 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~ 244 (384)
+.+.+.... |..+..-++.+|.
T Consensus 247 K~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCc-chhhHHHHHHHHH
Confidence 666665444 4444444444443
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2e-05 Score=60.98 Aligned_cols=249 Identities=14% Similarity=0.067 Sum_probs=119.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
++-+.-.|++..++..-....... -+...-..+.++|...|..... ..++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchh
Confidence 345555666666655544433321 2333333344555555544332 22222222 23333333333333323333
Q ss_pred HHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 110 EEG-MVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 110 ~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (384)
+.- -++.+.+.......+......-...|++.+++++|++..+... +......=+..+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2333334333333233333333445666777777776665421 222333333445556666677777766
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 016681 189 MENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF 264 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 264 (384)
|.+- .+..|.+.|.+++.+ .+....|.-+|++|-++ ..|++.+.+-...++...+++++|..+++....+..
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 6652 233455555555443 23466666666666553 345666666666666666666666666666666543
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 016681 265 SPNEITYSHLIGGYAKEGEI-QEVLKLYYEME 295 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 295 (384)
. ++.+...++.+-...|.. +...+.+.++.
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3 444444444443334433 22333444443
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=3.8e-05 Score=59.05 Aligned_cols=190 Identities=13% Similarity=0.074 Sum_probs=130.7
Q ss_pred cCChhHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 36 SDRNDLVWRIYQHMLEN---I-RYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
.++.++..+++..+... | ..|+.. .|..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677788887777643 3 445544 35556666677888888998888877653 333333322233355678889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
+|.++++.+.+.++. |..++-.=+...-..|+.-+|.+-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999887633 6667766666666677777888888887776 55688899999999999999999999998887
Q ss_pred HcCCCCChhhHHHHHHHHHhcC---chHHHHHHHHHHHhCCC
Q 016681 191 NAGLKPYDETFNLLIEGCAKAK---RIEESLSYCEQMMSRKL 229 (384)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 229 (384)
-.. +.+...+..+...+.-.| +.+.+.++|.+..+...
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 653 333444555555444333 56677788887777654
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=3.1e-06 Score=61.62 Aligned_cols=93 Identities=9% Similarity=-0.093 Sum_probs=48.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
.+...+...|++++|...|+...... +.+...|..+...+.+.|++++|...|++....+.. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34444455555555555555555444 444555555555555555555555555555544322 4444555555555555
Q ss_pred ChHHHHHHHHHHHHc
Q 016681 143 NLESALVVYEEMLKR 157 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~ 157 (384)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555443
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.7e-05 Score=61.31 Aligned_cols=249 Identities=14% Similarity=0.061 Sum_probs=127.5
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
+-+.-.|.+..++..-....... .++..-..+-++|...|.+..... +..... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444566666666555443321 333444445566666665543322 222211 233333333333333233322
Q ss_pred H-HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681 146 S-ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 146 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
+ ..++.+.+.......+......-...|...|++++|++...... +......=...+.+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23334444444333333334444456677777777777665521 1122222234455666677777777777
Q ss_pred HhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681 225 MSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (384)
.+.. +..|.+.+..++.+ .+....|.-+|+++.++ .+|+..+.+....++...|++++|..+++....+. .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 6643 44555555555443 34566677777777654 45666777777777777777777777777766654 2
Q ss_pred CChhhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 016681 301 PTLPAYTSLISSLCQCGKL-EEADKYFKIMKS 331 (384)
Q Consensus 301 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 331 (384)
.++.+...++.+-...|.. +-..+.+..++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3445554455444444443 333444555544
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=2.3e-05 Score=71.77 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=99.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
..+...+-.|..+..+.|.+++|+.+++...+.. +-+......+...+.+.+++++|....++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3356677777777777777777777777777643 233455666677777777777777777777776654 56666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL 309 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (384)
..++.+.|++++|..+|+++...+.. +...+..+...+...|+.++|...|++..+.. .|....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 77777777777777777777764322 46677777777777777777777777776653 3444444443
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=3.4e-05 Score=70.46 Aligned_cols=350 Identities=10% Similarity=-0.030 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 016681 5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIR-YPNEATIRTLISALCKGGQLQTYVDMLDR 83 (384)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 83 (384)
.+|.+.|+...+.. ..+..++..+...|++..+++.|..+.-..-+... ..-...|....-.+.+.++...|+.-|+.
T Consensus 509 ~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs 587 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS 587 (1238)
T ss_pred HHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH
Confidence 44555555555543 23555566666666666666666655222211100 00111222233344555666666666666
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHc----
Q 016681 84 IHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL--IVYAKVKMRNLESALVVYEEMLKR---- 157 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~---- 157 (384)
..+.. |.|...|..+..+|.++|++..|.++|.+..... |+. +|.. ..-..+..|.+.++...+......
T Consensus 588 ALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 588 ALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred HhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 66655 6677778888888888888888888887776543 221 2222 222334567777777776665432
Q ss_pred --CCCCChHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH------HHHHHH-
Q 016681 158 --GFSANSFVYTTFIGAYCEYGKI-------EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE------ESLSYC- 221 (384)
Q Consensus 158 --~~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~- 221 (384)
+..--..++..+...+.-.|-. +++++.|--...+....+...|..+-.+|.-.-..+ ....++
T Consensus 664 ~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~ 743 (1238)
T KOG1127|consen 664 RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILS 743 (1238)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHH
Confidence 1111112222222222222222 223333322222221222222222211111000000 000000
Q ss_pred HHHHhCCC--------------------CCChhhHHHHHHHHHh----cC----ChHHHHHHHHHHHhcCCCCCHHHHHH
Q 016681 222 EQMMSRKL--------------------LPSCSAFNEMIRRLCE----CG----NAKQANGMLTLALDKGFSPNEITYSH 273 (384)
Q Consensus 222 ~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (384)
.+....+. ..+..+|..+...|.+ .+ +...|...+....+..- .+..+|+.
T Consensus 744 ~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~Wna 822 (1238)
T KOG1127|consen 744 KQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNA 822 (1238)
T ss_pred HHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence 00111111 1122333333333322 11 22345555555554322 25556665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681 274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 353 (384)
|... ...|++.-+...|-+-.... +.+..+|..+...+.+..+++-|...|.......+. +...|-.........|+
T Consensus 823 LGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 823 LGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGR 899 (1238)
T ss_pred HHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHH
Confidence 5544 44456666666665544442 334556666666666777777777777776665433 44555544444455666
Q ss_pred HHHHHHHHHH
Q 016681 354 KAKALHLCEE 363 (384)
Q Consensus 354 ~~~a~~~~~~ 363 (384)
.-++..+|..
T Consensus 900 ii~~~~lfaH 909 (1238)
T KOG1127|consen 900 IIERLILFAH 909 (1238)
T ss_pred HHHHHHHHHh
Confidence 6566655554
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=4e-06 Score=61.05 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
.+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 33444445555555555555544433 233444444444555555555555555555444332 4444444444555555
Q ss_pred ChHHHHHHHHHHHhc
Q 016681 248 NAKQANGMLTLALDK 262 (384)
Q Consensus 248 ~~~~a~~~~~~~~~~ 262 (384)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555554443
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00014 Score=62.22 Aligned_cols=349 Identities=11% Similarity=0.076 Sum_probs=203.7
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
+-|..+|+.|++-+... -.+++.+.|+++... .+-....|..-|..-....+++....+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 66999999999988776 999999999999875 3335778999999999999999999999998866 4557778777
Q ss_pred HHHHHhh-cchHH----HHHHHHHH-HHcCCCC-CHHHHHHHHHH---------HHhcCChHHHHHHHHHHHHcCCCC--
Q 016681 100 ILRIIQE-ERIEE----GMVLLKRM-LRKNMIH-DTIAYSLIVYA---------KVKMRNLESALVVYEEMLKRGFSA-- 161 (384)
Q Consensus 100 ~~~~~~~-~~~~~----a~~~~~~~-~~~~~~~-~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~-- 161 (384)
+.--.+. ++... ..+.|+-. .+.|+.+ +...|+..+.. +....+.+...+++.++....+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7544332 22222 22233322 2345433 22234444432 233445666777777776542210
Q ss_pred ----ChHHHHHHHHHH-------HhcCCHHHHHHHHHHHHH--cCCCCChhh---------------HHHHHHHH-----
Q 016681 162 ----NSFVYTTFIGAY-------CEYGKIEEANCLMQEMEN--AGLKPYDET---------------FNLLIEGC----- 208 (384)
Q Consensus 162 ----~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~----- 208 (384)
|-..|..-|+.. -+...+..|.++++++.. .|+.....+ |..+|.-=
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111111111111 122335556666655542 121111111 11111100
Q ss_pred --------------------------------------------HhcCc-------hHHHHHHHHHHHhCCCCCChhhHH
Q 016681 209 --------------------------------------------AKAKR-------IEESLSYCEQMMSRKLLPSCSAFN 237 (384)
Q Consensus 209 --------------------------------------------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 237 (384)
...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 122223333222211111222222
Q ss_pred HHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHH
Q 016681 238 EMIRRLCECG---NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP-TLPAYTSLISSL 313 (384)
Q Consensus 238 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 313 (384)
.+...--..- ..+....+++.+...-..--.-+|..++....+...+..|..+|.+..+.+..+ +..++++++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2221111111 244455555555543222223467888888888889999999999999987766 667788888877
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 016681 314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTS 374 (384)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 374 (384)
| .++.+-|.++|+--.++ ...++..-...+.-+...++-..|..+|++....++.||.+
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 6 47889999999976653 22245555677888888999999999999999887777653
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=6.4e-05 Score=57.82 Aligned_cols=188 Identities=12% Similarity=0.152 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHHhc---C-CCCchhh-HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 016681 2 RLFEVAFDVCRYLEQR---G-FSLSLIS-FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT 76 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 76 (384)
++.++.++++..+... | ..++..+ |..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 5678888888888543 3 4455544 6778888899999999999999998874 2233332222333455799999
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681 77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK 156 (384)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 156 (384)
|.++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999988 778888887777777888888999988888776 455999999999999999999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 016681 157 RGFSANSFVYTTFIGAYCEYG---KIEEANCLMQEMENAG 193 (384)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 193 (384)
..+ .++..+..+...+.-.| +.+.+.++|.+..+..
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 632 25556666666655554 4667888888887754
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=0.00012 Score=61.91 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=56.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCchHH
Q 016681 138 KVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAKRIEE 216 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 216 (384)
+...|++++|+..++.+... .+-|+..+......+.+.++.++|.+.++++.... |+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 33445555555555555444 22244444444555555555555555555555432 33 2334444455555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 016681 217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQAN 253 (384)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 253 (384)
|..+++......+. ++..|..+.++|...|+..++.
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHH
Confidence 55555555544333 5555555555555555544443
No 130
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.00029 Score=64.83 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=58.8
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
..+..++-+++|..+|+..- .+....+.|+.- -+.++.|.+.-++.. .+..|..+..+-.+.|...
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 33444555555555555432 133333433332 234444444443322 1344555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC 184 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 184 (384)
+|.+-|-+. + |+..|..+++...+.|.+++..+++...++..-.|. .=+.++-+|++.++..+.++
T Consensus 1122 dAieSyika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1122 DAIESYIKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred HHHHHHHhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHH
Confidence 554433222 1 344455555555555555555555544444333222 22344455555555444433
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.59 E-value=0.00047 Score=62.62 Aligned_cols=221 Identities=11% Similarity=0.110 Sum_probs=133.3
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHH--HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHV--VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
+++..|+.....+.+.. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 57888999888887652 3332 2233333 56889999999888877665544 78899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-C---------hHHHHH
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR-N---------LESALV 149 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~~a~~ 149 (384)
+|++..... |+......+..+|.+.+++.+-.+.--++-+. ++-+...|-+++....... . ..-|.+
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999998774 55777778888888888776544444444332 2224444444444443321 1 123444
Q ss_pred HHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 150 VYEEMLKRG-FSANSFVYTTFIGAYCEYGKIEEANCLMQE-MENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
.++.+.+.+ ..-+..-...-.......|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++..++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554443 222222233334455567778888777732 222222222233334455555566666666666666555
Q ss_pred CC
Q 016681 228 KL 229 (384)
Q Consensus 228 ~~ 229 (384)
+.
T Consensus 256 ~~ 257 (932)
T KOG2053|consen 256 GN 257 (932)
T ss_pred CC
Confidence 43
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=3.2e-05 Score=69.29 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=156.8
Q ss_pred chhhHHHHHHH--HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---------CC
Q 016681 22 SLISFNTLIHV--VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR---------CS 90 (384)
Q Consensus 22 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 90 (384)
|..|-..+++. |...|+.+.|.+-.+.++ +...|..+.++|.+..+++-|.-.+-.|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 66666666644 777899999888776654 55789999999999988888777666654321 01
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI 170 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 170 (384)
++ ..-....-.....|..++|+.+|++..+.+ .|=..|-..|.+++|.++-+.--... =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 222223334467788999999999887642 23345667899999998765432211 234666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----------C---------CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681 171 GAYCEYGKIEEANCLMQEMENA----------G---------LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP 231 (384)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (384)
.-+-..++.+.|++.|++.... . -..|...|......+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 7777788888888888653211 1 012223344444444455666666666655432
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 232 SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (384)
|.++++..|-.|+.++|-++-++- -|....-.+.+.|...|++.+|..+|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445666667778888877765432 256667778899999999999999998775
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=7.8e-06 Score=59.15 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=38.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
.+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++....+.. +...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33334444444444444444444333 333444444444444444444444444444333211 3333333344444444
Q ss_pred ChHHHHHHHHHHHH
Q 016681 143 NLESALVVYEEMLK 156 (384)
Q Consensus 143 ~~~~a~~~~~~~~~ 156 (384)
+++.|...|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=0.00016 Score=61.04 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 56 PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
|+...+...+.+......-..+..++.+..+ +.-...+-...-.+...|+++.|+..++.++.... -|...+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4445555555544433333333333333222 11223333334456678999999999999988743 3777777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGFSAN-SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRI 214 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (384)
..+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.+|+.+++...... +-|...|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 8999999999999999999987 334 6667778899999999999999999988765 67789999999999999998
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
.++.....+ .+...|+++.|...+....+.
T Consensus 425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 877655444 455678889998888888765
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=9.8e-06 Score=58.61 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY 173 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (384)
.....+...+...|++++|.+.++.+...+.. +...+..+...+.+.|+++.|..+++...+.+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 33344444444455555555555554443321 34444444444445555555555555444432 12334444444445
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 016681 174 CEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~ 191 (384)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555544444
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.56 E-value=0.00029 Score=62.74 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=29.6
Q ss_pred cchHHHHHHHHHHHhcCCCCch-hhHHHHHHHHhhcCChhHHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSL-ISFNTLIHVVTKSDRNDLVWRIYQH 48 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 48 (384)
|++++|..+++.... .|+. ..|-.+.......|++--|.+.|..
T Consensus 458 ~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 458 GDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred CchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 788999988887654 2444 5577777777777766665555543
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.55 E-value=0.00024 Score=65.25 Aligned_cols=353 Identities=12% Similarity=-0.008 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
..|+..|=+..+.. +-=...|..+...|....+...|.+.|+..-+... -+..........|++..+++.|..+.-..
T Consensus 475 ~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 475 ALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444444432 12345677788888877788888888888776533 25667777888888888898888884433
Q ss_pred HhCC-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 016681 85 HGKR-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS 163 (384)
Q Consensus 85 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 163 (384)
.+.. ...-...|..+.-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+.... .|+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~- 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL- 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-
Confidence 3322 0111233444455667788888888888888777654 8888999999999999999999999888765 222
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCch-------HHHHHHHHHHHhCC
Q 016681 164 FVYTTF--IGAYCEYGKIEEANCLMQEMENAG------LKPYDETFNLLIEGCAKAKRI-------EESLSYCEQMMSRK 228 (384)
Q Consensus 164 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~ 228 (384)
.+|... .-..+..|.+.+|...+..+.... ...-..++..+...+.-.|-. +++++.|.-.....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 233322 234456788888888887765421 111122333222222222222 23333332222222
Q ss_pred CCCChhhHHHHHHHHH---hcC-C-h-HHHHHHH-HHHHhcCC--------------------CCCHHHHHHHHHHHHh-
Q 016681 229 LLPSCSAFNEMIRRLC---ECG-N-A-KQANGML-TLALDKGF--------------------SPNEITYSHLIGGYAK- 280 (384)
Q Consensus 229 ~~~~~~~~~~l~~~~~---~~~-~-~-~~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~- 280 (384)
...+...|-.+-++|. ... + + .....++ .+....+. ..+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1112222211111111 000 0 0 0000000 01111111 1123445444444433
Q ss_pred -------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681 281 -------EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 281 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 353 (384)
..+...|...+.+..+.. ..+..+|+.|.-. ...|++.-|.-.|-+-+...+. +..+|..+...+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEeccc
Confidence 123346777777766553 3455566655444 5557777777766655554333 66778888888889999
Q ss_pred HHHHHHHHHHHHh
Q 016681 354 KAKALHLCEEMVS 366 (384)
Q Consensus 354 ~~~a~~~~~~~~~ 366 (384)
++.|...|...+.
T Consensus 866 ~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQS 878 (1238)
T ss_pred HHHhhHHHHhhhh
Confidence 9999999888764
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.3e-05 Score=67.76 Aligned_cols=120 Identities=17% Similarity=0.078 Sum_probs=56.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681 239 MIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK 318 (384)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 318 (384)
++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3334444445555555555555442 22 22234444444445555555555554332 2233333333444555555
Q ss_pred hHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 319 LEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
++.|..+.+++.+..+. +..+|..|..+|...|+++.|+-.++.+
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555553222 3445555555555555555555555544
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=1.6e-05 Score=67.28 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
+......++..+...++++.|+++|+++.+.. |+ ....+++.+...++..+|.+++++....... +......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455566777777788889999998888764 43 3445777777788888888888888865432 6666676777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
.+.+.++++.|.++.+++.+..+ -+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888889999999888887632 255688889999999999999988888765
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=5.5e-07 Score=47.59 Aligned_cols=33 Identities=30% Similarity=0.569 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 340 IYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=4.5e-05 Score=55.77 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChH
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~ 145 (384)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555443 222 12222333455555666666666666555442221 112233445555566666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (384)
+|...++..... ......+.....++.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665443222 12333444455556666666666655544
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0017 Score=59.24 Aligned_cols=226 Identities=13% Similarity=0.103 Sum_probs=140.0
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHH
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTL-ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEE 111 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 111 (384)
....+++.+|......+.+. .|+......+ .-.+.+.|+.++|..+++.....+ ..|..+...+-..|...+..++
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 45677888888888887775 2443322111 123467788888888888776665 4477788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC----------HHH
Q 016681 112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK----------IEE 181 (384)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~ 181 (384)
|..+|++..+.. |+......+..+|++.+++.+-.++--++-+. ++-+...+-++++.+...-. ..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 888888887754 45666666777788877776655544444433 33355566566666554321 123
Q ss_pred HHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 182 ANCLMQEMENAG-LKPYDETFNLLIEGCAKAKRIEESLSYCE-QMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 182 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
|.+.++.+.+.+ ..-+..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444555555443 11122222222333445677888888873 3444333334444556677777888888888888888
Q ss_pred HhcCC
Q 016681 260 LDKGF 264 (384)
Q Consensus 260 ~~~~~ 264 (384)
...|.
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 77754
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.34 E-value=8.7e-07 Score=46.43 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681 339 DIYESLVGIHLEKGNKAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 371 (384)
.+|+.++.+|.+.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.5e-06 Score=45.91 Aligned_cols=33 Identities=42% Similarity=0.750 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT 302 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 302 (384)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.31 E-value=2.8e-05 Score=66.17 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=97.6
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHH
Q 016681 53 IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA 130 (384)
Q Consensus 53 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 130 (384)
+.+.+......++..+....+++.+..++-+..... ...-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344567777778888888888888888888877652 122244556889999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY 176 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (384)
++.++..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988887776666777777777666665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=0.00011 Score=53.71 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=64.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChHH
Q 016681 246 CGNAKQANGMLTLALDKGFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL--PAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 321 (384)
.++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665432210 122223445556667777777777776665422211 133345566666777777
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
|...++...... .....+......+.+.|++++|...|+..
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777775543322 23345556666677777777777776653
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.29 E-value=2.5e-05 Score=66.49 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=98.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681 158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA 235 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (384)
+.+.+......+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+.++.++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 455577788888888888888888998888887652 212235567899999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE 281 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (384)
++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888776666767766666666554
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.6e-06 Score=45.43 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP 56 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 56 (384)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.18 E-value=6.4e-05 Score=50.13 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681 137 AKVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYG--------KIEEANCLMQEMENAGLKPYDETFNLLIEG 207 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (384)
.+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+|++|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334555555555555555554 445555555554444332 223445556666666666666666666655
Q ss_pred HHh
Q 016681 208 CAK 210 (384)
Q Consensus 208 ~~~ 210 (384)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 543
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.14 E-value=9.4e-05 Score=49.43 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=6.3
Q ss_pred HHHhhcchHHHHHHHHH
Q 016681 102 RIIQEERIEEGMVLLKR 118 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~ 118 (384)
.+...+++++|.+.++.
T Consensus 43 ~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 43 AYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=0.00011 Score=49.10 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=42.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGF-SPNEITYSHLIGGYAKEG--------EIQEVLKLYYEMEYKSISPTLPAYTSLI 310 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (384)
|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 555555655555554321 2334556666666666666666666666
Q ss_pred HHHHh
Q 016681 311 SSLCQ 315 (384)
Q Consensus 311 ~~~~~ 315 (384)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 65543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=0.0001 Score=49.29 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+..+...+...|++++|...++...+... .+...+..+...+...+++++|.+.++...... +.+...+..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 355677788889999999999999887633 245677788888889999999999999988765 555678888888899
Q ss_pred hhcchHHHHHHHHHHHHc
Q 016681 105 QEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~ 122 (384)
..|+++.|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999988887654
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=0.00027 Score=49.68 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=4.7
Q ss_pred cCChhHHHHHHHH
Q 016681 36 SDRNDLVWRIYQH 48 (384)
Q Consensus 36 ~~~~~~a~~~~~~ 48 (384)
.|++++|.+.|+.
T Consensus 15 ~~~~~~A~~~~~~ 27 (119)
T TIGR02795 15 AGDYADAIQAFQA 27 (119)
T ss_pred cCCHHHHHHHHHH
Confidence 3333333333333
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00017 Score=59.02 Aligned_cols=143 Identities=12% Similarity=0.106 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG-CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (384)
.+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777778888887776443 2233444443333 22245666677888777765 33366677777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 243 LCECGNAKQANGMLTLALDKGFSPNE---ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 77777777788777777765 22222 36777777777777777777777777765 344334343443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=0.00027 Score=49.65 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHH
Q 016681 59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSL 133 (384)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 133 (384)
.++..+...+.+.|++++|.+.|+.+.... +.+ ...+..+...+.+.|+++.|.+.++.+...... .....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 455667778888999999999999998754 222 456777889999999999999999999875432 12456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8888999999999999999998874
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.05 E-value=0.00075 Score=48.71 Aligned_cols=93 Identities=8% Similarity=-0.089 Sum_probs=61.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 63 TLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 63 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
.+...+...|++++|..+|+.+...+ +.+...|..|..++-..|++++|+..|......++. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444556677777777777766655 555666666666666777777777777776666543 5666666666777777
Q ss_pred ChHHHHHHHHHHHHc
Q 016681 143 NLESALVVYEEMLKR 157 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~ 157 (384)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777777666554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.04 E-value=1.3e-05 Score=52.37 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=8.1
Q ss_pred HHHHHhhcCChhHHHHHHHH
Q 016681 29 LIHVVTKSDRNDLVWRIYQH 48 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~ 48 (384)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=8.1e-06 Score=41.57 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=16.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 340 IYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
+|+.++++|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.03 E-value=0.0002 Score=53.93 Aligned_cols=63 Identities=5% Similarity=-0.049 Sum_probs=27.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP--NEATIRTLISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
..|..+...+...|++++|...|+........| ...++..+...+...|++++|+..+++...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444455555555444444321111 112344444444444444444444444443
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.00026 Score=58.04 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE-CGNAKQANGMLTLALDKGFSPNEITYSHLIGG 277 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (384)
.+|..++....+.+..+.|..+|.+..+.+. .+..+|......-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4678888888888889999999999875432 245555555555333 56677799999988876 45578888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 278 YAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999999988766 33332 47888888888888888888888888874
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.02 E-value=1.9e-05 Score=51.49 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=63.1
Q ss_pred cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681 36 SDRNDLVWRIYQHMLENIRY-PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV 114 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 114 (384)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987542 2455566689999999999999999988 3333 3344555667899999999999999
Q ss_pred HHHH
Q 016681 115 LLKR 118 (384)
Q Consensus 115 ~~~~ 118 (384)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.02 E-value=0.00044 Score=49.85 Aligned_cols=97 Identities=7% Similarity=-0.083 Sum_probs=83.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
...-.+...+...|++++|..+|+.+....+. +..-|..|..++-..|++++|+..|......+ +.++..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445566678899999999999999886543 66778888888999999999999999999887 67888999999999
Q ss_pred HhhcchHHHHHHHHHHHHc
Q 016681 104 IQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 104 ~~~~~~~~a~~~~~~~~~~ 122 (384)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.001 Score=50.27 Aligned_cols=84 Identities=8% Similarity=-0.029 Sum_probs=41.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
.+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+.+..+.... +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 34444455555555555555555554432111 1244555555555566666666666655554322 33444444445
Q ss_pred HHhcCCh
Q 016681 138 KVKMRNL 144 (384)
Q Consensus 138 ~~~~~~~ 144 (384)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5554443
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=1.2e-05 Score=40.88 Aligned_cols=29 Identities=41% Similarity=0.720 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44455555555555555555555554443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00056 Score=58.22 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=68.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
...+...|++++|++.|+++++.... +...|..+..++...|++++|+..++++.... +.+...|..+..++...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 34566777888888888888776432 56677777777778888888888888877765 55667777777778888888
Q ss_pred HHHHHHHHHHHHcC
Q 016681 110 EEGMVLLKRMLRKN 123 (384)
Q Consensus 110 ~~a~~~~~~~~~~~ 123 (384)
++|+..|++.++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877654
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0062 Score=48.71 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhH---HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVN---TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL 133 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (384)
+...+-.....+...|++++|.+.|+.+.... +-+.... -.+..++.+.+++++|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333334455567888999999999888764 2222322 3456778888899999999998887654433334444
Q ss_pred HHHHHHh--c---------------CCh---HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 134 IVYAKVK--M---------------RNL---ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 134 ll~~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
.+.+.+. . .|. ..|...|+.+.+. -|+ +.-..+|...+..+...=
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHHH
Confidence 4444331 1 122 2344555555544 222 222344444333332210
Q ss_pred CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
- ..--.+...|.+.|.+..|..-++.+.+.- .+........++.+|...|..++|......+.
T Consensus 175 ---a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 ---A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 111134555777777777777777777652 22234556667777777787777777665543
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=0.00056 Score=58.20 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=77.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681 65 ISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL 144 (384)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 144 (384)
...+...|+++.|++.|++..+.. +.+...|..+..++.+.|++++|+..+++++..... +...|..+..++...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 455667899999999999998876 667888888889999999999999999999887543 677788888899999999
Q ss_pred HHHHHHHHHHHHcC
Q 016681 145 ESALVVYEEMLKRG 158 (384)
Q Consensus 145 ~~a~~~~~~~~~~~ 158 (384)
++|...|+...+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988763
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.89 E-value=0.0072 Score=48.36 Aligned_cols=184 Identities=8% Similarity=0.020 Sum_probs=115.9
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAY---SLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT 168 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (384)
+...+-.....+...|++++|.+.|+++......+ .... -.+..++.+.++++.|...+++..+..+......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333345556677999999999999999865443 2222 3466788999999999999999988743333334444
Q ss_pred HHHHHHh--cC---------------C---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681 169 FIGAYCE--YG---------------K---IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 169 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
.+.+.+. .+ + ..+|++.|+.+.+. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 4444331 11 1 23455555555543 2432 2233444333333221
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (384)
-...--.+.+-|.+.|.+..|..-++.+.+. +.+......-.++.+|...|..++|.++...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011124667788899999999999999875 223345567788899999999999998877654
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.012 Score=52.57 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=8.7
Q ss_pred cCChhHHHHHHHHHHh
Q 016681 36 SDRNDLVWRIYQHMLE 51 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~ 51 (384)
-|++++|.++|-++.+
T Consensus 747 ~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADR 762 (1189)
T ss_pred hcchhHhhhhhhccch
Confidence 3555666665555443
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00016 Score=57.26 Aligned_cols=101 Identities=23% Similarity=0.211 Sum_probs=82.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
-+.+.+++.+|+..|..+++..+. |.+.|..-..+|.+.|.++.|++-.+..+... +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 366789999999999999987544 88888999999999999999999888887764 2345689999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681 322 ADKYFKIMKSHSLVPGVDIYESLVG 346 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~l~~ 346 (384)
|.+.|++.++. .|+..+|..=+.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHH
Confidence 99999988874 566666654433
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.0019 Score=48.77 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS--CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG 277 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (384)
.+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+.+..+..+. +...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444555555666666666665554332221 234455555555555555555555555543221 33444444444
Q ss_pred HHhcCCHH
Q 016681 278 YAKEGEIQ 285 (384)
Q Consensus 278 ~~~~~~~~ 285 (384)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 44444433
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0023 Score=57.11 Aligned_cols=137 Identities=12% Similarity=-0.030 Sum_probs=74.9
Q ss_pred CCCChhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 016681 229 LLPSCSAFNEMIRRLCECG-----NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE--------GEIQEVLKLYYEME 295 (384)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 295 (384)
.+.+...|...+++..... +...|..+|+++.+..+. ....|..+..++... .+...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445566666666543322 255667777777665322 233344333322211 11223333333332
Q ss_pred hc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 296 YK-SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 296 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22 122344556655555555677777777777777654 466667777777777777777777777776543
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0037 Score=55.78 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
..|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++....+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344444444444455555555555555433 344555555555555555555555555554443
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.81 E-value=0.00063 Score=51.56 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----------------CCHHHHHHH
Q 016681 127 DTIAYSLIVYAKVK-----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY----------------GKIEEANCL 185 (384)
Q Consensus 127 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 185 (384)
+..+|..+++.+.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44445555544442 244555555555555555555555555555554321 123557777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681 186 MQEMENAGLKPYDETFNLLIEGCAKAKR 213 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (384)
+++|...|+.||..++..+++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777766553
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.0012 Score=49.68 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
..|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++.....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444445555555555555555554432211 1234455555555556666666655555543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.75 E-value=0.0037 Score=43.47 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=40.9
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHh
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPN--EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQ 105 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 105 (384)
.++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++..... +. +......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHH
Confidence 344455555555555555555544322 2233444455555555555555555554432 11 11222222334444
Q ss_pred hcchHHHHHHHHHHH
Q 016681 106 EERIEEGMVLLKRML 120 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~ 120 (384)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555544433
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.74 E-value=0.0017 Score=45.14 Aligned_cols=100 Identities=18% Similarity=0.068 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLS--LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYP--NEATIRTLISALCKGGQLQT 76 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 76 (384)
+|+.++|+.+|+.....|+..+ ...+-.+.+.+...|++++|..+++........+ +......+.-++...|+.++
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE 93 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence 5899999999999999987654 4456678888999999999999999998763221 22233334456678899999
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 77 YVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
|++.+-..... +...|..-|..|.
T Consensus 94 Al~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 94 ALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 99998776532 2335554444443
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.73 E-value=0.0015 Score=49.59 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=64.3
Q ss_pred CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 016681 231 PSCSAFNEMIRRLCEC-----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG----------------EIQEVLK 289 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 289 (384)
.+-.+|..+++.+.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+.. +-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4778888888888754 566667777888888898889999999998886522 2344677
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 290 LYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
++++|...|+-||..++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 7777777777777777777777775554
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0037 Score=50.00 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE---GEIQEVLKL 290 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 290 (384)
.+....-++.-...++. |...|..|...|...|+.+.|..-|....+.. .+++..+..+..++... ....++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444444444444443 56666666666666666666666666666542 23555555555554432 234456666
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 291 YYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
|+++.... +.|..+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666553 344555555556666666666666666666664
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.008 Score=49.54 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=46.4
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChh-hH
Q 016681 134 IVYAKVKM-RNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-----PYDE-TF 201 (384)
Q Consensus 134 ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~ 201 (384)
+...|... |+++.|.+.|++..+. +.+ .-...+..+...+.+.|++++|.++|+++...... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445555 6677777766665442 100 01233455566677777777777777766553211 1111 12
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 202 NLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 202 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
-..+-++...||+..|...+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22223444456677777777766554
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.014 Score=45.37 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRY--PNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
.....+...|++.+|.+.|+.+....+. --....-.++.++-+.|+++.|...+++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344556777777777777777765322 12334555666677777777777777776654
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.00025 Score=43.55 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=35.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
...+...|++++|...|+.+++..+. +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556667777777777776665533 556666666666677777777777766654
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0073 Score=50.36 Aligned_cols=279 Identities=11% Similarity=-0.026 Sum_probs=149.6
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLES 146 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 146 (384)
.+.+..++..|+..+....+.. +.+...|..-...+...+++++|.--.+.-++.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 3444555666666666666554 444555555555666666666665544443332110 11111112222222222222
Q ss_pred HHHHHH---------------HHHHcC-CCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--H
Q 016681 147 ALVVYE---------------EMLKRG-FSANSFVYTTF-IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE--G 207 (384)
Q Consensus 147 a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~ 207 (384)
|.+.++ ...... -+|...++..+ ..++.-.|+.++|.+.--.+.+.+ ..+ .+...++ +
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~ 212 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLC 212 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccc
Confidence 222221 111111 12333344333 245667788888888877776644 122 2333332 2
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCCCh-h----------hHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCHHHHHH
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLLPSC-S----------AFNEMIRRLCECGNAKQANGMLTLALDK---GFSPNEITYSH 273 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 273 (384)
+.-.++.+.+...|.+.+..++.-.. . .+..-..-..+.|.+..|.+.+.+.+.. +..|+...|..
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 33456778888888887765432110 0 1111123355778999999999888764 34556677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhcc
Q 016681 274 LIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEK 351 (384)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 351 (384)
...+..+.|+..+|+.--+...+.. |. ...|..-..++...++|++|.+-++...+....+ ...++.....++-++
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 7778888999999998888877543 11 1222333345556788999999988887643221 234444444444433
Q ss_pred C
Q 016681 352 G 352 (384)
Q Consensus 352 g 352 (384)
.
T Consensus 371 k 371 (486)
T KOG0550|consen 371 K 371 (486)
T ss_pred h
Confidence 3
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0012 Score=52.53 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=48.3
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA 182 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (384)
+.+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|.+-.+........ -..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 33455555555555555554332 4444444455555555555555555444443111 233455555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHH
Q 016681 183 NCLMQEMENAGLKPYDETFNLLI 205 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~ 205 (384)
++.|++..+ +.|+..+|-.=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 555555444 234444444333
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.0028 Score=52.22 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=57.0
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-
Q 016681 238 EMIRRLCEC-GNAKQANGMLTLALDK----GFSP--NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-----LP- 304 (384)
Q Consensus 238 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~- 304 (384)
.+...|... |++++|.+.|++..+. + .+ -..++..+...+.+.|++++|.++|++........+ ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 334445555 6677777777665532 1 11 123455666677777888888888877765432211 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC--HhHHHHHHHHHh
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSHS--LVPG--VDIYESLVGIHL 349 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~ 349 (384)
.|-..+-++...||+..|...+++..... +..+ ......|+.++-
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 12223334555677888888887776542 2212 233445555543
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00043 Score=43.08 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=23.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc-chHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE-RIEEGMVLLKRM 119 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 119 (384)
+|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33333334444444444444444433333 233333444444444443 344444444333
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.0005 Score=42.17 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
.+.+.|++++|...|+++.+.. +-+...+..+..++...|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443 33444444444444444444444444444443
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00033 Score=43.59 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC-CHHHHHHHHHHHHh
Q 016681 304 PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG-NKAKALHLCEEMVS 366 (384)
Q Consensus 304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 366 (384)
.+|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|.+.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44555555555556666666666555554332 4455555555555555 45566555555543
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00053 Score=42.51 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681 72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
|++++|++.|+++.... |.+..++..+..++.+.|++++|.++++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444443332 22333333344444444444444444444333
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00036 Score=43.27 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=25.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
+.|++++|+++|+.+....+. +...+..+..++.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555544222 4444445555555555555555555555444
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.011 Score=47.41 Aligned_cols=122 Identities=15% Similarity=-0.024 Sum_probs=89.2
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR---NLESALVVYEEMLKR 157 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 157 (384)
++.-...+ +.|...|-.|...|...|+++.|..-|.+..+...+ +...+..+..++..+. ...++..+|+++...
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33334444 778899999999999999999999999998876432 6666666666655433 456788899998887
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681 158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG 207 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (384)
... |+.....+...+...|++.+|...++.|.+.. +|+ ..+..++..
T Consensus 223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~ie~ 269 (287)
T COG4235 223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLIER 269 (287)
T ss_pred CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHHHH
Confidence 433 67777778888899999999999999998865 343 445555543
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.027 Score=44.20 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH-----
Q 016681 95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF----- 169 (384)
Q Consensus 95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 169 (384)
+-+.++..+.-.+++.-....+++.++...+.++.....+.+.-.+.||.+.|...|+...+..-+.|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344556666666777777777777777665556667777777777777777777777766554333333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
...|.-++++..|...+.++...+ ..|....|.-.-+..-.|+...|.+.++.+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 233444556666666666665543 2233333332222333466666666666666653
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.49 E-value=0.0043 Score=51.67 Aligned_cols=133 Identities=14% Similarity=0.033 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHh----CCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh----cCC-CCCH
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMS----RKLL-PSCSAFNEMIRRLCECGNAKQANGMLTLALD----KGF-SPNE 268 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 268 (384)
..|..+-+.|.-.|+++.|+...+.-.. -|-. .....+..+..++.-.|+++.|.+.++.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455566666667788888766654322 1211 1234567777778888888888887765432 221 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYK-----SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.+.-+|...|.-..++++|+..+.+-... ...-....+.+|..++...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777788888777653211 1122345677788888888888888777665443
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.45 E-value=0.057 Score=45.96 Aligned_cols=355 Identities=14% Similarity=0.159 Sum_probs=181.9
Q ss_pred CcchHHHHHHHHHHHhcCCCCchh------hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccC
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLI------SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISA--LCKGG 72 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 72 (384)
.|++.+|.++|.++.+.- ..++. .-+.++++|...+ .+.....+..+.+.. |. ..|-.+..+ +-+.+
T Consensus 19 q~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~--~~-s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQF--GK-SAYLPLFKALVAYKQK 93 (549)
T ss_pred HhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhc--CC-chHHHHHHHHHHHHhh
Confidence 367889999999886652 22222 2345666665443 444444444444431 21 222222222 34567
Q ss_pred ChHHHHHHHHHHHhC--CCC------------CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 016681 73 QLQTYVDMLDRIHGK--RCS------------PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN----MIHDTIAYSLI 134 (384)
Q Consensus 73 ~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 134 (384)
.+..|.+.+...... +.. +|...-+..+.++...|++.++..+++++...= ...+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 888888877766543 211 122233456677888999999998888877643 33677788775
Q ss_pred HHHHHhc--------CCh-------HHHHHHHHHHHHc------CCCCChHHHHHHH-----------------------
Q 016681 135 VYAKVKM--------RNL-------ESALVVYEEMLKR------GFSANSFVYTTFI----------------------- 170 (384)
Q Consensus 135 l~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~----------------------- 170 (384)
+-.+.++ ... +.+.-+..++... .+.|.......++
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 4443321 111 1122112222111 1112111111111
Q ss_pred ---------------HHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681 171 ---------------GAYCEYGKIEEANCLMQEMENAGLKP----YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP 231 (384)
Q Consensus 171 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (384)
..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+...++..
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 11111 3333333333332211100 11456666666667777777766666554432221
Q ss_pred C--------hhhHHH-----------------------------------HHH---HHHhcCC-hHHHHHHHHHHHhcCC
Q 016681 232 S--------CSAFNE-----------------------------------MIR---RLCECGN-AKQANGMLTLALDKGF 264 (384)
Q Consensus 232 ~--------~~~~~~-----------------------------------l~~---~~~~~~~-~~~a~~~~~~~~~~~~ 264 (384)
. ..++.. ++. -+-+.|. -++|..+++.+.+-.
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft- 410 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT- 410 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-
Confidence 1 001100 110 1112233 566666666666532
Q ss_pred CCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhcCCCCChhh----HHHHHH--HHHhcCChHHHHHHHHHHhh
Q 016681 265 SPNEITYSHLI----GGYAK---EGEIQEVLKLYYEMEYKSISPTLPA----YTSLIS--SLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 265 ~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~--~~~~~g~~~~a~~~~~~~~~ 331 (384)
+-|..+-|.+. .+|.+ ...+.+...+-+-+.+.|++|-... -|.|.. -+...|++.++.-.-.-+.+
T Consensus 411 ~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ 490 (549)
T PF07079_consen 411 NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK 490 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 12333333322 22221 2334445555555566677664332 333333 24567888888776666655
Q ss_pred CCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 332 HSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 332 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+.|++.+|..+.-++....++++|..++..+.
T Consensus 491 --iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 491 --IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred --hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 67899999999999999999999999998763
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.026 Score=41.87 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-ANSFVYTT 168 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 168 (384)
.|++...-.|..++...|+..+|...|.+...--..-|......+.++....+++..|...++++.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666666666666666666655444445555666666666666666666666666554210 12223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH
Q 016681 169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL 218 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (384)
+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 556666666666666666666553 243333333333344555444443
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.037 Score=43.07 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
..+...|++.+|.+.|+.+...... --....-.++.++.+.|+++.|...++...+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555543111 1122233344555555666666555555544
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.029 Score=41.01 Aligned_cols=54 Identities=30% Similarity=0.359 Sum_probs=21.7
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEM 154 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 154 (384)
+..+...|++++|..++..+....+- +...|..+|.++...|+...|.++|+.+
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33333444444444444444443322 3444444444444444444444444443
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.11 Score=47.06 Aligned_cols=322 Identities=15% Similarity=0.123 Sum_probs=183.8
Q ss_pred hcCCCCchhhHHH-----HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHhCC
Q 016681 16 QRGFSLSLISFNT-----LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL--QTYVDMLDRIHGKR 88 (384)
Q Consensus 16 ~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~ 88 (384)
.-|++.+..-|.. +++-+...+.+..|+++-..+-..-.+ +...|.....-+.+..+. +++.+.+++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555544 456677778888898888777443222 256666666666665322 22333333222221
Q ss_pred CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------
Q 016681 89 CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI----HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG------ 158 (384)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 158 (384)
. ..-..|..+.+-....|+++.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.++-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 1 33456677777777889998888877643222111 122234455666777788887777776665431
Q ss_pred -----CCCChHHHHHHHH--------HHHhcCCHHHHHHHH--HHHH----HcCCCCChhhHHHHHHHHHhcCch-----
Q 016681 159 -----FSANSFVYTTFIG--------AYCEYGKIEEANCLM--QEME----NAGLKPYDETFNLLIEGCAKAKRI----- 214 (384)
Q Consensus 159 -----~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~----~~~~~~~~~~~~~l~~~~~~~~~~----- 214 (384)
.+.....|.-+++ .+.+.++-..+..-| +... ..+..| ........+.+....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHH
Confidence 1111122222221 011111211111111 1100 012222 233334444444331
Q ss_pred -----HHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 016681 215 -----EESLSYCEQMMSR-KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVL 288 (384)
Q Consensus 215 -----~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (384)
.+-+++.+.+... +.....-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++.+
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 1222223333222 323344455666677788899999998877665 468999999999999999999887
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 016681 289 KLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 361 (384)
++-+..+ ++.-|..++.+|.+.|+.++|.+++-+.... .....+|.+.|++.+|.++-
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 7665443 2567888999999999999999998765431 14667788888888877654
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.33 E-value=0.041 Score=48.94 Aligned_cols=37 Identities=5% Similarity=0.076 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
.-++++.++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 34556667777676644 33455667777777777743
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.0039 Score=45.67 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH-----cCCCCCHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR-----KNMIHDTIAYS 132 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 132 (384)
+...++..+...|+++.|..+.+.+.... |-+...|..+|.++...|+...|.+.|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556667778999999999999999887 78899999999999999999999999998754 48888876643
No 201
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.29 E-value=0.0073 Score=42.46 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHhHHHHHHHHHh
Q 016681 298 SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-HSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 349 (384)
...|+..+..+++.+|+..|++..|.++++...+ .++..+..+|..|+....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4567788888888888888888888888887765 567777788888876644
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.0066 Score=50.65 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCh
Q 016681 234 SAFNEMIRRLCECGNAKQANGMLTLAL----DKGFS-PNEITYSHLIGGYAKEGEIQEVLKLYYEMEY----KSI-SPTL 303 (384)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 303 (384)
..|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 355666666667789999887665432 22221 1345677888899999999999999886532 221 1122
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh----C-CCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 304 PAYTSLISSLCQCGKLEEADKYFKIMKS----H-SLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
...-+|...|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+.-++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344577777777889999988875432 1 11124677889999999999999999888776543
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.13 Score=46.32 Aligned_cols=122 Identities=10% Similarity=-0.078 Sum_probs=56.9
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH----------HHHccCChHHHHHHHHHHHhCCC
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLIS----------ALCKGGQLQTYVDMLDRIHGKRC 89 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~ 89 (384)
.|.+..|..+.......-.++.|...|-+.... |.......|-. .-+--|++++|.++|-.+-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 366677777776666666666666666554332 11111111111 1112356666666666554433
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK-NMIHDTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
..+..+.+.|++-.+.++++.--.. +-..-..+|+.+...++....|++|.++|..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334445555555544444321000 0000123455555555555555555555543
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.26 E-value=0.0095 Score=48.11 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=35.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHhHHHHHHHHHhccCC
Q 016681 280 KEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLV--PGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 353 (384)
+.|++++|...|+.+.+.. |+. .++-.+...|...|++++|...|+.+.+.-+. .....+..+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 3344444444444444432 221 23333444444445555555555444432110 112223333344444455
Q ss_pred HHHHHHHHHHHHh
Q 016681 354 KAKALHLCEEMVS 366 (384)
Q Consensus 354 ~~~a~~~~~~~~~ 366 (384)
.++|..+++++++
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.098 Score=43.73 Aligned_cols=286 Identities=16% Similarity=0.131 Sum_probs=182.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH--HhhcchHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCC
Q 016681 70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI--IQEERIEEGMVLLKRMLRKNMIHDTIAYSL----IVYAKVKMRN 143 (384)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~ 143 (384)
-.|+-..|.++-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|... +.+-.. |.-..-+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhccc
Confidence 357777887777665432 234444444454433 3579999999999999863 333222 2223346789
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChh--hHHHHHHHHHh---cCchHHH
Q 016681 144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPYDE--TFNLLIEGCAK---AKRIEES 217 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~---~~~~~~a 217 (384)
.+.|..+-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-.. ..+...|
T Consensus 170 reaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 99999888877665322 45677889999999999999999998766543 333332 22233322211 1245555
Q ss_pred HHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681 218 LSYCEQMMSRKLLPSCS-AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY 296 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (384)
...-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+..+.|+ .+...+ ..+.|+. +..-+++..+
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~--~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYV--RARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHH--HhcCCCc--HHHHHHHHHH
Confidence 5555554443 34432 223345788999999999999999998855554 333322 3455553 3333333221
Q ss_pred c-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH-hccCCHHHHHHHHHHHHhCCCCCC
Q 016681 297 K-SISP-TLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH-LEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 297 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
. .++| +....-.+.++-...|++..|..--+.... ..|....|..|.+.- ...|+-.++..++.+.++.--.|+
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 1 1233 455666677888889999998887776665 457778888887775 456999999999999988765564
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.016 Score=46.86 Aligned_cols=99 Identities=8% Similarity=0.036 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHH
Q 016681 130 AYSLIVYAKVKMRNLESALVVYEEMLKRGFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--LKPYDETFNLLI 205 (384)
Q Consensus 130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 205 (384)
.|...+....+.|++++|...|+.+.+.-... ....+-.+..+|...|++++|...|+.+.+.- -+.....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444433444566666666666665542111 02344455566666666666666666665431 111123333344
Q ss_pred HHHHhcCchHHHHHHHHHHHhCC
Q 016681 206 EGCAKAKRIEESLSYCEQMMSRK 228 (384)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~ 228 (384)
..+...|+.++|..+|+.+.+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666553
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.19 E-value=0.12 Score=44.14 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH-HHHHH
Q 016681 234 SAFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY-TSLIS 311 (384)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 311 (384)
.+|...+....+....+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+--... -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777778888899999999998887 5678888999998776 57788889998865544 2444444 45566
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 312 SLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
-+.+.++-+.|..+|+..+++ +..+ ..+|..+|..-..-|+...+..+-++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888889999999866542 1112 46788888888888888777776666654
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.19 E-value=0.0023 Score=40.25 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.++...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555444 344445555555555555555555555555543
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.057 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhh
Q 016681 124 MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDET 200 (384)
Q Consensus 124 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 200 (384)
..|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++.+.. -.| .+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cc
Confidence 3466666777888899999999999999888776566678888888888889999999999998887653 233 44
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
.-.+...+...|.+.+|...|+.....-+.|....+ ....+.+.|+.+++..-+..+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence 566677888889999999999988876544443333 344456677666555444333
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0023 Score=40.25 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 277 GYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
.|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4445555555555555555543 234444444555555555555555555555544
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.12 Score=43.53 Aligned_cols=259 Identities=9% Similarity=-0.033 Sum_probs=148.5
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
..+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.+.-.+.. +-........-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 4455666778888888888776442 45555555555666666766655554443332 111122222223333333333
Q ss_pred HHHHHHH---------------HHHHcCC-CCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681 111 EGMVLLK---------------RMLRKNM-IHDTIAYSLI-VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY 173 (384)
Q Consensus 111 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (384)
+|.+.++ ....... +|...++..+ ..++.-.++.++|.++--..++.... +....-.--.++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence 3333222 2211111 1223333333 24566778888888887777665221 222222222344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhH-------------HHHHHHHHhcCchHHHHHHHHHHHhCC---CCCChhhHH
Q 016681 174 CEYGKIEEANCLMQEMENAGLKPYDETF-------------NLLIEGCAKAKRIEESLSYCEQMMSRK---LLPSCSAFN 237 (384)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 237 (384)
.-.++.+.+...|++....+ |+...- ..-.+-..+.|.+..|.+.|.+.+..+ ..++...|.
T Consensus 214 yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 45677888888888877644 433221 111233457788999999999887753 445566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEI-T--YSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
....+..+.|+..+|+.--+...+. |.. . +..-..++.-.+++++|.+-++...+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777888899999999888877764 332 2 2222344556788899998888876653
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=97.14 E-value=0.026 Score=41.17 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=65.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 319 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 319 (384)
..-+...|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33455778888888888887765543 566677777777778888888888887655542 3444455567788888888
Q ss_pred HHHHHHHHHHhh
Q 016681 320 EEADKYFKIMKS 331 (384)
Q Consensus 320 ~~a~~~~~~~~~ 331 (384)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 213
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.14 Score=42.86 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
+.+..+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++..++-.. . -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44455666667777777776655542 35777788888888888888777665432 1 23467777888888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHH
Q 016681 315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHL 360 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 360 (384)
+.|+..+|..++.++ . +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 888888877777662 1 13345556666777666554
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.00 E-value=0.0024 Score=40.85 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh----CCCC-CC-HhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKS----HSLV-PG-VDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+++.+...|...|++++|+..|++..+ .|.. |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455556666666666666666665543 1111 11 3445566666666666666666666654
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.00 E-value=0.018 Score=40.49 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=64.5
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
|..++..++.++++.|+.+....+++..-.-++..... .+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566677777777777777666665543222111000 000 1112345688999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHh
Q 016681 277 GYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQ 315 (384)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 315 (384)
+|+..+++..|+++.+...+. +++.+..+|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654 677778888888875443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.18 Score=42.75 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 232 SCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
+--.+..++.+..-.|+.++|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445566777777788888888888887765
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.95 E-value=0.021 Score=41.69 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=55.3
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA 147 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 147 (384)
+-..|++++|..+|+-+...+ +-+...|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345677777777777766555 455666666666666777777777777765544332 334444455666777777777
Q ss_pred HHHHHHHHH
Q 016681 148 LVVYEEMLK 156 (384)
Q Consensus 148 ~~~~~~~~~ 156 (384)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777766665
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.24 Score=41.99 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCCChhhH
Q 016681 163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDETFNLLIEGCAK---AKRIEESLSYCEQMMSRKLLPSCSAF 236 (384)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 236 (384)
..+...++-+|....+++...++.+.+.... +.-+...--...-++.+ .|+.++|+.++..+......+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344455556777778888888888877642 11111222233344445 67788888888776655556677777
Q ss_pred HHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HHhcCC
Q 016681 237 NEMIRRLCEC---------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE----IQEVLKLY---YE-MEYKSI 299 (384)
Q Consensus 237 ~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~~ 299 (384)
..+.+.|-.. ...++|...|.+.-+. .|+..+--.++..+...|. ..+..++- .. +.+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 7777665321 1244555555544433 2333222222222222222 11222222 11 112222
Q ss_pred C---CChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 300 S---PTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 300 ~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
. .+.-.+..++.+..-.|++++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 22223345555666666666666666666654
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.84 E-value=0.33 Score=43.54 Aligned_cols=87 Identities=10% Similarity=0.062 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH---------
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEI--------- 269 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------- 269 (384)
.+...+...+.+...+.-|.++|..|-.. ..+++.....+++++|..+-+...+. .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 33444444444555566666666655321 23455556667777776665544332 22211
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681 270 --TYSHLIGGYAKEGEIQEVLKLYYEMEY 296 (384)
Q Consensus 270 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (384)
-|...-.+|.+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223345555666666666655543
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.77 E-value=0.065 Score=46.95 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=84.6
Q ss_pred HHhhcCChhHHHHHHH--HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 32 VVTKSDRNDLVWRIYQ--HMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 32 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
...-.++++++.+... .+.. .+ +....+.++..+-+.|..+.|+++... +. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3445666777655553 1111 11 244566677777777777777766322 21 233445567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
+.|.++.++. .+...|..|.....+.|+++-|++.|.+.. -+..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 7776654332 256677777777777777777777776543 2455666677777777777777666
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681 190 ENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
...|- ++....++.-.|+.++..+++.+.
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66653 333334444456666666665543
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.73 E-value=0.28 Score=41.16 Aligned_cols=284 Identities=12% Similarity=0.042 Sum_probs=177.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681 36 SDRNDLVWRIYQHMLENIRYPNEATIRTLISA--LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM 113 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 113 (384)
.|+-..|.++-.+..+. +..|..-+..++.+ -.-.|+.+.|.+-|+.|.... +....-...|.-..-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHH
Confidence 46777777766554432 23344444444443 344699999999999998632 111222233333445678888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHH--HHHHHHHH--H-hcCCHHHHHHHHH
Q 016681 114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFV--YTTFIGAY--C-EYGKIEEANCLMQ 187 (384)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--~-~~~~~~~a~~~~~ 187 (384)
.+-++.-..-.. -...+...+...+..|+++.|+++.+.-++.. +.++..- -..|+.+- . -..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 888877665433 45677888999999999999999998876542 3333221 12222221 1 1224555555554
Q ss_pred HHHHcCCCCChh-hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC
Q 016681 188 EMENAGLKPYDE-TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK-GFS 265 (384)
Q Consensus 188 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~ 265 (384)
+..+ +.|+.. .-..-..++.+.|+..++-.+++.+.+..+.|+ .+. +-...+.|+ .+..-+++..+. ..+
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcC
Confidence 4443 445532 233445778899999999999999999876555 222 222334444 344444433321 122
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHhhC
Q 016681 266 P-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ-CGKLEEADKYFKIMKSH 332 (384)
Q Consensus 266 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 332 (384)
| +..+...+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+-+..+.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 5566667777777889998887776666543 6888888877775544 59999999999888764
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.71 E-value=0.0079 Score=38.39 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=9.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 016681 167 TTFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~ 188 (384)
..+..++...|++++|++.+++
T Consensus 50 ~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 50 NNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333444444444444444433
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.13 Score=44.22 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT--IAYSLIVYAKVKMRNLESALVVYEEMLK 156 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 156 (384)
...++.+..+|.+.|++++|+..|++.++....... .+|..+..+|.+.|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444455555555555555555554443222110 2344444455555555555555554444
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.60 E-value=0.41 Score=42.70 Aligned_cols=178 Identities=14% Similarity=0.119 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc------HHhHHHHHHHHHh----hcchHH
Q 016681 42 VWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM------VIVNTSLILRIIQ----EERIEE 111 (384)
Q Consensus 42 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~----~~~~~~ 111 (384)
..-+|.-+..- ++| .+..++....-.|+-+.+++.+.+..+.+--.. .-.|+..+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 222 344556666667787888887777655331111 1233333333332 345678
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 112 GMVLLKRMLRKNMIHDTIAYSL-IVYAKVKMRNLESALVVYEEMLKRG---FSANSFVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
|.++++.+.+.- |+...|.. -.+.+...|++++|.+.|+...... .+.....+--+.-.+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 888888887763 45544443 3355667788888888888655321 11123334445666777888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHH-HHhcCch-------HHHHHHHHHHHh
Q 016681 188 EMENAGLKPYDETFNLLIEG-CAKAKRI-------EESLSYCEQMMS 226 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 226 (384)
.+.+.. ..+..+|.-+..+ +...++. ++|.++|.+...
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888765 3344444433333 3345555 778888877654
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.067 Score=44.89 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 016681 268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI 347 (384)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 347 (384)
..+++.+..++.+.+++.+|+...++.+..+ ++|....-.-.+++...|+++.|+..|+++.+..+. |...-..++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3467778888889999999999999988876 567777777788899999999999999999986443 44445555555
Q ss_pred HhccCCH-HHHHHHHHHHHhC
Q 016681 348 HLEKGNK-AKALHLCEEMVSE 367 (384)
Q Consensus 348 ~~~~g~~-~~a~~~~~~~~~~ 367 (384)
-.+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 4444443 3457788888754
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.34 Score=39.11 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=107.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
.......|++.+|..+|+........ +......++..+...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34567889999999999998886443 45677788899999999999999999987553222222223345566666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR--GFSANSFVYTTFIGAYCEYGKIEEANCLM 186 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (384)
.+...+-.++-.. . -|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+...|.-+.+...+
T Consensus 220 ~~~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 6666666665543 1 16666677788888999999999887777554 444 6777888888888888554444333
No 227
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.32 Score=38.54 Aligned_cols=137 Identities=12% Similarity=0.015 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLI--- 275 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 275 (384)
...+.++..+.-.+.+.-....++++++...+.++.....+.+.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556667777778888888999999998877788899999999999999999999999877643334444444433
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 276 --GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 276 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
..|.-.+++..|...+.+..... +.|+...|.-.-+..-.|+...|.+.++.|....+.|
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34445678888888888887664 3445555555555556789999999999998865443
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.47 E-value=0.15 Score=43.87 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
+...++.+..+|...|++++|+..|++..+.+ +.+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678888888888888888888888877764 2233 35788888888888888888888888775
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.40 E-value=0.19 Score=35.12 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681 271 YSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL 334 (384)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 334 (384)
....+..+...|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444444555555555555555554322 34455555555555555555555555555555543
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.23 Score=41.17 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYY 292 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~ 292 (384)
.+-.|...|.+..++++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444444444444444444333
No 231
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.35 E-value=0.16 Score=44.52 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=90.8
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA 147 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 147 (384)
..-.++++++.++.+.-.-.. .-+....+.++..+-+.|..+.|+++...-. .-.....+.|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 344677777666664111000 1124456777777788888888877544321 123455677888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
.++.++ ..+...|..|.....+.|+++-|++.|++..+ +..++-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 765433 22667888888888888888888888876432 555666677778877777777766665
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTL 258 (384)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (384)
| -++....++.-.|+.++..+++..
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 245555555666777777666643
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.26 E-value=0.52 Score=38.83 Aligned_cols=164 Identities=11% Similarity=0.061 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCch---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 200 TFNLLIEGCAKAKRI---EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
+...++.+|...+.. ++|..+++.+...... .+..+..-++.+.+.++.+.+.+++.+|...- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 455566666665543 3455555566444322 34455555666666777888888888877652 212334444444
Q ss_pred HHH--hcCCHHHHHHHHHHHHhcCCCCChh-hHH-HHHHH---HHhcCC------hHHHHHHHHHHhh-CCCCCCHhHHH
Q 016681 277 GYA--KEGEIQEVLKLYYEMEYKSISPTLP-AYT-SLISS---LCQCGK------LEEADKYFKIMKS-HSLVPGVDIYE 342 (384)
Q Consensus 277 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~-~l~~~---~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~~~ 342 (384)
.+. .......+...+..+....+.|... ... .++.. ..+.++ .+....++....+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 442 1233445666666655444444443 111 11111 112111 3344444443322 22233333322
Q ss_pred H---H----HHHHhccCCHHHHHHHHHHHH
Q 016681 343 S---L----VGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 343 ~---l----~~~~~~~g~~~~a~~~~~~~~ 365 (384)
. + ...+.+.+++++|.++|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 2 334567899999999988544
No 233
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.24 E-value=0.58 Score=39.19 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY 278 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (384)
.+.+..+.-+...|+...|.++-.+. -.|+...|..-+.+++..+++++...+... .-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555566777888888887776665 236889999999999999999988776432 12457899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
.+.|+..+|..+..+ ..+..-+..|.+.|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988876 1225577888999999999776543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.17 Score=42.59 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=71.4
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
..+.+.|++..|..-|++.+..=. +.+.-+.++... .. ..-..+++.+.-++.+.+++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~-~~-------~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKK-AE-------ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHH-HH-------HHHHHHhhHHHHHHHhhhhHH
Confidence 567888999999988888765300 000001111111 11 111334455555666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE-EANCLMQEM 189 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~ 189 (384)
.|++..+..+..+.. |....-.-..++...|+++.|...|+++.+..+. |...-+.++.+-.+..... ...++|..|
T Consensus 275 ~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665432 5555555556666666666666666666654221 3333333433333333332 234555555
Q ss_pred HH
Q 016681 190 EN 191 (384)
Q Consensus 190 ~~ 191 (384)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 43
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.23 E-value=0.53 Score=41.99 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHH
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC------SAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEI 269 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 269 (384)
.+..+++...=.|+-+.+++.+.+..+.+-.-.+ -.|..++..++. ..+.+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4566666666778888888888876654211121 123334433333 35678899999998876 46666
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHhcC--C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 270 TYSHLI-GGYAKEGEIQEVLKLYYEMEYKS--I-SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 270 ~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
.|...- +.+...|++++|.+.|++..... . ......+.-+...+.-..+|++|...|..+.+..- .+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 665443 45557899999999999765321 1 12334556677778889999999999999988532 2444454443
Q ss_pred HH-HhccCCH-------HHHHHHHHHHHh
Q 016681 346 GI-HLEKGNK-------AKALHLCEEMVS 366 (384)
Q Consensus 346 ~~-~~~~g~~-------~~a~~~~~~~~~ 366 (384)
.+ +...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 5567777 888888887654
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.23 E-value=0.68 Score=39.83 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=79.4
Q ss_pred HhcCc-hHHHHHHHHHHHhCCCCCChhhHHHH----HHHHHh---cCChHHHHHHHHHHHhcCCCCCH----HHHHHHHH
Q 016681 209 AKAKR-IEESLSYCEQMMSRKLLPSCSAFNEM----IRRLCE---CGNAKQANGMLTLALDKGFSPNE----ITYSHLIG 276 (384)
Q Consensus 209 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 276 (384)
-+.|. -++|+.+++.+.+-..- |...-|.+ =.+|.+ ...+.+-..+-+-+.+.|++|-. ..-|.+.+
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 34444 67788888777664211 32222222 222322 23455555555666677877643 33444433
Q ss_pred H--HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHH
Q 016681 277 G--YAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYES 343 (384)
Q Consensus 277 ~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 343 (384)
+ +...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 3 3467888888765555544 5799999999999999999999999999864 456666654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.21 Score=40.92 Aligned_cols=154 Identities=14% Similarity=0.002 Sum_probs=92.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-C--CCCChhhHHHHHHHHHhcCChHH
Q 016681 175 EYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR-K--LLPSCSAFNEMIRRLCECGNAKQ 251 (384)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~ 251 (384)
..|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++... + .+..........-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456677777777777654 3555566666667777778777777777776654 2 21112233334445567788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 252 ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK---SISPTLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
|++.-++..+.+. .|...-.+....+.-.+++.++.++..+-... +.-.-...|....-.+...+.++.|.++|++
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888777776543 25555566666666777777777766554322 1111122344444455566778888888865
Q ss_pred Hh
Q 016681 329 MK 330 (384)
Q Consensus 329 ~~ 330 (384)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.20 E-value=0.13 Score=40.96 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR 213 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (384)
+=++.++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3467888888888888888888888888877664
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1 Score=41.33 Aligned_cols=305 Identities=11% Similarity=0.049 Sum_probs=167.1
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCCh--hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN--DLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
+.|..|+++-.++...-... ...|......+.+..+. +++.+..++=..... -...+|..+.+..-..|+++.|..
T Consensus 451 ~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred chhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 45777888888775442222 55666666666665432 223333332222212 244567777777778899999988
Q ss_pred HHHHHHhCCC----CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-----------CCCHHHHHHHHH--------
Q 016681 80 MLDRIHGKRC----SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM-----------IHDTIAYSLIVY-------- 136 (384)
Q Consensus 80 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~-------- 136 (384)
+++.=...+. -.+..-+...+.-...+|+.+....++-.+.+.-. +.....|.-+++
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~ 608 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLY 608 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhh
Confidence 8775322210 01222333445556667777777666666654311 001111111111
Q ss_pred HHHhcCChHHHHHHH--HHHHHc-CCCCChHHHHHHHHHHHhcCCHHHH----------HHHHHHHHH-cCCCCChhhHH
Q 016681 137 AKVKMRNLESALVVY--EEMLKR-GFSANSFVYTTFIGAYCEYGKIEEA----------NCLMQEMEN-AGLKPYDETFN 202 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~-~~~~~~~~~~~ 202 (384)
.+...++-..+...| +..... .+.+-........+.+.+.....-. +.+.+.+.. .|..-..-+.+
T Consensus 609 d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~ 688 (829)
T KOG2280|consen 609 DFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH 688 (829)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH
Confidence 011111111111111 110000 0111222233344455544432111 122222222 12223334555
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG 282 (384)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (384)
--+.-+...|+..+|.++-.+.. .||-..|-.=+.+++..+++++-+++-+... ++.-|.-++.+|.+.|
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 55666777888888888766653 3688889888999999999988776654433 3566788999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
+.++|.+.+.+.... .-...+|.+.|++.+|.++--
T Consensus 759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 999999988664321 157788999999999877654
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.13 E-value=0.019 Score=31.72 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHH
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYES 343 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 343 (384)
++..+...|.+.|++++|.++|+++++..+. |...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 3444555555666666666666665554433 3444433
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.01 E-value=0.37 Score=34.85 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA 279 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (384)
....++..+.+.+.+.....+++.+...+. .+...++.++..|++.+. .+....+.. . .+......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHH
Confidence 355677778777888899999998888764 577788888888887643 334444432 1 23444556778888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc
Q 016681 280 KEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE 350 (384)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (384)
+.+.++++..++.++.. +...+..+... ++++.|.+++++- .+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 88888888888876532 22233333333 7788888877751 266678877776654
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.17 Score=40.26 Aligned_cols=96 Identities=23% Similarity=0.187 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC-CHhHHHHHH
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSI--SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL-VP-GVDIYESLV 345 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~ 345 (384)
.|+.-+..+ +.|++..|..-|....+... .-....+-.|..++...|+++.|..+|..+.+.-+ .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 45556667666666665521 01122344466666777777777777766655211 11 235555666
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 016681 346 GIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~~~~ 366 (384)
....+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 666677777777777777655
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.66 Score=37.57 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=53.2
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA 147 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 147 (384)
....|++.+|...|+...... +.+....-.+..+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555555555555555443 3334444555555556666666655555544332111111111222333333333333
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
..+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333332221 11333444445555555555555555444433
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.32 Score=39.97 Aligned_cols=153 Identities=10% Similarity=-0.010 Sum_probs=93.3
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcc
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEER 108 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 108 (384)
+.-+|++.+|-..++++++. .+-|...+...=+++.-.|+.+.-...++++...- .++. .....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34567777777777777765 33366666666677777787777777777776441 2332 333334445567788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR---GFSANSFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
+++|++.-++..+-+.. |...-......+-..++..++.+...+-... +--.-..-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888877777765433 6666666667777777777777766543221 1111112233333445556778888888
Q ss_pred HHH
Q 016681 186 MQE 188 (384)
Q Consensus 186 ~~~ 188 (384)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 754
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.95 E-value=0.14 Score=40.86 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681 285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK 318 (384)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 318 (384)
+-+++++++|...|+-||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3477888888888888888888888888877664
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.85 E-value=0.033 Score=30.76 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=8.5
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 016681 65 ISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 65 ~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
...+.+.|++++|.++|+++.+
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.85 E-value=0.84 Score=37.61 Aligned_cols=120 Identities=15% Similarity=0.073 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHH-------HhhcC-ChhHHHHHHHHHHhc--------CCCCCH-----HH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHV-------VTKSD-RNDLVWRIYQHMLEN--------IRYPNE-----AT 60 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-----~~ 60 (384)
|+++.|..++.+........++.....+.+. ..+.+ +++.|..++++..+. ...|+. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 6777888888877653212222222222222 22333 666666655554432 111221 23
Q ss_pred HHHHHHHHHccCChH---HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 61 IRTLISALCKGGQLQ---TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
+..++.++...+..+ +|.++++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444445554444332 2333444443222 222333333444444455555555555555554
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.23 Score=45.85 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=9.4
Q ss_pred cCCHHHHHHHHHHHHh
Q 016681 281 EGEIQEVLKLYYEMEY 296 (384)
Q Consensus 281 ~~~~~~a~~~~~~~~~ 296 (384)
.+++.....+++.|.+
T Consensus 574 ~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 574 SQNYQILLNFLESMSE 589 (933)
T ss_pred ccCHHHHHHHHHHHHh
Confidence 3456666666665654
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.80 E-value=0.28 Score=34.18 Aligned_cols=91 Identities=16% Similarity=0.053 Sum_probs=58.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH---HHHHHHHhcCC
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYT---SLISSLCQCGK 318 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~ 318 (384)
++...|+.+.|++.|.+....-+ -....||.-..++.-.|+.++|++-+++..+..-.-+..... .-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45667778888887777776532 366777777777777777787777777776653222222222 22234556677
Q ss_pred hHHHHHHHHHHhhCC
Q 016681 319 LEEADKYFKIMKSHS 333 (384)
Q Consensus 319 ~~~a~~~~~~~~~~~ 333 (384)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777777665
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=95.80 E-value=1.2 Score=38.85 Aligned_cols=163 Identities=10% Similarity=0.048 Sum_probs=101.2
Q ss_pred hhH--HHHHHHHHhc-----CchHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 016681 199 ETF--NLLIEGCAKA-----KRIEESLSYCEQMMSR-KLLPS-CSAFNEMIRRLCE---------CGNAKQANGMLTLAL 260 (384)
Q Consensus 199 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 260 (384)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++.+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 5555554432 2456788888888722 23333 3444444333322 223456667777777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHh
Q 016681 261 DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVD 339 (384)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 339 (384)
+.+.. |......+..+....++++.|...|++....+ +....+|......+..+|+.++|.+.+++..+..+.- -..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77544 77777777777777888999999999988765 2334455556666777899999999999877654321 223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 340 IYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
+....+..|+.++ .++|.+++-+-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 3344455666655 56777776543
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.68 E-value=1.3 Score=38.55 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
..+|.+.-++..+.+ +.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555 555555555555555555566666666665554322 333444444444455666666666665
Q ss_pred HHHc
Q 016681 154 MLKR 157 (384)
Q Consensus 154 ~~~~ 157 (384)
..+.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 4443
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.67 E-value=1.2 Score=38.31 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
..+|...++...+..-.+.|..+|-+..+.+ +.++...+++++..++ .|+...|..+|+.-...-.. +..-....+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 3456666777777777788888888887777 5566677777777665 46677777777765554222 2333345566
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
-+...++-+.|..+|+...++ +..+ ...|..+|..-..-|+...+..+-++|.+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 667777888888888755432 1112 456777777777777777777666666554
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.66 E-value=0.46 Score=33.26 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681 130 AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194 (384)
Q Consensus 130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (384)
.....+..+.+.|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444455555666666666666655542 234555555666666666666666666666665553
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.35 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 169 FIGAYCEYGKIEEANCLMQEMENAG-LKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
|..++...|++++|..+|..+.+.- -.| -...+--+..+..+.|+.++|..+|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444555555555555554444321 011 1133333444444455555555555555444
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.8 Score=35.96 Aligned_cols=203 Identities=13% Similarity=0.075 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK 210 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (384)
|.....+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+.. --...|......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 444445566666777777666555421 111222221 1223344444444444321 111334444555556
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK---GF--SPNEITYSHLIGGYAKEGEIQ 285 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 285 (384)
.|.++.|-..+++.-+. ....+++.|++++++.... +- ..-...+...-+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 66555555544443221 1122334444444333211 00 001123333444455555555
Q ss_pred HHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHhHHHHHHHHHhccCCHHHH
Q 016681 286 EVLKLYYEMEYK----SISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHS---LVPGVDIYESLVGIHLEKGNKAKA 357 (384)
Q Consensus 286 ~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 357 (384)
+|-..+.+-... .-.++ -..|-..|-.+....++..|...++.-.+.+ -.-+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 554444332111 00111 1223444444555566777777766643321 112445566666555 44555555
Q ss_pred HHH
Q 016681 358 LHL 360 (384)
Q Consensus 358 ~~~ 360 (384)
..+
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 444
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.58 E-value=0.44 Score=33.26 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCC
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL---IVYAKVKMRN 143 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~ 143 (384)
+++..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|++-+++..+..-.-....... -...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556667777777776665543 45566666666666666666666666666555321112222211 1223444555
Q ss_pred hHHHHHHHHHHHHcC
Q 016681 144 LESALVVYEEMLKRG 158 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~ 158 (384)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 566655555554443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.48 E-value=0.63 Score=33.62 Aligned_cols=126 Identities=9% Similarity=0.097 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 4456666666777777777777777665 355567777777777653 3333444432 1 233344556666777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
.+-++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777666655432 11222333333 6666666666541 24456665555544
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=1.7 Score=38.12 Aligned_cols=163 Identities=12% Similarity=0.113 Sum_probs=85.4
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE 106 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (384)
.+|.-.-+.++++.-++.-.+.++. .||.. .|..|.. -......++.+++++..+.+ ...+. +.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg----E~~lg-------~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLAE--EEASTIVEAEELLRQAVKAG----EASLG-------KS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH----HHhhc-------hh
Confidence 3444445555666555555555552 34432 2322221 22345677888887766543 11110 00
Q ss_pred cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHH
Q 016681 107 ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 107 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
......-..++....+...|-..+-..+..++-+.|+.++|.+.+.++.+.... -+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000000011122222222223333345666777888888888888888764222 2344667788888888888888888
Q ss_pred HHHHHHcCCCCCh-hhHHHHH
Q 016681 186 MQEMENAGLKPYD-ETFNLLI 205 (384)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~l~ 205 (384)
+.+-.+...+.+. ..|+..+
T Consensus 318 L~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHhccccCCchHHHHHHHHH
Confidence 8887554332222 3455544
No 259
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.38 E-value=0.78 Score=34.05 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=59.1
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
.++.+.+.+++|+...+..++..+.+.|++.. +..+.+.++-+|.......+-.+. +....+.++--+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34444455555666666666666666555432 333444444444444433332111 2223333333333322
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 016681 160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMS 226 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (384)
=...+..++..+...|++-+|.++.+...... ......++++..+.+|...-..+++-..+
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01133445555556666666666555432211 12223444555555555444444444433
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.35 E-value=1.3 Score=36.95 Aligned_cols=227 Identities=12% Similarity=0.124 Sum_probs=120.2
Q ss_pred hhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHhCC-CCCcHHhHHHHHHHHHhh
Q 016681 34 TKSDRNDLVWRIYQHMLENI--RYPNEATIRTLISALCKGGQLQTYVDML----DRIHGKR-CSPMVIVNTSLILRIIQE 106 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~~ 106 (384)
....+.++|+..|.+-+.+- ......++..+..+.++.|.+++++..- +-..+.. ..---..|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554430 1112335556666677777666654332 1111110 001123344455555555
Q ss_pred cchHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHhcC
Q 016681 107 ERIEEGMVLLKRMLRK-NMIH---DTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-----FSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 107 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 177 (384)
-++.+++.+-+.-... |..| .-....++..++.-.+.++.+++.|+...+.. ......++..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5555555555443322 2222 11233446667777778888888888776531 1123456778888888888
Q ss_pred CHHHHHHHHHHHHH----cCCCCChhhHH-----HHHHHHHhcCchHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHH
Q 016681 178 KIEEANCLMQEMEN----AGLKPYDETFN-----LLIEGCAKAKRIEESLSYCEQMMSR----KLLP-SCSAFNEMIRRL 243 (384)
Q Consensus 178 ~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 243 (384)
++++|.-+..+..+ .++..-..-|. .+.-++...|....|.+..++..+. |-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 88888766655432 12111111222 2334556677777777766665432 3211 233445566777
Q ss_pred HhcCChHHHHHHHHHHH
Q 016681 244 CECGNAKQANGMLTLAL 260 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~ 260 (384)
-..|+.+.|..-++...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 78888888877776654
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.33 E-value=0.33 Score=39.32 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=59.5
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK-----RGFSANSFVYT 167 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 167 (384)
..++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|...|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456667777788888888888888888877544 777788888888888888888888877755 37777777776
Q ss_pred HHHHH
Q 016681 168 TFIGA 172 (384)
Q Consensus 168 ~l~~~ 172 (384)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66666
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.14 E-value=0.42 Score=38.76 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhHHHHH
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDIYESL 344 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 344 (384)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444455555555555555555555443 33445555555555555555555555554433 3555555544444
Q ss_pred HHH
Q 016681 345 VGI 347 (384)
Q Consensus 345 ~~~ 347 (384)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.97 E-value=1.5 Score=34.92 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=28.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQCGKLEEADKYFKIM 329 (384)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 329 (384)
+.+.|.+.|.+..|..-++.|.+. .+-+. ..+-.+..+|...|-.++|...-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 345555666666666666666554 11111 23334445555666665555554433
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.92 E-value=1.5 Score=34.84 Aligned_cols=81 Identities=7% Similarity=0.129 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
...|+.-+. -.+.|++++|.+.|+.+....+ +-...+.-.++.++-+.++++.|+..+++..+.-+......|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444333 3567888888888888876531 2234455566677778888888888888887765443344555555
Q ss_pred HHHH
Q 016681 136 YAKV 139 (384)
Q Consensus 136 ~~~~ 139 (384)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5554
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.90 E-value=0.95 Score=32.45 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRY--PNEATIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
.....+.|++++|.+.|+.+..+-+. -....-..++.++.+.+++++|...+++.++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444666666666666666654211 123344555666666666666666666666554
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=1.6 Score=34.45 Aligned_cols=205 Identities=16% Similarity=0.082 Sum_probs=95.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.|.....+|....++++|...+.+..+.. +.+...|. ....++.|.-+.+++....- -...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHH
Confidence 44455556666677777766666554221 22222111 12233444444444443211 1234455555666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCch
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---G--LKPYDETFNLLIEGCAKAKRI 214 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~ 214 (384)
..|..+.|-..+++.-+. ....++++|+++|++...- + .+--...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 667666666666554332 1223444555555443211 1 000112233344445555555
Q ss_pred HHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 016681 215 EESLSYCEQMMSR----KLLPS-CSAFNEMIRRLCECGNAKQANGMLTLALDKG---FSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 215 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
++|-..+.+-... .-.++ ...|...|-.+.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5554433322111 11111 2234445555566667777777776643321 122455666667666 3566666
Q ss_pred HHHHH
Q 016681 287 VLKLY 291 (384)
Q Consensus 287 a~~~~ 291 (384)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65554
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.58 E-value=1.4 Score=32.74 Aligned_cols=139 Identities=9% Similarity=0.075 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH-HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH-HH--H
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV-IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI-AY--S 132 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~ 132 (384)
+...|..-+. +++.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.....|... -. .
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445554444 35566677777777777766532211 122223344556777777777777776554444322 11 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKP 196 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 196 (384)
.-...+...|.++......+-+-..+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1122345667777777666665554444445555666666677777777777777766543333
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.58 E-value=0.72 Score=34.92 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN--EATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455555555555555555555444432222 223444444444455555544444443
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.49 E-value=2.4 Score=35.21 Aligned_cols=129 Identities=10% Similarity=0.192 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHHcCC---CCChHHHHHHHHHHHhcCC-
Q 016681 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK--M----RNLESALVVYEEMLKRGF---SANSFVYTTFIGAYCEYGK- 178 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 178 (384)
+++...+++.|.+.|+.-+..+|-+..-.... . .....|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455566666776666555554442222222 1 123456667777766521 1233334444332 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCc--hHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 179 ---IEEANCLMQEMENAGLKPYD--ETFNLLIEGCAKAKR--IEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 179 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
.+.++.+|+.+.+.|...+. ...+.++..+..... ..++..+++.+.+.++++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 24455666666665544332 122222222211111 23555666666666666555554443
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.44 E-value=0.1 Score=27.23 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 340 IYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677788888888888888888754
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.40 E-value=2 Score=33.87 Aligned_cols=222 Identities=22% Similarity=0.135 Sum_probs=105.5
Q ss_pred cchHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHH
Q 016681 107 ERIEEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-GFSANSFVYTTFIGAYCEYGKIEEANC 184 (384)
Q Consensus 107 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 184 (384)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455555555554443221 2345555555666666666666666665542 122344455555555666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHH-HHHhcCchHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 185 LMQEMENAGLKPYDETFNLLIE-GCAKAKRIEESLSYCEQMMSRKL--LPSCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665543222 111222222 45556666666666666543211 01222222233334445555566655555554
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 262 KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.........+..+...+...++.+.+...+....... |+ ...+..+...+...+..+.+...++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3211123445555555555555555555555555432 21 22223333333344445555555555544
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.31 E-value=0.054 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=19.7
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681 326 FKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
|++.++..+. +...|..+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444554443 5666777777777777776664
No 273
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.24 E-value=1.3 Score=33.62 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=30.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhhcchHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM--VIVNTSLILRIIQEERIEEGMVLLKRML 120 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 120 (384)
.+..+...|++.|+.+.|.+.|.++......+. ...+-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555666666666555554332221 3334444555555555555555554443
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=4.9 Score=37.77 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH----HHHHHHHhCCCCC
Q 016681 308 SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL----HLCEEMVSEGLKP 371 (384)
Q Consensus 308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~p 371 (384)
-++..+.+..+++.+..+.+..-+. ++..|..++..+.+.+..+.-. ++++.......-|
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ip 773 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIP 773 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCC
Confidence 3555566666777776666655443 7788999999999988655544 4444444443334
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.21 E-value=3.6 Score=36.20 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=27.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 239 MIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (384)
+..++-+.|+.++|.+.++++.+..... .......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4444445555555555555554432111 22244445555555555555555555543
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.13 E-value=4.2 Score=36.58 Aligned_cols=184 Identities=11% Similarity=0.018 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681 163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242 (384)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (384)
..+|...+..-...|+.+.+.-+|+...-.- ..=...|-..+.-....|+.+-+..++....+-..+..+.+.-.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4455556666666666666666666654211 000122333333333346666666555554443332222222111222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCChhhHHHHHHHH-----
Q 016681 243 LCECGNAKQANGMLTLALDKGFSPNEI-TYSHLIGGYAKEGEIQEVL---KLYYEMEYKSISPTLPAYTSLISSL----- 313 (384)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~----- 313 (384)
.-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++...... .-+......+.--+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence 234567788888887777653 3322 2222233444566666666 333322221 11222222222222
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681 314 CQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG 352 (384)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 352 (384)
.-.++.+.|..++.++.+. ..++...|..+++.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2256778888888888775 3446666777776655544
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.99 E-value=2.4 Score=33.34 Aligned_cols=226 Identities=19% Similarity=0.134 Sum_probs=98.2
Q ss_pred CChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681 37 DRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDRIHGK-RCSPMVIVNTSLILRIIQEERIEEGMV 114 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 114 (384)
+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332210 2344445555555555566555555554431 113334444444445555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 115 LLKRMLRKNMIHDTIAYSLIVY-AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
.+.........+ ......... .+...|+++.+...+...... .|.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~------------------------------- 162 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPE------------------------------- 162 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------------------------
Confidence 555555433222 111111111 344445555555555444331 110
Q ss_pred CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH
Q 016681 194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSH 273 (384)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 273 (384)
.......+......+...++.+.+...+..............+..+...+...++.+.+...+......... ....+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 241 (291)
T COG0457 163 LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYN 241 (291)
T ss_pred ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhh
Confidence 001112222222223344455555555555444322112344455555555555566666666555543211 1233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 274 LIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
+...+...+..+.+...+......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333455566666666666554
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.88 E-value=2 Score=31.92 Aligned_cols=139 Identities=9% Similarity=0.063 Sum_probs=90.7
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT-IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF-VYTTF 169 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 169 (384)
+...|...+. +.+.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.-...|-.. ....|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445554443 45677889999999999887754211 112223345667899999999999987654444332 11111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC
Q 016681 170 --IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP 231 (384)
Q Consensus 170 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (384)
.-.+...|.++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 23456788899888888877665543444455566667778899999999999887754443
No 279
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.86 E-value=1.7 Score=31.18 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016681 138 KVKMRNLESALVVYEEMLKRGF--SANSFVYTTFIGAYCEYGKIEEANCLMQEMENA 192 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (384)
..+.|++++|.+.|+.+..+-. +-.....-.++.+|.+.+++++|...+++..+.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445555555555555554411 112233334555555555555555555555543
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.71 E-value=0.23 Score=25.90 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 166 YTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.65 E-value=2.2 Score=31.73 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=55.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681 45 IYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM 124 (384)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 124 (384)
....+.+.++.|+...+..+++.+.+.|++.....+ .+.++-+|.......+-.+ .+....+.++=-.|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH--
Confidence 334444455666666666666666666655443332 2233233322222222111 11222223322222221
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 125 IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 125 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
=...+..+++.+...|++-+|.++....... +......++.+..+.+|..--..+++-.
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0013344555566666666666665543222 1222234455555555544444444333
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=1.4 Score=36.01 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----------HcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC---CCCChhh
Q 016681 169 FIGAYCEYGKIEEANCLMQEME----------NAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK---LLPSCSA 235 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 235 (384)
|.++|+....|+.-....-.+- ..|.+.+..+...++..-....+++.+...+-++.... ..|+. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 4455555555654333331221 22344445555555555555566777777766665431 11111 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
-..+++.+. .-++++++.++..=...|+-||..+++.+|+.+.+.+++.+|.++...|....
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 122233222 33556777777766677777777777777777777777777777776665543
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=1.6 Score=35.73 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=77.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh
Q 016681 158 GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG---LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS 234 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (384)
|.+....+...++..-....+++.++..+-++.... ..|+. +-.+.++.+.+ -++++++.++..=++-|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 445566667777777777788999999988886532 22322 22233444433 36789999999889999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
+++.+|+.+.+.+++..|..+...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998887765
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.50 E-value=1.9 Score=37.53 Aligned_cols=123 Identities=16% Similarity=0.079 Sum_probs=75.1
Q ss_pred HhcCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 016681 244 CECGNAKQANGMLTLALD-KGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEA 322 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 322 (384)
...|+...|-+-+..... ..-.|+.. ......+...|+++.+.+.+...... +.....+...+++.....|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345666655544444433 22223333 33333445678888888777766543 334556777788888888888888
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 016681 323 DKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLK 370 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 370 (384)
...-+-|....++ +++............|-++++...|+++....-+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888877776555 4554444444455567777888888877654433
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.46 E-value=0.093 Score=26.99 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=9.9
Q ss_pred CcHHhHHHHHHHHHhhcchHHH
Q 016681 91 PMVIVNTSLILRIIQEERIEEG 112 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a 112 (384)
.+...|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444
No 286
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.21 E-value=3.9 Score=33.30 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHh-CCCCCcHHhHHHHHHHHHh-hc-chHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681 73 QLQTYVDMLDRIHG-KRCSPMVIVNTSLILRIIQ-EE-RIEEGMVLLKRMLR-KNMIHDTIAYSLIVYAKVKMRNLESAL 148 (384)
Q Consensus 73 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~ 148 (384)
.+.+|+.+|+..-. ..+-.|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++....
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555566553221 1234455666666665554 22 12222333333332 234556667777788888888888888
Q ss_pred HHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCChhhHHHHHHHH
Q 016681 149 VVYEEMLKR-GFSANSFVYTTFIGAYCEYGKIEEANCLMQE-----MENAGLKPYDETFNLLIEGC 208 (384)
Q Consensus 149 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 208 (384)
+.++..... +...|...|..+|+.....|+..-...+.++ +.+.++..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 887776554 4555777888888888888887776666654 23445555555444444433
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.20 E-value=1.2 Score=33.96 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=58.7
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCcHHhHHHHHHHHHhhcchH
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR---CSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+..+.. -.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 678888888877665556777777776666 668889999888876542 2668999999999999999998
Q ss_pred HHH
Q 016681 111 EGM 113 (384)
Q Consensus 111 ~a~ 113 (384)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.03 E-value=8.4 Score=36.62 Aligned_cols=199 Identities=15% Similarity=0.093 Sum_probs=106.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCchHHHHHHHHHHHhC----CCCCChhhHHHHH
Q 016681 173 YCEYGKIEEANCLMQEMENAGLKPYD-------ETFNLLIE-GCAKAKRIEESLSYCEQMMSR----KLLPSCSAFNEMI 240 (384)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 240 (384)
.....++.+|..++.+....-..|+. ..++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567899999998887654322222 12333222 223457888988888776654 2333455667777
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHH---HHHHHHH--HHHhcCCH--HHHHHHHHHHHhc---CCC---CChhhHH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEI---TYSHLIG--GYAKEGEI--QEVLKLYYEMEYK---SIS---PTLPAYT 307 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~--~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~~~~ 307 (384)
.+..-.|++++|..+.....+..-.-+.. .|..+.. .+...|.. ++....+...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888899999998887766532222333 3333322 23455632 2333333333221 111 1123344
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHhHHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681 308 SLISSLCQ-CGKLEEADKYFKIMKSHSLVPGVDIYE--SLVGIHLEKGNKAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 308 ~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 371 (384)
.+..++.+ .+...++..-++--......|-..... .|+......|+.++|...++++......+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 44555444 112222222333222233332222222 67778889999999999999987754444
No 289
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=3.4 Score=37.26 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=51.5
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 016681 104 IQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN 183 (384)
Q Consensus 104 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (384)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45566666655544431 444566666666666666666666554432 334555555556655555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681 184 CLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQ 223 (384)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (384)
.+-....+.|. . |....+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 55555554442 1 2222234445666666555543
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.21 E-value=13 Score=36.74 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=19.6
Q ss_pred CCchhhHHHHHHHHhhcC--ChhHHHHHHHHHHh
Q 016681 20 SLSLISFNTLIHVVTKSD--RNDLVWRIYQHMLE 51 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 51 (384)
.|+ .....+|.++.+.+ ..+.+++.......
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 44557777888877 66666666665553
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.94 E-value=1.9 Score=28.71 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
+..+-+..+...+..|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666666666666666543
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.72 E-value=2.5 Score=27.80 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
-++.+-++.+...+..|++....+.+++|-+.+++..|.++|+.+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444455555555556666666666666666666666666666555
No 293
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.64 E-value=3 Score=31.98 Aligned_cols=73 Identities=14% Similarity=0.012 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCchHHHH
Q 016681 145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA---GLKPYDETFNLLIEGCAKAKRIEESL 218 (384)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (384)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.++++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554445555555555444 55777777777666542 22556677777777777777777663
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.63 E-value=7 Score=32.52 Aligned_cols=130 Identities=15% Similarity=0.241 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CchHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCC--
Q 016681 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAK--A----KRIEESLSYCEQMMSRKLL---PSCSAFNEMIRRLCECGN-- 248 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 248 (384)
++...+++.+.+.|..-+..+|-+....... . ....++..+++.|.+..+. ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666655554443222222 1 1245667777777766432 223334444332 2222
Q ss_pred --hHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 249 --AKQANGMLTLALDKGFSPNE--ITYSHLIGGYAKEGE--IQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 249 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
.+.++.+++.+.+.|+..+. ...+.++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 24456666667666665432 233333332222111 4467788888888888777777665543
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.62 E-value=5.3 Score=31.05 Aligned_cols=64 Identities=9% Similarity=-0.068 Sum_probs=32.3
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
+.++|.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 4556666666666666666666666666554332222222222 222345566665555554443
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.54 E-value=4.3 Score=29.87 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=20.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681 70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
+.++.+++..+++.+.-.. |.....-..-...+...|++.+|..+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3344555555554444332 11122222222234445555555555555443
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.40 E-value=3 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 41 LVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
+..+-++.+......|++.+..+.+.+|.+.+++..|.++|+.++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555566667777777777777777777777777666543
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.35 E-value=4.5 Score=29.76 Aligned_cols=51 Identities=8% Similarity=-0.051 Sum_probs=22.2
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHh
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPNEATI-RTLISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
.+.++.+++..++.-+.-- .|..... ..-...+...|+|.+|..+|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555555554432 2222111 1112223445555555555555543
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.31 E-value=5.7 Score=30.87 Aligned_cols=178 Identities=12% Similarity=0.068 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681 37 DRNDLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVL 115 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 115 (384)
|-+.-|+-=|.+... +.|+ +.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-| ++--.|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 333444444444433 4565 6788888888899999999999999999876333333333333 33347889999888
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 116 LKRMLRKNMI-HDTIAYSLIVYAKVKMRNLESALVVY-EEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
+...-+.+.. |-...|-.+. -..-++.+|..-+ ++..+. |..-|...|-.|. .|++. ...+++.+....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc
Confidence 8777766532 2122222222 1233555555433 333333 4444444333222 12211 112222222211
Q ss_pred CCCC-------hhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 194 LKPY-------DETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 194 ~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
..+ ..||--+...+...|+.++|..+|+-.+..
T Consensus 227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 244555566666677777777777766554
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.24 E-value=17 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=18.0
Q ss_pred CCcHHhHHHHHHHHHhhc--chHHHHHHHHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEE--RIEEGMVLLKRMLR 121 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 121 (384)
.|+ .....++.+|.+.+ .++.|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 344 34445666666666 56666666666654
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.21 E-value=0.67 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 339 DIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.+|..+..++...|++++|...+++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677778888888888888888888775
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.19 E-value=0.59 Score=25.01 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 339 DIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677778888888888888888877654
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.06 E-value=25 Score=37.79 Aligned_cols=320 Identities=11% Similarity=0.058 Sum_probs=148.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHM----LENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
++..+-.+++.+..|...++.- .+.. -....+..+...|+.-++++...-+...-.. .|+ .+ .-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 3444555667777777777663 1110 1223344444477777777776665553111 122 12 223344
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhcCCHHHH
Q 016681 104 IQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT-FIGAYCEYGKIEEA 182 (384)
Q Consensus 104 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 182 (384)
...|++..|...|+.+.+.+.. ...+++-++......+.++.+.-..+-.... ..+....++. =+.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 5677777888888887776532 3556666666666666666666554444333 1222222222 23344566666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHH--HHHHHhcC--chHHHHHHHHHHHhCCC--------C-CChhhHHHHHHHHHhcCCh
Q 016681 183 NCLMQEMENAGLKPYDETFNLL--IEGCAKAK--RIEESLSYCEQMMSRKL--------L-PSCSAFNEMIRRLCECGNA 249 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~~~ 249 (384)
.+... .. +..+|... .....+.. +.-......+.+.+.-+ . .-...|..++....-..-.
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 65554 11 11222222 11111111 11111112222221111 1 0112333333332221111
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCC-----ChhhHHHHHHHHHhcCChHHHH
Q 016681 250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY-YEMEYKSISP-----TLPAYTSLISSLCQCGKLEEAD 323 (384)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~ 323 (384)
.....+...-.......+..-|-.-+..-....+..+-+--+ +.+......| -..+|....+....+|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111000000000111111222221111111111111111 1122211122 2457777888888899999998
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 324 KYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
..+-...+.+ -+..+...+......|+...|+.++++-.+.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8877776654 3456667778889999999999999998754
No 304
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.90 E-value=5.2 Score=30.62 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCc-----HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSPM-----VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
+...|++++|..-|......- ++. ...|..-..++.+.+.++.|++-..+.++.+.. ...+...-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 345566666666666555442 221 223333444556666666666666666655432 2222222334566666
Q ss_pred ChHHHHHHHHHHHHc
Q 016681 143 NLESALVVYEEMLKR 157 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~ 157 (384)
.+++|+.=|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.65 E-value=0.8 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 339 DIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 339 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
..|..+...+...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777788888888888888888765
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.45 E-value=12 Score=33.01 Aligned_cols=122 Identities=9% Similarity=-0.017 Sum_probs=74.9
Q ss_pred HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681 69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL 148 (384)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 148 (384)
...|++..|-+-+....... +.++.........+...|+++.+.+.+...... +.....+...+++...+.|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566666544443333322 333333333344566778888888877765443 2224557777888888888888888
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
..-+.|....+. ++.............|-++++...+.+....+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888888776554 44444444444455667788888877776543
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.20 E-value=13 Score=33.10 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
|.....+++..+..+..+.-.+.+-.+|..-| .+...|..+++.|..+ ..++...+++++.+..+. |+..-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555666666666666666666666666654 3445666677766666 456666677766665543 4434444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHh
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSP-----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQ 315 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 315 (384)
.|-+ ++...+...|..+...-++. -...|..+.... ..+.+....+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66666666666655432210 112344444321 24455555555555433 222223344444455666
Q ss_pred cCChHHHHHHHHHHhhCC
Q 016681 316 CGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~ 333 (384)
..++.+|++++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 667777777777666543
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.91 E-value=0.79 Score=23.23 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444555555555555555555544
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.79 E-value=0.68 Score=25.45 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=20.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 343 SLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 343 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.+..+|...|+.+.|.++++++.+.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677888888888888888887654
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.44 E-value=18 Score=33.50 Aligned_cols=112 Identities=9% Similarity=-0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHH--HH---HhhcCChhHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHccC
Q 016681 5 EVAFDVCRYLEQRGFSLSLISFNTLI--HV---VTKSDRNDLVWRIYQHMLE-------NIRYPNEATIRTLISALCKGG 72 (384)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 72 (384)
..|.+.++...+.| +......+. .. +...++++.|...|+.+.+ .+ +......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 45666666666554 222222222 11 2244566666666666655 22 1223333444444322
Q ss_pred -----ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-hcchHHHHHHHHHHHHcC
Q 016681 73 -----QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ-EERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 73 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 123 (384)
+.+.|..++......+ .|+....-..+..... ..+...|.++|...-+.|
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3444666666555555 3333332222221111 123455666666665555
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.37 E-value=1.3 Score=23.59 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345566666666666666666666554
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.34 E-value=13 Score=31.84 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
...++..+...+.+.|.++.|...+..+...+... .+.....-++.+-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34678888888889999999998888887754222 334555556677778888888888888776
No 313
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.23 E-value=17 Score=33.00 Aligned_cols=326 Identities=14% Similarity=0.115 Sum_probs=171.6
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
.+...|..++.---.....+.+..++..++.. .|... -|......=.+.|..+.+..+|++.... ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 35566766676555555666777777777654 34433 4555556566777788888888877654 35667777666
Q ss_pred HHHHH-hhcchHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH--
Q 016681 100 ILRII-QEERIEEGMVLLKRMLRK-NMI-HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC-- 174 (384)
Q Consensus 100 ~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 174 (384)
...+. ..|+.+.....|+..... |.. .+...|...+..-..++++.....++++.++. ....++....-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 65444 345666666777766553 211 13446666666666777777777777777764 1222222221111
Q ss_pred -hc------CCHHHHHHHHHHHHH--------------------cCCCCCh---hhHHHHHHH-------HHhcCchHHH
Q 016681 175 -EY------GKIEEANCLMQEMEN--------------------AGLKPYD---ETFNLLIEG-------CAKAKRIEES 217 (384)
Q Consensus 175 -~~------~~~~~a~~~~~~~~~--------------------~~~~~~~---~~~~~l~~~-------~~~~~~~~~a 217 (384)
+. ...+++.++-..... .+ .|.. ...+.+-.. +-........
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 11 123333332222211 01 1110 011111111 1111122222
Q ss_pred HHHHHHHHhC---CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681 218 LSYCEQMMSR---KLL----PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL 290 (384)
Q Consensus 218 ~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (384)
...++.-+.. .++ ++..+|...+.--...|+.+.+.-++++..-. +..-...|-..+.-....|+.+-|..+
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 3333333322 112 23456777777778888888888888877643 122334555555555566888888777
Q ss_pred HHHHHhcCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHhhCCCCCCHh-HHHHHHHHHhccCCHHHHH
Q 016681 291 YYEMEYKSISPTLPAYTSLISSL-CQCGKLEEADKYFKIMKSHSLVPGVD-IYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~ 358 (384)
+....+--+ |+......+-..+ -..|++..|..+++.+.+.- |+.. .-..-+....+.|+.+.+.
T Consensus 354 ~~~~~~i~~-k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 354 LARACKIHV-KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhhhhcC-CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 776655432 2222222222222 24678888888888887742 3322 2222334455667666666
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.14 E-value=36 Score=36.73 Aligned_cols=309 Identities=9% Similarity=0.003 Sum_probs=161.6
Q ss_pred cchHHHHHHHHHHHhcCC--CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGF--SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
+.|.+|+-.++.-..... ......|-.+...|+.-++++...-+...-.. +...+ ..|......|++..|..
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEASGNWADAAA 1470 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHhhccHHHHHH
Confidence 456777777777311111 11233344455588888998888777663111 22223 33445677899999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYS-LIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
.|+.+.+.+ ++....++.++......|.++...-..+-..... .+....++ .=+.+.-+.++++....... ..
T Consensus 1471 Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~- 1544 (2382)
T KOG0890|consen 1471 CYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DR- 1544 (2382)
T ss_pred HHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc-
Confidence 999999987 6668888888888888888888877666655442 22333333 23344467778887777665 22
Q ss_pred CCCChHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHcCCCC--------C-hhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 159 FSANSFVYTTF--IGAYCEYG--KIEEANCLMQEMENAGLKP--------Y-DETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 159 ~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+..+|... .....+.. +.-.-.+.++.+.+.-+.| + ...|..++....-. +.....+...
T Consensus 1545 ---n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1545 ---NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENSIEELK 1617 (2382)
T ss_pred ---cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence 33333332 22222222 2111112333332211111 0 12233333322211 1111111111
Q ss_pred hCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHH-HHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 226 SRK----LLPSCSAFNEMIRRLCECGNAKQANGMLTL-ALDK----GFS-PNEITYSHLIGGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 226 ~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (384)
... ...+..-|..-+..-....+..+-.--+++ +... +.. --..+|....+.....|.++.|...+-...
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 111 111111222222211111111111111111 1111 111 134577777787777999999988877776
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 296 YKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
+.+ . +..+-.....+...|+...|+.+++...+.
T Consensus 1698 e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1698 ESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 665 2 345666778888999999999999988753
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.12 E-value=19 Score=33.35 Aligned_cols=278 Identities=12% Similarity=0.014 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHH---HHhhcchHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 016681 74 LQTYVDMLDRIHGKRCSPMVIVNTSLILR---IIQEERIEEGMVLLKRMLR-------KNMIHDTIAYSLIVYAKVKMR- 142 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~- 142 (384)
...+.++++.....| ..........+.. +....+.+.|+..++.... .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 457888888887766 2222222222222 3356788999999988876 44 2334555666666643
Q ss_pred ----ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCchH
Q 016681 143 ----NLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA--KAKRIE 215 (384)
Q Consensus 143 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 215 (384)
+.+.|..++....+.|.+ +....-..+..... ..+...|.++|...-+.|. +....+..++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 667788888888877653 44333333322222 2457889999999888884 32222222222222 223678
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hh----cCCHHHH
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY----AK----EGEIQEV 287 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~----~~~~~~a 287 (384)
.|..++++..+.+.. ...--...+..+.. +.++.+...+..+.+.|.. ...+-...+..- .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHH
Confidence 889999988888733 32222223333333 6666666666666555433 222222211111 11 2245566
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH----hccCCHHHHHH
Q 016681 288 LKLYYEMEYKSISPTLPAYTSLISSLCQC----GKLEEADKYFKIMKSHSLVPGVDIYESLVGIH----LEKGNKAKALH 359 (384)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~ 359 (384)
...+.+....| +......+-..|... .+++.|...+......+ ...+|+ +...+ .-.. ...|.+
T Consensus 459 ~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a~~ 530 (552)
T KOG1550|consen 459 FSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLAKR 530 (552)
T ss_pred HHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHHHH
Confidence 66666665554 334444444444332 24666766666665554 222232 22111 1222 566777
Q ss_pred HHHHHHhCC
Q 016681 360 LCEEMVSEG 368 (384)
Q Consensus 360 ~~~~~~~~~ 368 (384)
++++..+.+
T Consensus 531 ~~~~~~~~~ 539 (552)
T KOG1550|consen 531 YYDQASEED 539 (552)
T ss_pred HHHHHHhcC
Confidence 777666543
No 316
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.03 E-value=11 Score=30.49 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=125.5
Q ss_pred CCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCchHHHHHHHHHHHhC---C--
Q 016681 158 GFSANSFVYTTFIGAY-CEYGKIEEANCLMQEMENAGLKPY---DETFNLLIEGCAKAKRIEESLSYCEQMMSR---K-- 228 (384)
Q Consensus 158 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-- 228 (384)
+-.||+..-|..-.+- .+..++++|+.-|++..+..-... -.....++....+.+++++....+.++..- .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456655444332211 234468899999988876432222 234556778888899999999888887532 1
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----
Q 016681 229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALD----K-GFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI---- 299 (384)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 299 (384)
-..+....|+++...+...+.+-...+++.-.+ . +-+.=-.|-+.+...|...+.+.+..+++.++....-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 112455677777777666666666555554332 1 1111112335667777778888888888887754311
Q ss_pred C-------CChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHhHHHHHHHHH-----hccCCHHHHHHHHHHHHh
Q 016681 300 S-------PTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLVPGVDIYESLVGIH-----LEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 300 ~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 366 (384)
. .-...|..-|+.|....+-..-..++++.... .--|.+.+.. +|+-| .+.|++++|..-|=+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 11345677777888888888888888776542 2234444333 34433 466788888777766654
Q ss_pred C
Q 016681 367 E 367 (384)
Q Consensus 367 ~ 367 (384)
.
T Consensus 260 N 260 (440)
T KOG1464|consen 260 N 260 (440)
T ss_pred c
Confidence 3
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.01 E-value=7 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=26.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
.++++++..+++.+.-.. |.....-..-...+...|++++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 556666666666655432 2222222222334455666666666666665544
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.96 E-value=0.21 Score=36.28 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=74.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE 283 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (384)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666777777777777776655556777777777777777666666666511 11233455666667777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681 284 IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 353 (384)
++++.-++.++....-. +..+...++++.|.+++. +. ++...|..++..+...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~---~~---~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAK---KV---DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGG---GC---SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHH---hc---CcHHHHHHHHHHHHhcCc
Confidence 77777666554322110 011234455555553332 21 356778888887776654
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.95 E-value=4.9 Score=26.53 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI 100 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (384)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++|+.++..- ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 334556666666666666777777777777777777777777777665322 22333444444
No 320
>PRK09687 putative lyase; Provisional
Probab=88.75 E-value=12 Score=30.85 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK-RIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
+..+-...+.++.+.++ +.+...+-.+.+ .++...-...+.++.+.+ +...+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444555555555555 344444444443 233334444444444432 133444444444432 3555556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL 313 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (384)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 666666663 3444443333331 2 223455666666664 5666666666532 4555554444444
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.64 E-value=4.8 Score=31.29 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILR 102 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 102 (384)
+.+..++.+.+.+.+.+++...+.-++.++ -|...-..++..+|-.|++++|..-++-.-... ..+-...|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345567788888899999998888777643 266677888899999999999988877665543 13345566666654
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.27 E-value=15 Score=31.37 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA---NSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-++..-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777888888888888887777643211 334444456666777888888887777665
No 323
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.25 E-value=23 Score=33.38 Aligned_cols=310 Identities=11% Similarity=0.044 Sum_probs=144.6
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM 113 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 113 (384)
.+.|++..+.++...+...-. ..-..|..+.... ....+++....+++-.. .+.....-..-+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655532211 1222233332211 12234444444443221 1222233333444555566666555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH--HHHHHHHHH
Q 016681 114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA--NCLMQEMEN 191 (384)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~ 191 (384)
+.+.. .+.+...-.....+....|+.++|......+-..|.. .+..++.++..+.+.|..... .+-++.+..
T Consensus 120 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~ 193 (644)
T PRK11619 120 AFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMK 193 (644)
T ss_pred HhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 42211 1234444455666777778877777666666555433 456777777777766654332 222222222
Q ss_pred cCC-----------CCChh-hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHhcCChHHHHHHH
Q 016681 192 AGL-----------KPYDE-TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN---EMIRRLCECGNAKQANGML 256 (384)
Q Consensus 192 ~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~ 256 (384)
.|- .++.. ....++..+ .+...+...+.. +.++...-. ..+.-+ ...+.+.|...+
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~ 264 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASV-ARQDAENARLMI 264 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHHHHH
Confidence 221 11100 111111111 111111111111 112221111 112222 345567788888
Q ss_pred HHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 257 TLALDKG-FSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 257 ~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
....... ..+. ...+..+....+..+...++...++...... .+......-+..-.+.++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 7764432 2211 1233344333333332556666665543332 234444555555557888888888888875532
Q ss_pred CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 334 LVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 334 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
.-...-.--+.+++...|+.++|...|+++.
T Consensus 343 -~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 343 -KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred -ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2233334445677677888888888888874
No 324
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.21 E-value=22 Score=33.04 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccccccc
Q 016681 350 EKGNKAKALHLCEEMVSEGLKPSTSYLCSAS 380 (384)
Q Consensus 350 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 380 (384)
+.|++.+|.+.+-.+.+.++-|.......+.
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 4577778887777777777777665544443
No 325
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.11 E-value=15 Score=31.10 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=55.5
Q ss_pred CCChhhHHHHHHHHHhcCc------------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 195 KPYDETFNLLIEGCAKAKR------------IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
+-|..+|-.++..--..-. .+.-+.++++..+.++ -+...+..++..+.+..+.+...+.++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456677776654322211 2344566666666644 35556666666666666677767777777665
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 016681 263 GFSPNEITYSHLIGGYAK---EGEIQEVLKLYYEM 294 (384)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 294 (384)
.+. +...|...+..... .-.++....+|.+.
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 332 56666666655443 23455666555544
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.98 E-value=1.8 Score=21.69 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=14.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHh
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLE 51 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 51 (384)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.97 E-value=6.4 Score=30.18 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 016681 138 KVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPY-DETFNLLIEGCAKAK 212 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 212 (384)
+.+.|++++|..-|...+..-.... ...|..-..++.+.+.++.|++--.+..+.+ |+ ......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhh
Confidence 4556666666666666665421111 2233333445556666666666555555543 21 112222234455556
Q ss_pred chHHHHHHHHHHHhCC
Q 016681 213 RIEESLSYCEQMMSRK 228 (384)
Q Consensus 213 ~~~~a~~~~~~~~~~~ 228 (384)
.++.|+.-|+.+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 6666666666666554
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.71 E-value=0.34 Score=35.20 Aligned_cols=83 Identities=10% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER 108 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 108 (384)
+++.+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++... ..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 456666677777777777777766555567777777777777766666666655111 1222334445555555
Q ss_pred hHHHHHHHHH
Q 016681 109 IEEGMVLLKR 118 (384)
Q Consensus 109 ~~~a~~~~~~ 118 (384)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.62 E-value=1.8 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 340 IYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777664
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.78 E-value=8.6 Score=29.99 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
..+..+.+.+.+.+++...++-.+... .|...-..++..++-.|+|++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334445555555555555544444321 13444444555555555555555544443
No 331
>PRK09687 putative lyase; Provisional
Probab=86.72 E-value=17 Score=30.11 Aligned_cols=234 Identities=11% Similarity=0.007 Sum_probs=127.6
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChHHH
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL----ESALVVYEEMLKRGFSANSFVY 166 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 166 (384)
+|.......+..+...|. +.+...+..+... +|...-...+.++.+.|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344444444445544443 2333333333332 2444444455555555542 3455555544332 2344455
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 167 TTFIGAYCEYGKI-----EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 167 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. ++..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4555555444321 223333333322 3355566667777777776 4556666665553 35556666666
Q ss_pred HHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 242 RLCECG-NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 242 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
++.+.+ +...+...+..+.. .++..+-...+.++.+.++. .+...+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 24456666666664 35777777888888888874 5555555555543 2 234677888888885
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681 321 EADKYFKIMKSHSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (384)
+|...+..+.+.. ||..+-...+.++.
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 6888888877643 36666555555553
No 332
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.64 E-value=31 Score=33.13 Aligned_cols=223 Identities=14% Similarity=0.047 Sum_probs=118.8
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCH----H---HHHHHHH-HHHhcCChHHHHHHHHHHHHc----CCCCChHHHHHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDT----I---AYSLIVY-AKVKMRNLESALVVYEEMLKR----GFSANSFVYTTFI 170 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 170 (384)
.....++++|..++.++...-..|+. . .++.+-. .....|+++.+.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567889999998887654222221 1 2333221 234568889999888777654 2334556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH---HHH--HHHHhcCc--hHHHHHHHHHHHhC---CCC---CChhhHH
Q 016681 171 GAYCEYGKIEEANCLMQEMENAGLKPYDETFN---LLI--EGCAKAKR--IEESLSYCEQMMSR---KLL---PSCSAFN 237 (384)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~--~~~~~~~~--~~~a~~~~~~~~~~---~~~---~~~~~~~ 237 (384)
.+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+ ..+....+...... ... +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999999988776542223333332 222 22344552 22223333322221 111 1223444
Q ss_pred HHHHHHHhcCChHHHHHHH----HHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh----hHH
Q 016681 238 EMIRRLCECGNAKQANGML----TLALDKGFSPNEITY--SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP----AYT 307 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 307 (384)
.+..++.+ .+.+..-. .--......|-.... ..|+......|+.++|...++++......++.. +-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44555544 33332222 222222222222222 356777788999999999999887654333222 222
Q ss_pred HHHH--HHHhcCChHHHHHHHHH
Q 016681 308 SLIS--SLCQCGKLEEADKYFKI 328 (384)
Q Consensus 308 ~l~~--~~~~~g~~~~a~~~~~~ 328 (384)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 22356777777776655
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.54 E-value=7.5 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK 117 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 117 (384)
..++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+.. ..||...|-.|-. .+.|--+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345565555555443211 2222222334556667777776665554 2566666655533 24455555555555
Q ss_pred HHHHcC
Q 016681 118 RMLRKN 123 (384)
Q Consensus 118 ~~~~~~ 123 (384)
+|...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 565555
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.96 E-value=1.2 Score=21.00 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=9.5
Q ss_pred HHHHHHhccCCHHHHHHHH
Q 016681 343 SLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 343 ~l~~~~~~~g~~~~a~~~~ 361 (384)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=32 Score=32.54 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHccCChHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681 68 LCKGGQLQTYVDMLDRIHGKRCSP---MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL 144 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 144 (384)
+.+.+.+++|+.+.+..... .| ....+...+..+...|++++|-...-.|... +..-|...+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 34445555555554443322 22 2334455555555666666665555555443 333444444444444443
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.92 E-value=3.2 Score=34.56 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=25.8
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDRIH 85 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 85 (384)
|.++|.+++|++.|...... .| |.+++..-..+|.+...+..|..-.....
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 45555555555555554442 23 45555555555555555555444444433
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.72 E-value=2.2 Score=23.50 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=8.3
Q ss_pred HHHHhhcchHHHHHHHHHHH
Q 016681 101 LRIIQEERIEEGMVLLKRML 120 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~ 120 (384)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33444444444444444443
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.69 E-value=18 Score=29.49 Aligned_cols=125 Identities=8% Similarity=-0.016 Sum_probs=68.8
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcC-----CC-CC-------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH
Q 016681 27 NTLIHVVTKSDRNDLVWRIYQHMLENI-----RY-PN-------EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV 93 (384)
Q Consensus 27 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 93 (384)
....+.+.-..++..|++..++-.+.= .. |+ ......=|.+++..++|.+++.+.-+.-+..-+-..
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 334444555677888777776655431 11 11 112234467777777777777766554433212223
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcCChHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-----KMRNLESALVVY 151 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~ 151 (384)
.+...-|-.|.+.+++..+.++-....+..-.-+...|..++..|. -.|.+++|+++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4444455567777777777777766665432223334555554443 357777776665
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.54 E-value=1.6 Score=21.69 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 341 YESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 341 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566777788888888888887753
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.07 E-value=4.6 Score=33.69 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
.-|.++|.+++|++.|....... +-|..++..-..+|.+...+..|+.-....+..+-. -...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45678899999999999877664 558888888899999999998888777766654311 1223333333333445556
Q ss_pred HHHHHHHHHHHc
Q 016681 146 SALVVYEEMLKR 157 (384)
Q Consensus 146 ~a~~~~~~~~~~ 157 (384)
+|.+=++..+..
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 666555555543
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.72 E-value=16 Score=28.02 Aligned_cols=89 Identities=16% Similarity=0.092 Sum_probs=49.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYS-----HLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
...+...+++++|+..++..... |....+. .|.+.....|.+++|+..++...+.++. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 34556667777777777666543 1222222 2334455667777777777665554321 122233345566
Q ss_pred hcCChHHHHHHHHHHhhCC
Q 016681 315 QCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~ 333 (384)
..|+-++|+.-|+...+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6777777777777666654
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.14 E-value=31 Score=30.92 Aligned_cols=164 Identities=12% Similarity=0.068 Sum_probs=69.5
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIG 171 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 171 (384)
|-....+++..+..+....-+..+..+|..-|- +...|..++.+|... ..+.-..+++++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 333444455555555555555555555555432 344555555555554 444445555555544332 2222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 016681 172 AYCEYGKIEEANCLMQEMENAGLKP-----YDETFNLLIEGCAKAKRIEESLSYCEQMMSR-KLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 245 (384)
.|- .++.+.+...|.++...=++. -...|..+.... ..+.+..+.+...+... |...-...+..+-.-|..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 222 255555555555444322110 001222222211 22344444444444332 211122233333344555
Q ss_pred cCChHHHHHHHHHHHhc
Q 016681 246 CGNAKQANGMLTLALDK 262 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~ 262 (384)
..++++|.+++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555544
No 343
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.77 E-value=3.8 Score=20.52 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHH
Q 016681 96 NTSLILRIIQEERIEEGMVLLKRML 120 (384)
Q Consensus 96 ~~~l~~~~~~~~~~~~a~~~~~~~~ 120 (384)
|..+...+...|++++|.+.|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=18 Score=32.94 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=96.1
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
...-+.+++.+.++|-.++|+++- +|+.-. .....+.|+++.|.++..+. .+..-|..|.++
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHH
Confidence 345667788888888888877653 233222 23345789999998887653 457789999999
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA 182 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 182 (384)
....+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. | ...-+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHH
Confidence 9999999999999887754 445666777788887777776676666542 2 334456778999999
Q ss_pred HHHHHHH
Q 016681 183 NCLMQEM 189 (384)
Q Consensus 183 ~~~~~~~ 189 (384)
.+++..-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 9887654
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.93 E-value=25 Score=28.93 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCcc
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS-----EGLKPSTS 374 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~ 374 (384)
+++.....|..+|.+.+|.++.++....++ .+...|..++..+...|+--.|.+-++++.+ .|+..|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 445566788899999999999999888653 3677788889999999997777777766542 36665544
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.68 E-value=16 Score=26.57 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=24.0
Q ss_pred cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 141 MRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
.++.+++..+++.+.-..+. +...++... .+...|+|++|..+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 55555555555555433111 122222222 2345566666666666655543
No 347
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.57 E-value=45 Score=31.62 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHhcCCCC---chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSL---SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYV 78 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 78 (384)
+.+++|++.-+..... .| ....+...+..+.-.|++++|-...-.|... +..-|..-+..+...++...
T Consensus 370 k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~-- 441 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTD-- 441 (846)
T ss_pred hHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccch--
Confidence 3456666655544332 23 3345666677777777777777666666543 45555555555555554433
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 79 DMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
++.-++......+...|..++..+..
T Consensus 442 -Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 -IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -hhccCCCCCcccCchHHHHHHHHHHH
Confidence 22222222222345666666666555
No 348
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.27 E-value=35 Score=30.14 Aligned_cols=212 Identities=11% Similarity=0.068 Sum_probs=103.7
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcC
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIA--YSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF--VYTTFIGAYCEYG 177 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 177 (384)
..+..|+.+. ++.+.+.|..|+... ....+..++..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3445666644 455556777765433 2334556667777654 44455666555432 1233456666788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCChHHHHHH
Q 016681 178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA--FNEMIRRLCECGNAKQANGM 255 (384)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~ 255 (384)
+.+.+..+++.-....-..+..-. +.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-+..+
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 887766555431111001111112 2333344556654 4445555565544221 12233444566776544444
Q ss_pred HHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHH
Q 016681 256 LTLALDKGFSPN---EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPA---YTSLISSLCQCGKLEEADKYFKIM 329 (384)
Q Consensus 256 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 329 (384)
.+.|..++ ..-.+.+.. .+..|+.+- .+.+.+.|..++... ...++...+..|+.+ +.+.+
T Consensus 155 ----l~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 155 ----IDHKACLDIEDCCGCTPLII-AMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred ----HhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 44454333 223333333 345566543 344555665555432 124444445566654 45555
Q ss_pred hhCCCCCCHh
Q 016681 330 KSHSLVPGVD 339 (384)
Q Consensus 330 ~~~~~~~~~~ 339 (384)
.+.|..++..
T Consensus 222 l~~gad~n~~ 231 (413)
T PHA02875 222 IKRGADCNIM 231 (413)
T ss_pred HHCCcCcchH
Confidence 6677776643
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.06 E-value=6.9 Score=27.33 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 286 EVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
+..+-++......+.|++.....-+++|.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56666777777788899999999999999999999999999988764
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.04 E-value=27 Score=28.73 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhH
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDI 340 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 340 (384)
+++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...|+--.+.+-++++.+ .|+..+-..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44556678889999999999999998875 66788888999999999998888887777643 466554443
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=58 Score=31.83 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=24.3
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
|......+-+..+++.+....-.++....+.++..|+.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 44556667777777777666555566666666666654
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.65 E-value=51 Score=31.02 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=29.6
Q ss_pred hcCChHHHHHHHHHHhhCCC-CC-----CHhHHHHHHHH--HhccCCHHHHHHHHH
Q 016681 315 QCGKLEEADKYFKIMKSHSL-VP-----GVDIYESLVGI--HLEKGNKAKALHLCE 362 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~l~~~--~~~~g~~~~a~~~~~ 362 (384)
-.+++..|...++.+.+..- .| ....+..++.+ +-..|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 46788888888888876311 11 11223333333 445788999999997
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.63 E-value=16 Score=25.62 Aligned_cols=45 Identities=11% Similarity=0.080 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 78 VDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+-+..+...++.|++.+....++++.+.+++..|..+|+-++.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 334444555555666666666666666666666666666665543
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.51 E-value=30 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=21.6
Q ss_pred HHHHHHhccCCHHHHHHHHHH----HHhCCCCCCccc
Q 016681 343 SLVGIHLEKGNKAKALHLCEE----MVSEGLKPSTSY 375 (384)
Q Consensus 343 ~l~~~~~~~g~~~~a~~~~~~----~~~~~~~p~~~~ 375 (384)
.++..+.+.|.+.+|+.+.+. +.+.+-+|+..+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 467778889999888876544 444455555443
No 355
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.61 E-value=33 Score=28.23 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 265 SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
.++..+...++..++..+++.+..+++...... +...|...|..+|+.....|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345555566666666666666666666655443 334455666666666666666555554444
No 356
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.62 E-value=35 Score=27.93 Aligned_cols=88 Identities=8% Similarity=-0.076 Sum_probs=49.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK--- 210 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 210 (384)
=|.+++..+++.++....-+.-+..-+..+.....-|-.|.+.+.+..+.++-.......-.-+...|..+++.|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35667777777777666555444322223445555566677777777777766666543222222346655555443
Q ss_pred --cCchHHHHHHH
Q 016681 211 --AKRIEESLSYC 221 (384)
Q Consensus 211 --~~~~~~a~~~~ 221 (384)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 46677776655
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.49 E-value=18 Score=24.53 Aligned_cols=79 Identities=15% Similarity=0.037 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK 117 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 117 (384)
..++|..+.+.+...+. -...+-..-+..+.+.|++++| +..-... ..||...|-.|- -.+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45666666666665432 1222333334455666777776 2222222 256666554443 335555566666666
Q ss_pred HHHHcC
Q 016681 118 RMLRKN 123 (384)
Q Consensus 118 ~~~~~~ 123 (384)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 358
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.27 E-value=63 Score=30.64 Aligned_cols=289 Identities=9% Similarity=-0.009 Sum_probs=140.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
...+..+.+.+++......+. . .+.+...-.....+....|+.++|.+....+-..|.. .+..++.++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 344455666777776665321 1 1556666677788888889988888888887766644 456777788777766
Q ss_pred CChHHHH--HHHHHHHHcCCCCChHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 016681 142 RNLESAL--VVYEEMLKRGFSANSFVYTTFIGAYCE------------YGKIEEANCLMQEMENAGLKPYDETFNLLIEG 207 (384)
Q Consensus 142 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (384)
|.+.... +=++.+...| +...-..+...... ..+...+...+. .+.|+...-..++.+
T Consensus 177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHH
Confidence 6544322 1122222221 22222222221100 011111111111 111222111111112
Q ss_pred HH--hcCchHHHHHHHHHHHhCCCC-CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681 208 CA--KAKRIEESLSYCEQMMSRKLL-PS--CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG 282 (384)
Q Consensus 208 ~~--~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (384)
+. ...+.+.|...+......... +. ..+...+.......+...++...+....... .+......-+..-.+.+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 21 233557777777766443321 11 1223333333333322445555555433221 23344444455555777
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC------------CCC--------CCHh---
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH------------SLV--------PGVD--- 339 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~--------~~~~--- 339 (384)
+++.+...+..|....- -...-.--+.+++...|+.++|...|+.+... |.. |...
T Consensus 327 dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~ 405 (644)
T PRK11619 327 DRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSAL 405 (644)
T ss_pred CHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhh
Confidence 77777777777644321 12222333556666678888887777765221 111 0000
Q ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 340 ---IYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 340 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.-..-+..+...|+...|...+..+.+.
T Consensus 406 ~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 406 TQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0112234456678888888877777654
No 359
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.16 E-value=41 Score=28.51 Aligned_cols=98 Identities=8% Similarity=-0.035 Sum_probs=55.4
Q ss_pred CCchhhHHHHHHHHhhcCC------------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 20 SLSLISFNTLIHVVTKSDR------------NDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
|-|+.+|-.++..--..-. .+.-+.++++.++.+. .+...+..++..+.+..+.+...+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5578888777755332211 2344556666666533 35556666666666666667777777777665
Q ss_pred CCCCcHHhHHHHHHHHHh---hcchHHHHHHHHHH
Q 016681 88 RCSPMVIVNTSLILRIIQ---EERIEEGMVLLKRM 119 (384)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 119 (384)
. +-+...|...+..... .-.++....+|.+.
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 4 4456666666654433 12344444444443
No 360
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=77.58 E-value=19 Score=26.24 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=19.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246 (384)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (384)
.++..+.+.+++-.|..+++.+.+.++..+..|...-+..+...
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 34444444444455555555555544444433333333333333
No 361
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.52 E-value=30 Score=26.58 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhH--HHHHHHHHhhcchHHHHHHHHHHHHcCCCC--CHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVN--TSLILRIIQEERIEEGMVLLKRMLRKNMIH--DTIAYSL 133 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 133 (384)
...|..++.... .+.+ +.....+++...+....-..+ -.+...+...+++++|..-++........- ...+--.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344555555443 3333 444555555554311111122 233456778899999999888776542111 1112233
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
|.+.....|.+++|+..++.....+. .......-.+++...|+-++|..-|......+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 45667788999999999888776543 23334445678889999999999999888875
No 362
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=77.10 E-value=18 Score=26.34 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 255 MLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
+.+.+.+.|.+++.. -..++..+.+.++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445555554432 33455555555555667777777666554444333333344444444
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.92 E-value=52 Score=29.03 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=104.6
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHh--HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcC
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIV--NTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI--AYSLIVYAKVKMR 142 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~ 142 (384)
..+..|+.+.+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 345667776655444 4565555432 234445556677764 455556667655432 1223455667788
Q ss_pred ChHHHHHHHHHHHHcCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCchHHH
Q 016681 143 NLESALVVYEEMLKRGFSANSF---VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET--FNLLIEGCAKAKRIEES 217 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 217 (384)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8877655553 33221111 1123344455667664 4444555665554321 12334445566776554
Q ss_pred HHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHH
Q 016681 218 LSYCEQMMSRKLLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEIT---YSHLIGGYAKEGEIQEVLKLY 291 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~ 291 (384)
..++ +.|..++ ....+.+. ..+..|+.+ +.+.+.+.|..++... ....+...+..|+.+ +.
T Consensus 152 ~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 152 ELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred HHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 4444 4443332 22333333 334556654 4455566676665432 123444345566654 44
Q ss_pred HHHHhcCCCCCh
Q 016681 292 YEMEYKSISPTL 303 (384)
Q Consensus 292 ~~~~~~~~~~~~ 303 (384)
+-+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 455567766653
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.90 E-value=14 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=23.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 300 SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 300 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
.|++.+|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777766653
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=78 Score=31.00 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=22.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 016681 137 AKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE 175 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (384)
.+......+-+..+++.+....-.++....+.++..|.+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 345556666666666666555444455555556555543
No 366
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.55 E-value=10 Score=35.09 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=15.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 97 TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML 155 (384)
Q Consensus 97 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 155 (384)
.-++..|.+.|-.+.|.++++.+-.+-. ...-|...+..+.+.|+...+..+.+.+.
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444444444444444332211 11223334444445555444444444333
No 367
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.23 E-value=18 Score=23.43 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHH
Q 016681 42 VWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEG 112 (384)
Q Consensus 42 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 112 (384)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 44566666666643 33333333332234567777777777776 43 34556666666666654444
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.21 E-value=27 Score=25.37 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=44.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCC-----CCcHHhHHHHHHHHHhhcc-hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRC-----SPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
+.++.-....+++.-.+.+++.+..... ..+...|+.++.+..+... --.+..+|.-+.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444455554444444422110 2345566666666655554 334556666666666666777777777
Q ss_pred HHHHhc
Q 016681 136 YAKVKM 141 (384)
Q Consensus 136 ~~~~~~ 141 (384)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 766654
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.97 E-value=9.1 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=21.9
Q ss_pred hcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHH
Q 016681 315 QCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHL 360 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 360 (384)
...+.++|+..|+...+.-..+. -.++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554322211 12344455555555555555443
No 370
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.27 E-value=34 Score=26.01 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhCCCCCc--HHhH-----HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 016681 74 LQTYVDMLDRIHGKRCSPM--VIVN-----TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN 143 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 143 (384)
++.|+.+|+.+.+.-..|. .... ...+-.|.+.|.+++|.+++++.... |+......-+....+.++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 5678888888877653331 1122 23345688999999999999998874 344444444444444443
No 371
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.70 E-value=35 Score=25.89 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=6.1
Q ss_pred CCChHHHHHHHHHH
Q 016681 160 SANSFVYTTFIGAY 173 (384)
Q Consensus 160 ~~~~~~~~~l~~~~ 173 (384)
.|+..+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555554443
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.67 E-value=7.2 Score=18.36 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=6.6
Q ss_pred HHhccCCHHHHHHHHHH
Q 016681 347 IHLEKGNKAKALHLCEE 363 (384)
Q Consensus 347 ~~~~~g~~~~a~~~~~~ 363 (384)
.+...|++++|...+++
T Consensus 10 ~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 10 AYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 33333333333333333
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.44 E-value=23 Score=32.23 Aligned_cols=114 Identities=9% Similarity=-0.001 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCCc--hhhHHHHHHHHhh-cCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHH
Q 016681 8 FDVCRYLEQRGFSLS--LISFNTLIHVVTK-SDRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDR 83 (384)
Q Consensus 8 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 83 (384)
.+....|...|.... ...++.+..+|.+ .|+..+|...+....-....- ......++...+-+.|...+|.-++..
T Consensus 195 ~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhA 274 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHA 274 (886)
T ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeeh
Confidence 445555555554333 3334556666655 578888877776654421111 122344555666677766666666554
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 84 IHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
..... +.-..-+..+..+++..+++.....-|+...+.
T Consensus 275 A~~dA-~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 275 ALDDA-DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred hccCC-ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 44321 000111333444555555555555555544443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.43 E-value=26 Score=31.92 Aligned_cols=152 Identities=12% Similarity=0.039 Sum_probs=95.5
Q ss_pred CCchhhHHHHHHHHhhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHH
Q 016681 20 SLSLISFNTLIHVVTKSD--RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNT 97 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (384)
.|+..+..+++.-+...- ..+-+-.++-.|.. ...|--.+.|...-.+.-.|+...|...+...........-....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 356666666555443332 22344445544433 233333333433333455688888888887766543222333445
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC 174 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (384)
.|...+.+.|-...|-.++.+...-. ...+.++..+.+++....+++.|++.|.+..+.... +...-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 56667777787888888888776654 235667788888999999999999999998887433 5666666666555
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.02 E-value=21 Score=23.14 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=5.6
Q ss_pred CChHHHHHHHHHHh
Q 016681 317 GKLEEADKYFKIMK 330 (384)
Q Consensus 317 g~~~~a~~~~~~~~ 330 (384)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.84 E-value=14 Score=20.80 Aligned_cols=31 Identities=10% Similarity=0.234 Sum_probs=16.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554443
No 377
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.26 E-value=25 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.|++.++..++..+...|+.++|.+...++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777777654
No 378
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.91 E-value=4.8 Score=33.00 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=19.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 016681 341 YESLVGIHLEKGNKAKALHLCEEMVSEGLKPSTSY 375 (384)
Q Consensus 341 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 375 (384)
|+..|....+.||+++|+.++++..+.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 44555556666666666666666665555443333
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.44 E-value=25 Score=23.22 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=8.4
Q ss_pred HhccCCHHHHHHHHHHHH
Q 016681 348 HLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 348 ~~~~g~~~~a~~~~~~~~ 365 (384)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344445555544444443
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.37 E-value=14 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIH 85 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~ 85 (384)
-.+|.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555443
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.56 E-value=42 Score=25.54 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=27.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
.+-.|.+.|.+++|.+++++..+. |+......-+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 445789999999999999998874 34444444444444443
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.42 E-value=14 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHH
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPN--EATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
..++.++|+..|...++.-..|. -.++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666655555422221 1234445555555555555443
No 383
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.37 E-value=42 Score=25.44 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
+++|.+.|++..+. .|+...|+.-+.... +|-++..++.+++
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 45555566655554 577778887776653 3666666666554
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.84 E-value=15 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=10.1
Q ss_pred HHHHHHhhcchHHHHHHHHHHH
Q 016681 99 LILRIIQEERIEEGMVLLKRML 120 (384)
Q Consensus 99 l~~~~~~~~~~~~a~~~~~~~~ 120 (384)
++.++...|++++|.++++++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444455555555555444443
No 385
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.52 E-value=1e+02 Score=29.11 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhc--
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK-LLPSCSAFNEMIRRLCEC-- 246 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-- 246 (384)
...+.-.|.++.|.+.+.. ..+...+..++...+..|.-.+-.+... ..+.... -.|...-+..+|..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455567888888888766 2223455555555554443222222111 2222211 111224567777777763
Q ss_pred -CChHHHHHHHHHHHhc
Q 016681 247 -GNAKQANGMLTLALDK 262 (384)
Q Consensus 247 -~~~~~a~~~~~~~~~~ 262 (384)
.++..|.+.+-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5677777777665543
No 386
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=69.41 E-value=1.1e+02 Score=29.46 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=65.8
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHHHhCCCCCcHHhHH
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISAL---CKGGQLQTYVDMLDRIHGKRCSPMVIVNT 97 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (384)
-+...++.||..+.+.|++++....-..|.+.- +.++..|...+... ...+...++..+|++..... .++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHH
Confidence 366778889999999999999888877887753 33566665554432 34477888888888876553 3344444
Q ss_pred HHHHHHH-------hhcchHHHHHHHHHHHHc
Q 016681 98 SLILRII-------QEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 98 ~l~~~~~-------~~~~~~~a~~~~~~~~~~ 122 (384)
-.+..+. ..++++....+|.+....
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 4443333 346677777888877653
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.44 E-value=70 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 016681 307 TSLISSLCQCGKLEEADKYFKIM 329 (384)
Q Consensus 307 ~~l~~~~~~~g~~~~a~~~~~~~ 329 (384)
.-++..+.+.|.+.+|..+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34667777888888887765543
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.94 E-value=88 Score=27.37 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHhcCchHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 016681 208 CAKAKRIEESLSYCEQMMSRKLLPSCS--AFNEMIRRLC--ECGNAKQANGMLTLALD 261 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 261 (384)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666654 333322 2333333333 23445556666655544
No 389
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=66.74 E-value=53 Score=24.73 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 016681 14 LEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG 72 (384)
Q Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 72 (384)
+.+.|++.+..-. .++..+....+.-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444554333332 344444444555556666666665555445444444444455444
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.47 E-value=7.6 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016681 177 GKIEEANCLMQEMENAGLKPYDETFNLLIE 206 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (384)
|.-.+|..+|..|.+.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3444455555555555555532 444443
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.10 E-value=51 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHH
Q 016681 201 FNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
.+.++......++......+++.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 344444444444444444444444
No 392
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.03 E-value=71 Score=25.63 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHH
Q 016681 73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIA-YSLIVYAKVKMRNLESALVVY 151 (384)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~ 151 (384)
++..|+..|.+....+ |.....|+.-+.++.+..+++.+..-..+.++. .||..- ...+.........+++|...+
T Consensus 25 ~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3444444444444332 222234444444555555555554444443332 222222 222233344445555555555
Q ss_pred HHH
Q 016681 152 EEM 154 (384)
Q Consensus 152 ~~~ 154 (384)
.+.
T Consensus 102 qra 104 (284)
T KOG4642|consen 102 QRA 104 (284)
T ss_pred HHH
Confidence 444
No 393
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=64.66 E-value=60 Score=27.05 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------cCCHHHH
Q 016681 218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK----------EGEIQEV 287 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 287 (384)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+..+..+|+.+... +.-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777778888888888887777777777888888888887753 3335555555442 5777777
Q ss_pred HHHHHH
Q 016681 288 LKLYYE 293 (384)
Q Consensus 288 ~~~~~~ 293 (384)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 777654
No 394
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.51 E-value=19 Score=29.77 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 016681 95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMI 125 (384)
Q Consensus 95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 125 (384)
.|+..|....+.||+++|++++++..+.|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4445566666666666666666666665544
No 395
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.02 E-value=90 Score=29.27 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCChHHHHHH
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRK--NMIHDTIAYSLIVYAKVKMRNLE------SALVVYEEMLKRGFSANSFVYTTF 169 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 169 (384)
+|+.+|..+|++..+.++++.+... |-+.-...+|..++...+.|.++ .|.+.++... +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888888889988888888888764 22223456777777788887653 2333333332 44466777777
Q ss_pred HHHHHh
Q 016681 170 IGAYCE 175 (384)
Q Consensus 170 ~~~~~~ 175 (384)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.02 E-value=24 Score=19.81 Aligned_cols=12 Identities=8% Similarity=0.274 Sum_probs=4.3
Q ss_pred HHHHHHHHHHcC
Q 016681 147 ALVVYEEMLKRG 158 (384)
Q Consensus 147 a~~~~~~~~~~~ 158 (384)
+..+++.|.+.|
T Consensus 21 ~~~~l~~l~~~g 32 (48)
T PF11848_consen 21 VKPLLDRLQQAG 32 (48)
T ss_pred HHHHHHHHHHcC
Confidence 333333333333
No 397
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.77 E-value=45 Score=22.85 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHh
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMS 226 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (384)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366677777777777777777776665
No 398
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.48 E-value=88 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 43 WRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD 307 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD 307 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC
Confidence 356777777777777777666666666666777788888877653
No 399
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.09 E-value=87 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHH
Q 016681 213 RIEESLSYCEQMMSRKLLPSCSAFN 237 (384)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (384)
+...+...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666666666666665554444444
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.49 E-value=55 Score=23.51 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 265 SPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISPT--LPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
.++..+--.+..++.+..+ ..+.+.+++++.+.. .|+ ....--|.-++.+.++++.+.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4455555556666665543 445666777766522 222 223333555677778888888877777764
No 401
>PRK09857 putative transposase; Provisional
Probab=62.36 E-value=73 Score=26.63 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 308 SLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 308 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
.++......++.++..++++.+.+. .........++..-+.+.|..+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334445554455555544443 111223334455555555555566666666666666543
No 402
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.28 E-value=10 Score=26.94 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=17.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681 141 MRNLESALVVYEEMLKRGFSANSFVYTTFIGA 172 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (384)
.|.-..|..+|.+|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555566667777777766665 35555443
No 403
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.22 E-value=1.1e+02 Score=26.65 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHM 49 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 49 (384)
.+.++..+-..+..+|+.+.|.+++++.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444455555566666666665555554
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.78 E-value=1.2e+02 Score=27.27 Aligned_cols=274 Identities=14% Similarity=0.046 Sum_probs=137.6
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHH--HHHHHHHHhcCCCC-----------CHHHHHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLV--WRIYQHMLENIRYP-----------NEATIRTLISAL 68 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~-----------~~~~~~~l~~~~ 68 (384)
+.++.-++++..+...|.......+|.....|.+.|....- ++-++.+...-..| ....+-.....+
T Consensus 31 ~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 31 SEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred cchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 57888999999999998877788899989899898876543 22222222211111 111222222223
Q ss_pred HccCChHHHHHHHHHHHhCCCCC----cH-HhHHHHHHHHHhhcchHHHHHHHH---HHHHcC-----------------
Q 016681 69 CKGGQLQTYVDMLDRIHGKRCSP----MV-IVNTSLILRIIQEERIEEGMVLLK---RMLRKN----------------- 123 (384)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~----------------- 123 (384)
.....+..|+++.......- +| .. .........+......++|+.+++ ++...+
T Consensus 111 yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Confidence 33445555665555443321 11 01 111122334555666677766554 333321
Q ss_pred CCCCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q 016681 124 MIHDTIAYSL------------IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF-IGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 124 ~~~~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 190 (384)
..|....-.. -++++....++..+..-...... +.-|...+-.+ -..+...|++.+|.+++...-
T Consensus 190 ~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 190 LSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 0111111111 11222223333222222211111 11122222211 234566899999998886542
Q ss_pred H---cCCCCC-----hhhHHHHHHHHHhcCchHHHHHHHHHHH-------hCCCCCCh-----------hhHHHHHHHHH
Q 016681 191 N---AGLKPY-----DETFNLLIEGCAKAKRIEESLSYCEQMM-------SRKLLPSC-----------SAFNEMIRRLC 244 (384)
Q Consensus 191 ~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~-----------~~~~~l~~~~~ 244 (384)
- .|...+ -..+|.+...+.+.|.+..+..+|.... ..|..|.. .+|| ..-.|.
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~L 346 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYL 346 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHH
Confidence 2 221111 1123444444455566666555555544 23544321 2233 344577
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681 245 ECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK 280 (384)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (384)
..|++-.|.+.|...... +..++..|-.+..+|.-
T Consensus 347 h~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 347 HSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 889999999999888765 44588899999988863
No 405
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.15 E-value=94 Score=29.15 Aligned_cols=91 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChH------HHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENI--RYPNEATIRTLISALCKGGQLQ------TYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
+++.+|..+|++..+.++++.+.... -+.-...+|..|+...+.|.++ .|.+.+++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888999999999988888887652 2223557788888888888654 2344444433 34466677666
Q ss_pred HHHHHhhcchHHHHHHHHHHHH
Q 016681 100 ILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
+.+-...-.-....-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6655443333333444444443
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.71 E-value=29 Score=30.66 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=21.7
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHh
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEAT-IRTLISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
+.+.+.++.|..+|.+.++. .||... |..-..++.+.+++..|+.=+....+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444455555555554442 233222 22222344444444444444444443
No 407
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.60 E-value=5.3 Score=33.32 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=80.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCChHH
Q 016681 243 LCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL-PAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 321 (384)
....|.++.|++.+...++.. ++....|..-.+++.+.+.+..|++=++...+.+ ||. .-|-.--.+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 345688899999998888764 3466777777788888899999988888877654 432 233333344455789999
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
|...|....+.+..+....|.. ...-..+..++-...+++.++.
T Consensus 201 aa~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHHH
Confidence 9999999998877665444432 3344455555555555554443
No 408
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.26 E-value=89 Score=25.13 Aligned_cols=118 Identities=15% Similarity=0.055 Sum_probs=72.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhhcch
Q 016681 32 VVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM-VIVNTSLILRIIQEERI 109 (384)
Q Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 109 (384)
.|....++..|+..|.+.+. +.|+.. -|+.-+-.+.+..+++.+..--.+..+. .|| +-....+..++.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 35556678888887776665 456664 4555666677788888877766666654 444 33444556677788889
Q ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 110 EEGMVLLKRMLR----KNMIHDTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 110 ~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
++|+..+.+... ..+.+-......|..+--+.-...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999988887743 23344444455554443333344444444443
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.62 E-value=51 Score=22.19 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=6.1
Q ss_pred HHhcCChHHHHHHH
Q 016681 138 KVKMRNLESALVVY 151 (384)
Q Consensus 138 ~~~~~~~~~a~~~~ 151 (384)
+...|++++|..+.
T Consensus 49 LmNrG~Yq~Al~l~ 62 (115)
T TIGR02508 49 LMNRGDYQSALQLG 62 (115)
T ss_pred HHccchHHHHHHhc
Confidence 33444444444433
No 410
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.55 E-value=7.6 Score=32.47 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
|.++.|++.|...+..+ ++....|..-.+.+.+.+....|++=++..
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A 174 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA 174 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh
Confidence 44444444444444443 333344444444444444444444444333
No 411
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=58.69 E-value=20 Score=17.23 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=14.2
Q ss_pred CChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 317 GKLEEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 317 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
|+.+.|..+|+++....+ -+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHH
Confidence 345566666666655422 2445554444
No 412
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=58.51 E-value=77 Score=23.86 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=16.2
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
.++.-.|.++++.+.+.++.++..|...-+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334444555555544444444444333344444433
No 413
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.37 E-value=1.4e+02 Score=26.94 Aligned_cols=98 Identities=12% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHhh-CCCCCCHhHH
Q 016681 266 PNEITY-SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ--CGKLEEADKYFKIMKS-HSLVPGVDIY 341 (384)
Q Consensus 266 ~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~~~~~~~~~ 341 (384)
|+..++ +.++..+-+.|-..+|..++..+.... +|+...|..+++.-.. .-+...+..+++.|.. .| .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 344333 456666667788888888888887763 5666777777654321 2237778888888765 56 477888
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 342 ESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 342 ~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
...+.--...|..+.+-.++.+..+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 8887777788888888888777654
No 414
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.32 E-value=1.8e+02 Score=27.63 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh---c
Q 016681 206 EGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNEITYSHLIGGYAK---E 281 (384)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 281 (384)
..+.-.|+++.|.+.+-. ......+...+...+.-+.-..-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344456888888887766 1122223333333333222111111111 2222111 01112457778888875 5
Q ss_pred CCHHHHHHHHHHHHhc
Q 016681 282 GEIQEVLKLYYEMEYK 297 (384)
Q Consensus 282 ~~~~~a~~~~~~~~~~ 297 (384)
.++.+|.+.+--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 6788888888776654
No 415
>PRK10941 hypothetical protein; Provisional
Probab=57.23 E-value=1.1e+02 Score=25.23 Aligned_cols=76 Identities=8% Similarity=-0.069 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHhHHHHHHHH
Q 016681 271 YSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL-VPGVDIYESLVGI 347 (384)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 347 (384)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.-+ .|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3445556677777777777777777653 23334444445556777777777777777765432 3334444444433
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.57 E-value=1.5e+02 Score=26.75 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 016681 237 NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYA--KEGEIQEVLKLYYEMEYK-SISPTLPAYTSLISSL 313 (384)
Q Consensus 237 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 313 (384)
+.+++-+-+.+..++|..++..+... ++|+...|..+++.-. ..-+..-+..+|+.|... | .++..|--.+.--
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 34455555566666666666666554 3455555655554321 122355566666665433 3 4555665555555
Q ss_pred HhcCChHHHHHHHHHHhh
Q 016681 314 CQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 314 ~~~g~~~~a~~~~~~~~~ 331 (384)
...|..+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566666666666555443
No 417
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.54 E-value=37 Score=19.60 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhh
Q 016681 310 ISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.-++.+.|++++|.+..+.+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555666666666655555
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.28 E-value=94 Score=25.18 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=17.5
Q ss_pred HHHHHhhcCChhHHHHHHHHHHh
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLE 51 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~ 51 (384)
+++.+...+++..|++-|+.=..
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 45888889999988887766544
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.87 E-value=1.4e+02 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDR 83 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~ 83 (384)
+.-+.+.|...|+++.|++.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 34444444555555555555544
No 420
>PRK09462 fur ferric uptake regulator; Provisional
Probab=55.36 E-value=80 Score=23.07 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHhcCCCCchhhHHHHHHHHhhc-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 13 YLEQRGFSLSLISFNTLIHVVTKS-DRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455566544433 3344455443 45667777777777766555666555555666665543
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.97 E-value=76 Score=22.44 Aligned_cols=44 Identities=2% Similarity=-0.017 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 76 TYVDMLDRIHGKRCS-PMVIVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 76 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
.+.++|..|...++- .-...|..-...+...|++++|.++|..-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 788888888776643 34667777888888888888888888753
No 422
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.37 E-value=2e+02 Score=27.17 Aligned_cols=184 Identities=9% Similarity=0.032 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHh-cCCCCc--hhhHHHHHHHHh-hcCChhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHccCChH
Q 016681 5 EVAFDVCRYLEQ-RGFSLS--LISFNTLIHVVT-KSDRNDLVWRIYQHMLENIRYPNEA-----TIRTLISALCKGGQLQ 75 (384)
Q Consensus 5 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 75 (384)
..|++.++.+.+ ..++|. +.++-.+...+. ...+++.|...+++.....-+++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777763 333433 334555566655 6678899999888775543333322 2234556666665544
Q ss_pred HHHHHHHHHHhCC----CCCcHHhHHHH-HHHHHhhcchHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCChH
Q 016681 76 TYVDMLDRIHGKR----CSPMVIVNTSL-ILRIIQEERIEEGMVLLKRMLRKN---MIHDTIAYSLIVYAKV--KMRNLE 145 (384)
Q Consensus 76 ~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~ 145 (384)
|...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+.... ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888887765432 11223333333 223333478888888888876532 2334444444555444 345566
Q ss_pred HHHHHHHHHHHcC---------CCCChHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 016681 146 SALVVYEEMLKRG---------FSANSFVYTTFIGAY--CEYGKIEEANCLMQEM 189 (384)
Q Consensus 146 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 189 (384)
++.+..+.+.... ..|-..+|..+++.+ ...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777776663321 123455566665544 4567766666665554
No 423
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.23 E-value=1.1e+02 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC
Q 016681 344 LVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 344 l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
+.....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344455666666666666666654
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.15 E-value=1.1e+02 Score=24.22 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 016681 230 LPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP---NEITY--SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP 304 (384)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 304 (384)
.+...-++.|+--|.-...+.+|-..|..-. |+.| |..++ ..-|......|+.++|++....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3444455555555555555555555554322 2222 33333 234555667777777777776664333333332
Q ss_pred hHHHHHH----HHHhcCChHHHHHHHHHH
Q 016681 305 AYTSLIS----SLCQCGKLEEADKYFKIM 329 (384)
Q Consensus 305 ~~~~l~~----~~~~~g~~~~a~~~~~~~ 329 (384)
.+-.|.. =+.+.|..++|+++.+.=
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222221 134556666666666543
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.00 E-value=89 Score=25.30 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh----CCC-CCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 307 TSLISSLCQCGKLEEADKYFKIMKS----HSL-VPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 307 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
..+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+.=++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455667777888888888877642 121 2334455666677777787777766655543
No 426
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.99 E-value=30 Score=17.50 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHhcCCCCchhhHH
Q 016681 3 LFEVAFDVCRYLEQRGFSLSLISFN 27 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~ 27 (384)
.++.|..+|+..... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 456666666666554 35555554
No 427
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=52.48 E-value=52 Score=22.62 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=28.4
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555556666777777777766555666655556666666543
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.46 E-value=1.7e+02 Score=26.00 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 016681 141 MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK-----IEEANCLMQEMENAGL 194 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 194 (384)
..+.+.|..++..|.+.|..|....-..++.++-..|. ..-|...++....-|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~ 301 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM 301 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC
Confidence 35666677777777766665554444444444433332 2234444455555554
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.05 E-value=1.6e+02 Score=25.73 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=34.2
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHH--hHHHHHHHHHh--hcchHHHHHHHHHHHHc
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVI--VNTSLILRIIQ--EERIEEGMVLLKRMLRK 122 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 122 (384)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888887765 444443 44455555544 34566777777776554
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.04 E-value=91 Score=22.76 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 257 TLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
+.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455667765543 33445555543 467788999999888876666666655667777777554
No 431
>PRK12798 chemotaxis protein; Reviewed
Probab=51.92 E-value=1.7e+02 Score=25.82 Aligned_cols=154 Identities=8% Similarity=-0.037 Sum_probs=68.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchH
Q 016681 141 MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC-EYGKIEEANCLMQEMENAGLKPYD----ETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 215 (384)
.|+.+++.+.+..+.....++...-+-.|+.+-. ...++.+|+++|+...-. .|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4666666666666655545555555555554432 334566666666665432 2321 22333333445556666
Q ss_pred HHHHHHHHHHhCC-CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 216 ESLSYCEQMMSRK-LLPS-CSAFNEMIRRLCECGNAKQANGMLTLALDK-GFSPNEITYSHLIGGYAKEGEIQEVLKLYY 292 (384)
Q Consensus 216 ~a~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (384)
++..+-.....+- ..|- ...+..+..++.+.++-..-.. +..+... ...--...|..+.+.-.-.|+.+-|...-.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5554444433321 1111 1112222233333332222211 2222211 111123455555555555666666655555
Q ss_pred HHHhc
Q 016681 293 EMEYK 297 (384)
Q Consensus 293 ~~~~~ 297 (384)
+....
T Consensus 282 ~A~~L 286 (421)
T PRK12798 282 RALKL 286 (421)
T ss_pred HHHHh
Confidence 55443
No 432
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=51.67 E-value=67 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
...-.+...+...|++++|++.+-.+++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 433
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.25 E-value=1.5e+02 Score=25.10 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=33.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
.+.-+..+.|+..+|.+.|+++.+.-. ..-......++.++....-+.+...++-+..+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455567888888888877655411 1011223446666666655555555555444433
No 434
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=51.18 E-value=17 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHhcC-CCCch
Q 016681 3 LFEVAFDVCRYLEQRG-FSLSL 23 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~-~~~~~ 23 (384)
+++.|+..|..+...| ++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 5677777777776543 44443
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.52 E-value=1.8e+02 Score=25.61 Aligned_cols=176 Identities=11% Similarity=-0.007 Sum_probs=102.9
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCC
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKN--MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR---------GFSA 161 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 161 (384)
...+.-+...|..+|+++.|++.|.+.+..- .+.....|..+|......|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4567788899999999999999999966531 1223455667777778888888877777666543 2444
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCchHHHHH-----HHHHHHhCCCC
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENA------GLKPYDETFNLLIEGCAKAKRIEESLS-----YCEQMMSRKLL 230 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~-----~~~~~~~~~~~ 230 (384)
....+..+.....+ ++..|.+.|-..... =+.|+..+....+.+++.-++-+--.. .|+.+.+.
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 56666666666554 777777666443221 134544555555555554443332222 22333332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCHHHHHHHHH
Q 016681 231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDK-----GFSPNEITYSHLIG 276 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~ 276 (384)
.+..+..+..-| .+++....++++++... -+.|.+.+.-.+|+
T Consensus 305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 305 -EPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -ChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 333444333333 35677777777776543 23455555555444
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.47 E-value=1.3e+02 Score=24.17 Aligned_cols=36 Identities=6% Similarity=-0.023 Sum_probs=14.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 67 ALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
.+-+.|+++++.+.++++...+...+..-.+.+..+
T Consensus 10 laeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva 45 (236)
T PF00244_consen 10 LAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA 45 (236)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 333444444444444444444333343333333333
No 437
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.32 E-value=1.5e+02 Score=24.84 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=34.6
Q ss_pred cCchHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCS----AFNEMIRRLCECGNAKQANGML-TLALDKGFSPNEITYSHLIGGYAKEGEIQ 285 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (384)
...+++.....++-.+..-.|++. .|..++++- .+.+-.++. +...+ ...+|..|+.+++..|+.+
T Consensus 268 e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHH
Confidence 334555555554444443344544 355555443 333222222 22222 3456778888888888876
Q ss_pred HHH
Q 016681 286 EVL 288 (384)
Q Consensus 286 ~a~ 288 (384)
-.+
T Consensus 339 L~L 341 (412)
T KOG2297|consen 339 LEL 341 (412)
T ss_pred HHH
Confidence 543
No 438
>PRK10941 hypothetical protein; Provisional
Probab=49.74 E-value=1.5e+02 Score=24.50 Aligned_cols=78 Identities=12% Similarity=0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHHHHHHHH
Q 016681 96 NTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFVYTTFIGAYC 174 (384)
Q Consensus 96 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 174 (384)
.+.+-.+|.+.++++.|+++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345666778888888888888888876543 55555555666888888888888887776652 3445555555555443
No 439
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.50 E-value=55 Score=22.52 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 273 HLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555566667788888888887766666666666777777775543
No 440
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=49.48 E-value=1.4e+02 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 016681 176 YGKIEEANCLMQEMEN 191 (384)
Q Consensus 176 ~~~~~~a~~~~~~~~~ 191 (384)
.++.+.+..+.+-+.+
T Consensus 205 ~~~~~~~~~iv~WL~~ 220 (246)
T PF07678_consen 205 RGDLEEASPIVRWLIS 220 (246)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 3555555555555544
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.11 E-value=75 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 016681 169 FIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455566777777766666543
No 442
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.55 E-value=54 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 27 NTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 27 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34566666666677777777777776666666655555555665553
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.97 E-value=60 Score=19.49 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=14.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 70 KGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
..|++=+|.++++.+-.....+....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 35555555555555543322233344444443
No 444
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.41 E-value=1.6e+02 Score=24.20 Aligned_cols=173 Identities=10% Similarity=0.041 Sum_probs=88.7
Q ss_pred CCCCchhhHHHHHHH-HhhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhC---CC-
Q 016681 18 GFSLSLISFNTLIHV-VTKSDRNDLVWRIYQHMLENIRYPNE---ATIRTLISALCKGGQLQTYVDMLDRIHGK---RC- 89 (384)
Q Consensus 18 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 89 (384)
+-.||+..=|..-.+ -.+..++++|+.-|+..++....... .....++....+.+++++..+.|.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345565554332221 12344677777777777764322222 34455666677777777777777766421 11
Q ss_pred -CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--
Q 016681 90 -SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK-NMIHDTI----AYSLIVYAKVKMRNLESALVVYEEMLKRGFSA-- 161 (384)
Q Consensus 90 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 161 (384)
.-+....|+++.....+.+.+....+|+.-... .-.-+.. |-..+...|...+++....+++.++.+..-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123445566666555555555555555543221 0000111 22334555666666666666666665541111
Q ss_pred --C-------hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 162 --N-------SFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 162 --~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
| ...|..-|..|....+-.+...++++..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1 2334445555666666566666665544
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.26 E-value=91 Score=21.36 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666666666666666555
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.87 E-value=1.3e+02 Score=23.19 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=36.2
Q ss_pred cCCCCchhhHHHHHHHHhhcCC----hhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 17 RGFSLSLISFNTLIHVVTKSDR----NDLVWRIYQHMLENIRYPNE----ATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
.|..+++..++.++..+.+..- .+.+..+=.+....++.++- .....-+..|-+.|||..--.+|-..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 4666788888888777665543 33344443444444444332 22333344556666666655555443
No 447
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.38 E-value=1.8e+02 Score=24.48 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=37.4
Q ss_pred hcCChHHHHHHHH-HHHhcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681 245 ECGNAKQANGMLT-LALDKGFSPNEI----TYSHLIGGYAKEGEIQ-EVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK 318 (384)
Q Consensus 245 ~~~~~~~a~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 318 (384)
+...+++.....+ .|.+.++ |+.. .|..++++---+.+-+ -|.+.++. ..+|..|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCCh
Confidence 3344555554444 4555444 4543 5777776644332211 13333333 3578889999999998
Q ss_pred hHHH
Q 016681 319 LEEA 322 (384)
Q Consensus 319 ~~~a 322 (384)
.+..
T Consensus 337 sEL~ 340 (412)
T KOG2297|consen 337 SELE 340 (412)
T ss_pred HHHH
Confidence 7754
No 448
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.67 E-value=65 Score=22.41 Aligned_cols=40 Identities=3% Similarity=-0.138 Sum_probs=16.3
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
..+...+..-.|.++++.+.+.+...+..|...-+..+.+
T Consensus 15 ~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 15 ELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 3333333444455555555544444444433333333333
No 449
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=45.56 E-value=69 Score=20.44 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=6.1
Q ss_pred HHHHHHhCCCCCC
Q 016681 360 LCEEMVSEGLKPS 372 (384)
Q Consensus 360 ~~~~~~~~~~~p~ 372 (384)
+++.+.+.|..|+
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 4445555555554
No 450
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.50 E-value=84 Score=20.44 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 016681 44 RIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
++|+-....|+..|+..|..++..+.-+=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777766666666666677766654
No 451
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.32 E-value=1.6e+02 Score=23.50 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=60.6
Q ss_pred CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCC-CCChhhH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 016681 194 LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKL-LPSCSAF--NEMIRRLCECGNAKQANGMLTLALDKGFSPNEIT 270 (384)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 270 (384)
+.+...-++.|+--|.-...+.+|.+.|..-..-.. ..+..++ ..-|+.....|+.+.|.+....+...-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 345555666666666666666666666654332221 2233333 4567778999999999999988765434445433
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHH
Q 016681 271 YSHLIG----GYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 271 ~~~l~~----~~~~~~~~~~a~~~~~~~~ 295 (384)
+-.+.. -..+.|..++|+++.+.=.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 333221 2346777888887776543
No 452
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.97 E-value=98 Score=21.09 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=7.5
Q ss_pred HHHHccCChHHHHHHHHH
Q 016681 66 SALCKGGQLQTYVDMLDR 83 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~ 83 (384)
.-|...++.++|...+.+
T Consensus 10 ~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHH
Confidence 334444444444444444
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.08 E-value=91 Score=20.18 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHhC
Q 016681 214 IEESLSYCEQMMSR 227 (384)
Q Consensus 214 ~~~a~~~~~~~~~~ 227 (384)
.+++.++++.+..+
T Consensus 46 ~~q~~~LLd~L~~R 59 (84)
T cd08326 46 RDQARQLLIDLETR 59 (84)
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.51 E-value=2.1e+02 Score=23.92 Aligned_cols=114 Identities=8% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 016681 99 LILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK 178 (384)
Q Consensus 99 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (384)
++....+.++.....+.+..+. ....-...+..+...|++..|.+++.+..+ -...+..+--.-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681 179 IEEANCLMQEMENAG-----LKPYDETFNLLIEGCAKAKRIEESLSYCEQ 223 (384)
Q Consensus 179 ~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (384)
+++.....+++.+.. ..-|+..|..+..+|.-.|+...+..-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 455
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=41.33 E-value=2.6e+02 Score=24.90 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHccCChHH-----HHHHHHHHHhCCCCCcHHhHHHH---HHHHHhhcc--hHHHHHHHHHH---------
Q 016681 59 ATIRTLISALCKGGQLQT-----YVDMLDRIHGKRCSPMVIVNTSL---ILRIIQEER--IEEGMVLLKRM--------- 119 (384)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~--~~~a~~~~~~~--------- 119 (384)
.-...+|..||+..+.+- -+.+++.+...+ -|....||.. ..-|.-.+- -.....+|+-+
T Consensus 93 ~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~-lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc 171 (669)
T KOG3636|consen 93 SDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLN-LPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELC 171 (669)
T ss_pred HhhhhHhhhhhhccCCcccccccHHHHHHHHHHhc-CCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHh
Confidence 345677888888765432 345556555555 3444444433 222322111 11122233322
Q ss_pred ---HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH--------HHhcCCHHHHHHHHHH
Q 016681 120 ---LRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA--------YCEYGKIEEANCLMQE 188 (384)
Q Consensus 120 ---~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~ 188 (384)
....+.||..+.|.+...++..-..+-...+|+-..+.+-+ -...+-+++-. -.+...-++++++++.
T Consensus 172 ~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP-F~vffLaliiLiNake~ILq~~sdsKEe~ikfLen 250 (669)
T KOG3636|consen 172 NHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP-FLVFFLALIILINAKEEILQVKSDSKEEAIKFLEN 250 (669)
T ss_pred hhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc-eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHc
Confidence 23457889999888888888888888888888888877533 22223222211 1234456788888888
Q ss_pred HHHcCCCCChhhHHHHHHHHH
Q 016681 189 MENAGLKPYDETFNLLIEGCA 209 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~ 209 (384)
|...--..|..-+-.+...|+
T Consensus 251 mp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 251 MPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred CchhcccccchhHHHHHHHHh
Confidence 765432334445555555554
No 456
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.74 E-value=1.2e+02 Score=20.83 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=6.3
Q ss_pred hcCCHHHHHHHHHHHH
Q 016681 175 EYGKIEEANCLMQEME 190 (384)
Q Consensus 175 ~~~~~~~a~~~~~~~~ 190 (384)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3444444444444443
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.72 E-value=2.6e+02 Score=24.83 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=63.1
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF 169 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 169 (384)
..+......++... .|+...++.+++.+...+...+. +...+++...... ...+......+
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~-~d~~~~~~~~~ 233 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAAR-YDKDGDEHYDL 233 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhc-cCCCccHHHHH
Confidence 33444444444332 67888888877776543211122 2222222221111 11122223334
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc-----hHHHHHHHHHHHhCCCC
Q 016681 170 IGAYCE---YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR-----IEESLSYCEQMMSRKLL 230 (384)
Q Consensus 170 ~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 230 (384)
+.++.+ .++.+.|+.++..|.+.|..|....-..++.++-..|. ..-|...++.....|.+
T Consensus 234 isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 234 ISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 444444 47889999999999998877765555555555444442 23344555555555654
No 458
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.21 E-value=3e+02 Score=25.09 Aligned_cols=93 Identities=8% Similarity=0.061 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-------------CCcHHhHHHHHHHHHh
Q 016681 40 DLVWRIYQHMLEN-IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC-------------SPMVIVNTSLILRIIQ 105 (384)
Q Consensus 40 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~ 105 (384)
+...+.++...+. |+..+......++. ...|++..|+.+++++....- ..+...+..++.+...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~ 260 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLID 260 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLI 134 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (384)
.+....|+.+++++.+.|..|.......+
T Consensus 261 ~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 261 PDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred CCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 459
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.71 E-value=4.3e+02 Score=26.68 Aligned_cols=188 Identities=11% Similarity=-0.034 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC--CC--CCh--------hhHHHHHHHHH
Q 016681 177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK--LL--PSC--------SAFNEMIRRLC 244 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~--------~~~~~l~~~~~ 244 (384)
|..---.++|++..+. ++..+.....-..+..|.++-+.+..+.+.+.- .. .+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444445555555542 333444444445567788877766666555321 11 011 11222244455
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChH
Q 016681 245 ECGNAKQANGMLTLALDKGFSPNE--ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT--LPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 320 (384)
...+++++.+.+... +|.. ..+..++.-..-.++.+...++.+.+.+.-.+.. ......-|.+|.-..+++
T Consensus 747 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (932)
T PRK13184 747 NKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLK 821 (932)
T ss_pred ccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHH
Confidence 555555555433222 2222 2233333333344555555555555544422211 123355677888888999
Q ss_pred HHHHHHHHHhhCCC-CCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 321 EADKYFKIMKSHSL-VPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 321 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
+|-+++......-. .-....+......+.-.++.+-|...|....+.-+-|.
T Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (932)
T PRK13184 822 KAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPR 874 (932)
T ss_pred HHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcc
Confidence 99999876644222 11222333333334556777777777777775544454
No 460
>PHA03100 ankyrin repeat protein; Provisional
Probab=38.64 E-value=3e+02 Score=24.89 Aligned_cols=235 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCchhhHHH--HHHH-----HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-ccCChHHHHH
Q 016681 8 FDVCRYLEQRGFSLSLISFNT--LIHV-----VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALC-KGGQLQTYVD 79 (384)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 79 (384)
.++++.+.+.|..|+...... .+.. ....+..+-+.-+++.-..- -.++....+.+..+.. ..|+.+-...
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAY--SLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
+++.-.... ..+..-.+.+..+..... .-.++++.+.+.|..++.... ...+...+..| -.++.+.+.+.
T Consensus 127 Ll~~g~~~~-~~~~~g~t~L~~A~~~~~---~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ 198 (480)
T PHA03100 127 LLDNGANVN-IKNSDGENLLHLYLESNK---IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDN 198 (480)
T ss_pred HHHcCCCCC-ccCCCCCcHHHHHHHcCC---ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHc
Q ss_pred CCCCChHHH--------HHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 158 GFSANSFVY--------TTFIGAYCEYGK--IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 158 ~~~~~~~~~--------~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
|..++.... ...+...+..|+ .+-+..+++.-..-+ .+|..-.+.+..+..... .++++.+.+.
T Consensus 199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ 272 (480)
T PHA03100 199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPLHYAVYNNN-----PEFVKYLLDL 272 (480)
T ss_pred CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCC-----HHHHHHHHHc
Q ss_pred CCCCChhhHH--HHHHHHHhcCChHHHHHHHH
Q 016681 228 KLLPSCSAFN--EMIRRLCECGNAKQANGMLT 257 (384)
Q Consensus 228 ~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 257 (384)
|..++..... ..+......++.+-+..+++
T Consensus 273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 461
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.56 E-value=2.3e+02 Score=24.98 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=25.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKR--GFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
|++...-.||.....+.++.+.+. |..|...+---+.-+|.-.+++.+|.+.|-.+
T Consensus 241 LlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 241 LLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544432 22222111122344555555666666555444
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.40 E-value=93 Score=18.95 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=30.0
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
|....++.++...++..-.+.++..+.+..+.|.- +..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44556666777777777777777777777776643 55555555555443
No 463
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.29 E-value=1.1e+02 Score=19.88 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 150 VYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
+|+-....|+..|+..|..++.....+-.++...++++.|
T Consensus 30 L~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 30 LYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444444444444444444444443333344444444443
No 464
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=38.02 E-value=1.5e+02 Score=24.92 Aligned_cols=55 Identities=18% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHH--HHHHhccCCHHHHHHHHHHHHh
Q 016681 312 SLCQCGKLEEADKYFKIMKSHSLVPGVDIYESL--VGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.+...|.++.|+..++........|....+..| .+.|...|..+-|..+++++.+
T Consensus 222 ~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 222 ALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555543222122222333222 2335555555555555555443
No 465
>PRK09857 putative transposase; Provisional
Probab=38.02 E-value=2.4e+02 Score=23.63 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
.++....+.++.++..++++.+.+. .+........+..-+.+.|.-+++.++..+|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3443334445544455555554443 11122223334444445555555666666666666543
No 466
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.85 E-value=63 Score=16.80 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHH
Q 016681 340 IYESLVGIHLEKGNKAKALHLCE 362 (384)
Q Consensus 340 ~~~~l~~~~~~~g~~~~a~~~~~ 362 (384)
.+-.+.-.+-..|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34556667788899999999854
No 467
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.68 E-value=2.4e+02 Score=23.40 Aligned_cols=150 Identities=12% Similarity=0.022 Sum_probs=69.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH----hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII----QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MR 142 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~ 142 (384)
.+++..+...+......+ .+ .....+...|. ...+..+|.+.|....+.|.. .....+...+.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~-~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG-DA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC-Ch--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCccc
Confidence 345555566655555433 11 22222222222 233456677777766555532 223334434433 23
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 016681 143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG-------KIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----A 211 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 211 (384)
+..+|..++.+..+.|..+.......+...|..-. +...|...+.++...+. + .....+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~-~--~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN-P--DAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC-H--HHHHHHHHHHHcCCCCC
Confidence 66777777777776665432222333333333221 12356666666665551 2 222223333322 2
Q ss_pred CchHHHHHHHHHHHhCCC
Q 016681 212 KRIEESLSYCEQMMSRKL 229 (384)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~ 229 (384)
.+..+|...|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 255666666666666553
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.66 E-value=2e+02 Score=22.38 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
...+.++..+...|+++.|.+.|.-+...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34556666666777777777777766654
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=36.63 E-value=1.3e+02 Score=26.94 Aligned_cols=104 Identities=13% Similarity=0.004 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYD-ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGN 248 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (384)
++.+.+.++++.|..++.++.+.. ||. ..|..-..++.+.+++..|+.=+...++..+. -...|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 344555667777777777776643 433 33333336666777777776666666665422 12223223334444455
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681 249 AKQANGMLTLALDKGFSPNEITYSHLIGGY 278 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (384)
+.+|...|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5555555555443 245554444444433
No 470
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.44 E-value=1.4e+02 Score=20.56 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=11.3
Q ss_pred HHHHhhcchHHHHHHHHHHHHcC
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
+.+.++...++|+++++-|.+.|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444444555555555555544
No 471
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=35.53 E-value=4.8e+02 Score=26.31 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHccCC
Q 016681 56 PNEATIRTLISALCKGGQ 73 (384)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~ 73 (384)
+|+.+-...+..+.+.+.
T Consensus 633 ~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP 650 (897)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 445555455555554443
No 472
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.67 E-value=1.1e+02 Score=24.46 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=35.5
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
..+.++.+.+.++|.+...--. .....|..+....-+.|+++.|.+-|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap-~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAP-EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCc-hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4456667777777777665422 245566666666667777777777777776655
No 473
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.53 E-value=3.8e+02 Score=24.80 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=31.8
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 27 NTLIHVVTKSDRNDLVWRIYQHMLENIRYP-NEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 27 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
..++.-|.+.+++++|..++..|-=..... --...+.+.+.+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346667888888888888877763221100 1123344444445544344444455554443
No 474
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.43 E-value=3.1e+02 Score=23.86 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=35.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 016681 135 VYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYC-EYGKIEEANCLMQEMEN 191 (384)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 191 (384)
+..+.+.|-+..|.++.+-+......-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456677777778777777777655445555555666554 45566666666665443
No 475
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.43 E-value=2.2e+02 Score=22.10 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--------------CChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 273 HLIGGYAKEGEIQEVLKLYYEMEYKSIS--------------PTLPAYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
+++-.|.+..++.+..++++.|.+..+. +--...|.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3455566666777777777776554321 112233444555555666666655555
No 476
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.26 E-value=4.2e+02 Score=25.25 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-------------CCHhHHHHH
Q 016681 278 YAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV-------------PGVDIYESL 344 (384)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~~~~~l 344 (384)
+......+-...+-+.+.+.|+..+......++. ...|+...+..++++....+-. ++......+
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC
Q 016681 345 VGIHLEKGNKAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 345 ~~~~~~~g~~~~a~~~~~~~~~~~~~p 371 (384)
+.++.. |+...++.+++++.+.|..|
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCH
No 477
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.60 E-value=1.2e+02 Score=18.93 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681 75 QTYVDMLDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
+.|..++..+.... +.++..||++...+
T Consensus 14 EmA~~mL~DLr~de-kRsPQLYnAI~k~L 41 (82)
T PF11123_consen 14 EMAQQMLADLRDDE-KRSPQLYNAIGKLL 41 (82)
T ss_pred HHHHHHHHHhcchh-hcChHHHHHHHHHH
Confidence 34444444443332 34445555444433
No 478
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.53 E-value=2.6e+02 Score=22.63 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 120 LRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR------------GFSANSFVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 120 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
...++.-+......++ +...||...|..-++.-... -..|.+.....++..|. .+++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHH
Confidence 3344443433443332 34456666666555443321 12456666666666544 457788888888
Q ss_pred HHHHcCCCCChhhHHHHHHHH
Q 016681 188 EMENAGLKPYDETFNLLIEGC 208 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~ 208 (384)
++-+.|..|. ...+.+.+.+
T Consensus 263 ~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 263 ELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred HHHHcCCCHH-HHHHHHHHHH
Confidence 8877777664 3334444443
No 479
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=33.48 E-value=13 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHhcC-CCCc
Q 016681 3 LFEVAFDVCRYLEQRG-FSLS 22 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~-~~~~ 22 (384)
+++.|...|..+...| +||+
T Consensus 28 d~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CC
T ss_pred CHHHHHHHHHHHHHcCCCChH
Confidence 4667777777776554 4444
No 480
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.48 E-value=3.8e+02 Score=24.48 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=64.6
Q ss_pred HHhcCChHHHHHHHHHHH---hcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCh----
Q 016681 243 LCECGNAKQANGMLTLAL---DKGFSPNE-----ITYSHLIGGYAKEGEIQEVLKLYYEMEY-------KSISPTL---- 303 (384)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~---~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 303 (384)
+.-.|++.+|.+++...- ..|...++ ..||.+.-...+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445688888888775432 12222221 1234444444556666666666665542 3555432
Q ss_pred -------hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhcc
Q 016681 304 -------PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEK 351 (384)
Q Consensus 304 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (384)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2344 233567889999999999888763 345788899998888643
No 481
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.20 E-value=4.6e+02 Score=25.40 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC-------------CCCCHhHHHHHHHHHhcc
Q 016681 285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS-------------LVPGVDIYESLVGIHLEK 351 (384)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~ 351 (384)
+-...+-..+.+.|+..+......++... .|+...+..+++++...| -..+......++.++..
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~- 258 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN- 258 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 016681 352 GNKAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 352 g~~~~a~~~~~~~~~~~~~p 371 (384)
++...++.+++++.+.|+.+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCH
No 482
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.33 E-value=6e+02 Score=26.47 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=15.8
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLK 117 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 117 (384)
++....|..+...+-+.++.++|...-.
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ 997 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQR 997 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcc
Confidence 3444555666666666666666655433
No 483
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.68 E-value=3.4e+02 Score=23.40 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMSR--KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG 277 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (384)
++.-.+...-..--.+++..++..++.. +..--...|-.+++.....|.++.++.+|+.+...|..|-...-..++..
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q ss_pred H
Q 016681 278 Y 278 (384)
Q Consensus 278 ~ 278 (384)
+
T Consensus 185 L 185 (353)
T PF15297_consen 185 L 185 (353)
T ss_pred H
No 484
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=30.66 E-value=5.7e+02 Score=25.73 Aligned_cols=79 Identities=8% Similarity=-0.061 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR-KLLPSCSAFNEMIRRLCECGNAKQANGMLTL 258 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 258 (384)
+.-.+.|.++.+.--..|..++..-...+...|++..+.+++.++.+. +-.++...|..++..+...|-- ....+++.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~ 1291 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKN 1291 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhh
Confidence 334444555444322233445555555555667777777777666553 3344555555555555555533 33334443
Q ss_pred H
Q 016681 259 A 259 (384)
Q Consensus 259 ~ 259 (384)
+
T Consensus 1292 ~ 1292 (1304)
T KOG1114|consen 1292 W 1292 (1304)
T ss_pred h
Confidence 3
No 485
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.56 E-value=1.8e+02 Score=24.56 Aligned_cols=67 Identities=10% Similarity=-0.054 Sum_probs=30.6
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHHHHhCC
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT-LISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
.|+..|...+....+.+.+.+...+|.+.....+ .|+..|.. --.-+...++++.+..+|....+.+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP-~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP-LNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3555555555555555555555555555554322 13333322 1112233445555555555554444
No 486
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.55 E-value=2.6e+02 Score=21.80 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=18.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
..+.++..+...|+++.|.+.|.-+....
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 44556666666666666666666666543
No 487
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.48 E-value=2.7e+02 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 267 NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
|+..|...+....+.+.+.+.-.++.+....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k 136 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTK 136 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444443333444444444444444443
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.47 E-value=2.9e+02 Score=22.26 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=40.5
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHc
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK-MRNLESALVVYEEMLKR 157 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~ 157 (384)
.++...-+.++++++...++++...+...+..-.+.+..+|-. .|....+.+++..+.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 4566777889999999999999998877777777766666532 35555666666665543
No 489
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.42 E-value=1.8e+02 Score=19.79 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 016681 169 FIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~ 189 (384)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555443
No 490
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=30.34 E-value=3.5e+02 Score=23.22 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc------cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCK------GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
+-.+++..++++....+. |.+......|.++.. .-+|.....+|+.+.....+| +.+.|--+ +..+..-.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHH
Confidence 346778888888877765 788877777766532 246777888888877765333 33444333 344444567
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 111 EGMVLLKRMLRKNMIHDTIA-YSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
.++...+.+...+---.-.. +..-...+.+.|+.++|..-|+.....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 77777777766532212222 233455677889999999999888765
No 491
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=30.18 E-value=2.2e+02 Score=20.70 Aligned_cols=68 Identities=12% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCcHHhHHHHHHHHHhhcc---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 90 SPMVIVNTSLILRIIQEER---IEEGMVLLKRMLRKN-MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
.++..+--.+..++.++.+ ..+.+.+++.+.+.. ..-.......|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444444555554433 344555666665421 1112222333444566666666666666666654
No 492
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.94 E-value=1.9e+02 Score=20.01 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 016681 169 FIGAYCEYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (384)
+++.+.++...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455566677777777777777776
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=4.7e+02 Score=24.45 Aligned_cols=133 Identities=9% Similarity=0.014 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH-------HhCCC-------------CCcHHhHHHH---HHHHHhhcchHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRI-------HGKRC-------------SPMVIVNTSL---ILRIIQEERIEEGMV 114 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~-------------~~~~~~~~~l---~~~~~~~~~~~~a~~ 114 (384)
..+...+..++..+|+.+.+.+++++. ..-.+ +-|...|-++ |..+.+.|-+..|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 345555556666777766655554443 22111 1233333332 345567788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhcCC---HHHHHHHHH
Q 016681 115 LLKRMLRKNMIHDTIAYSLIVYAKV-KMRNLESALVVYEEMLKRG---FSANSFVYTTFIGAYCEYGK---IEEANCLMQ 187 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 187 (384)
+.+-+.+....-|+.....+|..|+ +.+++.-.+++++.....+ .-||-.--.++...|..... -+.|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 8888877765556777777776655 5667777777776664432 23443333445555555444 234444444
Q ss_pred HHH
Q 016681 188 EME 190 (384)
Q Consensus 188 ~~~ 190 (384)
+..
T Consensus 444 qAl 446 (665)
T KOG2422|consen 444 QAL 446 (665)
T ss_pred HHH
Confidence 433
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.45 E-value=1.3e+02 Score=18.84 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=13.7
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
.++.+.+.+++++....|..|.......+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~ 43 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILM 43 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455555555555555444443333333
No 495
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=3.6e+02 Score=23.04 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhcCCCC-------------chhhHHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSL-------------SLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-IRYPNEATIRTLISA 67 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 67 (384)
++.+....+++.+++.+..| |...++++..+ ...+.++.-+..++..+. |-.--...+.....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHccCChHHHHHHHHHHHhC----CCCCcHHhHHHHHHHHHhhcc-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHh
Q 016681 68 LCKGGQLQTYVDMLDRIHGK----RCSPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRKNMIHDTIAYSLIVYA--KVK 140 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~ 140 (384)
||+-|+-+.|.+.+++..+. |.+-|+..+..-+..+....+ +.+-++..+.+.+.|-..+..--...-.+ +..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 141 MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
.+++.+|-.+|-+....-......+|..++.--.-.|
T Consensus 194 vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 496
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.32 E-value=3.2e+02 Score=22.41 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCch
Q 016681 139 VKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GLKPYDETFNLLIEGCAKAKRI 214 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~ 214 (384)
++++++++|.+++..-... +.+.|+...|-++..-+.+. +.+++......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 016681 215 E-ESLSYCEQMMSR-----KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVL 288 (384)
Q Consensus 215 ~-~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (384)
+ .-..+.+.+.+. ...-++..+..+...+.+.+++.+|+..|-.-.+. +...+..++......|...+.
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~- 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEA- 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--H-
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcch-
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHhHHHHHHHHHhccCC
Q 016681 289 KLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH---------------SLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~ 353 (384)
.......+-.|.-.++...|...++...+. -.....--|..++-..++.++
T Consensus 141 --------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 141 --------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp --------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred --------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Q ss_pred HHHHHHHHHH
Q 016681 354 KAKALHLCEE 363 (384)
Q Consensus 354 ~~~a~~~~~~ 363 (384)
.+.-..+.++
T Consensus 207 ~~~F~~L~~~ 216 (260)
T PF04190_consen 207 LPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 497
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=29.27 E-value=2.9e+02 Score=21.86 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=14.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
+.....+.|+.++|.+.|..+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334455566666666666666555
No 498
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=3.7e+02 Score=23.09 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=55.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCC---CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRC---SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
|.-=..-|.+..++..|...|.+-++... ..+...|+.-..+-...|++..|+.=....+..... ....|-.-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHH
Confidence 33344556677777778777777655431 224556666666666677777777777666665433 33344444455
Q ss_pred HHhcCChHHHHHHHHHHH
Q 016681 138 KVKMRNLESALVVYEEML 155 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~ 155 (384)
+.....+..|..+.++..
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 566666666666555543
No 499
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=28.62 E-value=3.3e+02 Score=22.25 Aligned_cols=104 Identities=7% Similarity=0.046 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH----HhcCCC
Q 016681 231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDK----GFSPNEITYSHLIGGYAKEGE--IQEVLKLYYEM----EYKSIS 300 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~----~~~~~~ 300 (384)
|-...-..++...-+....++...+++.+... |..++......++.+++..|. +..+..++++. +..+ .
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~-~ 87 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELE-A 87 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--T
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-c
Confidence 44444555555555555555555555554432 223445666666776666553 33333333322 2221 2
Q ss_pred CChhhHHHHHHHHH--hcCChHHHHHHHHHHhhCCCC
Q 016681 301 PTLPAYTSLISSLC--QCGKLEEADKYFKIMKSHSLV 335 (384)
Q Consensus 301 ~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 335 (384)
++...=..++.+.. -..+...+.-++++|...++-
T Consensus 88 ~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii 124 (253)
T PF09090_consen 88 ESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGII 124 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS
T ss_pred CChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCC
Confidence 33333333333322 135566666666666666654
No 500
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.37 E-value=3.6e+02 Score=22.69 Aligned_cols=236 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHH---------HHHcCCCCC--
Q 016681 135 VYAKVKMRNLESALVVYEEMLKR-GFSANSFVYTTFIGAYCEYG-----KIEEANCLMQE---------MENAGLKPY-- 197 (384)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~---------~~~~~~~~~-- 197 (384)
+.++++.|..+ ...+++-+... ...++...|..++..+.... ..+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred hhhHHHHHHHH-HhcCc-----hHHHHHHHHHHHhC-CC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 016681 198 DETFNLLIEGC-AKAKR-----IEESLSYCEQMMSR-KL---LPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN 267 (384)
Q Consensus 198 ~~~~~~l~~~~-~~~~~-----~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 267 (384)
.......++.. ....- .+.|.+.|+..... .. ..++.....+.....+.|+.+....+++..... ++
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~ 200 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TS 200 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---ST
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CC
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHhh---CCCCCCHhHHHH
Q 016681 268 EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL-CQCGKLEEADKYFKIMKS---HSLVPGVDIYES 343 (384)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~ 343 (384)
...-..++.+++...+.+...++++.....+..++......+.... ......+.+.+++..--+ .....+......
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~ 280 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSR 280 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q ss_pred HHHHHhccCCHHHHHHHHHHHH--hCCCCCCcc
Q 016681 344 LVGIHLEKGNKAKALHLCEEMV--SEGLKPSTS 374 (384)
Q Consensus 344 l~~~~~~~g~~~~a~~~~~~~~--~~~~~p~~~ 374 (384)
++..+...-..++-.+-+++.. .....|...
T Consensus 281 ~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~ 313 (324)
T PF11838_consen 281 VIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLR 313 (324)
T ss_dssp HHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHhhCcCCChHHH
Done!