Query 016681
Match_columns 384
No_of_seqs 708 out of 1439
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 17:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.1E-40 270.0 38.7 357 2-366 98-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.3E-35 2.1E-39 265.9 40.0 342 1-349 163-595 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.3E-34 1.1E-38 251.1 25.3 206 6-211 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 7.7E-31 2.6E-35 226.1 45.4 360 2-373 13-372 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-33 4E-38 247.7 24.9 203 78-280 10-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-28 4.4E-33 212.2 43.4 342 1-352 46-387 (388)
7 2gw1_A Mitochondrial precursor 100.0 3.1E-26 1.1E-30 204.8 37.2 358 1-368 19-479 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 1.4E-25 4.8E-30 197.2 38.8 349 6-364 10-406 (450)
9 2y4t_A DNAJ homolog subfamily 100.0 2.8E-24 9.6E-29 188.9 40.4 347 1-356 39-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.1E-23 7E-28 187.6 37.8 359 1-368 38-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 7.3E-24 2.5E-28 189.4 34.3 339 22-368 5-445 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 3.7E-22 1.3E-26 169.8 39.8 319 22-348 2-350 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-21 3.8E-26 166.9 38.5 308 57-373 2-339 (359)
14 3hym_B Cell division cycle pro 99.9 1.1E-21 3.6E-26 165.0 33.6 292 57-355 21-322 (330)
15 3hym_B Cell division cycle pro 99.9 2.4E-21 8.2E-26 162.9 32.1 295 19-320 18-322 (330)
16 3fp2_A TPR repeat-containing p 99.9 2.4E-21 8.3E-26 174.1 33.5 338 22-367 24-457 (537)
17 1fch_A Peroxisomal targeting s 99.9 4.2E-21 1.4E-25 164.0 27.2 290 70-364 37-356 (368)
18 2xm6_A Protein corresponding t 99.9 4E-18 1.4E-22 151.2 46.3 338 2-369 57-434 (490)
19 1fch_A Peroxisomal targeting s 99.9 5E-21 1.7E-25 163.5 24.8 311 4-330 17-357 (368)
20 4eqf_A PEX5-related protein; a 99.9 7.7E-21 2.6E-25 162.2 23.4 266 92-363 64-352 (365)
21 4eqf_A PEX5-related protein; a 99.9 5.2E-21 1.8E-25 163.3 20.2 268 57-328 64-352 (365)
22 3cv0_A Peroxisome targeting si 99.9 1.5E-19 5.1E-24 151.7 26.6 266 94-365 22-313 (327)
23 2xm6_A Protein corresponding t 99.9 1.2E-16 4.1E-21 141.6 46.5 331 8-368 27-397 (490)
24 3cv0_A Peroxisome targeting si 99.9 4.6E-19 1.6E-23 148.7 26.5 280 22-329 20-312 (327)
25 2ooe_A Cleavage stimulation fa 99.9 5.9E-17 2E-21 145.1 41.4 118 1-121 25-158 (530)
26 1b89_A Protein (clathrin heavy 99.9 1.9E-20 6.6E-25 157.1 17.0 283 1-326 16-305 (449)
27 4g1t_A Interferon-induced prot 99.8 1.8E-17 6.3E-22 146.3 33.7 351 20-375 48-468 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 3E-18 1E-22 140.6 26.2 253 31-297 7-264 (291)
29 3mkr_A Coatomer subunit epsilo 99.8 3.4E-18 1.2E-22 140.3 26.4 271 1-290 12-287 (291)
30 2ooe_A Cleavage stimulation fa 99.8 2E-16 6.8E-21 141.7 39.1 349 11-368 2-455 (530)
31 1b89_A Protein (clathrin heavy 99.8 8.7E-19 3E-23 147.1 16.6 284 35-361 15-305 (449)
32 4g1t_A Interferon-induced prot 99.8 2.7E-16 9.1E-21 138.9 33.4 329 1-334 64-461 (472)
33 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-20 1.9E-24 166.6 7.8 111 235-345 129-243 (1134)
34 3spa_A Mtrpol, DNA-directed RN 99.8 3.4E-19 1.2E-23 161.6 11.5 119 92-210 126-248 (1134)
35 3uq3_A Heat shock protein STI1 99.8 1.7E-16 5.8E-21 128.2 25.2 226 93-332 5-236 (258)
36 2pl2_A Hypothetical conserved 99.8 1.5E-16 5E-21 124.9 22.8 200 20-225 2-212 (217)
37 3e4b_A ALGK; tetratricopeptide 99.8 4.6E-16 1.6E-20 135.9 27.9 340 2-370 17-390 (452)
38 3uq3_A Heat shock protein STI1 99.8 2.4E-16 8.2E-21 127.3 23.9 224 23-260 5-234 (258)
39 2pl2_A Hypothetical conserved 99.8 1.4E-16 4.9E-21 125.0 21.8 209 126-364 3-211 (217)
40 3u4t_A TPR repeat-containing p 99.7 2.2E-15 7.6E-20 122.7 25.3 164 166-332 77-250 (272)
41 1xi4_A Clathrin heavy chain; a 99.7 5E-14 1.7E-18 132.4 36.9 307 1-359 1062-1376(1630)
42 2h6f_A Protein farnesyltransfe 99.7 3E-15 1E-19 126.9 26.6 249 93-349 97-364 (382)
43 2h6f_A Protein farnesyltransfe 99.7 4.2E-15 1.4E-19 126.0 27.2 230 23-259 97-344 (382)
44 3u4t_A TPR repeat-containing p 99.7 2.7E-15 9.4E-20 122.2 24.9 234 61-298 6-251 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.5E-16 2.2E-20 126.1 20.7 221 35-261 17-243 (275)
46 2ho1_A Type 4 fimbrial biogene 99.7 9.7E-15 3.3E-19 117.5 26.3 200 59-262 38-238 (252)
47 2ho1_A Type 4 fimbrial biogene 99.7 1.5E-14 5.1E-19 116.4 27.2 202 93-298 37-239 (252)
48 1ouv_A Conserved hypothetical 99.7 6E-14 2.1E-18 114.3 31.0 224 92-333 5-252 (273)
49 1xi4_A Clathrin heavy chain; a 99.7 1.8E-13 6.2E-18 128.7 37.6 315 2-362 1090-1440(1630)
50 1ouv_A Conserved hypothetical 99.7 8.3E-14 2.8E-18 113.5 31.5 224 57-298 5-252 (273)
51 2vq2_A PILW, putative fimbrial 99.7 1.8E-14 6.1E-19 113.7 26.7 202 22-226 7-210 (225)
52 2q7f_A YRRB protein; TPR, prot 99.7 2.8E-15 9.7E-20 119.9 22.0 198 60-262 25-222 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.1E-15 3.7E-20 124.8 19.7 245 2-256 19-269 (275)
54 2q7f_A YRRB protein; TPR, prot 99.7 2.2E-15 7.6E-20 120.5 20.8 211 21-237 21-231 (243)
55 2vq2_A PILW, putative fimbrial 99.7 3.2E-14 1.1E-18 112.2 27.2 200 58-260 8-209 (225)
56 3sf4_A G-protein-signaling mod 99.7 7.4E-15 2.5E-19 126.9 20.9 176 179-354 163-363 (406)
57 3e4b_A ALGK; tetratricopeptide 99.7 1.9E-14 6.6E-19 125.7 22.4 315 29-369 9-353 (452)
58 4a1s_A PINS, partner of inscut 99.7 1.1E-14 3.9E-19 126.1 19.6 117 61-178 51-181 (411)
59 3sf4_A G-protein-signaling mod 99.6 1.4E-14 4.9E-19 125.1 19.9 300 20-320 6-364 (406)
60 4a1s_A PINS, partner of inscut 99.6 1E-14 3.6E-19 126.3 18.6 237 23-260 48-330 (411)
61 3vtx_A MAMA; tetratricopeptide 99.6 8.8E-14 3E-18 106.1 20.9 173 199-377 6-178 (184)
62 2ond_A Cleavage stimulation fa 99.6 6.4E-13 2.2E-17 110.2 27.7 218 5-226 33-269 (308)
63 3ro2_A PINS homolog, G-protein 99.6 2.7E-14 9.3E-19 119.9 19.3 134 234-367 184-332 (338)
64 3ro2_A PINS homolog, G-protein 99.6 2.4E-14 8.2E-19 120.2 18.8 277 24-332 6-332 (338)
65 2ond_A Cleavage stimulation fa 99.6 1.1E-12 3.9E-17 108.7 28.6 217 75-296 33-269 (308)
66 4abn_A Tetratricopeptide repea 99.6 1.2E-13 4E-18 121.5 23.0 215 38-259 83-318 (474)
67 3ulq_A Response regulator aspa 99.6 1.8E-13 6.2E-18 117.3 23.4 129 235-366 226-367 (383)
68 3ulq_A Response regulator aspa 99.6 5E-13 1.7E-17 114.6 24.5 294 33-331 22-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.6 6.6E-13 2.3E-17 101.2 22.7 166 22-191 4-169 (184)
70 4abn_A Tetratricopeptide repea 99.6 1.7E-13 5.6E-18 120.6 21.5 214 109-328 84-317 (474)
71 3nf1_A KLC 1, kinesin light ch 99.5 5.1E-14 1.8E-18 116.9 13.1 243 92-366 26-306 (311)
72 3nf1_A KLC 1, kinesin light ch 99.5 7.6E-14 2.6E-18 115.9 14.1 171 21-191 25-223 (311)
73 4e6h_A MRNA 3'-END-processing 99.5 2.5E-10 8.5E-15 103.4 37.7 357 7-368 51-534 (679)
74 4e6h_A MRNA 3'-END-processing 99.5 1.3E-10 4.3E-15 105.3 35.5 219 147-368 328-571 (679)
75 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.5E-16 104.7 27.7 300 61-368 17-350 (373)
76 3q15_A PSP28, response regulat 99.5 9.4E-12 3.2E-16 106.4 25.3 227 136-366 109-364 (378)
77 3q15_A PSP28, response regulat 99.5 1.2E-11 4.3E-16 105.6 26.0 308 20-331 7-364 (378)
78 1hz4_A MALT regulatory protein 99.5 3.4E-11 1.2E-15 102.7 27.9 301 25-333 16-350 (373)
79 3as5_A MAMA; tetratricopeptide 99.5 8.3E-12 2.8E-16 95.0 19.8 165 199-367 9-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.5 3.9E-12 1.3E-16 116.4 20.7 168 20-191 6-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.5 1.3E-11 4.5E-16 93.8 20.4 160 26-189 11-170 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.5 5.5E-12 1.9E-16 115.4 19.6 165 163-331 9-173 (723)
83 4i17_A Hypothetical protein; T 99.4 4.3E-11 1.5E-15 94.5 21.9 206 21-239 5-220 (228)
84 4i17_A Hypothetical protein; T 99.4 5.3E-11 1.8E-15 94.0 21.5 195 127-333 6-210 (228)
85 3edt_B KLC 2, kinesin light ch 99.4 4.5E-12 1.5E-16 103.5 15.5 225 2-227 15-281 (283)
86 2uy1_A Cleavage stimulation fa 99.4 4.4E-09 1.5E-13 92.4 32.8 345 2-366 28-412 (493)
87 3edt_B KLC 2, kinesin light ch 99.4 1.5E-11 5.1E-16 100.4 15.7 96 130-225 87-196 (283)
88 1qqe_A Vesicular transport pro 99.3 2.8E-10 9.4E-15 93.4 20.1 165 165-331 79-268 (292)
89 3mv2_B Coatomer subunit epsilo 99.3 1.2E-09 4.2E-14 88.1 21.9 246 66-333 21-283 (310)
90 3mv2_B Coatomer subunit epsilo 99.3 2.6E-09 9E-14 86.2 23.5 249 30-304 20-287 (310)
91 3dra_A Protein farnesyltransfe 99.3 2.1E-08 7.1E-13 81.7 28.1 218 38-260 48-285 (306)
92 2fo7_A Synthetic consensus TPR 99.3 6.5E-10 2.2E-14 79.4 17.1 129 25-156 3-131 (136)
93 2fo7_A Synthetic consensus TPR 99.3 6.3E-10 2.2E-14 79.5 16.9 130 235-367 3-132 (136)
94 1qqe_A Vesicular transport pro 99.3 6.1E-10 2.1E-14 91.4 18.4 235 111-366 3-268 (292)
95 3dra_A Protein farnesyltransfe 99.3 3E-08 1E-12 80.8 27.9 219 72-295 47-285 (306)
96 3qky_A Outer membrane assembly 99.3 1.7E-09 5.8E-14 87.2 20.7 188 21-228 13-225 (261)
97 2pzi_A Probable serine/threoni 99.2 1.5E-10 5E-15 106.4 15.4 150 2-156 405-562 (681)
98 3qky_A Outer membrane assembly 99.2 2.4E-09 8.1E-14 86.3 20.8 173 1-193 28-225 (261)
99 3urz_A Uncharacterized protein 99.2 8.2E-10 2.8E-14 85.7 17.4 97 24-122 5-117 (208)
100 2pzi_A Probable serine/threoni 99.2 3.3E-10 1.1E-14 104.1 16.2 171 174-350 402-580 (681)
101 3qou_A Protein YBBN; thioredox 99.2 1.8E-09 6.2E-14 88.3 18.5 165 57-225 116-282 (287)
102 3urz_A Uncharacterized protein 99.2 2.8E-09 9.6E-14 82.6 18.7 75 134-210 60-134 (208)
103 3rjv_A Putative SEL1 repeat pr 99.2 6.1E-09 2.1E-13 81.0 20.1 176 6-193 4-198 (212)
104 2r5s_A Uncharacterized protein 99.2 9.2E-10 3.2E-14 82.9 14.5 163 24-190 7-171 (176)
105 4ga2_A E3 SUMO-protein ligase 99.2 3.2E-10 1.1E-14 82.9 11.5 143 207-353 6-149 (150)
106 2uy1_A Cleavage stimulation fa 99.2 3E-08 1E-12 87.2 26.0 330 4-364 11-380 (493)
107 4ga2_A E3 SUMO-protein ligase 99.2 8.6E-10 2.9E-14 80.6 13.7 140 34-177 8-148 (150)
108 3qou_A Protein YBBN; thioredox 99.2 2.9E-09 9.8E-14 87.1 17.6 168 90-261 114-283 (287)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4.2E-13 80.1 20.4 187 22-230 3-216 (225)
110 2vsy_A XCC0866; transferase, g 99.1 2E-09 6.8E-14 97.2 17.9 154 2-159 3-159 (568)
111 2vsy_A XCC0866; transferase, g 99.1 3E-09 1E-13 96.0 18.9 154 36-193 2-158 (568)
112 2r5s_A Uncharacterized protein 99.1 8.6E-10 2.9E-14 83.1 12.7 158 204-365 12-171 (176)
113 3rjv_A Putative SEL1 repeat pr 99.1 1.2E-08 4.2E-13 79.2 19.3 176 41-228 4-198 (212)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 8.7E-09 3E-13 85.1 19.1 198 2-225 5-222 (307)
115 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.6E-08 9E-13 78.2 20.5 188 162-368 3-214 (225)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 6.1E-09 2.1E-13 86.1 17.5 159 136-295 44-222 (307)
117 3q7a_A Farnesyltransferase alp 99.1 2.8E-07 9.7E-12 75.9 26.2 176 33-213 64-257 (349)
118 3q7a_A Farnesyltransferase alp 99.0 5.4E-07 1.9E-11 74.3 25.8 30 301-330 300-329 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.1E-08 2.1E-12 75.3 17.9 129 25-158 8-151 (213)
120 3u3w_A Transcriptional activat 99.0 4.3E-07 1.5E-11 74.4 23.3 162 100-261 82-265 (293)
121 2c2l_A CHIP, carboxy terminus 98.9 1.1E-08 3.8E-13 83.2 12.4 99 22-122 3-101 (281)
122 2c2l_A CHIP, carboxy terminus 98.9 1.5E-08 5.3E-13 82.4 13.1 195 162-367 3-199 (281)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.1E-07 7.3E-12 72.2 19.2 125 61-191 9-149 (213)
124 3u3w_A Transcriptional activat 98.9 7.1E-07 2.4E-11 73.1 22.8 163 134-296 81-265 (293)
125 4gco_A Protein STI-1; structur 98.9 6.3E-08 2.1E-12 68.2 14.2 97 24-122 14-110 (126)
126 1p5q_A FKBP52, FK506-binding p 98.9 3.8E-09 1.3E-13 88.4 9.1 130 58-190 147-292 (336)
127 1a17_A Serine/threonine protei 98.9 1E-07 3.5E-12 70.6 16.1 96 25-122 15-110 (166)
128 1a17_A Serine/threonine protei 98.9 1.3E-07 4.4E-12 70.1 16.3 126 60-188 15-142 (166)
129 4gco_A Protein STI-1; structur 98.9 1.1E-07 3.9E-12 66.8 14.5 95 61-157 16-110 (126)
130 2qfc_A PLCR protein; TPR, HTH, 98.9 8.7E-07 3E-11 72.6 21.6 167 94-260 76-264 (293)
131 1na0_A Designed protein CTPR3; 98.9 1.5E-07 5.1E-12 65.8 14.8 98 23-122 9-106 (125)
132 2e2e_A Formate-dependent nitri 98.9 8.5E-08 2.9E-12 72.1 14.4 117 72-191 24-143 (177)
133 3gw4_A Uncharacterized protein 98.9 5.9E-08 2E-12 74.7 13.4 155 35-190 4-174 (203)
134 1na0_A Designed protein CTPR3; 98.9 2.5E-07 8.4E-12 64.7 15.5 97 59-157 10-106 (125)
135 2lni_A Stress-induced-phosphop 98.9 1.2E-07 4.1E-12 67.3 14.0 99 22-122 15-113 (133)
136 3gyz_A Chaperone protein IPGC; 98.8 5E-08 1.7E-12 70.9 11.8 96 60-157 38-133 (151)
137 2lni_A Stress-induced-phosphop 98.8 1.9E-07 6.4E-12 66.2 14.7 98 58-157 16-113 (133)
138 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.1E-12 67.0 13.6 118 22-142 11-128 (131)
139 2e2e_A Formate-dependent nitri 98.8 6.4E-08 2.2E-12 72.8 12.7 123 33-158 20-145 (177)
140 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.6E-12 75.2 14.5 187 2-192 20-237 (282)
141 2qfc_A PLCR protein; TPR, HTH, 98.8 4.1E-07 1.4E-11 74.6 18.1 170 57-226 74-265 (293)
142 2vyi_A SGTA protein; chaperone 98.8 2.1E-07 7.1E-12 65.7 14.3 115 60-177 14-128 (131)
143 2vgx_A Chaperone SYCD; alterna 98.8 8.1E-08 2.8E-12 69.8 12.2 108 81-191 10-117 (148)
144 3gw4_A Uncharacterized protein 98.8 1.2E-07 4.1E-12 72.9 13.8 156 69-225 3-174 (203)
145 3gyz_A Chaperone protein IPGC; 98.8 5.8E-08 2E-12 70.5 11.0 100 22-123 35-134 (151)
146 4f3v_A ESX-1 secretion system 98.8 1.6E-07 5.6E-12 74.8 13.7 126 99-227 108-237 (282)
147 1p5q_A FKBP52, FK506-binding p 98.8 2.5E-07 8.6E-12 77.3 15.6 128 235-364 149-291 (336)
148 2vgx_A Chaperone SYCD; alterna 98.8 8.6E-08 2.9E-12 69.6 11.2 99 22-122 20-118 (148)
149 3dss_A Geranylgeranyl transfer 98.8 4E-05 1.4E-09 62.9 27.7 183 110-297 91-304 (331)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 3.1E-08 1.1E-12 76.1 8.3 55 32-87 13-67 (198)
151 2fbn_A 70 kDa peptidylprolyl i 98.7 2.8E-08 9.5E-13 76.3 7.8 125 22-148 37-176 (198)
152 2xcb_A PCRH, regulatory protei 98.7 2.7E-07 9.4E-12 66.4 12.5 97 93-191 18-114 (142)
153 3upv_A Heat shock protein STI1 98.7 5.2E-07 1.8E-11 63.4 13.5 98 23-122 4-101 (126)
154 1elw_A TPR1-domain of HOP; HOP 98.7 1.4E-06 4.7E-11 60.1 14.8 98 23-122 4-101 (118)
155 1elw_A TPR1-domain of HOP; HOP 98.7 1.5E-06 5.3E-11 59.8 14.9 97 59-157 5-101 (118)
156 3upv_A Heat shock protein STI1 98.7 9E-07 3.1E-11 62.1 13.6 96 60-157 6-101 (126)
157 3dss_A Geranylgeranyl transfer 98.7 8.9E-05 3.1E-09 60.9 30.3 196 144-347 90-318 (331)
158 2kck_A TPR repeat; tetratricop 98.6 5.3E-07 1.8E-11 61.6 11.5 100 22-123 5-107 (112)
159 2xcb_A PCRH, regulatory protei 98.6 4E-07 1.4E-11 65.6 11.2 99 22-122 17-115 (142)
160 4gcn_A Protein STI-1; structur 98.6 1.6E-06 5.4E-11 61.0 13.2 55 64-119 14-68 (127)
161 3q49_B STIP1 homology and U bo 98.6 1.5E-06 5.2E-11 61.9 13.2 99 232-332 8-106 (137)
162 3sz7_A HSC70 cochaperone (SGT) 98.6 1.7E-06 5.9E-11 63.9 13.8 100 22-123 10-109 (164)
163 3q49_B STIP1 homology and U bo 98.6 3.7E-06 1.3E-10 59.8 15.2 24 26-49 12-35 (137)
164 2dba_A Smooth muscle cell asso 98.6 3.3E-06 1.1E-10 60.9 14.9 98 22-122 27-128 (148)
165 3sz7_A HSC70 cochaperone (SGT) 98.6 2.4E-06 8.1E-11 63.2 14.1 98 58-157 11-108 (164)
166 2kck_A TPR repeat; tetratricop 98.6 1.9E-06 6.4E-11 58.8 12.2 97 270-367 8-106 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.6 1.4E-06 4.9E-11 61.3 11.9 53 66-119 12-64 (131)
168 4b4t_Q 26S proteasome regulato 98.5 1.1E-05 3.8E-10 69.9 19.6 197 135-331 11-244 (434)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.2E-07 4E-12 82.9 7.0 127 60-189 270-412 (457)
170 1hxi_A PEX5, peroxisome target 98.5 1.7E-06 5.8E-11 60.2 11.7 96 25-122 19-114 (121)
171 2dba_A Smooth muscle cell asso 98.5 6.6E-06 2.3E-10 59.3 15.3 99 57-157 27-128 (148)
172 4gcn_A Protein STI-1; structur 98.5 3.1E-06 1.1E-10 59.5 12.9 97 94-191 9-111 (127)
173 1hxi_A PEX5, peroxisome target 98.5 1.2E-06 4.3E-11 60.9 10.5 93 272-366 21-113 (121)
174 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-06 4.9E-11 61.3 10.8 111 22-136 3-120 (131)
175 4b4t_Q 26S proteasome regulato 98.5 2.5E-05 8.7E-10 67.7 20.1 190 2-191 18-244 (434)
176 3k9i_A BH0479 protein; putativ 98.4 5.3E-07 1.8E-11 62.4 7.1 85 2-87 4-90 (117)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.4E-06 1.5E-10 73.0 14.0 122 235-358 270-405 (457)
178 1wao_1 Serine/threonine protei 98.4 3.5E-07 1.2E-11 80.2 7.0 124 26-152 9-134 (477)
179 1wao_1 Serine/threonine protei 98.4 1.8E-06 6.1E-11 75.8 10.9 114 1-117 19-134 (477)
180 2xev_A YBGF; tetratricopeptide 98.4 1.9E-05 6.4E-10 55.4 14.1 93 28-122 7-105 (129)
181 2xev_A YBGF; tetratricopeptide 98.4 2.6E-05 9E-10 54.6 14.8 91 66-157 10-105 (129)
182 3ro3_A PINS homolog, G-protein 98.4 2.8E-06 9.6E-11 62.3 10.0 132 235-366 11-157 (164)
183 3ro3_A PINS homolog, G-protein 98.4 5E-06 1.7E-10 60.9 11.0 59 131-189 92-155 (164)
184 1dce_A Protein (RAB geranylger 98.3 7.8E-05 2.7E-09 66.7 20.3 173 73-250 44-243 (567)
185 1ihg_A Cyclophilin 40; ppiase 98.3 9.1E-06 3.1E-10 68.7 13.3 137 25-183 225-361 (370)
186 1dce_A Protein (RAB geranylger 98.3 5.5E-05 1.9E-09 67.7 18.9 173 38-215 44-243 (567)
187 3k9i_A BH0479 protein; putativ 98.3 2E-06 6.7E-11 59.5 7.5 86 36-122 3-90 (117)
188 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-05 4.1E-10 68.0 13.5 138 60-219 225-362 (370)
189 3rkv_A Putative peptidylprolyl 98.3 2.5E-05 8.5E-10 57.4 13.3 63 94-157 64-126 (162)
190 3rkv_A Putative peptidylprolyl 98.3 2.2E-05 7.6E-10 57.7 12.4 101 22-123 10-127 (162)
191 2hr2_A Hypothetical protein; a 98.2 3E-05 1E-09 55.8 12.0 97 23-120 11-129 (159)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 5.8E-06 2E-10 69.1 9.3 149 23-192 179-328 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.2 7.3E-06 2.5E-10 68.5 9.6 96 270-367 232-328 (338)
194 2hr2_A Hypothetical protein; a 98.2 3.5E-05 1.2E-09 55.5 11.2 93 273-366 16-130 (159)
195 1klx_A Cysteine rich protein B 98.1 0.00013 4.4E-09 51.9 14.0 110 248-368 10-127 (138)
196 1klx_A Cysteine rich protein B 98.1 0.00019 6.3E-09 51.1 14.6 86 102-193 34-127 (138)
197 2l6j_A TPR repeat-containing p 98.0 6E-05 2.1E-09 51.1 9.7 90 22-113 3-98 (111)
198 2kat_A Uncharacterized protein 98.0 6.6E-05 2.3E-09 51.4 9.8 62 22-84 18-79 (115)
199 2kat_A Uncharacterized protein 98.0 6.3E-05 2.2E-09 51.5 9.7 77 77-155 4-80 (115)
200 3n71_A Histone lysine methyltr 98.0 6.9E-05 2.4E-09 65.5 11.5 97 165-261 353-463 (490)
201 3n71_A Histone lysine methyltr 97.9 5.5E-05 1.9E-09 66.1 10.5 26 94-119 352-377 (490)
202 1na3_A Designed protein CTPR2; 97.9 0.00014 4.8E-09 47.1 10.1 79 23-103 9-87 (91)
203 2l6j_A TPR repeat-containing p 97.9 6E-05 2E-09 51.1 8.6 66 57-123 3-68 (111)
204 1na3_A Designed protein CTPR2; 97.9 0.00017 5.9E-09 46.6 10.1 62 60-122 11-72 (91)
205 1zu2_A Mitochondrial import re 97.8 0.00012 4.1E-09 52.5 8.9 36 37-73 16-51 (158)
206 1zu2_A Mitochondrial import re 97.8 0.00016 5.5E-09 51.9 9.3 58 145-205 63-131 (158)
207 3ma5_A Tetratricopeptide repea 97.7 0.00021 7.2E-09 47.4 8.0 64 267-331 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.6 0.00046 1.6E-08 45.7 8.4 57 61-118 10-66 (100)
209 3ly7_A Transcriptional activat 97.5 0.0056 1.9E-07 50.6 15.6 63 127-191 276-338 (372)
210 3ly7_A Transcriptional activat 97.3 0.0087 3E-07 49.5 14.4 74 265-342 274-347 (372)
211 3bee_A Putative YFRE protein; 97.2 0.0039 1.3E-07 40.5 9.0 67 266-333 4-73 (93)
212 3qww_A SET and MYND domain-con 97.2 0.0022 7.4E-08 55.1 9.6 87 280-366 310-410 (433)
213 2kc7_A BFR218_protein; tetratr 97.1 0.0042 1.4E-07 40.7 9.1 58 30-88 7-65 (99)
214 3qwp_A SET and MYND domain-con 97.1 0.0065 2.2E-07 52.2 11.6 92 275-366 294-399 (429)
215 3qww_A SET and MYND domain-con 97.0 0.0024 8.3E-08 54.8 8.5 85 142-226 312-410 (433)
216 3mkq_A Coatomer beta'-subunit; 97.0 0.044 1.5E-06 51.6 17.6 46 103-154 662-707 (814)
217 3mkq_A Coatomer beta'-subunit; 97.0 0.084 2.9E-06 49.7 19.6 130 167-329 633-762 (814)
218 2kc7_A BFR218_protein; tetratr 97.0 0.009 3.1E-07 39.0 9.5 60 64-124 6-66 (99)
219 3bee_A Putative YFRE protein; 96.9 0.019 6.6E-07 37.1 10.5 68 20-88 3-73 (93)
220 4h7y_A Dual specificity protei 96.9 0.013 4.6E-07 41.0 10.0 102 232-335 12-126 (161)
221 3qwp_A SET and MYND domain-con 96.9 0.0064 2.2E-07 52.3 10.4 88 139-226 298-399 (429)
222 1pc2_A Mitochondria fission pr 96.9 0.0039 1.3E-07 44.3 7.3 84 248-333 13-101 (152)
223 1pc2_A Mitochondria fission pr 96.9 0.019 6.4E-07 40.8 10.7 79 77-157 17-100 (152)
224 4h7y_A Dual specificity protei 96.7 0.031 1.1E-06 39.2 10.4 51 247-298 74-124 (161)
225 2v5f_A Prolyl 4-hydroxylase su 96.7 0.02 6.9E-07 38.0 9.4 66 22-87 4-75 (104)
226 3u64_A Protein TP_0956; tetrat 96.6 0.19 6.6E-06 40.0 16.8 84 180-265 180-272 (301)
227 3mkq_B Coatomer subunit alpha; 96.6 0.061 2.1E-06 39.2 11.6 46 33-84 15-60 (177)
228 1wy6_A Hypothetical protein ST 96.5 0.099 3.4E-06 35.9 14.8 65 269-334 92-156 (172)
229 3u64_A Protein TP_0956; tetrat 96.5 0.04 1.4E-06 43.8 11.1 96 37-134 177-283 (301)
230 1wy6_A Hypothetical protein ST 96.5 0.11 3.7E-06 35.7 16.2 66 128-194 91-156 (172)
231 2v5f_A Prolyl 4-hydroxylase su 96.4 0.044 1.5E-06 36.3 9.7 64 269-332 6-75 (104)
232 4ady_A RPN2, 26S proteasome re 96.1 0.78 2.7E-05 43.2 19.0 257 68-331 384-657 (963)
233 1nzn_A CGI-135 protein, fissio 95.9 0.24 8.2E-06 33.8 11.2 85 37-123 15-104 (126)
234 1nzn_A CGI-135 protein, fissio 95.9 0.069 2.4E-06 36.4 8.3 86 245-332 13-103 (126)
235 3mkq_B Coatomer subunit alpha; 95.8 0.35 1.2E-05 35.3 16.3 128 207-364 14-141 (177)
236 4b4t_P 26S proteasome regulato 94.9 1.7 5.7E-05 37.5 18.7 188 2-190 30-245 (445)
237 4gns_B Protein CSD3, chitin bi 94.7 0.33 1.1E-05 44.6 11.5 127 62-189 252-397 (754)
238 2ff4_A Probable regulatory pro 94.4 0.22 7.6E-06 42.1 9.2 73 95-168 173-250 (388)
239 3lvg_A Clathrin heavy chain 1; 94.4 0.00019 6.6E-09 60.8 -9.1 82 22-111 53-134 (624)
240 2ff4_A Probable regulatory pro 94.4 0.82 2.8E-05 38.6 12.6 66 274-340 177-247 (388)
241 4gns_B Protein CSD3, chitin bi 94.1 0.33 1.1E-05 44.6 10.0 50 266-317 611-660 (754)
242 1qsa_A Protein (soluble lytic 93.9 3.6 0.00012 37.2 21.8 287 62-367 76-410 (618)
243 1v54_E Cytochrome C oxidase po 93.3 1 3.5E-05 29.1 8.7 62 283-345 25-86 (109)
244 4fhn_B Nucleoporin NUP120; pro 93.1 6.2 0.00021 38.8 17.7 80 131-212 902-985 (1139)
245 4b4t_P 26S proteasome regulato 93.1 3.9 0.00013 35.2 17.6 189 141-330 29-245 (445)
246 3o48_A Mitochondria fission 1 92.9 0.85 2.9E-05 31.3 8.1 69 264-332 36-107 (134)
247 4ady_A RPN2, 26S proteasome re 92.6 7.3 0.00025 37.0 22.6 151 140-296 502-657 (963)
248 1y8m_A FIS1; mitochondria, unk 92.5 1.9 6.4E-05 30.1 10.2 70 264-333 35-107 (144)
249 3lvg_A Clathrin heavy chain 1; 92.3 0.00023 7.9E-09 60.3 -11.9 264 58-358 54-324 (624)
250 1qsa_A Protein (soluble lytic 91.9 6.9 0.00024 35.3 22.6 317 26-366 10-347 (618)
251 1v54_E Cytochrome C oxidase po 91.9 1.6 5.6E-05 28.1 9.1 62 214-276 26-87 (109)
252 2y69_E Cytochrome C oxidase su 91.8 2.1 7.3E-05 29.3 8.7 62 283-345 68-129 (152)
253 2p58_C Putative type III secre 91.7 1.7 5.9E-05 27.9 7.8 78 38-123 22-99 (116)
254 3o48_A Mitochondria fission 1 90.9 2.7 9.4E-05 28.8 8.8 68 55-122 37-107 (134)
255 4fhn_B Nucleoporin NUP120; pro 90.9 6.9 0.00024 38.5 15.2 147 203-356 817-989 (1139)
256 2uwj_G Type III export protein 90.7 1.6 5.6E-05 28.0 6.9 78 38-123 21-98 (115)
257 2y69_E Cytochrome C oxidase su 89.7 3.6 0.00012 28.3 9.2 61 215-276 70-130 (152)
258 3ffl_A Anaphase-promoting comp 88.9 2.4 8.3E-05 30.4 7.6 118 235-365 22-149 (167)
259 4b4t_R RPN7, 26S proteasome re 88.6 5.9 0.0002 33.9 11.5 98 60-157 133-237 (429)
260 4b4t_R RPN7, 26S proteasome re 87.5 11 0.00038 32.3 12.4 98 94-191 132-236 (429)
261 1zbp_A Hypothetical protein VP 85.3 8.7 0.0003 30.2 9.5 56 31-87 5-60 (273)
262 1zbp_A Hypothetical protein VP 85.0 4 0.00014 32.0 7.5 116 66-192 5-129 (273)
263 3ffl_A Anaphase-promoting comp 84.2 9.5 0.00033 27.4 9.4 23 132-154 67-89 (167)
264 1wdy_A 2-5A-dependent ribonucl 83.0 11 0.00038 29.5 10.0 12 362-373 270-281 (285)
265 1bpo_A Protein (clathrin); cla 79.3 19 0.00066 30.8 10.0 91 58-150 361-451 (494)
266 1wdy_A 2-5A-dependent ribonucl 78.9 16 0.00055 28.6 9.6 56 98-161 7-65 (285)
267 2wpv_A GET4, UPF0363 protein Y 78.7 25 0.00085 28.5 17.1 110 97-221 37-157 (312)
268 3esl_A Checkpoint serine/threo 77.7 19 0.00067 26.8 9.7 57 71-127 92-149 (202)
269 3eiq_C Programmed cell death p 76.8 31 0.0011 28.6 11.5 78 201-279 220-299 (358)
270 3eiq_C Programmed cell death p 75.1 34 0.0012 28.3 11.5 64 236-300 220-285 (358)
271 2uwj_G Type III export protein 74.2 15 0.00051 23.7 7.4 19 175-193 80-98 (115)
272 2p58_C Putative type III secre 73.3 16 0.00054 23.6 8.0 13 138-150 50-62 (116)
273 1y8m_A FIS1; mitochondria, unk 73.1 21 0.00071 24.9 12.5 69 55-123 36-107 (144)
274 1n11_A Ankyrin; clathrin, BAND 71.5 46 0.0016 28.2 11.3 38 9-46 28-67 (437)
275 3txn_A 26S proteasome regulato 70.8 47 0.0016 28.0 25.3 58 133-190 104-166 (394)
276 3kea_A K1L; tropism, ANK repea 69.9 21 0.00073 28.3 8.1 204 29-259 34-244 (285)
277 3kea_A K1L; tropism, ANK repea 69.0 41 0.0014 26.6 9.8 201 134-361 34-241 (285)
278 2d2s_A Exocyst complex compone 68.1 39 0.0013 26.0 9.1 22 30-51 25-46 (235)
279 2fe3_A Peroxide operon regulat 67.6 28 0.00097 24.2 7.6 43 205-247 28-70 (145)
280 3lpz_A GET4 (YOR164C homolog); 66.9 51 0.0018 27.0 21.9 167 60-260 37-214 (336)
281 2zu6_B Programmed cell death p 66.1 51 0.0017 26.6 11.2 64 236-300 169-234 (307)
282 3ltm_A Alpha-REP4; protein eng 64.9 40 0.0014 25.0 18.4 172 56-247 31-202 (211)
283 3lpz_A GET4 (YOR164C homolog); 63.5 60 0.0021 26.6 23.2 81 231-330 134-214 (336)
284 2fe3_A Peroxide operon regulat 63.2 35 0.0012 23.8 7.4 60 13-73 12-71 (145)
285 3jxi_A Vanilloid receptor-rela 63.0 10 0.00036 29.4 4.9 17 314-330 233-249 (260)
286 3hra_A Ankyrin repeat family p 62.5 36 0.0012 24.8 7.7 15 323-337 158-172 (201)
287 4a1g_A Mitotic checkpoint seri 62.5 38 0.0013 23.9 9.4 72 54-128 64-136 (152)
288 4b4t_S RPN3, 26S proteasome re 62.1 82 0.0028 27.7 10.4 25 25-49 233-257 (523)
289 1mzb_A Ferric uptake regulatio 61.8 31 0.0011 23.7 6.6 34 249-282 34-67 (136)
290 3eyy_A Putative iron uptake re 61.3 28 0.00096 24.3 6.3 33 214-246 33-65 (145)
291 2fu4_A Ferric uptake regulatio 61.1 25 0.00086 21.4 7.4 60 13-73 7-67 (83)
292 2w57_A Ferric uptake regulatio 60.7 34 0.0012 24.1 6.7 58 189-247 8-66 (150)
293 3jxi_A Vanilloid receptor-rela 60.6 14 0.00047 28.7 5.2 23 344-366 228-250 (260)
294 1mzb_A Ferric uptake regulatio 60.4 38 0.0013 23.2 6.8 61 13-74 8-69 (136)
295 1k1a_A B-cell lymphoma 3-encod 60.1 53 0.0018 24.8 11.0 22 137-158 15-36 (241)
296 4aez_C MAD3, mitotic spindle c 59.9 18 0.00062 27.5 5.3 54 40-93 131-185 (223)
297 2xig_A Ferric uptake regulatio 59.5 43 0.0015 23.5 8.4 60 13-73 17-76 (150)
298 2w57_A Ferric uptake regulatio 59.3 43 0.0015 23.5 7.2 62 12-74 6-68 (150)
299 2wpv_A GET4, UPF0363 protein Y 59.1 70 0.0024 25.9 20.6 167 60-260 35-215 (312)
300 3eyy_A Putative iron uptake re 59.0 35 0.0012 23.8 6.5 60 12-73 8-67 (145)
301 1k1a_A B-cell lymphoma 3-encod 58.9 55 0.0019 24.6 11.5 26 101-126 14-39 (241)
302 4a1g_A Mitotic checkpoint seri 57.9 47 0.0016 23.5 9.3 50 287-336 84-134 (152)
303 4g8k_A 2-5A-dependent ribonucl 57.5 74 0.0025 25.7 12.4 105 253-373 219-329 (337)
304 4ets_A Ferric uptake regulatio 57.5 45 0.0016 23.8 7.0 57 15-72 25-83 (162)
305 3eu9_A Huntingtin-interacting 57.4 26 0.0009 26.4 6.3 19 345-363 214-232 (240)
306 3eu9_A Huntingtin-interacting 57.0 41 0.0014 25.2 7.4 53 275-331 181-235 (240)
307 3l6a_A Eukaryotic translation 56.9 84 0.0029 26.1 9.8 213 97-315 16-245 (364)
308 3esl_A Checkpoint serine/threo 56.1 61 0.0021 24.2 12.5 56 246-301 92-148 (202)
309 4ets_A Ferric uptake regulatio 56.0 46 0.0016 23.8 6.8 44 204-247 38-83 (162)
310 3bu8_A Telomeric repeat-bindin 55.6 64 0.0022 24.3 10.8 98 25-122 19-143 (235)
311 3b7b_A Euchromatic histone-lys 54.8 63 0.0021 24.3 8.1 53 311-367 182-236 (237)
312 1oai_A Nuclear RNA export fact 53.2 12 0.00041 21.4 2.6 21 3-23 35-56 (59)
313 2xig_A Ferric uptake regulatio 53.1 56 0.0019 22.9 8.1 58 119-177 18-75 (150)
314 2wvi_A Mitotic checkpoint seri 52.1 63 0.0021 23.2 9.1 70 265-337 60-130 (164)
315 2zu6_B Programmed cell death p 51.8 93 0.0032 25.1 10.5 65 306-371 169-235 (307)
316 3hra_A Ankyrin repeat family p 51.6 66 0.0023 23.3 8.0 15 288-302 158-172 (201)
317 1ug3_A EIF4GI, eukaryotic prot 50.6 1E+02 0.0035 25.2 9.9 21 64-84 17-37 (339)
318 2fu4_A Ferric uptake regulatio 50.5 40 0.0014 20.4 6.2 58 294-352 8-66 (83)
319 1zl8_A LIN-7; heterodimer, alp 49.4 30 0.001 18.8 4.6 18 2-19 7-24 (53)
320 4aez_C MAD3, mitotic spindle c 49.1 40 0.0014 25.6 5.6 52 285-336 131-183 (223)
321 2d2s_A Exocyst complex compone 47.6 93 0.0032 23.9 10.6 30 231-260 89-118 (235)
322 2b7e_A PRE-mRNA processing pro 46.9 18 0.00063 20.6 2.7 30 4-33 2-31 (59)
323 2ion_A PDCD4, programmed cell 46.4 75 0.0026 22.4 8.4 21 99-119 15-35 (152)
324 2o03_A Probable zinc uptake re 45.7 51 0.0017 22.4 5.5 47 28-74 15-61 (131)
325 3txn_A 26S proteasome regulato 45.5 1.4E+02 0.0047 25.2 25.0 159 168-329 104-281 (394)
326 3mwm_A ZUR, putative metal upt 44.9 48 0.0017 22.8 5.3 59 15-74 6-64 (139)
327 2ijq_A Hypothetical protein; s 43.7 87 0.003 22.4 8.7 51 71-121 45-103 (161)
328 3t8k_A Uncharacterized protein 43.0 93 0.0032 22.6 9.1 86 285-370 91-183 (186)
329 2o03_A Probable zinc uptake re 42.9 50 0.0017 22.4 5.1 48 273-320 15-62 (131)
330 2ijq_A Hypothetical protein; s 42.5 90 0.0031 22.3 7.3 60 26-86 36-103 (161)
331 3ltj_A Alpharep-4; protein eng 41.1 1E+02 0.0035 22.4 19.4 17 197-213 151-167 (201)
332 3mwm_A ZUR, putative metal upt 39.8 47 0.0016 22.9 4.6 49 272-320 17-65 (139)
333 2wvi_A Mitotic checkpoint seri 39.4 1E+02 0.0035 22.1 10.5 55 75-129 77-132 (164)
334 3twr_A Tankyrase-2; ankyrin re 39.4 94 0.0032 21.6 6.6 14 208-221 15-28 (165)
335 2yru_A Steroid receptor RNA ac 38.6 61 0.0021 21.7 4.7 43 45-87 48-90 (118)
336 3ljn_A Hypothetical protein; a 38.4 1.6E+02 0.0055 24.0 9.0 47 313-363 218-266 (364)
337 2ion_A PDCD4, programmed cell 37.2 1.1E+02 0.0037 21.6 9.1 62 26-88 12-75 (152)
338 3f3f_C Nucleoporin NUP85; stru 35.6 1.6E+02 0.0054 26.3 7.9 87 26-114 482-570 (570)
339 4gq2_M Nucleoporin NUP120; bet 34.4 2.1E+02 0.0072 27.6 9.4 48 130-177 899-950 (950)
340 2nsz_A Programmed cell death p 34.4 1.1E+02 0.0037 20.8 10.3 22 133-154 12-33 (129)
341 3ljn_A Hypothetical protein; a 34.4 1.9E+02 0.0064 23.6 10.0 46 278-328 218-266 (364)
342 2pnn_A Transient receptor pote 34.2 86 0.0029 24.3 6.0 21 138-158 20-40 (273)
343 2yru_A Steroid receptor RNA ac 33.7 98 0.0033 20.7 5.1 41 81-121 49-89 (118)
344 1ug3_A EIF4GI, eukaryotic prot 33.2 2E+02 0.0068 23.5 9.2 25 26-50 14-38 (339)
345 3ygs_P Procaspase 9; apoptosis 32.2 98 0.0034 19.7 7.2 34 213-250 52-85 (97)
346 4fke_A Aminopeptidase N; zinc 31.6 3.5E+02 0.012 25.9 17.8 48 140-190 738-785 (909)
347 3ltm_A Alpha-REP4; protein eng 31.6 1.5E+02 0.0052 21.7 18.9 170 91-280 31-200 (211)
348 2nsz_A Programmed cell death p 31.4 1.2E+02 0.0042 20.5 10.5 62 26-88 10-73 (129)
349 1n11_A Ankyrin; clathrin, BAND 31.4 2.3E+02 0.008 23.7 10.5 302 28-373 16-339 (437)
350 2rfa_A Transient receptor pote 30.5 1.7E+02 0.0057 21.7 9.1 56 310-366 158-222 (232)
351 3bqo_A Telomeric repeat-bindin 30.3 74 0.0025 23.6 4.3 19 67-85 126-144 (211)
352 4fke_A Aminopeptidase N; zinc 30.3 3.7E+02 0.013 25.7 18.9 159 167-331 690-859 (909)
353 4b4t_S RPN3, 26S proteasome re 29.8 2.9E+02 0.0099 24.3 11.7 27 93-119 231-257 (523)
354 3t8k_A Uncharacterized protein 29.2 1.6E+02 0.0055 21.2 9.7 18 286-303 131-149 (186)
355 2jp7_A MRNA export factor MEX6 28.8 21 0.00071 20.2 1.0 20 3-23 34-53 (57)
356 3bge_A Predicted ATPase; struc 28.6 1.8E+02 0.0062 21.6 8.6 22 212-233 21-42 (201)
357 2r9g_A AAA ATPase, central reg 28.0 1.9E+02 0.0064 21.6 10.7 32 176-208 27-58 (204)
358 2etb_A Transient receptor pote 27.6 80 0.0027 24.1 4.7 27 30-56 6-32 (256)
359 4g8k_A 2-5A-dependent ribonucl 27.3 2.4E+02 0.0082 22.6 9.0 149 170-338 172-329 (337)
360 3pvs_A Replication-associated 27.2 3E+02 0.01 23.6 13.4 56 105-160 267-327 (447)
361 2r9g_A AAA ATPase, central reg 26.8 2E+02 0.0068 21.5 10.3 17 247-263 28-44 (204)
362 2pnn_A Transient receptor pote 26.8 1E+02 0.0035 23.8 5.2 14 314-327 241-254 (273)
363 3c1d_A Protein ORAA, regulator 26.7 1.7E+02 0.0058 20.7 11.5 48 41-90 48-95 (159)
364 3pvs_A Replication-associated 26.5 3.1E+02 0.01 23.5 14.4 54 211-264 268-326 (447)
365 2keb_A DNA polymerase subunit 26.5 1.3E+02 0.0045 19.3 6.7 31 112-142 28-58 (101)
366 1wgl_A TOLL-interacting protei 26.3 94 0.0032 17.6 3.5 23 350-372 35-57 (59)
367 3qil_A Clathrin heavy chain 1; 25.5 53 0.0018 22.1 2.6 50 96-148 35-84 (125)
368 3lxu_X Tripeptidyl-peptidase 2 25.2 4.5E+02 0.015 26.6 9.8 85 284-371 1265-1349(1354)
369 3d5l_A Regulatory protein RECX 25.1 2.2E+02 0.0076 21.5 9.6 49 76-125 94-142 (221)
370 3bge_A Predicted ATPase; struc 24.7 2.2E+02 0.0074 21.2 8.9 20 142-161 21-40 (201)
371 3qil_A Clathrin heavy chain 1; 24.4 88 0.003 21.0 3.5 51 271-324 35-85 (125)
372 2rfa_A Transient receptor pote 24.3 2.2E+02 0.0074 21.1 9.9 58 311-372 126-185 (232)
373 1q2z_A ATP-dependent DNA helic 23.7 42 0.0014 22.5 2.0 50 37-89 41-94 (120)
374 3ctd_A Putative ATPase, AAA fa 23.6 2.4E+02 0.0081 21.2 9.5 20 212-231 49-68 (213)
375 2rg8_A Programmed cell death p 23.6 1.1E+02 0.0037 21.9 4.2 24 167-190 14-37 (165)
376 2etb_A Transient receptor pote 23.1 2.5E+02 0.0084 21.2 8.0 20 104-123 10-29 (256)
377 3qye_A TBC1 domain family memb 22.8 2.8E+02 0.0095 22.5 7.2 130 5-143 166-309 (331)
378 2p22_A Suppressor protein STP2 22.2 1.4E+02 0.0047 21.6 4.4 54 90-144 108-161 (174)
379 3aji_A 26S proteasome non-ATPa 22.0 2.4E+02 0.0083 20.7 10.1 19 135-153 10-28 (231)
380 1bd8_A P19INK4D CDK4/6 inhibit 21.9 1.8E+02 0.0061 19.7 5.3 12 175-186 11-22 (156)
381 3ltj_A Alpharep-4; protein eng 21.7 2.3E+02 0.0079 20.4 20.3 76 197-280 120-195 (201)
382 2dzn_A Probable 26S proteasome 21.2 2E+02 0.007 21.1 5.8 179 170-372 6-202 (228)
383 1wty_A Hypothetical protein TT 21.1 1.9E+02 0.0064 19.1 7.4 76 249-331 4-80 (119)
384 3aji_A 26S proteasome non-ATPa 21.0 2.5E+02 0.0087 20.6 9.9 20 99-118 9-28 (231)
385 2ko4_A Mediator of RNA polymer 21.0 1.5E+02 0.0052 18.0 3.8 33 18-50 31-63 (81)
386 3rjo_A Endoplasmic reticulum a 20.9 3.8E+02 0.013 22.6 19.1 141 167-316 201-353 (419)
387 2qfz_A TBC1 domain family memb 20.7 2.7E+02 0.0094 22.7 6.8 111 5-119 189-312 (345)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=270.04 Aligned_cols=357 Identities=10% Similarity=-0.055 Sum_probs=185.1
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|+++|+.+... .|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+|.+.|++++|.++|
T Consensus 98 g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 173 (597)
T 2xpi_A 98 QQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLL 173 (597)
T ss_dssp TCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 5677777777777643 356666777777777777777777777766432 456667777777777777777777776
Q ss_pred HHHHhC---------------CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC----------------------
Q 016681 82 DRIHGK---------------RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---------------------- 124 (384)
Q Consensus 82 ~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------- 124 (384)
+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp CSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHH
T ss_pred hccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHH
Confidence 642211 1123466667777777777777777776666654321
Q ss_pred ------------------------------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681 125 ------------------------------------------------IHDTIAYSLIVYAKVKMRNLESALVVYEEMLK 156 (384)
Q Consensus 125 ------------------------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 156 (384)
+++..+++.++..+.+.|++++|.++|+++.+
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 14556666666667777777777777776665
Q ss_pred cCCC---------------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 016681 157 RGFS---------------------------------ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL 203 (384)
Q Consensus 157 ~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (384)
.+.. .+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.
T Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 412 (597)
T 2xpi_A 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG 412 (597)
T ss_dssp HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4322 123334444444444444444444444443322 122334444
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE 283 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (384)
++..|.+.|++++|.++|+++.+.++. +..++..++.+|.+.|++++|..+|+.+.+..+ .+..+|+.++..|.+.|+
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence 444444444444444444444433221 334444444444444444444444444443322 134444444444444444
Q ss_pred HHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHH
Q 016681 284 IQEVLKLYYEMEYK----SISPT--LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKA 357 (384)
Q Consensus 284 ~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 357 (384)
+++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.++. +..+|..+..+|.+.|++++|
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence 44444444444333 33333 334444444444444444444444444443211 344444444444444444444
Q ss_pred HHHHHHHHh
Q 016681 358 LHLCEEMVS 366 (384)
Q Consensus 358 ~~~~~~~~~ 366 (384)
.+.++++.+
T Consensus 570 ~~~~~~~l~ 578 (597)
T 2xpi_A 570 ITHLHESLA 578 (597)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-35 Score=265.95 Aligned_cols=342 Identities=10% Similarity=-0.024 Sum_probs=275.1
Q ss_pred CcchHHHHHHHHHHHh-c--------------CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC----------
Q 016681 1 MRLFEVAFDVCRYLEQ-R--------------GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY---------- 55 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 55 (384)
.|++++|+++|+++.. . |.++++.+|+.++..|.+.|++++|.++|+++.+.+..
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 3677777777774221 1 22345777788888888888888888888877764321
Q ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHccCChH
Q 016681 56 ------------------------------------------------------------PNEATIRTLISALCKGGQLQ 75 (384)
Q Consensus 56 ------------------------------------------------------------~~~~~~~~l~~~~~~~~~~~ 75 (384)
++..+++.++..+.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 44555666666666667777
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 76 TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML 155 (384)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 155 (384)
+|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.
T Consensus 323 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777776666554 4456666666667777777777777777666543 3478889999999999999999999999998
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681 156 KRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA 235 (384)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (384)
+... .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+. +..+
T Consensus 401 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 477 (597)
T 2xpi_A 401 TMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLL 477 (597)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 8633 368899999999999999999999999998875 467789999999999999999999999999987654 7889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDK----GFSPN--EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSL 309 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 309 (384)
|..++..+.+.|++++|..+|+.+.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 556 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 999999999999999999999999876 66777 7899999999999999999999999999876 5578999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHh
Q 016681 310 ISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (384)
..+|.+.|++++|.+.|+++.+..+. +...+..+...|.
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 99999999999999999999987544 5677777766553
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-34 Score=251.13 Aligned_cols=206 Identities=11% Similarity=0.091 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhcCCCCchh-hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------hH
Q 016681 6 VAFDVCRYLEQRGFSLSLI-SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ---------LQ 75 (384)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 75 (384)
.+..+.+.+.+.+..+++. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4556667777777665554 5889999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 76 TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML 155 (384)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 155 (384)
.|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 016681 156 KRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA 211 (384)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (384)
+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.7e-31 Score=226.14 Aligned_cols=360 Identities=13% Similarity=0.059 Sum_probs=318.5
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|
T Consensus 13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78999999999998774 4467778888889999999999999999988864 357889999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+... .
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~ 167 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N 167 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 9998875 667788999999999999999999999999987543 566778888899999999999999999988743 3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+..+. +..++..+..
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 245 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHH
Confidence 67889999999999999999999999999865 445678889999999999999999999999887644 6788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
++...|++++|...++.+.+..+. +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987543 67889999999999999999999999999874 6678899999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 322 ADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
|...++++.+..+. +..++..+...+.+.|++++|...++++.+. .|+.
T Consensus 324 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 372 (388)
T 1w3b_A 324 AVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF 372 (388)
T ss_dssp HHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Confidence 99999999986433 6788999999999999999999999999864 4543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-33 Score=247.69 Aligned_cols=203 Identities=11% Similarity=0.153 Sum_probs=108.4
Q ss_pred HHHHHHHHhCCCCCcH-HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------hHHH
Q 016681 78 VDMLDRIHGKRCSPMV-IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN---------LESA 147 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 147 (384)
..+.+++.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444433322 24555666666666666666666666666666666666666666655433 3455
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 148 LVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681 228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK 280 (384)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (384)
|+.||..+|+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-28 Score=212.23 Aligned_cols=342 Identities=16% Similarity=0.076 Sum_probs=301.0
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|...++...+.. +.+..+|..+...+.+.|++++|...|+++.+..+ .+..+|..+...+.+.|++++|.+.
T Consensus 46 ~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 378899999999988764 56889999999999999999999999999998643 3567899999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...|+++.+....
T Consensus 124 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 124 YVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99998876 556778888999999999999999999999987543 6789999999999999999999999999987543
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
+...+..+...+...|++++|...+++..... +.+..++..+...+.+.|++++|...++++.+.++. +..++..+.
T Consensus 202 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 278 (388)
T 1w3b_A 202 -FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLA 278 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 67789999999999999999999999998765 345688999999999999999999999999987654 677899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
..+.+.|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|+++
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999874 4588999999999999999999999999998864 456788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681 321 EADKYFKIMKSHSLVPGVDIYESLVGIHLEKG 352 (384)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 352 (384)
+|...|+++.+..+. +...|..+...+...|
T Consensus 357 ~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 357 EALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 999999999986543 5677777777766655
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-26 Score=204.76 Aligned_cols=358 Identities=9% Similarity=-0.047 Sum_probs=303.2
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|++.|+.+.+.. |+..+|..+..++.+.|++++|...++.+.+.++ .+..++..+..++...|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 489999999999999875 6899999999999999999999999999998754 3678999999999999999999999
Q ss_pred HHHHHhCCCCCc--------------------------------------------------------------------
Q 016681 81 LDRIHGKRCSPM-------------------------------------------------------------------- 92 (384)
Q Consensus 81 ~~~~~~~~~~~~-------------------------------------------------------------------- 92 (384)
|+++...+ +++
T Consensus 96 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 99987765 221
Q ss_pred -----------HHhHHHHHHHHHh---hcchHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCChH
Q 016681 93 -----------VIVNTSLILRIIQ---EERIEEGMVLLKRMLR-----KNM--------IHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 93 -----------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~~~~~ 145 (384)
...+......+.. .|++++|...++++.+ ... +.+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 2233333333333 8999999999999988 311 123567788888999999999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+|...++++.+.... ...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..
T Consensus 255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999887544 8888999999999999999999999998765 4566788999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC--
Q 016681 226 SRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT-- 302 (384)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 302 (384)
+..+. +...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.... ++
T Consensus 332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 87655 677889999999999999999999999988643 36788999999999999999999999998765311 11
Q ss_pred --hhhHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 303 --LPAYTSLISSLCQ---CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 303 --~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
..++..+...+.. .|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 2388889999999 99999999999999886543 67888999999999999999999999998753
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.4e-25 Score=197.18 Aligned_cols=349 Identities=11% Similarity=0.046 Sum_probs=281.3
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 016681 6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIH 85 (384)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 85 (384)
.+...|..+.... +.++..+..+...+.+.|++++|..+|+.+.+... .+..++..+...+...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555443 55788899999999999999999999999998643 478899999999999999999999999999
Q ss_pred hCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCChHHHHHH
Q 016681 86 GKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT---IAYSLI------------VYAKVKMRNLESALVV 150 (384)
Q Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~~~~~~a~~~ 150 (384)
+.+ +.+..++..+...+.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876 667889999999999999999999999999886432 33 455544 4448899999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681 151 YEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL 230 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (384)
|+++.+... .+...+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+..+.
T Consensus 166 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999988743 378889999999999999999999999998764 456788999999999999999999999999876543
Q ss_pred CChhhHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 231 PSCSAFNEM------------IRRLCECGNAKQANGMLTLALDKGFSPN----EITYSHLIGGYAKEGEIQEVLKLYYEM 294 (384)
Q Consensus 231 ~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (384)
+...+..+ ...+...|++++|...++.+.+..+. + ...+..+...+.+.|++++|...++++
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44445444 78899999999999999999886432 2 447888899999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH------------HHhccC-----CHHHH
Q 016681 295 EYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG------------IHLEKG-----NKAKA 357 (384)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a 357 (384)
.+.. +.+..+|..+..+|...|++++|...++++.+..+. +...+..+.. .|...| +.+++
T Consensus 322 ~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 322 LQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 8764 456789999999999999999999999999986544 5666666663 244444 55677
Q ss_pred HHHHHHH
Q 016681 358 LHLCEEM 364 (384)
Q Consensus 358 ~~~~~~~ 364 (384)
.+.++++
T Consensus 400 ~~~y~~~ 406 (450)
T 2y4t_A 400 IKAYRKL 406 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8878763
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=2.8e-24 Score=188.86 Aligned_cols=347 Identities=12% Similarity=0.055 Sum_probs=277.0
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|+++|+.+.+.. +.+..+|..+..++...|++++|...|+.+.+.+. .+..++..+...+.+.|++++|...
T Consensus 39 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 488999999999998864 45889999999999999999999999999998754 3688999999999999999999999
Q ss_pred HHHHHhCCCCCcH---HhHHHH------------HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 81 LDRIHGKRCSPMV---IVNTSL------------ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
|+++.... +.+. ..+..+ ...+...|++++|.+.|+++.+.... +..++..+..++.+.|+++
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 117 FKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPR 194 (450)
T ss_dssp HHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHH
Confidence 99999875 4455 666655 44488999999999999999987543 7888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH------------HHHHHhcCc
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLL------------IEGCAKAKR 213 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~ 213 (384)
+|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+ ...+.+.|+
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998763 3378899999999999999999999999998754 2333444444 788999999
Q ss_pred hHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 016681 214 IEESLSYCEQMMSRKLLPS----CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLK 289 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (384)
+++|...++++.+..+. + ...+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|..
T Consensus 273 ~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 273 YTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp HHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999886433 2 3478888999999999999999999998764 3378999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHH------------HHhcC-----ChHHHHHHHHH-HhhCCC--CCCH-------hHHH
Q 016681 290 LYYEMEYKSISPTLPAYTSLISS------------LCQCG-----KLEEADKYFKI-MKSHSL--VPGV-------DIYE 342 (384)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~-~~~~~~--~~~~-------~~~~ 342 (384)
.++++.+.. +-+...+..+..+ |...| +.+++.+.+++ ..+..+ .|+. ..+.
T Consensus 351 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~ 429 (450)
T 2y4t_A 351 DYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI 429 (450)
T ss_dssp HHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH
Confidence 999999863 2344555555532 33333 55677777776 333221 1221 2455
Q ss_pred HHHHHHhccCCHHH
Q 016681 343 SLVGIHLEKGNKAK 356 (384)
Q Consensus 343 ~l~~~~~~~g~~~~ 356 (384)
.+..+|...|+.++
T Consensus 430 ~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 430 DIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHSSGGGG
T ss_pred HHHHHHHHhCCHHH
Confidence 56666666555544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.1e-23 Score=187.56 Aligned_cols=359 Identities=12% Similarity=0.045 Sum_probs=286.3
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|++.|+.+.+.. +.++.+|..+..++.+.|++++|++.|+.+.+.++ .+..++..+...+...|++++|...
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 478999999999998875 45889999999999999999999999999998754 3788899999999999999999999
Q ss_pred HHHHHhCCCC------------------------------------CcHH------------------------------
Q 016681 81 LDRIHGKRCS------------------------------------PMVI------------------------------ 94 (384)
Q Consensus 81 ~~~~~~~~~~------------------------------------~~~~------------------------------ 94 (384)
|+.+....-. |+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 9644211100 0000
Q ss_pred hHHHHHHHHH--------hhcchHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 95 VNTSLILRII--------QEERIEEGMVLLKRMLRKNMIHDT-------IAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 95 ~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
....+...+. ..|++++|..+++++.+.... +. .++..+...+...|++++|...++.+.+..
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~- 273 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 1111111111 124788999999999876533 32 346667778889999999999999999874
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 160 SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+..+
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 350 (537)
T 3fp2_A 274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQL 350 (537)
T ss_dssp -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHH
T ss_pred -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 457888899999999999999999999998865 456788999999999999999999999999887654 57789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCChhhHHHHHHHHH
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSI-----SPTLPAYTSLISSLC 314 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 314 (384)
...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++++.+... ......+..+...+.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~ 429 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 3677899999999999999999999999876531 111122344456777
Q ss_pred hc----------CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 315 QC----------GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 315 ~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.. |++++|...|+++.+..+. +...+..+...+...|++++|.+.++++.+..
T Consensus 430 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 430 RQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77 9999999999999986544 67889999999999999999999999998753
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.3e-24 Score=189.40 Aligned_cols=339 Identities=11% Similarity=0.006 Sum_probs=286.3
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
.+..+......+.+.|++++|+..|+.+.+.. |+..++..+..++.+.|++++|...++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 45667788899999999999999999999875 799999999999999999999999999999876 677889999999
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCC-------------------------------------------------------
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIH------------------------------------------------------- 126 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 126 (384)
++.+.|++++|...|+++...+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988765311
Q ss_pred -----------------------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CCChHHHH
Q 016681 127 -----------------------DTIAYSLIVYAKVK---MRNLESALVVYEEMLK-----RGF--------SANSFVYT 167 (384)
Q Consensus 127 -----------------------~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 167 (384)
+...+......+.. .|++++|...++++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 12223333333443 7999999999999987 311 22356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 88899999999999999999998865 33788899999999999999999999999987654 6778999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
++++|...++.+.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987544 67889999999999999999999999998774 4467788899999999999999999999
Q ss_pred HHhhCCCC-CC----HhHHHHHHHHHhc---cCCHHHHHHHHHHHHhCC
Q 016681 328 IMKSHSLV-PG----VDIYESLVGIHLE---KGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 328 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 368 (384)
++.+.... ++ ...+..+...+.. .|++++|...++++.+..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 98774322 11 3388899999999 999999999999998753
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=3.7e-22 Score=169.81 Aligned_cols=319 Identities=11% Similarity=0.067 Sum_probs=226.0
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
++..+..+...+...|++++|...|+.+.+..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456777888888889999999999988887643 367788888888888999999999998888765 556788888888
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLI------------VYAKVKMRNLESALVVYEEMLKRGFSANSFVYT 167 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (384)
.+...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHH
Confidence 888999999999999988876430 133344433 4667777888888888888776633 3667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH----------
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN---------- 237 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 237 (384)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 77788888888888888888777654 445667777777778888888888888877765433 333222
Q ss_pred --HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 238 --EMIRRLCECGNAKQANGMLTLALDKGFSPNE----ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 238 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
.+...+...|++++|...++.+.+..+. +. ..+..+...+...|++++|...+++..+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2245567777777777777777765332 22 224445667777777777777777777653 345667777777
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 016681 312 SLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH 348 (384)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (384)
.+...|++++|...|+++.+..+. +...+..+..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 350 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQ 350 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 777777777777777777765433 445555554443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.1e-21 Score=166.88 Aligned_cols=308 Identities=12% Similarity=0.025 Sum_probs=259.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45677888899999999999999999998876 667889999999999999999999999999987543 6788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--CChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 016681 137 AKVKMRNLESALVVYEEMLKRGFS--ANSFVYTTF------------IGAYCEYGKIEEANCLMQEMENAGLKPYDETFN 202 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (384)
.+...|++++|...++++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886330 244444444 578899999999999999998875 45678889
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHH---------
Q 016681 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSH--------- 273 (384)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 273 (384)
.+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.+..+. +...+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654 7889999999999999999999999999886433 4444432
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681 274 ---LIGGYAKEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG 346 (384)
Q Consensus 274 ---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 346 (384)
+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3666889999999999999998864 2222 23455778899999999999999999986433 7889999999
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 347 IHLEKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 347 ~~~~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
.+...|++++|...++++.+. .|+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 999999999999999999975 3553
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-21 Score=165.04 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=199.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 44455555666666666777776666666554 445555556666666677777777777776665432 4556666666
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681 137 AKVKMR-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 137 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (384)
.+...| ++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 677777 67777777777666532 245666677777777777777777777776654 233455666777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG--------FSPNEITYSHLIGGYAKEGEIQEV 287 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 287 (384)
+|...+++..+..+. +...+..+...+...|++++|...++.+.+.. .+.....+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777766543 56677777777788888888888877776531 133456788888888888888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHH-hccCCHH
Q 016681 288 LKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIH-LEKGNKA 355 (384)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 355 (384)
...+++..+.. +.+..++..+...+...|++++|...|+++.+..+. +...+..+..++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 88888887764 346677888888888889999999888888876533 667777777776 4556543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.4e-21 Score=162.87 Aligned_cols=295 Identities=8% Similarity=-0.066 Sum_probs=249.2
Q ss_pred CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHH
Q 016681 19 FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTS 98 (384)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (384)
.+.++..+..+...+...|++++|.++|+.+.+... .+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 456788888999999999999999999999998744 355667778888899999999999999998876 667889999
Q ss_pred HHHHHHhhc-chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 99 LILRIIQEE-RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 99 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
+...+...| ++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 999999999999987543 6778999999999999999999999999887433 5677778999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCh
Q 016681 178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRK--------LLPSCSAFNEMIRRLCECGNA 249 (384)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 249 (384)
++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. .+....++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998865 4566889999999999999999999999987642 133467889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCChH
Q 016681 250 KQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSL-CQCGKLE 320 (384)
Q Consensus 250 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 320 (384)
++|...++.+.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999987543 77889999999999999999999999998764 34666777777777 4555543
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.4e-21 Score=174.06 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=268.3
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
....|..+...+.+.|++++|+..|+.+.+..+ .+...+..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456788889999999999999999999998754 478899999999999999999999999999876 678899999999
Q ss_pred HHHhhcchHHHHHHHHHHHHcCC------------------------------------CCCHH----------------
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNM------------------------------------IHDTI---------------- 129 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~------------------------------------~~~~~---------------- 129 (384)
++...|++++|.+.|+.+..... .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999964311110 01111
Q ss_pred --------------HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHHhcCCHH
Q 016681 130 --------------AYSLIVYAKV--------KMRNLESALVVYEEMLKRGFSAN-------SFVYTTFIGAYCEYGKIE 180 (384)
Q Consensus 130 --------------~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 180 (384)
....+...+. ..+++++|..+++++.+.... + ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 124788899999988876332 2 234666778889999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
+|...++.+.+.. |+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998864 55788888999999999999999999999887654 67889999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-----
Q 016681 261 DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV----- 335 (384)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----- 335 (384)
+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..+.
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 87543 67889999999999999999999999998875 456678899999999999999999999998763211
Q ss_pred CCHhHHHHHHHHHhcc----------CCHHHHHHHHHHHHhC
Q 016681 336 PGVDIYESLVGIHLEK----------GNKAKALHLCEEMVSE 367 (384)
Q Consensus 336 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 367 (384)
.....+......+... |++++|...++++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 1222244555667777 9999999999999875
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.2e-21 Score=164.04 Aligned_cols=290 Identities=11% Similarity=-0.014 Sum_probs=219.1
Q ss_pred ccCChHHHHH-HHHHHHhCCC---CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 70 KGGQLQTYVD-MLDRIHGKRC---SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 70 ~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
..|++++|.+ .+++...... ..+...+..+...+.+.|++++|...|+++.+.... +..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7765544321 113456777788888888888888888888876533 6777888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHh
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNL---------------LIEGCAK 210 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 210 (384)
+|...++++.+... .+..++..+..++...|++++|...++++.... +.+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888888877643 367778888888888888888888888887754 122222211 2333448
Q ss_pred cCchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLK 289 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (384)
.|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998875432 578889999999999999999999999988643 367899999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----------CHhHHHHHHHHHhccCCHHHHHH
Q 016681 290 LYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP----------GVDIYESLVGIHLEKGNKAKALH 359 (384)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~ 359 (384)
.++++.+.. +.+..++..+...+.+.|++++|...|+++.+..+.. ...+|..+..++...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998874 4567788999999999999999999999987743221 26889999999999999999998
Q ss_pred HHHHH
Q 016681 360 LCEEM 364 (384)
Q Consensus 360 ~~~~~ 364 (384)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=4e-18 Score=151.16 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=283.0
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCC
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTK----SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----GGQ 73 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 73 (384)
+++++|++.|+...+.| ++.++..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 67899999999998875 67788888888888 899999999999988764 66777788888887 789
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChH
Q 016681 74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLE 145 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~ 145 (384)
+++|...|++....+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.+
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHH
Confidence 999999999988765 46677778888877 789999999999998875 67788888888887 89999
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHH
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEES 217 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 217 (384)
+|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|
T Consensus 205 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A 278 (490)
T 2xm6_A 205 ISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKA 278 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHH
Confidence 9999999988864 56677778888876 789999999999988765 34566666677776 7899999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 016681 218 LSYCEQMMSRKLLPSCSAFNEMIRRLCEC-----GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG---EIQEVLK 289 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 289 (384)
...|++..+.+ +...+..+...+... +++++|...++...+.+ +...+..+...|...| +.++|.+
T Consensus 279 ~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 279 LEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 99999998765 566777788888887 89999999999998874 5567777888887756 7899999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHH
Q 016681 290 LYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLC 361 (384)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 361 (384)
.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 353 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 426 (490)
T 2xm6_A 353 WFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWF 426 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998874 56788888888888 899999999999999875 57788888888887 89999999999
Q ss_pred HHHHhCCC
Q 016681 362 EEMVSEGL 369 (384)
Q Consensus 362 ~~~~~~~~ 369 (384)
++..+.+.
T Consensus 427 ~~A~~~~~ 434 (490)
T 2xm6_A 427 DTASTNDM 434 (490)
T ss_dssp HHHHHHHC
T ss_pred HHHHHCCC
Confidence 99988764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5e-21 Score=163.54 Aligned_cols=311 Identities=11% Similarity=-0.013 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHH-HHHHHHhcCCC-C--CHHHHHHHHHHHHccCChHHHHH
Q 016681 4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWR-IYQHMLENIRY-P--NEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
|+.+...|+.+.+.+ |+ ++...|++++|.. .|+........ | +...+..+...+.+.|++++|..
T Consensus 17 ~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 17 WDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555554442 22 3334578888888 77765543211 1 34567788888999999999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|.+.++++.+...
T Consensus 86 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 86 LFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999876 677889999999999999999999999999887543 788899999999999999999999999988643
Q ss_pred CCChHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681 160 SANSFVYTT---------------FIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRIEESLSYCEQ 223 (384)
Q Consensus 160 ~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (384)
. +...+.. .+..+...|++++|...++++.+.... ++..++..+...+...|++++|...+++
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 164 A-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp T-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3 2222221 233444899999999999999886521 1468889999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 016681 224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP-- 301 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 301 (384)
+.+..+. +..++..+...+...|++++|...++.+.+..+ .+...+..+...|.+.|++++|...|+++.+.....
T Consensus 243 al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 9887543 678899999999999999999999999988643 368899999999999999999999999987653111
Q ss_pred --------ChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681 302 --------TLPAYTSLISSLCQCGKLEEADKYFKIMK 330 (384)
Q Consensus 302 --------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 330 (384)
...+|..+..++...|++++|..++++..
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15789999999999999999999887543
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=7.7e-21 Score=162.23 Aligned_cols=266 Identities=11% Similarity=-0.003 Sum_probs=212.5
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIG 171 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 171 (384)
+...+..+...+.+.|++++|.+.|+++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 4556778888888899999999999988877543 778888888889999999999999998887643 36778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 016681 172 AYCEYGKIEEANCLMQEMENAGLKPY-----------DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAFNEM 239 (384)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 239 (384)
+|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..+.. +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998887643 22 1223345778889999999999999998875432 67889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKL 319 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 319 (384)
...+...|++++|...++.+.+..+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999999988743 378899999999999999999999999998874 44578899999999999999
Q ss_pred HHHHHHHHHHhhCCCC-----------CCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 016681 320 EEADKYFKIMKSHSLV-----------PGVDIYESLVGIHLEKGNKAKALHLCEE 363 (384)
Q Consensus 320 ~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 363 (384)
++|...|+++.+..+. .+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998763211 1367899999999999999988887665
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=5.2e-21 Score=163.30 Aligned_cols=268 Identities=11% Similarity=-0.035 Sum_probs=217.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|++.|+++.+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 34558888889999999999999999998876 677889999999999999999999999999887543 6888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHH
Q 016681 137 AKVKMRNLESALVVYEEMLKRGFSA---------NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIE 206 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 206 (384)
.+...|++++|...++++.+..... ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999998752110 1223344578899999999999999999886521 15788999999
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
.+...|++++|...+++..+..+. +..++..+..++...|++++|...++.+.+..+. +...+..+...|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887654 7889999999999999999999999999987433 68899999999999999999
Q ss_pred HHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 287 VLKLYYEMEYKSIS-----------PTLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 287 a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998764211 1367889999999999999998887764
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=1.5e-19 Score=151.66 Aligned_cols=266 Identities=9% Similarity=-0.029 Sum_probs=191.7
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAY 173 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (384)
..+..+...+...|++++|..+++++.+.... +..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34445555666666666666666666654332 555566666666666666666666666665522 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCchHHHHHHHHHHHhCCCCCChhhHHH
Q 016681 174 CEYGKIEEANCLMQEMENAGLKPYDETFNLL--------------IE-GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNE 238 (384)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (384)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+..+. +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 66666666666666666543 1122222222 22 366778899999999998887544 6788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 016681 239 MIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGK 318 (384)
Q Consensus 239 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 318 (384)
+...+...|++++|...++.+.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999887643 367889999999999999999999999988764 4567788889999999999
Q ss_pred hHHHHHHHHHHhhCCCCC-----------CHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 319 LEEADKYFKIMKSHSLVP-----------GVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+++|...++++.+..+.. +...|..+..++...|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999988754332 46788899999999999999999887644
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1.2e-16 Score=141.64 Aligned_cols=331 Identities=11% Similarity=0.021 Sum_probs=279.1
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 016681 8 FDVCRYLEQRGFSLSLISFNTLIHVVTK----SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCK----GGQLQTYVD 79 (384)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 79 (384)
++.+....+.| ++.++..+...|.. .+++++|...|+...+.| +...+..+...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 45555555543 78888888888888 899999999999998863 67788888899988 899999999
Q ss_pred HHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 016681 80 MLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVY 151 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 151 (384)
+|++....+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999998865 56677778888887 789999999999998886 67778888888887 78999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHH
Q 016681 152 EEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQ 223 (384)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 223 (384)
++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998874 67788888889988 899999999999998865 34667777777775 7899999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 016681 224 MMSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-----GEIQEVLKLYYEM 294 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 294 (384)
..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..+...|... +++++|...|++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 98875 55677778888887 899999999999998764 566777888888877 8999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhC
Q 016681 295 EYKSISPTLPAYTSLISSLCQCG---KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSE 367 (384)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 367 (384)
.+.+ +...+..+...|...| ++++|.++|++..+.+ +...+..+...|.. .+++++|..++++..+.
T Consensus 323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 8876 4567777888887766 8899999999999874 67888899999988 89999999999999887
Q ss_pred C
Q 016681 368 G 368 (384)
Q Consensus 368 ~ 368 (384)
|
T Consensus 397 ~ 397 (490)
T 2xm6_A 397 G 397 (490)
T ss_dssp T
T ss_pred C
Confidence 6
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=4.6e-19 Score=148.72 Aligned_cols=280 Identities=9% Similarity=-0.020 Sum_probs=162.8
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+......+...|++++|..+|+.+.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 445566777778888888888888888877643 366777777788888888888888888877665 556777777777
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHH-HH-HHHhcCCH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTF-IG-AYCEYGKI 179 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 179 (384)
.+...|++++|.+.++++...... +...+..+.... |+......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888877765432 222222220000 000000011 11 23444555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++.+
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554433 223445555555555555555555555555544322 4455555666666666666666666665
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 260 LDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP-----------TLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
.+..+ .+...+..+...+.+.|++++|.+.++++.+..... +..++..+..++.+.|++++|..++++
T Consensus 233 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55432 245566666666666666666666666665442111 345666666666677777776666654
Q ss_pred H
Q 016681 329 M 329 (384)
Q Consensus 329 ~ 329 (384)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 3
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=5.9e-17 Score=145.08 Aligned_cols=118 Identities=16% Similarity=0.066 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCChHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISAL-CKGGQLQTYVD 79 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~ 79 (384)
.|++++|..+|+.+.+.- |.+...|...+..+.+.|++++|..+|++++.. .|+...|...+... ...|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHH
Confidence 378899999999998863 567888999999999999999999999999875 36777777776533 34577776655
Q ss_pred ----HHHHHHhC-CC-CCcHHhHHHHHHHHHh---------hcchHHHHHHHHHHHH
Q 016681 80 ----MLDRIHGK-RC-SPMVIVNTSLILRIIQ---------EERIEEGMVLLKRMLR 121 (384)
Q Consensus 80 ----~~~~~~~~-~~-~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 121 (384)
+|+..... |. +++...|...+..... .|+++.|..+|++.++
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66665432 32 2456777777776554 6888899999988877
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.9e-20 Score=157.10 Aligned_cols=283 Identities=12% Similarity=0.117 Sum_probs=136.4
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
+|++++|.++++++. ++.+|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 367889999998882 3459999999999999999999999653 5778999999999999999999998
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877664 5567889999999999999999988885 367779999999999999999999999876
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 47999999999999999999999988 2568999999999999999999554443 233455566788
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCC------ChhhHHHHHHHH
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY-KSISP------TLPAYTSLISSL 313 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~ 313 (384)
..|.+.|.+++|..+++...... +-....|+-+...|++- ++++..+.++...+ .+++| +...|..++..|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 44678888888888764 34444444443322 23333 467889999999
Q ss_pred HhcCChHHHHHHH
Q 016681 314 CQCGKLEEADKYF 326 (384)
Q Consensus 314 ~~~g~~~~a~~~~ 326 (384)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999886643
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-17 Score=146.34 Aligned_cols=351 Identities=11% Similarity=-0.026 Sum_probs=234.0
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-----C--CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-----I--RYP-NEATIRTLISALCKGGQLQTYVDMLDRIHGK---- 87 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 87 (384)
+..+..||.+...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345677999999999999999999999887652 1 123 4668899999999999999999999887542
Q ss_pred -C--CCCcHHhHHHHHHHHHhh--cchHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC
Q 016681 88 -R--CSPMVIVNTSLILRIIQE--ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA---KVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 88 -~--~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
+ ......++.....++... +++++|++.|++..+..+. +...+..+..+ +...++.++|.+.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112345666665555544 5789999999999886543 55555555444 3456777889999988877643
Q ss_pred CCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681 160 SANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA 235 (384)
Q Consensus 160 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (384)
. +...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+..+. +..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 2 55566555555444 456788999999887765 455677888899999999999999999999887654 5666
Q ss_pred HHHHHHHHHhc-------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 016681 236 FNEMIRRLCEC-------------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY 296 (384)
Q Consensus 236 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 296 (384)
+..+..+|... +..+.|...++...+..+. +...+..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555332 2356677777777765433 567788889999999999999999999887
Q ss_pred cCCCCChh--hHHHHHH-HHHhcCChHHHHHHHHHHhhCCC-----------------------CCCHhHHHHHHHHHhc
Q 016681 297 KSISPTLP--AYTSLIS-SLCQCGKLEEADKYFKIMKSHSL-----------------------VPGVDIYESLVGIHLE 350 (384)
Q Consensus 297 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~ 350 (384)
....+... .+..+.. .....|++++|+..|++..+... +.+..+|..+...|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 65333221 1222222 23467889999988887765322 2256789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCccc
Q 016681 351 KGNKAKALHLCEEMVSEGL-KPSTSY 375 (384)
Q Consensus 351 ~g~~~~a~~~~~~~~~~~~-~p~~~~ 375 (384)
.|++++|.+.|++.++.+- .|+..+
T Consensus 443 ~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHCC---------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 9999999999999998753 355443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3e-18 Score=140.63 Aligned_cols=253 Identities=12% Similarity=0.063 Sum_probs=131.1
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE 110 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (384)
+.....|+++.|+..++........+.......+.+++...|+++.|+..++. .. +|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~-~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS-APELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS-CHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC-ChhHHHHHHHHHHHcCCCcHH
Confidence 34455666666666655443321111122334455666666666666654433 12 455556666666666666666
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
+|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 344444455566666666666666655 235555666666666666666666666666
Q ss_pred HHcCCCCChhhH---HHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 016681 190 ENAGLKPYDETF---NLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP 266 (384)
Q Consensus 190 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 266 (384)
.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++.+..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 5543 332111 1111222233555555555555555432 24555555555555555555555555555554322
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc
Q 016681 267 NEITYSHLIGGYAKEGEIQE-VLKLYYEMEYK 297 (384)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 297 (384)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44555555555555555543 34555555443
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.4e-18 Score=140.27 Aligned_cols=271 Identities=12% Similarity=0.090 Sum_probs=213.6
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|+++.|+..++.+..............+.++|...|+++.|+..++. .-.|+..++..+...+...++.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 488999999988776543222234566778999999999999987654 2345777888999999999999999999
Q ss_pred HHHHHhCCC-CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 016681 81 LDRIHGKRC-SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF 159 (384)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 159 (384)
++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++.+.+..
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999987653 44677788888999999999999999988 3578899999999999999999999999998874
Q ss_pred CCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhH
Q 016681 160 SANSFVY---TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAF 236 (384)
Q Consensus 160 ~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 236 (384)
|+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+..+. +..++
T Consensus 161 -p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l 237 (291)
T 3mkr_A 161 -EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETL 237 (291)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred -cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 443211 223344555689999999999999874 567788999999999999999999999999988655 78899
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 016681 237 NEMIRRLCECGNAKQ-ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKL 290 (384)
Q Consensus 237 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (384)
..++..+...|+.++ +..+++++.+..+. ++. +.....+.+.++++..-
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHHH
Confidence 999999999999876 67899998876432 332 23334445555555443
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=2e-16 Score=141.67 Aligned_cols=349 Identities=8% Similarity=-0.005 Sum_probs=245.7
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 016681 11 CRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCS 90 (384)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 90 (384)
|+...+.. |-+..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44554443 4588899999984 78999999999999999863 3478889999999999999999999999999874
Q ss_pred CcHHhHHHHHHHH-HhhcchHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 016681 91 PMVIVNTSLILRI-IQEERIEEGMV----LLKRMLRK-NMIH-DTIAYSLIVYAKVK---------MRNLESALVVYEEM 154 (384)
Q Consensus 91 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 154 (384)
|+...|...+... ...|+.+.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5778888777543 34577776665 77766543 4443 55677777766554 67888999999888
Q ss_pred HHcCCCCChHHHHHHHHHH-------------HhcCCHH-----------------------------------------
Q 016681 155 LKRGFSANSFVYTTFIGAY-------------CEYGKIE----------------------------------------- 180 (384)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~----------------------------------------- 180 (384)
.+.........|....... .+.++++
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7631111112222211110 0111222
Q ss_pred -------------------HHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCchH-------HHHHHHHHHHhC
Q 016681 181 -------------------EANCLMQEMENAGLKPYDETFNLLIEGCAK-------AKRIE-------ESLSYCEQMMSR 227 (384)
Q Consensus 181 -------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 227 (384)
++..+|++..... +.+...|......+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 3333444444321 2334555555655554 57776 889999998863
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH
Q 016681 228 KLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE-ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY 306 (384)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 306 (384)
-.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|+.++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 22336788888999999999999999999999986322 33 578888888888999999999999998763 2233333
Q ss_pred HHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 307 TSLISS-LCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 307 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
...... +...|++++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++....+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 332222 33589999999999998876433 67889999999999999999999999998864
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=8.7e-19 Score=147.14 Aligned_cols=284 Identities=12% Similarity=0.085 Sum_probs=137.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV 114 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 114 (384)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 667899999999988 2345999999999999999999999965 3577799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681 115 LLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (384)
.++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 3457788999999999999999998884 367789999999999999999999999976
Q ss_pred CCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH
Q 016681 195 KPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHL 274 (384)
Q Consensus 195 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 274 (384)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 47999999999999999999999998 2788999999999999999999665543 22345556678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC------CHhHHHHHHHH
Q 016681 275 IGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLVP------GVDIYESLVGI 347 (384)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 347 (384)
+..|.+.|++++|..+++...... +-....|+.|..+|++- ++++..+.++..-+. +++| +...|..+...
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988665 55667788887777764 355555544443331 2222 45679999999
Q ss_pred HhccCCHHHHHHHH
Q 016681 348 HLEKGNKAKALHLC 361 (384)
Q Consensus 348 ~~~~g~~~~a~~~~ 361 (384)
|...++++.|....
T Consensus 292 y~~~~e~d~A~~tm 305 (449)
T 1b89_A 292 YDKYEEYDNAIITM 305 (449)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhhchHHHHHHHH
Confidence 99999999988743
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.7e-16 Score=138.91 Aligned_cols=329 Identities=11% Similarity=-0.048 Sum_probs=227.9
Q ss_pred CcchHHHHHHHHHHHhc--------CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcC------CC-CCHHHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQR--------GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENI------RY-PNEATIRTLI 65 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~~~~l~ 65 (384)
+|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.. .. ....++....
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 58899999999887542 123356789999999999999999999998876531 11 1355666665
Q ss_pred HHHHc--cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH---hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 66 SALCK--GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII---QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 66 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
.++.. .+++++|++.|++..+.. |.++..+..+...+. ..++.++|++.+++..+.... +..++..+...+..
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHH
Confidence 55554 457999999999998876 556777766665544 456678899999998876543 56666666555544
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----
Q 016681 141 ----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA----- 211 (384)
Q Consensus 141 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 211 (384)
.+++++|.+++++...... .+...+..+...|...|++++|...+++..+.. +.+..++..+...|...
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999887643 377788999999999999999999999998764 33455666655554322
Q ss_pred --------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH--HHHHHH
Q 016681 212 --------------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEI--TYSHLI 275 (384)
Q Consensus 212 --------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 275 (384)
+..+.|...++...+.++. +..++..+...+...|++++|...|++..+....+... .+..+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456788888888776544 56778889999999999999999999998865443221 222332
Q ss_pred H-HHHhcCCHHHHHHHHHHHHhcC-----------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 276 G-GYAKEGEIQEVLKLYYEMEYKS-----------------------ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 276 ~-~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
. .....|+.++|+..|.+..+.. -+.+..+|..+...+...|++++|.+.|++..+
T Consensus 379 ~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 2346789999999888776542 134567889999999999999999999999988
Q ss_pred CCC
Q 016681 332 HSL 334 (384)
Q Consensus 332 ~~~ 334 (384)
.+.
T Consensus 459 ~~~ 461 (472)
T 4g1t_A 459 SGS 461 (472)
T ss_dssp ---
T ss_pred cCC
Confidence 653
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=5.6e-20 Score=166.62 Aligned_cols=111 Identities=13% Similarity=0.201 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLAL---DKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
+|+++|.+|++.|++++|..+|..|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45555555555555555555554433 234455555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCh-HHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 312 SLCQCGKL-EEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 312 ~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
++++.|+. ++|.++|++|.+.|+.||..+|++++
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll 243 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence 55555542 44455555555555555555555444
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=161.60 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=103.6
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLR---KNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT 168 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (384)
-..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999987763 57889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681 169 FIGAYCEYGK-IEEANCLMQEMENAGLKPYDETFNLLIEGCAK 210 (384)
Q Consensus 169 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (384)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999887 47888999999999999999999988765544
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-16 Score=128.20 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----hHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS--AN----SFVY 166 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 166 (384)
...+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666666777777777777777776665 46666777777777777777777777776654211 11 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681 167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (384)
..+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++.+....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 777777777777777777777776643 332 3455567777787777777765433 455667777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
|++++|...++.+.+..+. +...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888777765433 56777777777777888888888887777664 344666777777777788888888777
Q ss_pred HHHhhC
Q 016681 327 KIMKSH 332 (384)
Q Consensus 327 ~~~~~~ 332 (384)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777653
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.5e-16 Score=124.92 Aligned_cols=200 Identities=11% Similarity=-0.004 Sum_probs=137.5
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
|+++..+..+...+.+.|++++|...|+..++..+ .+...+..+...+.+.|++++|+..|++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45677788888888888888888888888877643 367778888888888888888888888887765 5667778888
Q ss_pred HHHHHhh-----------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHH
Q 016681 100 ILRIIQE-----------ERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTT 168 (384)
Q Consensus 100 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 168 (384)
...+... |++++|+..+++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888887 7778888777777776433 56667777777777777777777777777765 46677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777776654 3445566666777777777777777766553
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=4.6e-16 Score=135.95 Aligned_cols=340 Identities=10% Similarity=-0.009 Sum_probs=222.8
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----C
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRN---DLVWRIYQHMLENIRYPNEATIRTLISALCKGG-----Q 73 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~ 73 (384)
|++++|++.|+...+.| ++.++..+...+...|+. ++|..+|+...+. ++..+..+...+...+ +
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 78999999999998876 455556666777778888 8999999988764 5555666666455554 7
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 016681 74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIE---EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVV 150 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 150 (384)
+++|...|++....+ .++ .+..|...|...+..+ .+.+.+......| +......+...|...+.++.+...
T Consensus 90 ~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 889999999998876 333 6667777777666544 4455555555555 345666677777777766555554
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CchHHHHHHHHH
Q 016681 151 YEEMLKRGFSANSFVYTTFIGAYCEYG---KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA----KRIEESLSYCEQ 223 (384)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~ 223 (384)
...+.+.-...++..+..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|...|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 433333222224447888888888888 8889999999988887 45555556666666554 688899999998
Q ss_pred HHhCCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 016681 224 MMSRKLLPSCSAFNEMIRR-L--CECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG-----EIQEVLKLYYEME 295 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~ 295 (384)
.. .+ +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++..
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 87 32 55566666666 3 46789999999999988875 6677777777776 45 8999999998877
Q ss_pred hcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhC
Q 016681 296 YKSISPTLPAYTSLISSLCQ----CGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSE 367 (384)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 367 (384)
.| +......|...|.. ..++++|..+|++..+.| +......|...|.. ..+.++|..+++...+.
T Consensus 315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 33 55666767777665 348899999999888876 34455566666653 45888899998888887
Q ss_pred CCC
Q 016681 368 GLK 370 (384)
Q Consensus 368 ~~~ 370 (384)
|..
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 753
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.4e-16 Score=127.33 Aligned_cols=224 Identities=12% Similarity=0.003 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCc----HHhH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPM----VIVN 96 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 96 (384)
...|..+...+...|++++|...|+...+.. .+...+..+...+...|++++|.+.+++...... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4456666666666777777777777666655 4566666666666666777777666666554320 011 3555
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 016681 97 TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY 176 (384)
Q Consensus 97 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (384)
..+...+...|++++|.+.+++..... |+. ..+.+.|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 556666666666666666666655532 221 223344555555555555544311 1333444455555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 177 GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML 256 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (384)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55555555555554433 223344444444444445555555544444443322 3344444444444444444444444
Q ss_pred HHHH
Q 016681 257 TLAL 260 (384)
Q Consensus 257 ~~~~ 260 (384)
+.+.
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1.4e-16 Score=124.96 Aligned_cols=209 Identities=15% Similarity=0.025 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016681 126 HDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLI 205 (384)
Q Consensus 126 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (384)
++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34455555555566666666666666665554222 45555555566666666666666666555543 22334455555
Q ss_pred HHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 016681 206 EGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQ 285 (384)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (384)
..+...+.. . .. .....|++++|...+++..+..+. +...+..+...+...|+++
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChH
Confidence 555544000 0 00 000115555555555555554322 4455555555555666666
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 286 EVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 286 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
+|...|++..+.. .+...+..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666555554 44555555555666666666666666665554332 4455555555666666666666555543
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.2e-15 Score=122.73 Aligned_cols=164 Identities=10% Similarity=-0.005 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 166 YTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 122234444444444444444444444444443221 23333333312222
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHh
Q 016681 246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKS-ISPT------LPAYTSLISSLCQ 315 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~ 315 (384)
.+++++|...++.+.+..+. +...+..+...+...++ +++|...++++.+.. -.|+ ..+|..+...+..
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 23445555555444443211 23444444444444444 444444444443221 0111 1244445555555
Q ss_pred cCChHHHHHHHHHHhhC
Q 016681 316 CGKLEEADKYFKIMKSH 332 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~~ 332 (384)
.|++++|...|+++.+.
T Consensus 234 ~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 234 NRDKVKADAAWKNILAL 250 (272)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 55555555555555554
No 41
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=5e-14 Score=132.39 Aligned_cols=307 Identities=14% Similarity=0.112 Sum_probs=227.0
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
+|.+++|..+|++.. ....+.+.++. ..+++++|.++.++. -+..+|..+..++...|++++|++.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 477888888888863 12333333333 667888888887754 2577888888999999999999998
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|.+. .|...|..++.++.+.|++++|.+.+...++... ++...+.++.+|++.+++++..... + .
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 8653 4677788888999999999999999988777653 3223334788888888887544332 2 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMI 240 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 240 (384)
++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 35667777888889999999999999884 36888889999999999999988877 2567888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--CC
Q 016681 241 RRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC--GK 318 (384)
Q Consensus 241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~ 318 (384)
.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-+...|+-+...+++. ++
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence 8888888888888766542 2366778899999999999999999998887654 44455676666666653 34
Q ss_pred hHHHHHHHHHHhhCCCC------CCHhHHHHHHHHHhccCCHHHHHH
Q 016681 319 LEEADKYFKIMKSHSLV------PGVDIYESLVGIHLEKGNKAKALH 359 (384)
Q Consensus 319 ~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~ 359 (384)
..++.++|..-.. +. -+...|..++..|.+.|+++.|..
T Consensus 1332 lmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4445555443222 21 246779999999999999999984
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=3e-15 Score=126.87 Aligned_cols=249 Identities=12% Similarity=0.078 Sum_probs=182.3
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN-LESALVVYEEMLKRGFSANSFVYTTFIG 171 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 171 (384)
...|..+...+...|++++|++.+++++..... +..+|+.+..++...|+ +++|...|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456777777777888888888888888876544 67777778888888885 88888888888776443 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChH
Q 016681 172 AYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE-CGNAK 250 (384)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 250 (384)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.++. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888887765 455677788888888888888888888888887655 67788888888887 55546
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC------
Q 016681 251 QA-----NGMLTLALDKGFSPNEITYSHLIGGYAKEG--EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG------ 317 (384)
Q Consensus 251 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 317 (384)
+| ...++......+. +...|..+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777776443 6778888888888777 578888888877 332 445667777888887764
Q ss_pred ---ChHHHHHHHHHH-hhCCCCCCHhHHHHHHHHHh
Q 016681 318 ---KLEEADKYFKIM-KSHSLVPGVDIYESLVGIHL 349 (384)
Q Consensus 318 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 349 (384)
.+++|.++++++ .+.++. ....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 258888888888 665432 3455665555443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=4.2e-15 Score=126.00 Aligned_cols=230 Identities=10% Similarity=0.046 Sum_probs=144.4
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ-LQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
..+|+.+...+.+.|++++|+..|+++++.... +...|..+..++...|+ +++|+..|+++...+ +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 455666666777777777777777777765332 56667777777777775 777777777777665 556677777777
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-YGKIE 180 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 180 (384)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|...++++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777766544 6667777777777777777777777777766433 56666667666666 44445
Q ss_pred HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHhcC--chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC------
Q 016681 181 EA-----NCLMQEMENAGLKPYDETFNLLIEGCAKAK--RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG------ 247 (384)
Q Consensus 181 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 247 (384)
+| +..+++..... +-+...|..+...+...| ++++|++.+.++ +.. ..+...+..+..++.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 55 35566655543 233445555555555555 456666666555 222 224455555555555542
Q ss_pred ---ChHHHHHHHHHH
Q 016681 248 ---NAKQANGMLTLA 259 (384)
Q Consensus 248 ---~~~~a~~~~~~~ 259 (384)
..++|..+++.+
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135566666555
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=2.7e-15 Score=122.20 Aligned_cols=234 Identities=9% Similarity=-0.013 Sum_probs=130.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAK 138 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 138 (384)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..| ...+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555666666666666655544 3344455555556666666666666666665532111 122355555666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH
Q 016681 139 VKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL 218 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 218 (384)
...|++++|.+.|++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554322 44566666666666666666666666655442 223344444442233334666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 016681 219 SYCEQMMSRKLLPSCSAFNEMIRRLCECGN---AKQANGMLTLALDKG-FSPN------EITYSHLIGGYAKEGEIQEVL 288 (384)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~a~ 288 (384)
..+++..+..+. +...+..+..++...++ +++|...++.+.+.. ..|+ ...|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666655432 34555555666666665 566666666655431 0122 245666677777777777777
Q ss_pred HHHHHHHhcC
Q 016681 289 KLYYEMEYKS 298 (384)
Q Consensus 289 ~~~~~~~~~~ 298 (384)
+.++++.+..
T Consensus 242 ~~~~~al~~~ 251 (272)
T 3u4t_A 242 AAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 7777777654
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=6.5e-16 Score=126.09 Aligned_cols=221 Identities=8% Similarity=-0.058 Sum_probs=105.0
Q ss_pred hcCChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHH
Q 016681 35 KSDRNDLVWRIYQHMLENIRY---PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEE 111 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 111 (384)
..|++++|+..|+.+.+.... .+..++..+...+...|++++|...|+++.... +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345556666666665554211 123445555555556666666666666555543 3445555555555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
|.+.++++.+.... +..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666655554322 34455555555555555555555555555432 2222233333333444555555555544444
Q ss_pred cCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 192 AGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP---SCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
.. +++...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...++.+.+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 32 2222222 23333444444455555555443322110 023333344444444444444444444443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=9.7e-15 Score=117.51 Aligned_cols=200 Identities=9% Similarity=-0.064 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681 59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK 138 (384)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 138 (384)
..+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555555666666666666666655543 444556666666666666666666666666554322 455566666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681 139 VKMRNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES 217 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (384)
...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665522222 34455556666666666666666666665543 23345566666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
...++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665433 24555666666666667777777766666654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=1.5e-14 Score=116.40 Aligned_cols=202 Identities=17% Similarity=0.040 Sum_probs=140.4
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA 172 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (384)
...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 456666777777777777777777777765432 566777777777777777777777777766532 256667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 016681 173 YCEYGKIEEANCLMQEMENAGLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ 251 (384)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 251 (384)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 3456666677777777777777777777665433 56667777777777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 252 ANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 252 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
|...++.+.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777766533 356667777777777777777777777776653
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=6e-14 Score=114.34 Aligned_cols=224 Identities=11% Similarity=-0.015 Sum_probs=144.1
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYT 167 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (384)
+..++..+...+...|++++|.+.|++..+.+ +..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45566667777777777777777777777633 45566666667777 777777777777776654 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 168 TFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 168 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777777 777777777777766654 34556666666666 667777777777666654 44555556
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 240 IRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK----EGEIQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 240 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 666666666666666542 34555566666666 666666666666666553 1445555556
Q ss_pred HHHh----cCChHHHHHHHHHHhhCC
Q 016681 312 SLCQ----CGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 312 ~~~~----~g~~~~a~~~~~~~~~~~ 333 (384)
.|.. .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6665 666666666666666544
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=1.8e-13 Score=128.67 Aligned_cols=315 Identities=14% Similarity=0.162 Sum_probs=241.6
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
+++++|.++.++. -++.+|..+..++.+.|++++|++.|.+. .|...|..++..+.+.|++++|.+.|
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6778888887754 36889999999999999999999999664 47889999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
....+.. +++...+.++.+|++.+++++...+ ++ .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 9887764 3333444589999999988854433 22 346667778999999999999999999885
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+ ..++..+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHH
Confidence 48999999999999999999999876 34488999999999999999988866542 336677889999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------ChhhHHHHHHHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE--GEIQEVLKLYYEMEYKSISP------TLPAYTSLISSL 313 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 313 (384)
.|.+.|.+++|..+++...... +-....|+-+...|++. ++..++.+.|..-. +++| +...|..++..|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHH
Confidence 9999999999999998888654 33556777777777753 34444555544322 2333 456799999999
Q ss_pred HhcCChHHHHHHH-------------HHHhhCCCCCCHhHHHHHHHHHhccC---------------CHHHHHHHHH
Q 016681 314 CQCGKLEEADKYF-------------KIMKSHSLVPGVDIYESLVGIHLEKG---------------NKAKALHLCE 362 (384)
Q Consensus 314 ~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~ 362 (384)
.+.|+++.|.... +.... -..++..|...+.-|...+ +++++.+++.
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 9999999988322 22221 1336777777777777666 6666666665
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=8.3e-14 Score=113.49 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCCHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMIHDTIAYS 132 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 132 (384)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444455555555555555555555555542 233444455555555 555555555555555543 444555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 016681 133 LIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE----YGKIEEANCLMQEMENAGLKPYDETFNLL 204 (384)
Q Consensus 133 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (384)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555542 44455555555555 555555555555555543 22344444
Q ss_pred HHHHHh----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 205 IEGCAK----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE----CGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 205 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
...|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 555555555555555442 33444555555555 555555555555555442 1344445555
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcC
Q 016681 277 GYAK----EGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 277 ~~~~----~~~~~~a~~~~~~~~~~~ 298 (384)
.|.. .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555555555555443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.8e-14 Score=113.69 Aligned_cols=202 Identities=9% Similarity=-0.030 Sum_probs=120.3
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
++..|..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|.+.++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 455666666777777777777777777666532 245666666666667777777777777666554 445566666666
Q ss_pred HHHhh-cchHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681 102 RIIQE-ERIEEGMVLLKRMLRKNMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI 179 (384)
Q Consensus 102 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (384)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666666522222 244555566666666666666666666655422 2455555666666666666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHh
Q 016681 180 EEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMS 226 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 226 (384)
++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655533113344455555555555666666655555544
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=2.8e-15 Score=119.90 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=88.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 44444444455555555555555554433 334445555555555555555555555555444321 3444455555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS 219 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (384)
..|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555544422 234444455555555555555555555554432 2233444444445555555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 016681 220 YCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK 262 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 262 (384)
.++++.+.... +..++..+..++...|++++|...++.+.+.
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55554443322 3444444555555555555555555555443
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1.1e-15 Score=124.79 Aligned_cols=245 Identities=10% Similarity=-0.000 Sum_probs=193.4
Q ss_pred cchHHHHHHHHHHHhcCC---CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGF---SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYV 78 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 78 (384)
|++++|++.|+.+.+... +.+..+|..+...+...|++++|...|+.+.+... .+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 789999999999988632 23577899999999999999999999999998743 37889999999999999999999
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 79 DMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
..|+++.... +.+..++..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999999876 6678899999999999999999999999999864 333344445556677899999999998887763
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhh
Q 016681 159 FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK---PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSA 235 (384)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (384)
+++...+ .++..+...++.++|...++........ .+...+..+...+...|++++|...+++..+..+. +
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N--- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T---
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h---
Confidence 3344444 4777788888999999999887653211 11467888999999999999999999999987532 2
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 016681 236 FNEMIRRLCECGNAKQANGML 256 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~ 256 (384)
+.....++...|++++|...+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 233355666777777777665
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=2.2e-15 Score=120.50 Aligned_cols=211 Identities=11% Similarity=0.067 Sum_probs=164.4
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI 100 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (384)
.++..|..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|...++++.... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 4667788888999999999999999999988643 368889999999999999999999999998876 66788999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE 180 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (384)
..+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999887543 678888899999999999999999999988743 36788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHH
Q 016681 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFN 237 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (384)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 9999999998765 455678899999999999999999999999887544 444443
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=3.2e-14 Score=112.20 Aligned_cols=200 Identities=9% Similarity=-0.028 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 3344455555555555555555555555443 334445555555555555555555555555544321 34444445555
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681 138 KVKM-RNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 138 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (384)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555554421111 13344444444555555555555554444432 122333444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
+|...+++..+..+..+...+..+...+...|+.+.+...++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444433221133333333333444444444444444433
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=7.4e-15 Score=126.86 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC
Q 016681 179 IEEANCLMQEMENA----GLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL-PS----CSAFNEMIRRLCECGN 248 (384)
Q Consensus 179 ~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 248 (384)
+++|...+++..+. +..| ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 56666555554321 1011 1234555666666667777776666665443111 11 2356666677777777
Q ss_pred hHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCC
Q 016681 249 AKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT----LPAYTSLISSLCQCGK 318 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~ 318 (384)
+++|...++...+.... ++ ..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 77777777666542110 11 445667777777778888888777776543100 11 3456667777778888
Q ss_pred hHHHHHHHHHHhhC----CCC-CCHhHHHHHHHHHhccCCH
Q 016681 319 LEEADKYFKIMKSH----SLV-PGVDIYESLVGIHLEKGNK 354 (384)
Q Consensus 319 ~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 354 (384)
+++|...+++..+. +.. ....++..+...+...|+.
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88888887776542 111 1234455666666666654
No 57
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.9e-14 Score=125.68 Aligned_cols=315 Identities=15% Similarity=0.056 Sum_probs=213.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL---QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
+...+.+.|++++|.++|+...+.| +...+..+...+...|+. ++|..+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5677788999999999999998875 334455566666777887 8999999998754 55666667664554
Q ss_pred hc-----chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 106 EE-----RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE---SALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 106 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
.+ ++++|+..|++..+.|.. ..+..+...|...+..+ .+.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 889999999999998743 36666777777665543 4555555555444 3556777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChH
Q 016681 178 KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAK---RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC----GNAK 250 (384)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 250 (384)
.++++......+.+.-...+...+..+...|.+.| +.++|+..|++..+.+.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555554333333222233347888888888899 999999999999998754 555556677777554 7999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----ChHHH
Q 016681 251 QANGMLTLALDKGFSPNEITYSHLIGG-Y--AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG-----KLEEA 322 (384)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a 322 (384)
+|...|+... .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 43 55666677666 4 46899999999999999887 5667777877777 55 99999
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCC
Q 016681 323 DKYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSEGL 369 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 369 (384)
...|++.. .| +...+..|...|.. ..++++|..+|++..+.|.
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 99999888 43 67778888877766 4499999999999988775
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=1.1e-14 Score=126.05 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcchHHHHHHHHHHHHc----C-CCCCHHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEERIEEGMVLLKRMLRK----N-MIHDTIAY 131 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 131 (384)
+..+...+...|++++|...|+++.+.. +.+. .++..+...+...|++++|...+++..+. + ......++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3444555666666666666666666543 2222 35556666666666666666666665442 1 01123445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCC
Q 016681 132 SLIVYAKVKMRNLESALVVYEEMLKR----G-FSANSFVYTTFIGAYCEYGK 178 (384)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~ 178 (384)
..+...+...|++++|...+++..+. + ......++..+...|...|+
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 55555566666666666666555432 1 01122344455555555555
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.4e-14 Score=125.07 Aligned_cols=300 Identities=12% Similarity=-0.019 Sum_probs=223.1
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCC-
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGK----RCS- 90 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 90 (384)
......+......+...|++++|...|+...+.... + ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 346667778888999999999999999999987432 3 357788889999999999999999886532 212
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hH
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HD----TIAYSLIVYAKVKMRN--------------------LE 145 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~ 145 (384)
....++..+...+...|++++|...+++....... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 23567888889999999999999999987753211 12 4477788888999999 99
Q ss_pred HHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchH
Q 016681 146 SALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 146 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 215 (384)
+|...+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998887543 111 1234678888999999999999999988865310 111 237788888999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHH
Q 016681 216 ESLSYCEQMMSRKLL-PS----CSAFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQ 285 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 285 (384)
+|...+++..+.... .+ ..++..+...+...|++++|...++...+.... ++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987653211 11 457788889999999999999999887753111 12 557788889999999999
Q ss_pred HHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCChH
Q 016681 286 EVLKLYYEMEYK----SI-SPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 286 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 320 (384)
+|...+++..+. +. .....++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999987654 11 112345566666777666553
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=1e-14 Score=126.26 Aligned_cols=237 Identities=12% Similarity=-0.022 Sum_probs=157.9
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCcH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNE----ATIRTLISALCKGGQLQTYVDMLDRIHGK----R-CSPMV 93 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 93 (384)
...+..+...+...|++++|...|+.+.+.... +. ..+..+...+...|++++|...+++.... + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556777889999999999999999987433 33 47888889999999999999999987653 1 13346
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKN-----MIHDTIAYSLIVYAKVKMRN-----------------LESALVVY 151 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~ 151 (384)
.++..+...+...|++++|...+++..... ......++..+...+...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999999877641 11134577788888999999 88888888
Q ss_pred HHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchHHHHHHH
Q 016681 152 EEMLKR----GF-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 152 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
++..+. +. ......+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 11 11234666777788888888888888877654310 011 124555556666666666666666
Q ss_pred HHHHhCCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 222 EQMMSRKLL-----PSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 222 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
++..+.... ....++..+...+...|++++|...++...
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 655432110 012334444444445555555555444443
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=8.8e-14 Score=106.10 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY 278 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (384)
..|..+...+.+.|++++|+..|++..+..+. +..++..+..++.+.|++++|...+......... +...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHHH
Confidence 44555555555555555555555555554433 4455555555555566666666655555554322 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681 279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 56666666666666655543 334455555666666666666666666666654433 4556666666666666666666
Q ss_pred HHHHHHHhCCCCCCccccc
Q 016681 359 HLCEEMVSEGLKPSTSYLC 377 (384)
Q Consensus 359 ~~~~~~~~~~~~p~~~~~~ 377 (384)
+.|++.++. .|+...|.
T Consensus 162 ~~~~~al~~--~p~~a~~~ 178 (184)
T 3vtx_A 162 KYFKKALEK--EEKKAKYE 178 (184)
T ss_dssp HHHHHHHHT--THHHHHHC
T ss_pred HHHHHHHhC--CccCHHHH
Confidence 666666553 34443333
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=6.4e-13 Score=110.16 Aligned_cols=218 Identities=10% Similarity=0.044 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhh-------cCCh-------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 016681 5 EVAFDVCRYLEQRGFSLSLISFNTLIHVVTK-------SDRN-------DLVWRIYQHMLENIRYPNEATIRTLISALCK 70 (384)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (384)
++|+.+|++..... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666655542 3355555555555442 3443 5555555555542111134455555555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHH
Q 016681 71 GGQLQTYVDMLDRIHGKRCSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-KMRNLESAL 148 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~ 148 (384)
.|++++|..+|++..+.. +.+.. +|..++..+.+.|++++|.++|++.++... ++...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555432 22222 455555555555555555555555554432 12223322221111 135555555
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKP--YDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
.+|+...+... .+...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555544321 134444455555555555555555555554431 222 12344444444444455555555554444
Q ss_pred h
Q 016681 226 S 226 (384)
Q Consensus 226 ~ 226 (384)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=2.7e-14 Score=119.87 Aligned_cols=134 Identities=19% Similarity=0.097 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----h
Q 016681 234 SAFNEMIRRLCECGNAKQANGMLTLALDKGFS-P----NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS-PT----L 303 (384)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 303 (384)
.++..+...+...|++++|...++...+.... + ....+..+...+...|++++|...+++..+.... ++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 35566666777777777777777766542100 1 1236677777788888888888888876543100 11 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 304 PAYTSLISSLCQCGKLEEADKYFKIMKSHS-----LVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 304 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
.++..+...+...|++++|...+++..+.. ......++..+...+...|++++|...+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 466777788888899999988888776521 1111346777888888999999999999888764
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=2.4e-14 Score=120.19 Aligned_cols=277 Identities=12% Similarity=-0.020 Sum_probs=147.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCcHH
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGK----RC-SPMVI 94 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 94 (384)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++.... +. +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34455566677788888888888887775322 2 345667777777778888887777765432 11 12245
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hHHHHH
Q 016681 95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HD----TIAYSLIVYAKVKMRN--------------------LESALV 149 (384)
Q Consensus 95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~--------------------~~~a~~ 149 (384)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 5666667777777777777777766542110 11 2245555566666666 566665
Q ss_pred HHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCchHHHHHHHHH
Q 016681 150 VYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPYDETFNLLIEGCAKAKRIEESLSYCEQ 223 (384)
Q Consensus 150 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 223 (384)
.+++..+. +.. .....+..+...+...|++++|...+++..+... .++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 218 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------- 218 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 55554321 100 0122344445555555555555555554432100 000
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 224 MMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
......++..+...+...|++++|...++...+.... ++ ..++..+...+...|++++|...+++..+..
T Consensus 219 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 219 -----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0001123444444555555555555555444321100 01 3445555666666666666666666554321
Q ss_pred ----C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 299 ----I-SPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 299 ----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
- .....++..+...+...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 011235556666777777777777777766653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.1e-12 Score=108.67 Aligned_cols=217 Identities=9% Similarity=0.051 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-------hcch-------HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 016681 75 QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ-------EERI-------EEGMVLLKRMLRK-NMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 139 (384)
++|...|++..... +.++..|..++..+.. .|++ ++|..+|++.+.. .. -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 34445555554433 4445555555444432 2332 4444444444442 11 13334444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCchHHH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSF-VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA-KAKRIEES 217 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 217 (384)
+.|++++|..+|+++.+.... +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555444442111 121 44444444444444444444444444332 112222221111111 13444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG-FSP--NEITYSHLIGGYAKEGEIQEVLKLYYEM 294 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (384)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444333221 33344444444444444444444444444321 121 2233444444444444444444444444
Q ss_pred Hh
Q 016681 295 EY 296 (384)
Q Consensus 295 ~~ 296 (384)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=1.2e-13 Score=121.54 Aligned_cols=215 Identities=7% Similarity=-0.050 Sum_probs=138.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL-QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLL 116 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 116 (384)
.+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666554432 23566666666777777777 77777777766654 445666777777777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------CCH
Q 016681 117 KRMLRKNMIHDTIAYSLIVYAKVKM---------RNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY--------GKI 179 (384)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 179 (384)
++..+.. |+...+..+...+... |++++|.+.+++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 7776653 4456666666666666 7777777777776665322 556666666666666 667
Q ss_pred HHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 180 EEANCLMQEMENAGLK---PYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGML 256 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 256 (384)
++|+..|++..+.. + .+...|..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777766643 2 34566666777777777777777777777665443 4556666666667777777666655
Q ss_pred HHH
Q 016681 257 TLA 259 (384)
Q Consensus 257 ~~~ 259 (384)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 433
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.62 E-value=1.8e-13 Score=117.30 Aligned_cols=129 Identities=12% Similarity=-0.045 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCChhh
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDK----GF-SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK----SISPTLPA 305 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 305 (384)
++..+..++...|++++|...+++..+. +. +....++..+...+.+.|++++|...+++..+. +-+.....
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555666666666655555441 11 223445566666666666666666666655432 11111222
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 306 YTSLISSLCQCGK---LEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 306 ~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
+..+...+...|+ +++|..++++. +..| ....+..+...|...|++++|...+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555566666666 55555555554 2112 234556677777777777777777777654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=5e-13 Score=114.55 Aligned_cols=294 Identities=9% Similarity=0.006 Sum_probs=212.0
Q ss_pred HhhcCChhHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCcHHh
Q 016681 33 VTKSDRNDLVWRIYQHMLEN--IRYPNEA--TIRTLISA--LCKGGQLQTYV-----------DMLDRIHGKRCSPMVIV 95 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 95 (384)
+.+.+++++|..+++.+.+. ....|.. .|-.++.. ..-.+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 46789999999999998765 2333443 33444332 22334555555 7777776532 22222
Q ss_pred HHH------HHHHHHhhcchHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C--
Q 016681 96 NTS------LILRIIQEERIEEGMVLLKRMLRK----NMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-A-- 161 (384)
Q Consensus 96 ~~~------l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 161 (384)
+.. ....+...|++++|...+++..+. +..+ ...++..+...+...|+++.|...+++..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222 556677899999999999999874 1111 3467888889999999999999999998764111 1
Q ss_pred ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCchHHHHHHHHHHHh-----CC
Q 016681 162 ---NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPY----DETFNLLIEGCAKAKRIEESLSYCEQMMS-----RK 228 (384)
Q Consensus 162 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 228 (384)
...+++.+..+|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 135678888999999999999999998875321 111 24788888999999999999999999877 33
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 016681 229 LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG----FSPNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISP 301 (384)
Q Consensus 229 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~ 301 (384)
.+....++..+...+...|++++|...++...+.. .+.....+..+...+...|+ .++|..++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 13346778899999999999999999999887531 11122335667788888898 77777777765 2222
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 302 -TLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 302 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344677788999999999999999998875
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=6.6e-13 Score=101.19 Aligned_cols=166 Identities=15% Similarity=0.063 Sum_probs=102.2
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
++..|..+...+.+.|++++|++.|++.++..+. +..++..+...+.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556666666666666666666666666665332 45566666666666666666666666665554 444555556666
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (384)
.+...++++.|.+.+.+....... +...+..+...+.+.|++++|.+.|++..+... .+...+..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666654332 455566666666666666666666666665532 245556666666666666666
Q ss_pred HHHHHHHHHH
Q 016681 182 ANCLMQEMEN 191 (384)
Q Consensus 182 a~~~~~~~~~ 191 (384)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.7e-13 Score=120.55 Aligned_cols=214 Identities=11% Similarity=-0.027 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL-ESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
++++++.+++...... .+...+..+...+...|++ ++|.+.|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444544433321 2445555555555555555 5555555555554221 34555555555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc---------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChH
Q 016681 188 EMENAGLKPYDETFNLLIEGCAKA---------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC--------GNAK 250 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 250 (384)
+..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..++... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 555432 4445555555555555 5666666666665554433 455555555555555 5566
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 251 QANGMLTLALDKGFS--PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 251 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
+|...|+...+..+. -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666554220 255566666666666666666666666665543 23344555555666666666666554443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=5.1e-14 Score=116.91 Aligned_cols=243 Identities=17% Similarity=0.162 Sum_probs=122.0
Q ss_pred cHHhHHHHHHHHHhhcchHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 016681 92 MVIVNTSLILRIIQEERIEEGMVLLKRMLRK-------NMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR------G 158 (384)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 158 (384)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566677777777777777777777776652 12223455666666677777777777777666543 1
Q ss_pred C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681 159 F-SANSFVYTTFIGAYCEYGKIEEANCLMQEMENA------GLKP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL 230 (384)
Q Consensus 159 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (384)
. +.....+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 1 112345555666666666666666666655442 1111 12234444444444455555554444443320
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC
Q 016681 231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSP-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK-------SIS 300 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 300 (384)
.+. +..| ...++..+...+...|++++|...++++.+. ...
T Consensus 184 -----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 184 -----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 1011 2234455555555556666666555555432 111
Q ss_pred CChh-------hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 301 PTLP-------AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 301 ~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
+... .+..+...+...+.+.++...++....... ....++..+..+|...|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 112222233344555566666666554322 2456677888888888888888888888765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=7.6e-14 Score=115.88 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=124.2
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN-------IRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK------ 87 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 87 (384)
.+..++..+...+...|++++|...++.+.+. .......++..+...+...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35677888888899999999999999888763 12223556778888888899999999888887653
Q ss_pred C-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 016681 88 R-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK------NMIH-DTIAYSLIVYAKVKMRNLESALVVYEEMLKR-- 157 (384)
Q Consensus 88 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 157 (384)
+ .+....++..+...+...|++++|.+.+++..+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1334567778888888888888888888887754 2112 3455677777888888888888888877654
Q ss_pred ----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 158 ----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 158 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
+..| ...++..+..++...|++++|...++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 344567777788888888888888877764
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=2.5e-10 Score=103.40 Aligned_cols=357 Identities=7% Similarity=-0.004 Sum_probs=200.5
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHH
Q 016681 7 AFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ---LQTYVDMLDR 83 (384)
Q Consensus 7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 83 (384)
-+..|+...... +-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|++
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 344455555544 458888888888888888888888888888876 33467778888877777777 8888888888
Q ss_pred HHhCC-CCCcHHhHHHHHHHHHhhcch--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHHh---------cC
Q 016681 84 IHGKR-CSPMVIVNTSLILRIIQEERI--------EEGMVLLKRMLR-KNM-IH-DTIAYSLIVYAKVK---------MR 142 (384)
Q Consensus 84 ~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~ll~~~~~---------~~ 142 (384)
..... .+|++..|...+....+.++. +.+.++|+..+. -|. .| +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 87654 137777888777665554443 334466666554 344 34 34566665544321 23
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-------------cCCHHHH---------------------------
Q 016681 143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-------------YGKIEEA--------------------------- 182 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a--------------------------- 182 (384)
+.+.+..+|+.+.......-..+|......-.. ..+++.|
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 455566666665542111111122111100000 0011111
Q ss_pred ----------------------------------------HHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHH-HHH
Q 016681 183 ----------------------------------------NCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESL-SYC 221 (384)
Q Consensus 183 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~ 221 (384)
..+|++....- +-+...|...+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 22222222211 112233333444444556666675 777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHh
Q 016681 222 EQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF---------SPN------------EITYSHLIGGYAK 280 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~ 280 (384)
++..... +.+...|-..+....+.|++++|..+|+.+.+... .|+ ...|...+....+
T Consensus 368 ~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 7776543 23455566666667777777777777777665310 121 2356666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHH
Q 016681 281 EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALH 359 (384)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 359 (384)
.|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+...+. ..-+...|...+......|+.+.|..
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777776651111223333333333333 3477777777777664 22255566666666667777777777
Q ss_pred HHHHHHhCC
Q 016681 360 LCEEMVSEG 368 (384)
Q Consensus 360 ~~~~~~~~~ 368 (384)
+|++.+...
T Consensus 526 lferal~~~ 534 (679)
T 4e6h_A 526 LFESSIDKI 534 (679)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHHHhc
Confidence 777776654
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.55 E-value=1.3e-10 Score=105.30 Aligned_cols=219 Identities=7% Similarity=-0.080 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 147 ALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN-CLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 147 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
+..+|+++... ++-+...|-..+..+...|+.++|. ++|++..... +.+...|...+....+.|+++.|..+|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555554 2335666777777777888988996 9999988643 4455567778888888999999999999987
Q ss_pred hCC---------CCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CC
Q 016681 226 SRK---------LLPS------------CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GE 283 (384)
Q Consensus 226 ~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 283 (384)
... ..|+ ..+|...+....+.|+.+.|..+|..+.+....+....|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 641 0132 3467778888888899999999999998761122334444333333344 45
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHhHHHHHHHHHhccCCHHHHHHHH
Q 016681 284 IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP--GVDIYESLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 361 (384)
.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.......+ ....|..++..-.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999887 34456667788888888999999999999999865422 3467888888888999999999999
Q ss_pred HHHHhCC
Q 016681 362 EEMVSEG 368 (384)
Q Consensus 362 ~~~~~~~ 368 (384)
+++.+.-
T Consensus 565 ~R~~~~~ 571 (679)
T 4e6h_A 565 KRFFEKF 571 (679)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998753
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.6e-11 Score=104.73 Aligned_cols=300 Identities=9% Similarity=0.037 Sum_probs=204.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC-CCH----HHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV----IVNTSLILRIIQEERIEEGMVLLKRMLRKNMI-HDT----IAY 131 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~ 131 (384)
.......+...|++++|...+++........+. ..++.+...+...|++++|.+.+++....... .+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344455667789999999999998776422222 25566777888899999999999988753211 122 235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--Chhh
Q 016681 132 SLIVYAKVKMRNLESALVVYEEMLKR----GFS--A-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK--P--YDET 200 (384)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 200 (384)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888999999999999888653 221 2 2345666788889999999999999988764321 1 1245
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC-hhhHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHH
Q 016681 201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS-CSAFN-----EMIRRLCECGNAKQANGMLTLALDKGFSPN---EITY 271 (384)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 271 (384)
+..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66777888899999999999998865422211 11222 233447789999999999988876432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 016681 272 SHLIGGYAKEGEIQEVLKLYYEMEYK----SISPTL-PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVG 346 (384)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 346 (384)
..+...+...|++++|...+++.... +..++. .++..+..++...|+.++|...+++...... . ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 67778888899999999999887543 211222 2556667788889999999999998887321 0 11223
Q ss_pred HHhccCCHHHHHHHHHHHHhCC
Q 016681 347 IHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 347 ~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
.+...| +....+++.+....
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHcc--HHHHHHHHHHHhCC
Confidence 445555 56777888777653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=9.4e-12 Score=106.38 Aligned_cols=227 Identities=10% Similarity=-0.008 Sum_probs=137.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-ChhhHHHH
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGF-SA----NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG--L---KP-YDETFNLL 204 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~~~~~~~l 204 (384)
..+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++..+.. . .+ ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344566777777777766654310 01 23455566666777777777777766654321 0 11 12455666
Q ss_pred HHHHHhcCchHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCCHHHHHHH
Q 016681 205 IEGCAKAKRIEESLSYCEQMMSR----KL-LPSCSAFNEMIRRLCECGNAKQANGMLTLALD-----KGFSPNEITYSHL 274 (384)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 274 (384)
...|...|++++|...+.+..+. +. .....++..+..++...|++++|...+++..+ ..+. ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 66677777777777777665542 11 11134566677777777888888877777765 3222 35667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCC-CHhHHHHHHH
Q 016681 275 IGGYAKEGEIQEVLKLYYEMEYKSIS----PTLPAYTSLISSLCQCGK---LEEADKYFKIMKSHSLVP-GVDIYESLVG 346 (384)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 346 (384)
...+.+.|++++|...+++..+..-. .....+..+...+...++ +.+|...+++. +..| ....+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 77888888888888888877654211 112234445555666666 66666666652 2222 2345667778
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 016681 347 IHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 347 ~~~~~g~~~~a~~~~~~~~~ 366 (384)
.|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888887754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-11 Score=105.62 Aligned_cols=308 Identities=9% Similarity=0.016 Sum_probs=211.1
Q ss_pred CCchhhHHHHHHHH--hhcCChhHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH---------HHHH
Q 016681 20 SLSLISFNTLIHVV--TKSDRNDLVWRIYQHMLEN--IRYPNEA--TIRTLISA--LCKGGQLQTYV---------DMLD 82 (384)
Q Consensus 20 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~~ 82 (384)
.|+...-+.+-.-| ...+++++|.++++.+.+. ....|.. .|-.++.. ..-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555555555 7889999999999988664 2323433 33333332 11112222233 6666
Q ss_pred HHHhCCCCCc--H--HhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 83 RIHGKRCSPM--V--IVNTSLILRIIQEERIEEGMVLLKRMLRKNM-IH----DTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 83 ~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
.+.....+.+ . ..+......+...|++++|+..+++..+... .+ ...++..+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6654321111 1 1233344566789999999999999876421 12 245677888899999999999999998
Q ss_pred HHHcC----C-C-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCchHHHHHHHH
Q 016681 154 MLKRG----F-S-ANSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GLKP-YDETFNLLIEGCAKAKRIEESLSYCE 222 (384)
Q Consensus 154 ~~~~~----~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 222 (384)
..+.. . . ....+++.+..+|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87531 1 1 12456788899999999999999999887653 1111 13467788889999999999999999
Q ss_pred HHHh-----CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 016681 223 QMMS-----RKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGF----SPNEITYSHLIGGYAKEGE---IQEVLKL 290 (384)
Q Consensus 223 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~ 290 (384)
+..+ ..+. ...++..+...+.+.|++++|...++...+... +.....+..+...+...++ ..+|...
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9877 4443 377888899999999999999999999886422 2223445666666777788 7777777
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 291 YYEMEYKSISP-TLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
+++. +..| ....+..+...|...|++++|...|++..+
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7662 2222 234567788999999999999999998765
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.51 E-value=3.4e-11 Score=102.69 Aligned_cols=301 Identities=9% Similarity=0.009 Sum_probs=211.4
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCC---CCc--HHh
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEA----TIRTLISALCKGGQLQTYVDMLDRIHGKRC---SPM--VIV 95 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~ 95 (384)
.+......+...|++++|...++.........+.. ++..+...+...|++++|...+++...... .+. ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778999999999999988764333332 456677788889999999999998764310 111 234
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChH
Q 016681 96 NTSLILRIIQEERIEEGMVLLKRMLRK----NMI--H-DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA----NSF 164 (384)
Q Consensus 96 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 164 (384)
+..+...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778889999999999999988753 221 2 23456667888999999999999999987653221 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCchHHHHHHHHHHHhCCCCCC---hhh
Q 016681 165 VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD-ETFN-----LLIEGCAKAKRIEESLSYCEQMMSRKLLPS---CSA 235 (384)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 235 (384)
.+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777888999999999999999988754212211 1222 233447789999999999998876543221 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDK----GFSPNE-ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI 310 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (384)
+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..... +.. ..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~----g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRT----GFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH----CCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--ccc----cHH
Confidence 567788899999999999999887643 222222 356667788889999999999999998763 111 122
Q ss_pred HHHHhcCChHHHHHHHHHHhhCC
Q 016681 311 SSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
..+...| +....+++.+....
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHcc--HHHHHHHHHHHhCC
Confidence 3344444 56667777776653
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=8.3e-12 Score=94.98 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681 199 ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGY 278 (384)
Q Consensus 199 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (384)
..+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 34555566666677777777777766655432 566677777777777777777777777776532 3566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681 279 AKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777664 445667777777888888888888888887775433 5677778888888888888888
Q ss_pred HHHHHHHhC
Q 016681 359 HLCEEMVSE 367 (384)
Q Consensus 359 ~~~~~~~~~ 367 (384)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887754
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=3.9e-12 Score=116.37 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=150.4
Q ss_pred CCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHH
Q 016681 20 SLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSL 99 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 99 (384)
+-++.+|+.+...+.+.|++++|++.|++.++.... +..++..+..++.+.|++++|+..|++..+.+ +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 346788999999999999999999999999987432 68899999999999999999999999999876 6678999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Q 016681 100 ILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKI 179 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (384)
..++...|++++|++.|++.++.... +..+|..+..++.+.|++++|.+.|++..+.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999987644 7889999999999999999999999999987443 678899999999999999
Q ss_pred HHHHHHHHHHHH
Q 016681 180 EEANCLMQEMEN 191 (384)
Q Consensus 180 ~~a~~~~~~~~~ 191 (384)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1.3e-11 Score=93.85 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
|..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 44444444445555555555444443211 234444444444444444555444444444332 3334444444444444
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCL 185 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 185 (384)
.|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444321 1333444444444444444444444444443321 1333444444444444444444444
Q ss_pred HHHH
Q 016681 186 MQEM 189 (384)
Q Consensus 186 ~~~~ 189 (384)
++..
T Consensus 167 ~~~~ 170 (186)
T 3as5_A 167 FKKA 170 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=5.5e-12 Score=115.40 Aligned_cols=165 Identities=18% Similarity=0.115 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 016681 163 SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRR 242 (384)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (384)
...++.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+.++. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666666666666666666543 233455666666666666666666666666655433 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHH
Q 016681 243 LCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEA 322 (384)
Q Consensus 243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 322 (384)
+...|++++|...|++..+.... +...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666654332 45566666666666666666666666665543 22345555566666666666666
Q ss_pred HHHHHHHhh
Q 016681 323 DKYFKIMKS 331 (384)
Q Consensus 323 ~~~~~~~~~ 331 (384)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=4.3e-11 Score=94.53 Aligned_cols=206 Identities=8% Similarity=-0.006 Sum_probs=158.9
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLI 100 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 100 (384)
.|+..+......+...|++++|...|+...+....++...+..+...+...|++++|+..|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788888999999999999999999999987654688888889999999999999999999999876 66788999999
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHH
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIHDT-------IAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN---SFVYTTFI 170 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 170 (384)
..+...|++++|++.+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999987543 44 45777888889999999999999999876 333 45666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 171 GAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
.+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+..+. +..+...+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 7776544 33445554443 23334444433 33456789999999999887543 44444433
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=5.3e-11 Score=94.00 Aligned_cols=195 Identities=13% Similarity=0.018 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016681 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE 206 (384)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (384)
|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5567777777888888888888888888776543566677777888888888888888888887754 334567777778
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRKLLPSC-------SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPN---EITYSHLIG 276 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 276 (384)
.+...|++++|...+++..+..+. +. ..|..+...+...|++++|...++.+.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 888888888888888887776543 34 34666667777778888888888777765 333 345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 277 GYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
.|...| ...++++...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 654333 33444444443 22333333332 223455777777777777654
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.43 E-value=4.5e-12 Score=103.51 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=156.3
Q ss_pred cchHHHHHHHHHHHh-------cCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc------CCCC-CHHHHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQ-------RGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN------IRYP-NEATIRTLISA 67 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~ 67 (384)
|++++|+..|++..+ ...+....++..+...+...|++++|...++...+. +..| ...++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 445555555555433 333446778999999999999999999999998865 2122 35578889999
Q ss_pred HHccCChHHHHHHHHHHHhC------C-CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc------CCCC-CHHHHHH
Q 016681 68 LCKGGQLQTYVDMLDRIHGK------R-CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK------NMIH-DTIAYSL 133 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ 133 (384)
+...|++++|.+.+++.... . .+....++..+...+...|++++|.+.+++..+. +..| ...++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999988754 1 1334678888999999999999999999998775 1122 3567888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-------CCCC-ChHHHHHHHHHHHhcCCHHHH------HHHHHHHHHcCCCCChh
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKR-------GFSA-NSFVYTTFIGAYCEYGKIEEA------NCLMQEMENAGLKPYDE 199 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a------~~~~~~~~~~~~~~~~~ 199 (384)
+...+...|++++|...+++..+. ...+ ....+..+...+...+....+ ...++.... ..+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 899999999999999999998763 1122 223333333333333332222 222221111 1122345
Q ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 200 TFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 200 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
++..+...|...|++++|...+++..+.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999988754
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.39 E-value=4.4e-09 Score=92.45 Aligned_cols=345 Identities=8% Similarity=-0.025 Sum_probs=220.3
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCC-hhHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHH----ccCCh
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDR-NDLVWRIYQHMLEN-IRY-PNEATIRTLISALC----KGGQL 74 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~~~~ 74 (384)
|+++.+..+|+..... .|++..|...+....+.+. .+....+|+..+.. |.. ++...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 5788999999999885 4799999999988877763 46677888888775 433 36788888887654 24678
Q ss_pred HHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-------------hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 75 QTYVDMLDRIHGKRCSPMVIVNTSLILRII-------------QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
+.+..+|++........-...|......-. ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999999987432111233332222111 1122334444444443211011334555554432221
Q ss_pred C--C-----hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCch
Q 016681 142 R--N-----LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRI 214 (384)
Q Consensus 142 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 214 (384)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... +.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 345677899888763 446788888899999999999999999999887 33332222 22222111
Q ss_pred HHHHHHHHHHHhCC------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-c
Q 016681 215 EESLSYCEQMMSRK------------LLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK-E 281 (384)
Q Consensus 215 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 281 (384)
++. ++.+.+.- .......|...+....+.++.+.|..+|+.+ .. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222110 0111245666677777788899999999999 32 22344555433322222 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 016681 282 GEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 361 (384)
++.+.|..+|+...+.. +-++..+...++.....|+.+.|..+|+++.+ ....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36999999999988763 23345566677777889999999999999732 5778888888878889999999999
Q ss_pred HHHHh
Q 016681 362 EEMVS 366 (384)
Q Consensus 362 ~~~~~ 366 (384)
++..+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=1.5e-11 Score=100.40 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 016681 130 AYSLIVYAKVKMRNLESALVVYEEMLKR------G-FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENA------GLKP 196 (384)
Q Consensus 130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 196 (384)
++..+...+...|++++|.+.+++..+. . .+.....+..+...+...|++++|...+++..+. +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444444444444444444332 0 0112334444445555555555555555544432 0011
Q ss_pred -ChhhHHHHHHHHHhcCchHHHHHHHHHHH
Q 016681 197 -YDETFNLLIEGCAKAKRIEESLSYCEQMM 225 (384)
Q Consensus 197 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 225 (384)
...++..+...+...|++++|...+++..
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12334444455555555555555555443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=2.8e-10 Score=93.45 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhc-CchHHHHHHHHHHHhCCCCC-C----h
Q 016681 165 VYTTFIGAYCEYGKIEEANCLMQEMENAGL---KP--YDETFNLLIEGCAKA-KRIEESLSYCEQMMSRKLLP-S----C 233 (384)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 233 (384)
+|+.+..+|...|++++|+..+++..+... .+ -..++..+...|... |++++|+..+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444455555555555555555544433110 00 012444455555553 66666666555554421110 0 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---
Q 016681 234 SAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNE------ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP--- 304 (384)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 304 (384)
.++..+...+...|++++|...++...+..+.... ..|..+..++...|++++|...|++..+. .|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 34555566666666666666666666654322111 13455555666666666666666665543 12211
Q ss_pred ---hHHHHHHHHH--hcCChHHHHHHHHHHhh
Q 016681 305 ---AYTSLISSLC--QCGKLEEADKYFKIMKS 331 (384)
Q Consensus 305 ---~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 331 (384)
.+..++.++. ..+++++|...|+.+..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 2233344443 33456666666655443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=1.2e-09 Score=88.10 Aligned_cols=246 Identities=9% Similarity=-0.014 Sum_probs=147.1
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE 145 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 145 (384)
+-..-.|.+..++.-..++ ...........+.+++...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3344568888777733322 2122223333455777777776642 12334443444443333 222
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCchHHHHHHHHHH
Q 016681 146 SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KPYDETFNLLIEGCAKAKRIEESLSYCEQM 224 (384)
Q Consensus 146 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 224 (384)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+- .-+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566676666544 34555556777788888888888888887766542 134566777778888888888888888888
Q ss_pred HhCCC---CCChhhHHHHHHHH--HhcC--ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 225 MSRKL---LPSCSAFNEMIRRL--CECG--NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 225 ~~~~~---~~~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
.+... ..+..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76531 00244555555552 2223 788888888887665 344333344444777888888888888766543
Q ss_pred -----C----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 298 -----S----ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 298 -----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
+ -+-++.++..+|......|+ +|.++++++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 0 02355566455555555665 7778888887754
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=2.6e-09 Score=86.18 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=165.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcch
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 109 (384)
++-..-.|++..++.- ..+............+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 4556678888888773 33222222333444456777777876642 11234443444444333 322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF-SANSFVYTTFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (384)
|+..++++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677888777665 44566667788888899999999999998877654 23667778888999999999999999999
Q ss_pred HHHcCCCC-----ChhhHHHHHHHHHh--cC--chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 189 MENAGLKP-----YDETFNLLIEGCAK--AK--RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 189 ~~~~~~~~-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
|.+. .| +..+...+..++.. .| +..+|..+|+++.+.. |+...-..++.++.+.|++++|+..++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9774 45 34566666655332 23 8899999999987653 34333344444888999999999999876
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh
Q 016681 260 LDKG---------FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP 304 (384)
Q Consensus 260 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 304 (384)
.+.. -+-++.+...++......|+ +|.++++++.+.. |+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 6531 02366677566655556676 8889999998764 5544
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=2.1e-08 Score=81.75 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=122.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH----Hhh---cc
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG--QLQTYVDMLDRIHGKRCSPMVIVNTSLILRI----IQE---ER 108 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 108 (384)
..++|+.+++.++..++. +...|+.--..+...| +++++++.++.+...+ +.+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 335788888877775432 4556777667777777 7788888888777765 55666666655554 334 56
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC------HH
Q 016681 109 IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE--SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK------IE 180 (384)
Q Consensus 109 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 180 (384)
+++++++++++.+...+ +..+|+.-...+.+.+.++ ++++.++++.+..+. |...|+.-.......+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 67777777777766544 6666666666666666666 666666666665443 55556555555544444 55
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH-HHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 181 EANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE-ESLSYCEQMMSRK--LLPSCSAFNEMIRRLCECGNAKQANGMLT 257 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 257 (384)
++++.++.+.... +-|...|+-.-..+.+.|+.. .+..+..++.+.+ ...++..+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5555555555443 334444544444444444322 2333333333221 01234444444444444444444444444
Q ss_pred HHH
Q 016681 258 LAL 260 (384)
Q Consensus 258 ~~~ 260 (384)
.+.
T Consensus 283 ~l~ 285 (306)
T 3dra_A 283 LLK 285 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=6.5e-10 Score=79.41 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
+|..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 344455555555555555555555554422 234445555555555555555555555554443 333444444555555
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016681 105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK 156 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 156 (384)
..|++++|.+.++++...... +...+..+...+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555443221 334444444444455555555555444443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=6.3e-10 Score=79.49 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
.+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345556666666777777777766665432 255666666666777777777777777766654 334556666677777
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 315 QCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 315 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
..|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777777664332 4566667777777777777777777777653
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=6.1e-10 Score=91.38 Aligned_cols=235 Identities=11% Similarity=0.018 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 016681 111 EGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM--R-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQ 187 (384)
Q Consensus 111 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (384)
+|.+++.+..+.- +++...| .+ .+. + ++++|...|++. ...|...|++++|.+.|+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4666777766652 2222222 22 232 2 488888887776 346778999999999998
Q ss_pred HHHHc----CCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhc-CChHHHHHHH
Q 016681 188 EMENA----GLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-S----CSAFNEMIRRLCEC-GNAKQANGML 256 (384)
Q Consensus 188 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~ 256 (384)
+..+. +-+++ ..+|+.+...|.+.|++++|+..+++..+..... + ..++..+...|... |++++|...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 87653 32222 4678899999999999999999999886642111 1 35788889999996 9999999999
Q ss_pred HHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChHHHHHH
Q 016681 257 TLALDKGFSP-N----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP------AYTSLISSLCQCGKLEEADKY 325 (384)
Q Consensus 257 ~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~ 325 (384)
++..+..... + ..++..+...+.+.|++++|...|++..+........ .|..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987642111 1 3568889999999999999999999998864322221 467778889999999999999
Q ss_pred HHHHhhCCCCC-C---HhHHHHHHHHHh--ccCCHHHHHHHHHHHHh
Q 016681 326 FKIMKSHSLVP-G---VDIYESLVGIHL--EKGNKAKALHLCEEMVS 366 (384)
Q Consensus 326 ~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 366 (384)
|++..+..+.. + ...+..++.++. ..+++++|...|+++..
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99988743221 1 123445566664 45678888888876643
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=3e-08 Score=80.79 Aligned_cols=219 Identities=8% Similarity=0.010 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 016681 72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE--RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK----VKM---R 142 (384)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~ 142 (384)
...++|+.+++.+...+ |.+..+|+.--..+...+ +++++++.++.+....++ +..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 34467888888877776 666777777777777777 788888888888776544 455555444444 344 5
Q ss_pred ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc------h
Q 016681 143 NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIE--EANCLMQEMENAGLKPYDETFNLLIEGCAKAKR------I 214 (384)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 214 (384)
++++++++++.+.+...+ +...|+.-.-++.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 677777777777766433 6666666666666667666 7777777776655 3444555554444444444 5
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQ-ANGMLTLALDKG--FSPNEITYSHLIGGYAKEGEIQEVLKLY 291 (384)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (384)
+++++.++.++...+. |...|+..-..+.+.|+... +..+...+.+.+ -..+...+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555555555444 55555555555555554222 233333333221 0123444444445554445555555555
Q ss_pred HHHH
Q 016681 292 YEME 295 (384)
Q Consensus 292 ~~~~ 295 (384)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=1.7e-09 Score=87.20 Aligned_cols=188 Identities=8% Similarity=-0.010 Sum_probs=103.9
Q ss_pred CchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCcHHh
Q 016681 21 LSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN---EATIRTLISALCKGGQLQTYVDMLDRIHGKRC--SPMVIV 95 (384)
Q Consensus 21 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 95 (384)
.++..+-.....+.+.|++++|...|+.+.+..+. + ...+..+..++.+.|++++|+..|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555666666677777777777777777665322 2 45666666777777777777777777665431 122445
Q ss_pred HHHHHHHHHh--------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH
Q 016681 96 NTSLILRIIQ--------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT 167 (384)
Q Consensus 96 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 167 (384)
+..+..++.. .|++++|...|+++++..+. +......+.. +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5556666666 67777777777776665322 2222211100 0000000 011134
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhc----------CchHHHHHHHHHHHhCC
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAGLK-P-YDETFNLLIEGCAKA----------KRIEESLSYCEQMMSRK 228 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 228 (384)
.+...|.+.|++++|+..|+.+.+.... + ....+..+..+|... |++++|...++++.+..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 4556666777777777777776654311 0 123455555555544 66666777776666653
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1.5e-10 Score=106.42 Aligned_cols=150 Identities=10% Similarity=-0.079 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHH--------hcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 2 RLFEVAFDVCRYLE--------QRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 2 ~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
|++++|++.++... +.. +.+...+..+..++.+.|++++|+..|++..+... .+...|..+..++...|+
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCC
Confidence 44455555555554 221 22344444555555555555555555555544322 134444445555555555
Q ss_pred hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016681 74 LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 153 (384)
+++|+..|++..+.+ +.+...+..+..++.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|.+.|++
T Consensus 483 ~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 483 YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555555555554443 3344444455555555555555 5555555444322 344444444555555555555555544
Q ss_pred HHH
Q 016681 154 MLK 156 (384)
Q Consensus 154 ~~~ 156 (384)
..+
T Consensus 560 al~ 562 (681)
T 2pzi_A 560 VPP 562 (681)
T ss_dssp SCT
T ss_pred hcc
Confidence 443
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=2.4e-09 Score=86.35 Aligned_cols=173 Identities=10% Similarity=0.037 Sum_probs=122.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHc-----
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLS---LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCK----- 70 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~----- 70 (384)
.|++++|++.|+.+.+.. +.+ ..++..+..++.+.|++++|+..|+...+..+. |. ...+..+..++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp TTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred hCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 489999999999998874 224 678888999999999999999999999986432 22 4567778888888
Q ss_pred ---cCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 016681 71 ---GGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESA 147 (384)
Q Consensus 71 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 147 (384)
.|++++|+..|+++.... +.+......+.......+.. ...+..+...+.+.|++++|
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~------------------~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKL------------------ARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHccCHHHH
Confidence 999999999999998765 33333332221111111110 11245566778888888888
Q ss_pred HHHHHHHHHcCCCC--ChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 016681 148 LVVYEEMLKRGFSA--NSFVYTTFIGAYCEY----------GKIEEANCLMQEMENAG 193 (384)
Q Consensus 148 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~ 193 (384)
...|+.+.+..... ....+..+..+|... |++++|...|+.+.+..
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88888887753221 234566677777755 78888888888887753
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=8.2e-10 Score=85.66 Aligned_cols=97 Identities=7% Similarity=-0.009 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHhC
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRT----------------LISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
..+......+.+.|++++|+..|+...+..+. +...+.. +...+.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444455666777777777777777764221 2333333 344444444444444444444443
Q ss_pred CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 88 RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
. |.+...+..+...+...|++++|...|++.++.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3 333444444444444444444444444444443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=3.3e-10 Score=104.12 Aligned_cols=171 Identities=11% Similarity=-0.069 Sum_probs=86.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 016681 174 CEYGKIEEANCLMQEME--------NAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCE 245 (384)
Q Consensus 174 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (384)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...+++..+.++. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44555555555555554 221 223344555555555555555555555555554332 44455555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 016681 246 CGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKY 325 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 325 (384)
.|++++|...|+++.+..+. +...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555554322 44455555555555555555 55555555443 23344555555555555555555555
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHhc
Q 016681 326 FKIMKSHSLVPGVDIYESLVGIHLE 350 (384)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (384)
|+++.+.++. +...+..+..++..
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHc
Confidence 5555543322 23444444444444
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.20 E-value=1.8e-09 Score=88.25 Aligned_cols=165 Identities=13% Similarity=0.038 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYS-LIV 135 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll 135 (384)
+...+..+...+...|++++|...|++..... +.+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455566666666777777777777766654 4556666666677777777777777777665543 2322222 222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCch
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PYDETFNLLIEGCAKAKRI 214 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 214 (384)
..+...++.+.|...+++..+... .+...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234455666666666666666532 25566666677777777777777777776664311 1145566666677777776
Q ss_pred HHHHHHHHHHH
Q 016681 215 EESLSYCEQMM 225 (384)
Q Consensus 215 ~~a~~~~~~~~ 225 (384)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666665543
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=2.8e-09 Score=82.64 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAK 210 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (384)
+..++.+.|++++|...|++..+.... +...+..+..++...|++++|...|++..+.. +.+..++..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444555555555555555555554222 44455555555555555555555555555543 2233444444444433
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=6.1e-09 Score=80.97 Aligned_cols=176 Identities=9% Similarity=-0.058 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----ChHHHHHHH
Q 016681 6 VAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG----QLQTYVDML 81 (384)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 81 (384)
+|++.|+...+.| ++.++..+...+...+++++|.+.|++..+.| +...+..+...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677777777764 67777777777878888888888888877653 56666667777666 5 778888888
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQ----EERIEEGMVLLKRMLRKNMI-HDTIAYSLIVYAKVK----MRNLESALVVYE 152 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 152 (384)
++....+ +...+..+...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8776644 45566666666665 66777888888777766531 015566667667766 667777777777
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 016681 153 EMLKRGFSANSFVYTTFIGAYCEY-G-----KIEEANCLMQEMENAG 193 (384)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 193 (384)
+..+. ..+...+..+...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77665 12344555666666543 2 6777777777776665
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.18 E-value=9.2e-10 Score=82.92 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=103.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR- 102 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 102 (384)
..+......+.+.|++++|...|+...+..+ .+...+..+...+...|++++|+..++++.... + +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 3455566677778888888888877766533 256677777777888888888888887776554 2 44333322211
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSA-NSFVYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 181 (384)
+...+....|.+.+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 11222333456677776665433 56666677777777777777777777776654332 24466667777777777777
Q ss_pred HHHHHHHHH
Q 016681 182 ANCLMQEME 190 (384)
Q Consensus 182 a~~~~~~~~ 190 (384)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=3.2e-10 Score=82.86 Aligned_cols=143 Identities=9% Similarity=-0.012 Sum_probs=97.5
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
.+...|++++|+..+.......+. +...+..+...|.+.|++++|...|++..+..+. +...|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 344556777777777776654322 3445566777778888888888888887776443 67778888888888888888
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHhhCCCCCCHhHHHHHHHHHhccCC
Q 016681 287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKY-FKIMKSHSLVPGVDIYESLVGIHLEKGN 353 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 353 (384)
|...|++..+.. +-+..++..+...+.+.|++++|.+. +++..+..+. ++.+|......+...|+
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888877764 33566777777788888887665554 5777765443 56666666666666654
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.17 E-value=3e-08 Score=87.15 Aligned_cols=330 Identities=11% Similarity=-0.033 Sum_probs=203.9
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHH
Q 016681 4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ-LQTYVDMLD 82 (384)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 82 (384)
++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66677777777654 122 7899999999999884 4799999999888777763 456777888
Q ss_pred HHHhC-CC-CCcHHhHHHHHHHHH----hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------hcCC
Q 016681 83 RIHGK-RC-SPMVIVNTSLILRII----QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV-------------KMRN 143 (384)
Q Consensus 83 ~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~~~ 143 (384)
..... |. +.+...|...+..+. ..++.+.+.++|++.+......-...|......-. ..+.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 76653 32 456788888887654 35788999999999987422211122222211110 1122
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHH
Q 016681 144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG--K-----IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEE 216 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 216 (384)
+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3334444444432200013345655555433221 1 345677888887754 4556778888888889999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---------C---CCCHHHHHHHHHHHHhcCCH
Q 016681 217 SLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKG---------F---SPNEITYSHLIGGYAKEGEI 284 (384)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~ 284 (384)
|..++++.... + .+...+. .|....+.++. ++.+.+.- . ......|...+....+.++.
T Consensus 232 ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999999987 2 2332222 22222222222 22222210 0 01124577777777778889
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 016681 285 QEVLKLYYEMEYKSISPTLPAYTSLISSLCQC-GKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEE 363 (384)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 363 (384)
+.|..+|++. ... ..+...|......-... ++.+.|..+|+...+.-+. ++..|...+....+.|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 321 22334444333222233 3699999999999885322 456677788888889999999999988
Q ss_pred H
Q 016681 364 M 364 (384)
Q Consensus 364 ~ 364 (384)
+
T Consensus 380 ~ 380 (493)
T 2uy1_A 380 L 380 (493)
T ss_dssp S
T ss_pred H
Confidence 6
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=8.6e-10 Score=80.57 Aligned_cols=140 Identities=11% Similarity=-0.099 Sum_probs=60.0
Q ss_pred hhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681 34 TKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM 113 (384)
Q Consensus 34 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 113 (384)
...|++++|+..++....... .+...+..+...|.+.|++++|++.|++..+.+ +.+..+|..+..++...|++++|+
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 334444444444444332210 012223334444445555555555555544443 334444555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 114 VLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVV-YEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
..|++..+..+. +..++..+...+.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 555554443322 344444444445555544433332 2444433211 3344444444443333
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=2.9e-09 Score=87.06 Aligned_cols=168 Identities=11% Similarity=0.000 Sum_probs=127.1
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHH-H
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYT-T 168 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 168 (384)
+.+...+..+...+...|++++|...|++....... +...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 455667777888888889999999999988877544 67778888888888999999998888876653 3433322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 016681 169 FIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLP-SCSAFNEMIRRLCECG 247 (384)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 247 (384)
....+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667777888888888887765 4566778888888888899999999998888875442 2567888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 016681 248 NAKQANGMLTLALD 261 (384)
Q Consensus 248 ~~~~a~~~~~~~~~ 261 (384)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877653
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=1.2e-08 Score=80.10 Aligned_cols=187 Identities=9% Similarity=0.018 Sum_probs=120.8
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH---HhH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV---IVN 96 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 96 (384)
++..+..+...+.+.|++++|+..|+.+.+..+. |. ...+..+..++.+.|++++|+..|+++.+.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 4455666677788899999999999998876432 11 3567778888889999999999999988764 2222 234
Q ss_pred HHHHHHHHh------------------hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 97 TSLILRIIQ------------------EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 97 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
..+..++.. .|++++|...|+++++..+. +...+...... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH---
Confidence 444444443 45677777777777765322 22222211100 00000000
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 016681 159 FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD----ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLL 230 (384)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (384)
.....+...|.+.|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|.+.++.+...++.
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 111345677888899999999998887753 332 45777888888899999999999888776543
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=2e-09 Score=97.17 Aligned_cols=154 Identities=8% Similarity=-0.056 Sum_probs=120.2
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|++.|++..+.. +.+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78999999999998764 44688899999999999999999999999988643 36888999999999999999999999
Q ss_pred HHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 016681 82 DRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM---RNLESALVVYEEMLKRG 158 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~ 158 (384)
++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998876 667889999999999999999999999999887543 677888899999999 99999999999998874
Q ss_pred C
Q 016681 159 F 159 (384)
Q Consensus 159 ~ 159 (384)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=3e-09 Score=95.99 Aligned_cols=154 Identities=10% Similarity=-0.045 Sum_probs=119.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHH
Q 016681 36 SDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVL 115 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 115 (384)
.|++++|.+.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887533 367889999999999999999999999999876 66788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 016681 116 LKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY---GKIEEANCLMQEMENA 192 (384)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 192 (384)
+++..+.... +...+..+..++.+.|++++|.+.+++..+... .+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887543 678899999999999999999999999988743 3677888899999999 9999999999999876
Q ss_pred C
Q 016681 193 G 193 (384)
Q Consensus 193 ~ 193 (384)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=8.6e-10 Score=83.10 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=76.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcC
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGG-YAKEG 282 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 282 (384)
....+...|++++|...+++..+..+. +...+..+...+...|++++|...++.+....+ +...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 334444455555555555554443322 344455555555555555555555555443321 22222211111 11111
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHhHHHHHHHHHhccCCHHHHHHHH
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP-GVDIYESLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 361 (384)
...+|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223455555555443 2234555556666666666666666666666544332 2345556666666666666666666
Q ss_pred HHHH
Q 016681 362 EEMV 365 (384)
Q Consensus 362 ~~~~ 365 (384)
++.+
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=1.2e-08 Score=79.25 Aligned_cols=176 Identities=10% Similarity=-0.023 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc----chHHHHHHH
Q 016681 41 LVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE----RIEEGMVLL 116 (384)
Q Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 116 (384)
+|.+.|+...+. -+...+..+...+...+++++|..+|++..+.+ ++..+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 455666666654 256677777777777777777777777777654 45556666666666 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHH
Q 016681 117 KRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFS-ANSFVYTTFIGAYCE----YGKIEEANCLMQ 187 (384)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 187 (384)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776665 55566666666665 66777777777777665431 014566666666666 666777777777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhc-C-----chHHHHHHHHHHHhCC
Q 016681 188 EMENAGLKPYDETFNLLIEGCAKA-K-----RIEESLSYCEQMMSRK 228 (384)
Q Consensus 188 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 228 (384)
+..+.+ .+...+..+...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 766641 2233455555555432 2 5667777666666554
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.12 E-value=8.7e-09 Score=85.14 Aligned_cols=198 Identities=11% Similarity=-0.028 Sum_probs=106.8
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDML 81 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 81 (384)
|++++|.+++++..+... .+ .+...++++.|...|... ...+...|++++|...|
T Consensus 5 ~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 567788888887765421 11 011145666666666554 34555677777777777
Q ss_pred HHHHhCCC---CC--cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 016681 82 DRIHGKRC---SP--MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---IH--DTIAYSLIVYAKVKMRNLESALVVY 151 (384)
Q Consensus 82 ~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 151 (384)
.+...... .+ -..+|+.+...|...|++++|+..|++...... .+ ...++..+...|.. |++++|...|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 76543210 11 134566666667777777777777776554210 01 12345555556655 6777777666
Q ss_pred HHHHHcCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCchHHHHHHH
Q 016681 152 EEMLKRGFSA-----NSFVYTTFIGAYCEYGKIEEANCLMQEMENA----GLKPY-DETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 152 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
++..+..... ...++..+...|.+.|++++|+..|++..+. +..++ ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655431000 1344555666666666666666666665442 11111 113344444445556666666666
Q ss_pred HHHH
Q 016681 222 EQMM 225 (384)
Q Consensus 222 ~~~~ 225 (384)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6655
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=2.6e-08 Score=78.18 Aligned_cols=188 Identities=8% Similarity=-0.044 Sum_probs=116.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh--hhHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL-KP-YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC--SAFN 237 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 237 (384)
+...+-.+...+.+.|++++|+..|+++.+... .| ....+..+..++.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677788889999999999998887531 11 1246777788888899999999999998876544221 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh-h-----------
Q 016681 238 EMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP-A----------- 305 (384)
Q Consensus 238 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~----------- 305 (384)
.+..++...+.. .+ ..|..+...+...|+.++|...|+++.+.. |+.. +
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHH
Confidence 444444432100 00 001111111222334444444444444331 2111 1
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HhHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 016681 306 ------YTSLISSLCQCGKLEEADKYFKIMKSHSLVPG--VDIYESLVGIHLEKGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 306 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 368 (384)
...+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 12456678889999999999999988543311 2568888999999999999999999988764
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=6.1e-09 Score=86.09 Aligned_cols=159 Identities=10% Similarity=-0.050 Sum_probs=78.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 016681 136 YAKVKMRNLESALVVYEEMLKR----GFSA-NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL---KPY--DETFNLLI 205 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~ 205 (384)
..|...|++++|...|.+..+. +..+ -..+|+.+..+|...|++++|+..|++..+.-. .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555667777777776665443 1000 123556666666666677777666666543210 111 23444555
Q ss_pred HHHHhcCchHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC-HHHHHHHH
Q 016681 206 EGCAKAKRIEESLSYCEQMMSRKLLP-----SCSAFNEMIRRLCECGNAKQANGMLTLALDKG----FSPN-EITYSHLI 275 (384)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~ 275 (384)
..|.. |++++|+..+++..+..... ...++..+...+...|++++|...+++..+.. ..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 66666666666554421110 02344555555555555555555555554321 1000 11333344
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 016681 276 GGYAKEGEIQEVLKLYYEME 295 (384)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~ 295 (384)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444555555555555554
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.08 E-value=2.8e-07 Score=75.93 Aligned_cols=176 Identities=9% Similarity=-0.007 Sum_probs=123.0
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh-c-ch
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGG-QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE-E-RI 109 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 109 (384)
..+....++|+++++.++..+.. +..+|+.--..+...| .+++++.+++.+...+ +.+..+|+.....+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 34444556889999888886543 5667777777777777 5889999999988877 77788888887777776 6 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLE--------SALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK--- 178 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 178 (384)
++++++++++.+.... |..+|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 8888888888877654 7777776665555555555 777778877776444 67777777777666665
Q ss_pred ----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc
Q 016681 179 ----IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR 213 (384)
Q Consensus 179 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 213 (384)
++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777766654 3445556555444444443
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.03 E-value=5.4e-07 Score=74.27 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=17.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMK 330 (384)
Q Consensus 301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 330 (384)
++...+..++..|...|+.++|.++++.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344455555555666666666666666554
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=6.1e-08 Score=75.29 Aligned_cols=129 Identities=9% Similarity=-0.046 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+..+...+...|++++|...|+.. +.|+...+..+...+...|++++|...|++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3455666777888888888888766 34577788888888888888888888888877765 556777888888888
Q ss_pred hhcchHHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 105 QEERIEEGMVLLKRMLRKNMIH---------------DTIAYSLIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
..|++++|.+.|++..+..... ....+..+..++.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887753221 12566677777778888888888887777653
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=4.3e-07 Score=74.40 Aligned_cols=162 Identities=11% Similarity=0.090 Sum_probs=91.8
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHHHHHH
Q 016681 100 ILRIIQEERIEEGMVLLKRMLRKNM-IHDT----IAYSLIVYAKVKMRNLESALVVYEEMLKRGFS-AN----SFVYTTF 169 (384)
Q Consensus 100 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 169 (384)
+..+...|++++|.+++++...... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766665321 1121 12223445555566777777777776653221 12 2246666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCCC-hhhHHH
Q 016681 170 IGAYCEYGKIEEANCLMQEMEN----A-GLKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLPS-CSAFNE 238 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ 238 (384)
..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777766653 1 11111 235666666777777777777777665432 11111 456666
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHHh
Q 016681 239 MIRRLCECGN-AKQANGMLTLALD 261 (384)
Q Consensus 239 l~~~~~~~~~-~~~a~~~~~~~~~ 261 (384)
+..++...|+ +++|...+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777777774 4777777666553
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=1.1e-08 Score=83.25 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+..+...+.+.|++++|...|+...+... .+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777778888888888888888777533 266777777777888888888888888877765 556777777777
Q ss_pred HHHhhcchHHHHHHHHHHHHc
Q 016681 102 RIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~ 122 (384)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777654
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.5e-08 Score=82.40 Aligned_cols=195 Identities=12% Similarity=-0.001 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 016681 162 NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR 241 (384)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 241 (384)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666677777777777777777776654 335566777777777777777777777777766543 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHH
Q 016681 242 RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEE 321 (384)
Q Consensus 242 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 321 (384)
++...|++++|...++...+..+. +...+...+....+ ..++. -+........+.+......+ ..+ ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 778888888888877776653211 10011111111111 11111 11222223333444443333 222 2678888
Q ss_pred HHHHHHHHhhCCCCCCH-hHHHHHHHHHhcc-CCHHHHHHHHHHHHhC
Q 016681 322 ADKYFKIMKSHSLVPGV-DIYESLVGIHLEK-GNKAKALHLCEEMVSE 367 (384)
Q Consensus 322 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 367 (384)
|.+.++...+.. |+. .....+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888777653 333 3333444444444 6678888888887764
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=2.1e-07 Score=72.18 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=70.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
+..+...+...|++++|...|++.. .|+...+..+...+...|++++|.+.+++..+.... +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 3444555556666666666666552 345556666666666666666666666666554322 45555556666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 141 MRNLESALVVYEEMLKRGFSANS----------------FVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
.|++++|.+.|++..+.... +. ..+..+..++...|++++|...|+...+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666666666554221 11 3444455555555555555555555544
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=7.1e-07 Score=73.09 Aligned_cols=163 Identities=10% Similarity=-0.060 Sum_probs=118.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGF-SANS----FVYTTFIGAYCEYGKIEEANCLMQEMENAGLK-PY----DETFNL 203 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 203 (384)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45677888999999999999877532 2221 13335667777788999999999998874322 22 225888
Q ss_pred HHHHHHhcCchHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-HHHHH
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMS----R-KLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDK----GFSPN-EITYS 272 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 272 (384)
+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...++...+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999988874 1 1111 2347788889999999999999998877642 22222 56788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHh
Q 016681 273 HLIGGYAKEGE-IQEVLKLYYEMEY 296 (384)
Q Consensus 273 ~l~~~~~~~~~-~~~a~~~~~~~~~ 296 (384)
.+..++.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999994 6899988887754
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=6.3e-08 Score=68.16 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=54.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681 24 ISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 24 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
..+......+.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3445555555666666666666666555432 245555555555556666666666666555544 44455555555555
Q ss_pred HhhcchHHHHHHHHHHHHc
Q 016681 104 IQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 104 ~~~~~~~~a~~~~~~~~~~ 122 (384)
...|++++|.+.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5556666666655555554
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=3.8e-09 Score=88.38 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---------------HHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---------------VIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
...+..+...+.+.|++++|+..|++..... +.+ ..+|..+..++.+.|++++|+..+++.++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555555666666666666555443 222 466666777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 016681 123 NMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEA-NCLMQEME 190 (384)
Q Consensus 123 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 190 (384)
... +...+..+..++...|++++|...|++..+.... +...+..+..++.+.|+.++| ...+..|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 5666666777777777777777777777665322 555666666777777777666 33444443
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=1e-07 Score=70.61 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444555555555555555555554322 234445555555555555555555555554443 334444444555555
Q ss_pred hhcchHHHHHHHHHHHHc
Q 016681 105 QEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~ 122 (384)
..|++++|.+.+++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 555555555555554443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=1.3e-07 Score=70.07 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=62.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.+++..+.... +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444555555566666666666555443 334555555555555555666665555555554321 4445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYT--TFIGAYCEYGKIEEANCLMQE 188 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~ 188 (384)
..|++++|...+++..+.... +...+. .....+...|++++|.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555555555544221 222221 222224444555555554443
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=1.1e-07 Score=66.83 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=47.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK 140 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 140 (384)
+......+.+.|++++|++.|++..+.+ +.+...|..+..++.+.|++++|++.+++.++.+.. +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 4444445555555555555555554443 344455555555555555555555555555444322 34444445555555
Q ss_pred cCChHHHHHHHHHHHHc
Q 016681 141 MRNLESALVVYEEMLKR 157 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~ 157 (384)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555554443
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=8.7e-07 Score=72.57 Aligned_cols=167 Identities=11% Similarity=0.068 Sum_probs=90.5
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--h
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD-----TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS---AN--S 163 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 163 (384)
..+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+.... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444455556666666666666665555422211 012233444555666677777666666543111 11 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCchHHHHHHHHHHHhCC----CCC-C
Q 016681 164 FVYTTFIGAYCEYGKIEEANCLMQEMENA-GLKPY-----DETFNLLIEGCAKAKRIEESLSYCEQMMSRK----LLP-S 232 (384)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 232 (384)
.+++.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35666666667777777777766665521 00111 1356666666667777777777666654321 111 1
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 016681 233 CSAFNEMIRRLCECGNAKQA-NGMLTLAL 260 (384)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 260 (384)
..++..+..++...|++++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44566666777777777777 55555544
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.87 E-value=1.5e-07 Score=65.84 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
...|..+...+...|++++|.+.++.+.+... .+..++..+...+...|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 44555555666666666666666666655422 244555555555666666666666666555443 3345555555555
Q ss_pred HHhhcchHHHHHHHHHHHHc
Q 016681 103 IIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~ 122 (384)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555544
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=8.5e-08 Score=72.09 Aligned_cols=117 Identities=7% Similarity=-0.019 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--HHHH
Q 016681 72 GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA-KVKMRNL--ESAL 148 (384)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a~ 148 (384)
|++++|...+++..... +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444444444444332 333444444444444444444444444444443221 33344444444 3444444 5555
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 149 VVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
..+++..+.... +...+..+..++...|++++|...++++.+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554443211 334444444555555555555555555444
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=5.9e-08 Score=74.70 Aligned_cols=155 Identities=8% Similarity=-0.081 Sum_probs=67.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCcHHhHHHHHHHHHhhcch
Q 016681 35 KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK----RC-SPMVIVNTSLILRIIQEERI 109 (384)
Q Consensus 35 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 109 (384)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34455555553333322 11123344445555555555555555555544331 10 11233444555555555555
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCC
Q 016681 110 EEGMVLLKRMLRK----NMIH--DTIAYSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGK 178 (384)
Q Consensus 110 ~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~ 178 (384)
++|.+.+++.... +..| ....+..+...+...|++++|...+++..+. +.. .-..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555554432 1010 1223444455555555555555555554432 100 001223445555555666
Q ss_pred HHHHHHHHHHHH
Q 016681 179 IEEANCLMQEME 190 (384)
Q Consensus 179 ~~~a~~~~~~~~ 190 (384)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=2.5e-07 Score=64.69 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681 59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK 138 (384)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 138 (384)
..+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 344445555555555555555555554443 33444555555555555555555555555544322 1344444445555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 016681 139 VKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~ 157 (384)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=1.2e-07 Score=67.27 Aligned_cols=99 Identities=6% Similarity=-0.034 Sum_probs=53.6
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...|..+...+.+.|++++|...|+...+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 445555555556666666666666665555322 244555555555555555555555555555443 334455555555
Q ss_pred HHHhhcchHHHHHHHHHHHHc
Q 016681 102 RIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 555555555555555555543
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=5e-08 Score=70.88 Aligned_cols=96 Identities=9% Similarity=-0.007 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+.+.|++++|...|++....+ |.+...|..+..++...|++++|+..|++.....+. +...|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 34444444555555555555555555443 344455555555555555555555555555544322 3444444555555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 016681 140 KMRNLESALVVYEEMLKR 157 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~ 157 (384)
+.|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=1.9e-07 Score=66.23 Aligned_cols=98 Identities=8% Similarity=0.024 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555556666666666666666655543 344555555555666666666666666665554322 44555555555
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 016681 138 KVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~ 157 (384)
+.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55556666666555555544
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=1.2e-07 Score=66.96 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=61.0
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 344455555555566666666666665555422 244555555555555555555555555555443 334445555555
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
.+...|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 555555555555555555544322 3444444444444443
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=6.4e-08 Score=72.79 Aligned_cols=123 Identities=9% Similarity=0.053 Sum_probs=91.1
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HHhhcch--
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR-IIQEERI-- 109 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 109 (384)
+...|++++|...++...+... .+...+..+...+...|++++|...|++..... +.+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 3456778888888888777643 367778888888888888888888888887765 5567777777777 6778887
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
++|...+++..+.... +...+..+...+...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888876533 56777778888888888888888888887763
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.4e-07 Score=75.24 Aligned_cols=187 Identities=10% Similarity=-0.074 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHHHhcCCCCchhhHHHH-------HHHHhhcCChhHHHHHHHHHHh------------cCCC-------
Q 016681 2 RLFEVAFDVCRYLEQRGFSLSLISFNTL-------IHVVTKSDRNDLVWRIYQHMLE------------NIRY------- 55 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~------- 55 (384)
+++++|.+.|..+.+.. +-....|+.+ ...+...++..++...+..-.. .|..
T Consensus 20 ~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 46677777777777664 3366777666 4555555555555554444433 1100
Q ss_pred -CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHH
Q 016681 56 -PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYS 132 (384)
Q Consensus 56 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 132 (384)
--......+...+...|++++|.++|+.+...+ +-+. ....+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 002233445566666777777777777665543 2223 44455556667777777777776443321 110 22455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKRGFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEMENA 192 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (384)
.+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566666677777777777776654322132 234445556666677777777777776664
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=4.1e-07 Score=74.55 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-----HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC---CCC-
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM-----VIVNTSLILRIIQEERIEEGMVLLKRMLRKNM---IHD- 127 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 127 (384)
....+...+..+...|++++|.+.+.+........+ ...+..+...+...|++++|+..+++...... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666778888999999999999988776542211 12344566777888999999999999875321 112
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c-CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC
Q 016681 128 -TIAYSLIVYAKVKMRNLESALVVYEEMLK---R-GFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAG----LKP 196 (384)
Q Consensus 128 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 196 (384)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 45788899999999999999999998873 2 1111 12578889999999999999999998876432 111
Q ss_pred -ChhhHHHHHHHHHhcCchHHH-HHHHHHHHh
Q 016681 197 -YDETFNLLIEGCAKAKRIEES-LSYCEQMMS 226 (384)
Q Consensus 197 -~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 226 (384)
-..+|..+...|.+.|++++| ...+++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 146788888999999999999 777776654
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=2.1e-07 Score=65.69 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=54.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++....... +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 44444455555555555555555554433 334444555555555555555555555555443221 3444444444555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
..|++++|...+++..+... .+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55555555555555444321 13333444444444333
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=8.1e-08 Score=69.77 Aligned_cols=108 Identities=11% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFS 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 160 (384)
|+++.... +.+...+..+...+...|++++|...|++....... +...|..+..++...|++++|...|++.......
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34444333 334455555666666666666666666666655432 5556666666666666666666666666655322
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 161 ANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
+...+..+..++...|++++|...|+...+
T Consensus 88 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 88 -EPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666654
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=1.2e-07 Score=72.94 Aligned_cols=156 Identities=9% Similarity=-0.046 Sum_probs=89.6
Q ss_pred HccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCC
Q 016681 69 CKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK----NMI-HDTIAYSLIVYAKVKMRN 143 (384)
Q Consensus 69 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~ 143 (384)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567788888755544432 1345667777777788888888888888776652 111 133456666667777777
Q ss_pred hHHHHHHHHHHHHc----CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHHhcC
Q 016681 144 LESALVVYEEMLKR----GFSA--NSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL---KPY--DETFNLLIEGCAKAK 212 (384)
Q Consensus 144 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~ 212 (384)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777766543 1111 233456666677777777777777766543210 111 122345555556666
Q ss_pred chHHHHHHHHHHH
Q 016681 213 RIEESLSYCEQMM 225 (384)
Q Consensus 213 ~~~~a~~~~~~~~ 225 (384)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555543
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=5.8e-08 Score=70.50 Aligned_cols=100 Identities=7% Similarity=-0.109 Sum_probs=90.9
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+..+...+.+.|++++|...|+...+..+ .+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 556788888999999999999999999998754 378899999999999999999999999999887 677889999999
Q ss_pred HHHhhcchHHHHHHHHHHHHcC
Q 016681 102 RIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
++...|++++|.+.|++..+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999865
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.6e-07 Score=74.79 Aligned_cols=126 Identities=7% Similarity=-0.073 Sum_probs=55.9
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhc
Q 016681 99 LILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSAN--SFVYTTFIGAYCEY 176 (384)
Q Consensus 99 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 176 (384)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444555555555555555554432 222133333344555555555555554332211 000 12344444555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCchHHHHHHHHHHHhC
Q 016681 177 GKIEEANCLMQEMENAGLKPY--DETFNLLIEGCAKAKRIEESLSYCEQMMSR 227 (384)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 227 (384)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555443221122 122333334444555555555555555544
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=2.5e-07 Score=77.32 Aligned_cols=128 Identities=11% Similarity=-0.107 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPN--------------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (384)
.+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444444455555555555554444322211 3556666666666666666666666666553 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHH-HHHHHHH
Q 016681 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKA-LHLCEEM 364 (384)
Q Consensus 301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 364 (384)
.+...|..+..++...|++++|...|+++.+..+. +...+..+..++...|+.++| ...++.|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666664433 455566666666666666665 3344444
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.78 E-value=8.6e-08 Score=69.63 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+..+...+.+.|++++|...|+....... .+...|..+..++...|++++|+..|++....+ +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 445555566666666666666666666665432 255566666666666666666666666666554 445566666666
Q ss_pred HHHhhcchHHHHHHHHHHHHc
Q 016681 102 RIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~ 122 (384)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666553
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.77 E-value=4e-05 Score=62.94 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHH
Q 016681 110 EEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR--NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGK-IEEANCLM 186 (384)
Q Consensus 110 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 186 (384)
++++.+++.+....++ +..+|+.-...+.+.+ .++++..+++.+.+.... |...|+.-..++...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3444444444443322 3344443333333333 244444444444443222 33444443333444444 34444444
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc--------------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc------
Q 016681 187 QEMENAGLKPYDETFNLLIEGCAKA--------------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC------ 246 (384)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 246 (384)
..+.+.. +-|...|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 4444433 22333333333222222 2345555555555554433 444444333333332
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 016681 247 -----GNAKQANGMLTLALDKGFSPNEITYSHLIG---GYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 247 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~ 297 (384)
+.++++.+.++++.+..+. +...+..++. .....+..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 2355666666666654322 2222211111 111345666777777777665
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=3.1e-08 Score=76.06 Aligned_cols=55 Identities=9% Similarity=-0.077 Sum_probs=24.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 32 VVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
.....|+++++.+.|+.-..... .....+..+...+...|++++|...|++....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp ---------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33344455555554443222111 12334555566666677777777777766654
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=2.8e-08 Score=76.33 Aligned_cols=125 Identities=11% Similarity=-0.039 Sum_probs=79.2
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN---------------EATIRTLISALCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 86 (384)
....+..+...+.+.|++++|...|++..+...... ...+..+..++...|++++|+..+++...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455677888899999999999999999987532211 15556666666666667777666666665
Q ss_pred CCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681 87 KRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL 148 (384)
Q Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 148 (384)
.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 54 445566666666666666666666666666654322 4445555555555444444443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.73 E-value=2.7e-07 Score=66.44 Aligned_cols=97 Identities=9% Similarity=0.015 Sum_probs=56.9
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA 172 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (384)
...+..+...+.+.|++++|...|++....... +...|..+..++.+.|++++|...|+...+.... +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344445555566666666666666666554432 5555555666666666666666666666555322 44555556666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 016681 173 YCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~ 191 (384)
+...|++++|...|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.2e-07 Score=63.38 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
...|......+.+.|++++|+..|+...+... .+...|..+..++.+.|++++|+..+++..+.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34455556666666666666666666665432 245566666666666666666666666666554 4455566666666
Q ss_pred HHhhcchHHHHHHHHHHHHc
Q 016681 103 IIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~ 122 (384)
+...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 66666666666666665554
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.4e-06 Score=60.07 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
+..+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34445555555555666666666655555422 244455555555555555555555555555443 3344455555555
Q ss_pred HHhhcchHHHHHHHHHHHHc
Q 016681 103 IIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~ 122 (384)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555543
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=1.5e-06 Score=59.82 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 016681 59 ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAK 138 (384)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 138 (384)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 344555555556666666666666655543 344555555555566666666666666665554322 444555555555
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 016681 139 VKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~ 157 (384)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5556666666555555544
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=9e-07 Score=62.14 Aligned_cols=96 Identities=10% Similarity=0.028 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44455555556666666666666655544 445555666666666666666666666665554322 4455555555566
Q ss_pred hcCChHHHHHHHHHHHHc
Q 016681 140 KMRNLESALVVYEEMLKR 157 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~ 157 (384)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666555543
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=8.9e-05 Score=60.86 Aligned_cols=196 Identities=12% Similarity=0.035 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCc-hHHHHHH
Q 016681 144 LESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG--KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKR-IEESLSY 220 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 220 (384)
+++++.+++.+.....+ +..+|+.-..++...+ .+++++.+++.+.+.. +-|..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 56777788887776444 7777777777777777 4788888888888766 4566777766666667776 5788888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----
Q 016681 221 CEQMMSRKLLPSCSAFNEMIRRLCEC--------------GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE----- 281 (384)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 281 (384)
++.+.+.++. +..+|+.....+... +.++++.+.+.......+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 8888887765 777777666665554 3467788888888776544 777777655555544
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCChhhHHHHHH-----HHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 016681 282 ------GEIQEVLKLYYEMEYKSISPTLPAYTSLIS-----SLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI 347 (384)
Q Consensus 282 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 347 (384)
+.++++++.++++.+.. |+. .|..+.. .....|..+++...+.++++.++. ...-|.-+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHHH
Confidence 35678888888888764 443 3332221 222456777888888888875432 33445444433
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=5.3e-07 Score=61.58 Aligned_cols=100 Identities=7% Similarity=-0.114 Sum_probs=66.6
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--cHHhHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP--MVIVNTSL 99 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 99 (384)
+...|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 455566666777777777777777777766532 255666666677777777777777777766654 44 56666666
Q ss_pred HHHHHhh-cchHHHHHHHHHHHHcC
Q 016681 100 ILRIIQE-ERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 100 ~~~~~~~-~~~~~a~~~~~~~~~~~ 123 (384)
...+... |++++|.+.+++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6677777 77777777777666554
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=4e-07 Score=65.60 Aligned_cols=99 Identities=8% Similarity=-0.143 Sum_probs=63.2
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...+..+...+.+.|++++|...|+......+ .+...|..+..++...|++++|+..|++....+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 344455556666667777777777776666533 255666666666666777777777777666654 455566666666
Q ss_pred HHHhhcchHHHHHHHHHHHHc
Q 016681 102 RIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~ 122 (384)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666677777777766666554
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=1.6e-06 Score=60.99 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=21.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
+...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|++.+++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3333344444444444444433332 233333444444444444444444444433
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=1.5e-06 Score=61.90 Aligned_cols=99 Identities=15% Similarity=0.015 Sum_probs=73.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 016681 232 SCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLIS 311 (384)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 311 (384)
+...+..+...+...|++++|...|+......+. +...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 5667777777788888888888888877776433 56777777777778888888888888777664 345667777777
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 016681 312 SLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 312 ~~~~~g~~~~a~~~~~~~~~~ 332 (384)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 777888888888888777653
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=1.7e-06 Score=63.94 Aligned_cols=100 Identities=8% Similarity=-0.008 Sum_probs=68.5
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
+...|..+...+.+.|++++|+..|+..++... .+...|..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666677777777777777777777776533 256667777777777777777777777776665 455666777777
Q ss_pred HHHhhcchHHHHHHHHHHHHcC
Q 016681 102 RIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
++...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 7777777777777777766543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=3.7e-06 Score=59.83 Aligned_cols=24 Identities=4% Similarity=-0.093 Sum_probs=8.9
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHH
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHM 49 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~ 49 (384)
|..+...+...|++++|...|+..
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~a 35 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRA 35 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHH
Confidence 333333333333333333333333
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-06 Score=60.91 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=54.7
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPN----EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNT 97 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (384)
+...+..+...+...|++++|.+.|+...+. .|+ ...+..+...+...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455555556666666666666666665553 233 3455555555555666666666665555443 33455555
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+..++...|++++|.+.|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555556666666555555544
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=2.4e-06 Score=63.18 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
...+..+...+...|++++|+..|++..... +.+...|..+..++...|++++|+..|++.++.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4456666667777777777777777776655 456667777777777777777777777777765433 56666667777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 016681 138 KVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~ 157 (384)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=1.9e-06 Score=58.78 Aligned_cols=97 Identities=12% Similarity=-0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CCHhHHHHHHHHH
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV-PGVDIYESLVGIH 348 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 348 (384)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34444444455555555555555544432 223344444555555555555555555555543211 0244455555555
Q ss_pred hcc-CCHHHHHHHHHHHHhC
Q 016681 349 LEK-GNKAKALHLCEEMVSE 367 (384)
Q Consensus 349 ~~~-g~~~~a~~~~~~~~~~ 367 (384)
... |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555555543
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=1.4e-06 Score=61.30 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=20.2
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333344444444443333322 223333333333344444444444444433
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.1e-05 Score=69.95 Aligned_cols=197 Identities=13% Similarity=0.005 Sum_probs=101.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 016681 135 VYAKVKMRNLESALVVYEEMLKRGFSANS----------------FVYTTFIGAYCEYGKIEEANCLMQEMENAG-LKPY 197 (384)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 197 (384)
.+.+.+.|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34566778888888888887765322110 135566777777777777777776665421 1111
Q ss_pred hh----hHHHHHHHHHhcCchHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--
Q 016681 198 DE----TFNLLIEGCAKAKRIEESLSYCEQMMSR----KLLP-SCSAFNEMIRRLCECGNAKQANGMLTLALDKG--F-- 264 (384)
Q Consensus 198 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-- 264 (384)
.. ..+.+-..+...|+++.+..++...... +..+ -..++..+...+...|++++|..+++.+...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1111222223345666666666655431 1111 13345556666666666666666666554321 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 265 SP-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYK--SISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 265 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
.+ ....+..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1234555556666666666666666655432 11111 12334444445555666666665555443
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=1.2e-07 Score=82.88 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=78.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---------------HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---------------VIVNTSLILRIIQEERIEEGMVLLKRMLRKNM 124 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 124 (384)
.+..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..+++.++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 44444555555555555555555544432 111 46667777777777777777777777777643
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 016681 125 IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANC-LMQEM 189 (384)
Q Consensus 125 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~ 189 (384)
. +...|..+..++...|++++|...|++..+.... +...+..+..++.+.++.+++.+ .+..|
T Consensus 349 ~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 349 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5667777777777777777777777777765322 45566677777777777766653 34443
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=1.7e-06 Score=60.21 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=70.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+..+...+.+.|++++|+..|+..++... .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 355566677778888888888888777643 267777777777888888888888888877765 556777777777888
Q ss_pred hhcchHHHHHHHHHHHHc
Q 016681 105 QEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~ 122 (384)
..|++++|+..+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=6.6e-06 Score=59.29 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHH
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSL 133 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (384)
+...+..+...+...|++++|...|++..+.. +.+ ...+..+...+...|++++|.+.+++..+.... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 45556666666666666666666666666543 222 455555566666666666666666665554322 4455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555566666666666666655554
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3.1e-06 Score=59.46 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGF--SAN----SFVYT 167 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 167 (384)
..+..+...+.+.|++++|++.|++.++..+. +...|..+..++.+.|++++|.+.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45556677777777777777777777765433 566677777777777777777777777665321 111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566666677777777777766655
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=1.2e-06 Score=60.91 Aligned_cols=93 Identities=14% Similarity=-0.022 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhcc
Q 016681 272 SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEK 351 (384)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (384)
..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334445555666666666666665543 234455555556666666666666666666554433 455555666666666
Q ss_pred CCHHHHHHHHHHHHh
Q 016681 352 GNKAKALHLCEEMVS 366 (384)
Q Consensus 352 g~~~~a~~~~~~~~~ 366 (384)
|++++|...+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=1.4e-06 Score=61.27 Aligned_cols=111 Identities=10% Similarity=0.057 Sum_probs=87.7
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-------HH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM-------VI 94 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 94 (384)
....|..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+ ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHH
Confidence 356778888999999999999999999988743 467888899999999999999999999987653 222 66
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 016681 95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVY 136 (384)
Q Consensus 95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 136 (384)
++..+...+...|++++|.+.|++..+.. |+......+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 77788888888888888888888887754 35544444433
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.5e-05 Score=67.67 Aligned_cols=190 Identities=13% Similarity=0.010 Sum_probs=133.4
Q ss_pred cchHHHHHHHHHHHhcCCCCc----------------hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-CCHH----H
Q 016681 2 RLFEVAFDVCRYLEQRGFSLS----------------LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-PNEA----T 60 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~ 60 (384)
|++++|++.|..+.+...... ..++..+...|.+.|++++|.+.+..+.+.-.. ++.. +
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 789999999999987642211 124778899999999999999999887764211 2221 2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh----CCCC-CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC--C--CC-CHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHG----KRCS-PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN--M--IH-DTIA 130 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--~~-~~~~ 130 (384)
.+.+...+...|+.+.|..+++.... .+.. .-..++..+...+...|++++|..++.++...- . .+ ...+
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 177 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV 177 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 23333444456889999998887653 2212 235677888999999999999999999876531 1 11 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKR----GFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
+..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 178 HLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 788888999999999999999887643 11111 24456666777888999999888877654
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.45 E-value=5.3e-07 Score=62.43 Aligned_cols=85 Identities=12% Similarity=-0.026 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHHHhcC--CCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 016681 2 RLFEVAFDVCRYLEQRG--FSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVD 79 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 79 (384)
|++++|+..|+...+.+ -+.+..+|..+..++...|++++|+..|++..+..+. +...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 55566666666665543 1223455555556666666666666666666554322 35555555555666666666666
Q ss_pred HHHHHHhC
Q 016681 80 MLDRIHGK 87 (384)
Q Consensus 80 ~~~~~~~~ 87 (384)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66555443
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=4.4e-06 Score=72.98 Aligned_cols=122 Identities=10% Similarity=-0.109 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKGFSPN--------------EITYSHLIGGYAKEGEIQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 300 (384)
.+..+...+.+.|++++|...|+++.+...... ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 445555556666666666666666555322211 4566666667777777777777777766654 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHH
Q 016681 301 PTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 301 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
.+...|..+..+|...|++++|...|+++.+..+. +...+..+..++.+.|+.+++.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777777777777777777665433 4455666666666666666554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=3.5e-07 Score=80.22 Aligned_cols=124 Identities=11% Similarity=-0.022 Sum_probs=94.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
+..+...+.+.|++++|.+.|++..+... .+...+..+..++.+.|++++|++.+++..+.. +.+...+..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44445567788999999999999888643 257888889999999999999999999988876 6678888889999999
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA--KVKMRNLESALVVYE 152 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 152 (384)
.|++++|++.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998876533 34455555545 778889999998887
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=1.8e-06 Score=75.76 Aligned_cols=114 Identities=6% Similarity=-0.033 Sum_probs=93.7
Q ss_pred CcchHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 016681 1 MRLFEVAFDVCRYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDM 80 (384)
Q Consensus 1 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 80 (384)
.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... .+...+..+..++...|++++|.+.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999998874 44789999999999999999999999999998643 3678899999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHH--HHhhcchHHHHHHHH
Q 016681 81 LDRIHGKRCSPMVIVNTSLILR--IIQEERIEEGMVLLK 117 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 117 (384)
|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99998765 4455566666666 888999999999988
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=1.9e-05 Score=55.41 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=52.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHH
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNE---ATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLIL 101 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 101 (384)
.+...+...|++++|...|+.+.+.... +. ..+..+...+...|++++|...|+++.... +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445555666666666666666654321 12 345555556666666666666666665543 222 444555555
Q ss_pred HHHhhcchHHHHHHHHHHHHc
Q 016681 102 RIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~ 122 (384)
++...|++++|...|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.38 E-value=2.6e-05 Score=54.62 Aligned_cols=91 Identities=8% Similarity=-0.034 Sum_probs=41.1
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcH---HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMV---IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD--TIAYSLIVYAKVK 140 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~ 140 (384)
..+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+...... ...+..+..++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444555555555555554432 2222 3444444455555555555555555444322100 3334444444444
Q ss_pred cCChHHHHHHHHHHHHc
Q 016681 141 MRNLESALVVYEEMLKR 157 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~ 157 (384)
.|++++|...|+.+.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555444443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=2.8e-06 Score=62.30 Aligned_cols=132 Identities=20% Similarity=0.103 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-Chh
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKGFS-PN----EITYSHLIGGYAKEGEIQEVLKLYYEMEYKS----ISP-TLP 304 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 304 (384)
++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+.. -.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555556666665555554432100 01 1355556666666777777777776654321 000 133
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSH----SLV-PGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
++..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566667777777777777777766542 111 1134566677777888888888888877654
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=5e-06 Score=60.91 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKR----GFS-ANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444445555555444444322 000 01223334444444455555555444443
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=7.8e-05 Score=66.70 Aligned_cols=173 Identities=9% Similarity=0.006 Sum_probs=116.6
Q ss_pred ChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 73 QLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER----------IEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
..++|++.++++...+ +.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3456677777777665 5556667666666666665 77777777777776554 6667776666677777
Q ss_pred --ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------
Q 016681 143 --NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG-KIEEANCLMQEMENAGLKPYDETFNLLIEGCAKA-------- 211 (384)
Q Consensus 143 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 211 (384)
+++++.+.++++.+.... +...|+.-..++.+.| .++++++.++++.+.. +-+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 557777777777776444 6667776666667777 6777777777776654 34555666555555442
Q ss_pred ------CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 016681 212 ------KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAK 250 (384)
Q Consensus 212 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (384)
+.++++++.+++.....+. +...|...-..+.+.+..+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 5578888888888877655 6777877777776666533
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=9.1e-06 Score=68.69 Aligned_cols=137 Identities=7% Similarity=0.006 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRII 104 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 104 (384)
.+..+...+.+.|++++|+..|++.++.-. ... .... .+...... +.+..+|..+..++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--GSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--cCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455666667777777777777776665200 000 0000 00000011 223445555555666
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 016681 105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEAN 183 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 183 (384)
+.|++++|++.+++.++.... +...+..+..++...|++++|.+.|++..+.... +...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554322 4555555556666666666666666665554221 4445555555555555555443
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=5.5e-05 Score=67.66 Aligned_cols=173 Identities=9% Similarity=-0.014 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ----------LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEE 107 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 107 (384)
..++|++.++.+...++. +..+|+.--..+...|+ ++++++.++.+.+.+ +-+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 446789999999987543 56677777666666666 899999999999887 778899999998999999
Q ss_pred --chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--------
Q 016681 108 --RIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR-NLESALVVYEEMLKRGFSANSFVYTTFIGAYCEY-------- 176 (384)
Q Consensus 108 --~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 176 (384)
+++++++.++++.+.+.. +..+|+.-...+.+.| .++++.+.++++.+..+. |...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 679999999999998766 8889988888888888 899999999999887554 788888877777663
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681 177 ------GKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 177 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (384)
+.++++++.+++..... +-+...|.-.-..+.+.++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788999998888765 455677777766666666533
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=2e-06 Score=59.51 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=49.3
Q ss_pred cCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH
Q 016681 36 SDRNDLVWRIYQHMLENIR--YPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM 113 (384)
Q Consensus 36 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 113 (384)
.|++++|+..|++.++.+. +.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665421 1134455666666666666666666666666554 445566666666666666666666
Q ss_pred HHHHHHHHc
Q 016681 114 VLLKRMLRK 122 (384)
Q Consensus 114 ~~~~~~~~~ 122 (384)
+.+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.31 E-value=1.2e-05 Score=67.95 Aligned_cols=138 Identities=9% Similarity=-0.001 Sum_probs=96.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKV 139 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 139 (384)
.+..+...+.+.|++++|+..|++..+.. +.. ......+. ..... +.+..+|..+..++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHHH-HHHHHHHHHHHHHHH
Confidence 45556666777777777777777665421 000 00001111 11111 114567888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLS 219 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 219 (384)
+.|++++|.+.+++..+... .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998743 367888999999999999999999999998865 3455677777777777787777654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=2.5e-05 Score=57.43 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
..|..+..++.+.|++++|+..+++.+..... +...|..+..++...|++++|...|+...+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44455555555555555555555555554322 4445555555555555555555555555444
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=2.2e-05 Score=57.71 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=86.1
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhc--------CC--------C-CCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLEN--------IR--------Y-PNEATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
.+..+......+.+.|++++|+..|...++. .. . .+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4556777888999999999999999998875 00 1 13467888899999999999999999999
Q ss_pred HhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681 85 HGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
...+ +.+...|..+..++...|++++|...|++.....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8876 7778999999999999999999999999998874
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=3e-05 Score=55.81 Aligned_cols=97 Identities=13% Similarity=-0.036 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCC-C-----CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRY-P-----NE-----ATIRTLISALCKGGQLQTYVDMLDRIHGK---- 87 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 87 (384)
...+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++....
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344555666777888888888888887775332 1 11 14555555555555555555555554443
Q ss_pred ---CCCCcHHhH----HHHHHHHHhhcchHHHHHHHHHHH
Q 016681 88 ---RCSPMVIVN----TSLILRIIQEERIEEGMVLLKRML 120 (384)
Q Consensus 88 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 120 (384)
+ +.+...| .....++...|++++|+..|++..
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2233344 444444444444444444444443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=5.8e-06 Score=69.09 Aligned_cols=149 Identities=10% Similarity=0.025 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
...+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344666667777788888888888877664 233221 112222222222111 1366777777
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCCHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGA-YCEYGKIEE 181 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 181 (384)
+.+.|++++|+..+++.++.... +...|..+..++...|++++|...|++..+.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887776432 6677777888888888888888888877654221 34444444444 233455667
Q ss_pred HHHHHHHHHHc
Q 016681 182 ANCLMQEMENA 192 (384)
Q Consensus 182 a~~~~~~~~~~ 192 (384)
+...|..+...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777553
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.19 E-value=7.3e-06 Score=68.47 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHH-H
Q 016681 270 TYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGI-H 348 (384)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 348 (384)
.|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+..+. +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 77888889999999999999999988774 446778888999999999999999999998875433 44555555555 3
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 016681 349 LEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 349 ~~~g~~~~a~~~~~~~~~~ 367 (384)
...+..+.+...|.+|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 4456777888888888754
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=3.5e-05 Score=55.46 Aligned_cols=93 Identities=14% Similarity=-0.053 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------C-----hhhHHHHHHHHHhcCChHHHHHHHHHHhhC-------CC
Q 016681 273 HLIGGYAKEGEIQEVLKLYYEMEYKSISP------T-----LPAYTSLISSLCQCGKLEEADKYFKIMKSH-------SL 334 (384)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 334 (384)
.....+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++. ++
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444445555555555555554432110 1 126666666677777777777777766664 32
Q ss_pred CCCHhHH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 335 VPGVDIY----ESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 335 ~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
. +...| .....++...|++++|+..|++.++
T Consensus 96 d-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 D-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp T-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 34556 6777777777777777777777664
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=0.00013 Score=51.92 Aligned_cols=110 Identities=14% Similarity=-0.040 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChHHHH
Q 016681 248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ----CGKLEEAD 323 (384)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 323 (384)
++++|...|++..+.|. |+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555544431 1221 3444444444555555555555443 33444445555544 45555555
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 016681 324 KYFKIMKSHSLVPGVDIYESLVGIHLE----KGNKAKALHLCEEMVSEG 368 (384)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 368 (384)
.+|++..+.| ++..+..|...|.. .++.++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34445555555555 555566666666555554
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=0.00019 Score=51.06 Aligned_cols=86 Identities=8% Similarity=-0.071 Sum_probs=37.8
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--
Q 016681 102 RIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVK----MRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE-- 175 (384)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 175 (384)
.|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 3333344444444444444443 33344444444444 444444444444444432 23334444444444
Q ss_pred --cCCHHHHHHHHHHHHHcC
Q 016681 176 --YGKIEEANCLMQEMENAG 193 (384)
Q Consensus 176 --~~~~~~a~~~~~~~~~~~ 193 (384)
.+++++|.++|++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 444445554444444433
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=6e-05 Score=51.05 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=55.7
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc------HHh
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM------VIV 95 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 95 (384)
+...|..+...+...|++++|++.|+...+... .+...+..+..++...|++++|+..+++..... +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 455666667777777777777777777766533 256666677777777777777777777776654 222 334
Q ss_pred HHHHHHHHHhhcchHHHH
Q 016681 96 NTSLILRIIQEERIEEGM 113 (384)
Q Consensus 96 ~~~l~~~~~~~~~~~~a~ 113 (384)
+..+..++...|+++.|.
T Consensus 81 ~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHhHhhhH
Confidence 444444555555444443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=6.6e-05 Score=51.42 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
+...+..+...+...|++++|...|+...+... .+...|..+...+...|++++|...|++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444443321 12333344444444444444444444433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.99 E-value=6.3e-05 Score=51.52 Aligned_cols=77 Identities=12% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEML 155 (384)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 155 (384)
|+..|++..+.. +.+...+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444333 333444444444444444444444444444443221 33344444444444444444444444443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=6.9e-05 Score=65.46 Aligned_cols=97 Identities=11% Similarity=-0.067 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHHh-----CCCC-C
Q 016681 165 VYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLLIEGCAKAKRIEESLSYCEQMMS-----RKLL-P 231 (384)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~ 231 (384)
+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.+...|...|++++|..++++..+ .|.. |
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4444555555555555555555444321 1 0111 23444555555555555555555544432 1211 1
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016681 232 -SCSAFNEMIRRLCECGNAKQANGMLTLALD 261 (384)
Q Consensus 232 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 261 (384)
...+.+.+..++...+.+++|+.++..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233444445555555555555555544
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=5.5e-05 Score=66.07 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
.+++.|...|...|++++|+.++++.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444555555555555555554444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=0.00014 Score=47.10 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 016681 23 LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILR 102 (384)
Q Consensus 23 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (384)
...+..+...+...|++++|...|+...+... .+...+..+...+...|++++|...+++..... +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44555555556666666666666666555422 244555555555555666666666665555443 3334444444433
Q ss_pred H
Q 016681 103 I 103 (384)
Q Consensus 103 ~ 103 (384)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=6e-05 Score=51.09 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681 57 NEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455566666666677777777776666554 4456666666666666667777766666666543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=0.00017 Score=46.64 Aligned_cols=62 Identities=11% Similarity=0.060 Sum_probs=29.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444455555555555555544433 333444444444555555555555555554443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=0.00012 Score=52.53 Aligned_cols=36 Identities=6% Similarity=-0.071 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
+.+++|.+.++...+.... +...|..+..++...++
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 3444444444444443221 44444444444444433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=0.00016 Score=51.91 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 016681 145 ESALVVYEEMLKRGFSANSFVYTTFIGAYCEY-----------GKIEEANCLMQEMENAGLKPYDETFNLLI 205 (384)
Q Consensus 145 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (384)
++|...|++..+.... +...|..+..+|... |++++|++.|++..+. .|+...|...+
T Consensus 63 ~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3555555555554322 444555555555544 3667777777766663 35544444333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.69 E-value=0.00021 Score=47.44 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 267 NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788888899999999999999999988875 34567888888999999999999999988775
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00046 Score=45.74 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=21.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHH
Q 016681 61 IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKR 118 (384)
Q Consensus 61 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 118 (384)
+..+...+...|++++|+..|++..+.+ +.+...|..+..++...|++++|.+.|++
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333344444444433333332 22233333333333334444444333333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.53 E-value=0.0056 Score=50.64 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 016681 127 DTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 127 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555543 3444444444555555555555555555444
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0087 Score=49.52 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHH
Q 016681 265 SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYE 342 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (384)
+.+...|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+ |...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 4466777777666666788888888888887775 666666666777777888888888887777643 4445543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0039 Score=40.47 Aligned_cols=67 Identities=9% Similarity=-0.049 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 266 PNEITYSHLIGGYAKEGE---IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
.++..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666543333 567777777766654 3345555666666667777777777777776643
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.0022 Score=55.12 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCC-CC-HhHHHHHH
Q 016681 280 KEGEIQEVLKLYYEMEYK---SISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLV-PG-VDIYESLV 345 (384)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~ 345 (384)
..|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|..++++..+ .|.. |+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888876542 12232 34678888889999999999998888764 3322 22 34578888
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 016681 346 GIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 346 ~~~~~~g~~~~a~~~~~~~~~ 366 (384)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999998888764
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.15 E-value=0.0042 Score=40.68 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYPNEA-TIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
...+.+.|++++|...|+...+... .+.. .+..+..++...|++++|...|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666666666666655432 1344 55555666666666666666666655543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0065 Score=52.24 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=64.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCC-CC-HhH
Q 016681 275 IGGYAKEGEIQEVLKLYYEMEYKS---ISPT----LPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLV-PG-VDI 340 (384)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~ 340 (384)
+..+.+.|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|..++++..+ .|.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888876531 2222 34677788888888888888888887754 2322 22 345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 341 YESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 341 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0024 Score=54.82 Aligned_cols=85 Identities=9% Similarity=-0.073 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHc-----CCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHH
Q 016681 142 RNLESALVVYEEMLKR-----GFS--ANSFVYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLLIEG 207 (384)
Q Consensus 142 ~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 207 (384)
|++++|..++++..+. |.. ....+++.+..+|...|++++|+.++++..+. | -.|+ ..+++.+...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666655432 111 12345666666677777777777666665431 2 1122 2456666666
Q ss_pred HHhcCchHHHHHHHHHHHh
Q 016681 208 CAKAKRIEESLSYCEQMMS 226 (384)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~ 226 (384)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777766666543
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.044 Score=51.60 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 103 IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEM 154 (384)
Q Consensus 103 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 154 (384)
....|+++.|+++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666665554322 14455666666666666666666666554
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.98 E-value=0.084 Score=49.68 Aligned_cols=130 Identities=13% Similarity=0.017 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681 167 TTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (384)
..++..+.+.|.++.|.++.++-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555666666666666665542110 0122234556777776664332 2556777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 016681 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
++++.|++.|..+.. |..+...+...++.+...++-+.....| -++....++.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766542 2233333344555555444444444333 2233333444555566655555
Q ss_pred HHH
Q 016681 327 KIM 329 (384)
Q Consensus 327 ~~~ 329 (384)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.97 E-value=0.009 Score=39.04 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=44.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 016681 64 LISALCKGGQLQTYVDMLDRIHGKRCSPMVI-VNTSLILRIIQEERIEEGMVLLKRMLRKNM 124 (384)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 124 (384)
....+...|++++|...|++..+.. +.+.. .+..+..++...|++++|.+.|++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455667788888888888877765 55566 777788888888888888888888877653
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.95 E-value=0.019 Score=37.13 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=42.7
Q ss_pred CCchhhHHHHHHHHhhcCC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 016681 20 SLSLISFNTLIHVVTKSDR---NDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKR 88 (384)
Q Consensus 20 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 88 (384)
+.++..+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|+..|+++....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666544433 56777777777665432 55666666666777777777777777776654
No 220
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.94 E-value=0.013 Score=40.98 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=53.5
Q ss_pred ChhhHHHHHHHHHhcCCh------HHHHHHHHHHHhcCCCCCH-HHHHHHHHHH---H---hcCCHHHHHHHHHHHHhcC
Q 016681 232 SCSAFNEMIRRLCECGNA------KQANGMLTLALDKGFSPNE-ITYSHLIGGY---A---KEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~---~---~~~~~~~a~~~~~~~~~~~ 298 (384)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|...+..+ + ..+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6666666666554 33322 1222222211 1 2355666666666665442
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 016681 299 ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLV 335 (384)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 335 (384)
-.. ...|....+--.++|+...|.+++.+.+..+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 444444444455666666666666666665554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.93 E-value=0.0064 Score=52.27 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=59.5
Q ss_pred HhcCChHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHH
Q 016681 139 VKMRNLESALVVYEEMLKRG---FSA----NSFVYTTFIGAYCEYGKIEEANCLMQEMENA-----G-LKPY-DETFNLL 204 (384)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l 204 (384)
.+.|++++|..++++..+.. +.| ...+++.+..+|...|++++|+.++++..+. | ..|+ ..+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 35677888888887776531 111 2346777788888888888888888776532 2 1222 3567777
Q ss_pred HHHHHhcCchHHHHHHHHHHHh
Q 016681 205 IEGCAKAKRIEESLSYCEQMMS 226 (384)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~ 226 (384)
...|...|++++|..++++..+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 8888888888888888777654
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.0039 Score=44.26 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCChHHH
Q 016681 248 NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG---EIQEVLKLYYEMEYKSISP--TLPAYTSLISSLCQCGKLEEA 322 (384)
Q Consensus 248 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 322 (384)
....+.+.|....+.+. ++..+...+..++++.+ +.+++..+++...+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 35566777777766655 68888888888888888 6668999999888764 34 344555577788999999999
Q ss_pred HHHHHHHhhCC
Q 016681 323 DKYFKIMKSHS 333 (384)
Q Consensus 323 ~~~~~~~~~~~ 333 (384)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998853
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.89 E-value=0.019 Score=40.79 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCCcHHhHHHHHHHHHhhc---chHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 016681 77 YVDMLDRIHGKRCSPMVIVNTSLILRIIQEE---RIEEGMVLLKRMLRKNMIH--DTIAYSLIVYAKVKMRNLESALVVY 151 (384)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 151 (384)
+.+.|.+....+ +++..+...+..++++++ +.++++.+++++.+.+ .| +...+-.+.-++.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344333333 344444444555555544 4445555555555443 11 1223333444455555555555555
Q ss_pred HHHHHc
Q 016681 152 EEMLKR 157 (384)
Q Consensus 152 ~~~~~~ 157 (384)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555554
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.72 E-value=0.031 Score=39.22 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 016681 247 GNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKS 298 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 298 (384)
+++++|.++|+.+.+.+-.- ...|......-.+.|+...|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432221 4444444444445555555555555555544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.69 E-value=0.02 Score=37.95 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENI------RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
++..+-.+...+.+.+++..|..+|+...+.. ..+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455556666666666666666666655431 1123445555555555666666666666555544
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.61 E-value=0.19 Score=39.97 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHh-----cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChH
Q 016681 180 EEANCLMQEMENAGLKPY---DETFNLLIEGCAK-----AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC-GNAK 250 (384)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 250 (384)
..|...+++..+.+ |+ ...|..+...|.+ .|+.++|.+.|++..+.++.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 34444455544432 33 2345555555555 255555555555555544322344444455555542 5555
Q ss_pred HHHHHHHHHHhcCCC
Q 016681 251 QANGMLTLALDKGFS 265 (384)
Q Consensus 251 ~a~~~~~~~~~~~~~ 265 (384)
.+.+.+++.....+.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 555555555554433
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.061 Score=39.24 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=23.7
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 016681 33 VTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 33 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 84 (384)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555554433 24455555555555555555555555543
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.55 E-value=0.099 Score=35.90 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 016681 269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSL 334 (384)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 334 (384)
..+...+..+...|.-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444455555555555555555554332 245555555555555555555555555555555554
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.51 E-value=0.04 Score=43.80 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhh-c
Q 016681 37 DRNDLVWRIYQHMLENIRYPN---EATIRTLISALCKG-----GQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQE-E 107 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 107 (384)
+....|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++.. |
T Consensus 177 ~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 3455666666666664 334 44666666666663 77777777777776664222366666666666663 7
Q ss_pred chHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 016681 108 RIEEGMVLLKRMLRKNMI--HDTIAYSLI 134 (384)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 134 (384)
+.+++.+.+++..+.... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 777777777777776555 554444433
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.50 E-value=0.11 Score=35.73 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 016681 128 TIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGL 194 (384)
Q Consensus 128 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (384)
...+...+..+...|.-+.-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455556666666666666666666433 2345666666666777777777777777766666664
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.41 E-value=0.044 Score=36.26 Aligned_cols=64 Identities=13% Similarity=-0.065 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 269 ITYSHLIGGYAKEGEIQEVLKLYYEMEYKS------ISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
..+..+...+.+.+++..|...|+...+.. -.+....+..+..++.+.|+++.|...++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555555555555555543320 0123344555556666666666666666666553
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.14 E-value=0.78 Score=43.24 Aligned_cols=257 Identities=12% Similarity=0.034 Sum_probs=120.3
Q ss_pred HHccCChHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 016681 68 LCKGGQLQTYVDMLDRIHGKR--CSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNM-------IHDTIAYSLIVYAK 138 (384)
Q Consensus 68 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 138 (384)
....|+.++++.+++.....+ -.+....-..+.-+.+..|..+++.+++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344556666666665544311 012222333333445555555566666666554321 01111122222233
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCc
Q 016681 139 VKMRN-LESALVVYEEMLKRGFSANSF--VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEG--CAKAKR 213 (384)
Q Consensus 139 ~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 213 (384)
+-.|. -+++.+.+..+....- +... .--++...+.-.|+.+....++..+.+.. +......+..+ +...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2344555555444311 0111 11122333445566666666666665432 22233333333 335677
Q ss_pred hHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAF--NEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLY 291 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (384)
.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777777777776531 1121111 223345667778777777777777541 222332333333444456666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 016681 292 YEMEYKSISPTLPAYTSLISSLCQCGKL-EEADKYFKIMKS 331 (384)
Q Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 331 (384)
..+.+.+ .|....-..+.-+....|.. .++...+..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6555543 34433333344444444443 466777777654
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.86 E-value=0.24 Score=33.77 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHhCCCCC--cHHhHHHHHHHHHhhcchHH
Q 016681 37 DRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT---YVDMLDRIHGKRCSP--MVIVNTSLILRIIQEERIEE 111 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 111 (384)
.....+.+-|......|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344455555555544443 566666666666666665544 667777766654 22 33344445556666677777
Q ss_pred HHHHHHHHHHcC
Q 016681 112 GMVLLKRMLRKN 123 (384)
Q Consensus 112 a~~~~~~~~~~~ 123 (384)
|.+.++.+.+..
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 777666666643
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.86 E-value=0.069 Score=36.42 Aligned_cols=86 Identities=13% Similarity=-0.023 Sum_probs=46.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCh
Q 016681 245 ECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE---VLKLYYEMEYKSISP--TLPAYTSLISSLCQCGKL 319 (384)
Q Consensus 245 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 319 (384)
.......+.+.+......|. ++..+--.+..++.+...... ++.++..+.+.+ .| .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33444455555555544433 455555556666666555444 666666665543 12 222333345566666666
Q ss_pred HHHHHHHHHHhhC
Q 016681 320 EEADKYFKIMKSH 332 (384)
Q Consensus 320 ~~a~~~~~~~~~~ 332 (384)
++|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666664
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.35 Score=35.30 Aligned_cols=128 Identities=14% Similarity=0.178 Sum_probs=83.4
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 016681 207 GCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (384)
...+.|+++.|.++.+.+ .+...|..+.......|+++-|++.|....+ +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344568888888877765 2567888888888888888888888876542 3344445556677777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHH
Q 016681 287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEM 364 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 364 (384)
..++-+.....| -++.-...+...|+++++.++|.+... |..-+......|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 666655555544 345555666778888888888865432 111222233456677777777765
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.90 E-value=1.7 Score=37.54 Aligned_cols=188 Identities=13% Similarity=0.094 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHHhc-----CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HccC
Q 016681 2 RLFEVAFDVCRYLEQR-----GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISAL----CKGG 72 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 72 (384)
|++++|++-+-.+.+. ....+......++..|.+.++++...+.+..+.+...+. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 3556666665555422 123345556667777777777777666665554432211 12222222222 1122
Q ss_pred ChHH--HHHHHHHHHh--CC-CCC---cHHhHHHHHHHHHhhcchHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHH
Q 016681 73 QLQT--YVDMLDRIHG--KR-CSP---MVIVNTSLILRIIQEERIEEGMVLLKRMLRK--NMIHD---TIAYSLIVYAKV 139 (384)
Q Consensus 73 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~ 139 (384)
..+. -..+.+.+.. .| +-. .......|...+...|++.+|.+++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2211 1111111110 01 000 1223345566666677777777777766532 11111 233445556666
Q ss_pred hcCChHHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 140 KMRNLESALVVYEEMLKR----GFSAN--SFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
..+++..|..++.++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 677777777666665321 11111 1234455555666666666666665554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.33 Score=44.63 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=79.4
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcc-hHHHHHHHHHHHHc------CCCC-CHH---
Q 016681 62 RTLISALCKGGQ-LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEER-IEEGMVLLKRMLRK------NMIH-DTI--- 129 (384)
Q Consensus 62 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~~--- 129 (384)
..++..+...++ .+.|.++|+++.......+......++..+...++ --+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 57799999998876421222222333333333332 23555666555431 1111 111
Q ss_pred -------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 016681 130 -------AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEM 189 (384)
Q Consensus 130 -------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (384)
....-.+.+...|+++.|+++-++..... +-+-.+|-.|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345667899999999999988762 336789999999999999999999988876
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.22 Score=42.13 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHHHHH
Q 016681 95 VNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLK-----RGFSANSFVYTT 168 (384)
Q Consensus 95 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 168 (384)
+...++..+...|+++++...+..+..... .+...+..++.++.+.|+..+|.+.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445566777788888888888888776643 3777888888888888888888888877654 378887766543
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.43 E-value=0.00019 Score=60.77 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 016681 22 SLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLIL 101 (384)
Q Consensus 22 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 101 (384)
.+..|..+..+..+.++..+|++-|-+. -|+..|..++....+.|.+++-+..+.-.++. ..++.+=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4455666666666666666665544211 24445556666666666666666665544433 223344445666
Q ss_pred HHHhhcchHH
Q 016681 102 RIIQEERIEE 111 (384)
Q Consensus 102 ~~~~~~~~~~ 111 (384)
+|++.++..+
T Consensus 125 ayAk~~rL~e 134 (624)
T 3lvg_A 125 ALAKTNRLAE 134 (624)
T ss_dssp HHHTSCSSST
T ss_pred HHHhhCcHHH
Confidence 6666665443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.37 E-value=0.82 Score=38.64 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHhH
Q 016681 274 LIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS-----HSLVPGVDI 340 (384)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 340 (384)
++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444445555555555555544432 33444555555555555555555555554432 355555444
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.33 Score=44.63 Aligned_cols=50 Identities=6% Similarity=-0.119 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 016681 266 PNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCG 317 (384)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 317 (384)
-+..-|..|.....+.+++++|.+.|+..... +.++..+..|++.|.+.+
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 35556777777777777777777777776654 356677777777777655
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.88 E-value=3.6 Score=37.16 Aligned_cols=287 Identities=9% Similarity=-0.021 Sum_probs=141.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 016681 62 RTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKM 141 (384)
Q Consensus 62 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 141 (384)
...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 4455666777777766654432 2556666667777888888888888877777766643 445677777777766
Q ss_pred CChHH--HHHHHHHHHHcCC-----------CCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh---HHHH
Q 016681 142 RNLES--ALVVYEEMLKRGF-----------SANSF-VYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDET---FNLL 204 (384)
Q Consensus 142 ~~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l 204 (384)
|.+.. ...=++.+...|- .++.. ....++..+. +...+..... . ..++... +...
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVA 221 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHH
Confidence 65433 2222222222211 11110 0111111111 1111111110 0 1122211 1112
Q ss_pred HHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHH----HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681 205 IEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIR----RLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAK 280 (384)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (384)
+.-+.+ .+.+.|...+........ .+......+-. .....+...++...+...... .++.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 222233 366777777777654332 23322222222 222334244555555554433 2344334444444456
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhh------------CCCCC-------C---H
Q 016681 281 EGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKS------------HSLVP-------G---V 338 (384)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~-------~---~ 338 (384)
.|+++.|...|..|...... .....--+.+++...|+.++|..+|+.+.+ .|..+ + .
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~ 376 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred CCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHH
Confidence 78888888888777543211 122223355666777888888887776532 12110 0 0
Q ss_pred h-----HHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 339 D-----IYESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 339 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
. .-..-+..+...|....|...+..+.+.
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 0 0112244566778888888877777653
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.26 E-value=1 Score=29.05 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+- .+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444566666666666777777777777777777777777777777766532 22334565554
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.09 E-value=6.2 Score=38.82 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 016681 131 YSLIVYAKVKMRNLESALVVYEEMLKRGFSAN----SFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIE 206 (384)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (384)
|..++..+.+.+.++.+.+.-....+....-+ ...|..+.+.+...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 44555555566666666655554444321111 113555666666666666666666555544322 233444444
Q ss_pred HHHhcC
Q 016681 207 GCAKAK 212 (384)
Q Consensus 207 ~~~~~~ 212 (384)
.++..+
T Consensus 980 ~lce~~ 985 (1139)
T 4fhn_B 980 QLTKQG 985 (1139)
T ss_dssp HHHHHC
T ss_pred HHHhCC
Confidence 444433
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.08 E-value=3.9 Score=35.24 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=100.2
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hc
Q 016681 141 MRNLESALVVYEEMLKR-----GFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCA----KA 211 (384)
Q Consensus 141 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 211 (384)
.++++.|.+.+-.+.+. ...........++..|...++++...+.+..+.+..-.. ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777666542 233356667788888899999988888777665432222 122333333322 22
Q ss_pred CchHH--HHHHHHHHHh---CCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---HHHHHHHHHHH
Q 016681 212 KRIEE--SLSYCEQMMS---RKLLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDK--GFSPN---EITYSHLIGGY 278 (384)
Q Consensus 212 ~~~~~--a~~~~~~~~~---~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 278 (384)
...+. -..+.+.+.. ..+... ......+...+...|++.+|..++..+... +.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111111 011111 122345666777778888888777776532 22111 23455566677
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHh
Q 016681 279 AKEGEIQEVLKLYYEMEYK----SISPT--LPAYTSLISSLCQCGKLEEADKYFKIMK 330 (384)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 330 (384)
...+++.+|..++.++... ...|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777777777765321 11111 1234445555666677776666655443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.92 E-value=0.85 Score=31.30 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 016681 264 FSPNEITYSHLIGGYAKEGEI---QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH 332 (384)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 332 (384)
..|+..+--.+..++.+.... .+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 345555555555555555443 356666666665441112334444556666777777777777776664
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.56 E-value=7.3 Score=36.97 Aligned_cols=151 Identities=10% Similarity=0.002 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCchH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFI--GAYCEYGKIEEANCLMQEMENAGLKPYDETFN--LLIEGCAKAKRIE 215 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 215 (384)
-.|+-+....++..+.+.. +..+...+. -++...|+.+.+..+++.+.... .|....-. ++.-+|+..|+..
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH
Confidence 4455555555555544421 222222222 22334566666666666655432 12211111 2223445555655
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEI-QEVLKLYYEM 294 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 294 (384)
...++++.+.... ..+..-...+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++.+++..+
T Consensus 578 aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 578 AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 5555666655431 1122222222223333555555555555444432 23333223333333333332 4555566665
Q ss_pred Hh
Q 016681 295 EY 296 (384)
Q Consensus 295 ~~ 296 (384)
..
T Consensus 656 ~~ 657 (963)
T 4ady_A 656 TK 657 (963)
T ss_dssp HT
T ss_pred cc
Confidence 53
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.51 E-value=1.9 Score=30.06 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 016681 264 FSPNEITYSHLIGGYAKEGEI---QEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHS 333 (384)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 333 (384)
..|+..+--.+..++.++... .+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 356777766677777766554 4677788777765422233344446667888888888888888888754
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.31 E-value=0.00023 Score=60.33 Aligned_cols=264 Identities=13% Similarity=0.076 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
+..|..|..+....+++.+|++.|-+ ..|+..|..++....+.|.+++-.+.+...++..-. +..=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHHH
Confidence 34555666666666666555444311 234555666666666666666666665555444222 2233455566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHH
Q 016681 138 KVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEES 217 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 217 (384)
|++.++..+.++.+ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 66666655433322 123444455556666666666666555543321 22223333444444444
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 016681 218 LSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYK 297 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 297 (384)
.+.-+ -.-++.||..+-.+|...+.+.-|.-.--.+.-. +.....++..|...|.+++.+.+++.....
T Consensus 190 VdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 32111 1125567777777777777666555443333321 112233455566667777777666665533
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhC-CCC------CCHhHHHHHHHHHhccCCHHHHH
Q 016681 298 SISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSH-SLV------PGVDIYESLVGIHLEKGNKAKAL 358 (384)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 358 (384)
. +.....|+-|.-.|++- ++++..+.++..-.+ +++ -....|..++-.|.+-.+++.|.
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 34555666666666553 345444444432221 110 02233556666666666665543
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.94 E-value=6.9 Score=35.34 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=166.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
|..... ..+.|++..+..+...+...-+ ..-..|..+...+ ......+....+.+-.. .+.....-+.-+..+.+
T Consensus 10 ~~~a~~-a~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQ-AWDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHH-HHHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence 333333 3456777777776555432211 1122343333222 12245555555444221 12223333445566667
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH--HH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEE--AN 183 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~ 183 (384)
.+++...+.++.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+.|.... ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHH
Confidence 7777766654432 2234444445666777889988888877777666533 56678888888887776433 33
Q ss_pred HHHHHHHHcC-----------CCCChhhH-HHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCC
Q 016681 184 CLMQEMENAG-----------LKPYDETF-NLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS---AFNEMIRRLCECGN 248 (384)
Q Consensus 184 ~~~~~~~~~~-----------~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 248 (384)
.-++.+...| +.++.... ..++... .++..+...... ..++.. .+...+.-+.+ .+
T Consensus 159 ~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 159 ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cC
Confidence 3333333332 11221111 1111111 112222222111 112222 12222333333 37
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681 249 AKQANGMLTLALDKGFSPNEITYSHLI----GGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADK 324 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 324 (384)
.+.|...+....+... .+......+- ......+...++...+....... ++.......+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999988865432 2433333332 23334453556666666654432 344444445555567899999999
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 325 YFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
.|+.|...... ...-.--+.+++...|+.++|..+|+.+..
T Consensus 307 ~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998763222 333344566778889999999999999864
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.92 E-value=1.6 Score=28.14 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
.-+..+-++.+...+..|++.+..+.+++|-+.+++..|.++|+.+..+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 34455555666666666666666666666666666666666666665442 222334554443
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.80 E-value=2.1 Score=29.32 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHH
Q 016681 283 EIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLV 345 (384)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 345 (384)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34456666667777777888888888888888888888888888877664 223345566655
No 253
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.71 E-value=1.7 Score=27.92 Aligned_cols=78 Identities=14% Similarity=0.023 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK 117 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 117 (384)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-.|-. .+.|--+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655422 22222222344566677777766655433 566666655543 34555556655555
Q ss_pred HHHHcC
Q 016681 118 RMLRKN 123 (384)
Q Consensus 118 ~~~~~~ 123 (384)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.95 E-value=2.7 Score=28.82 Aligned_cols=68 Identities=10% Similarity=-0.028 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 55 YPNEATIRTLISALCKGGQL---QTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.|+..+-..+..++.+..+. .+++.+++.+.+.+.......+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555544445555544432 345555555554431112334444445555555555555555555543
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.91 E-value=6.9 Score=38.53 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=96.5
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---------------
Q 016681 203 LLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDK----G--------------- 263 (384)
Q Consensus 203 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--------------- 263 (384)
.++..+...+..+-+.++..... .++..--.+..++...|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34555666666666655443322 23333445667888999999999999764321 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 264 ---FSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL----PAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 264 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
...-..-|..++..+.+.+.++.+.++-....+..-..+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0011234677888888899999998888777654322121 2577888999999999999999988776543
Q ss_pred CHhHHHHHHHHHhccCCHHH
Q 016681 337 GVDIYESLVGIHLEKGNKAK 356 (384)
Q Consensus 337 ~~~~~~~l~~~~~~~g~~~~ 356 (384)
-......|+...+..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667777777777666544
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.67 E-value=1.6 Score=27.97 Aligned_cols=78 Identities=14% Similarity=-0.053 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHH
Q 016681 38 RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLK 117 (384)
Q Consensus 38 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 117 (384)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+... .||...|-.|-. .+.|--+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666655432 22222222345566777777766654433 566666655543 35566666666666
Q ss_pred HHHHcC
Q 016681 118 RMLRKN 123 (384)
Q Consensus 118 ~~~~~~ 123 (384)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666655
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.71 E-value=3.6 Score=28.25 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 215 EESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
-+..+-++.+...+..|++....+.+++|-+.+|+..|.++|+.+..+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3445555555566666666666666666666666666666666665442 223334554443
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.88 E-value=2.4 Score=30.41 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCChh
Q 016681 235 AFNEMIRRLCECGNAKQANGMLTLALDKG-FSPNE-------ITYSHLIGGYAKEGEIQEVLKLYYEMEYK--SISPTLP 304 (384)
Q Consensus 235 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 304 (384)
++..-++.+...+.++.|+-+...+.... ..|+. .++..+.+++...+++.+|...|++..+. .+.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445666677777777776666544321 12221 24455566667777777777777765332 1111111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 016681 305 AYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMV 365 (384)
Q Consensus 305 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 365 (384)
+...+. ....... .....++.+.--.+..+|.+.|++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111110 0000000 00112233444457788889999999998887653
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.60 E-value=5.9 Score=33.94 Aligned_cols=98 Identities=10% Similarity=-0.084 Sum_probs=54.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHc---CCCCCHHHHH--
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGK--RCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRK---NMIHDTIAYS-- 132 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~-- 132 (384)
+...+...+.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+.... +..|+.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4555666667777777777777766543 22333556666667777777777777776665432 2222211100
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKR 157 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~ 157 (384)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 0111233456777777777665443
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.46 E-value=11 Score=32.28 Aligned_cols=98 Identities=10% Similarity=-0.140 Sum_probs=65.2
Q ss_pred HhHHHHHHHHHhhcchHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHHHHH--
Q 016681 94 IVNTSLILRIIQEERIEEGMVLLKRMLRKNM--IHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRG-FSANSFVYTT-- 168 (384)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~-- 168 (384)
.+...+...|.+.|+++.|.+.+.++...-. ..-...+-.+++.+...+++..+...+.++...- -.++....+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4667788888999999999999998887432 2234566777888888899999988888875431 1112222211
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHH
Q 016681 169 --FIGAYCEYGKIEEANCLMQEMEN 191 (384)
Q Consensus 169 --l~~~~~~~~~~~~a~~~~~~~~~ 191 (384)
-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11223456788888887776654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.33 E-value=8.7 Score=30.18 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 31 HVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
..+.+.|++++++.....-++..+ -|...-..++..+|-.|+++.|..-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445677788888877777776643 36777777788888888888888777777665
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.97 E-value=4 Score=32.04 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=71.7
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 016681 66 SALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI--HDTIAYSLIVYAKVKMRN 143 (384)
Q Consensus 66 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~ 143 (384)
..+.+.|+++++++....-.+.. |.|...-..++..++-.|++++|.+-++...+.... |....|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567888899988888877776 778888888899999999999998888888775422 122234434332
Q ss_pred hHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 016681 144 LESALVVYEEMLKRGFSA-----NSFVYTTFIGAY--CEYGKIEEANCLMQEMENA 192 (384)
Q Consensus 144 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 192 (384)
+..=.+...-+-.| ...-...++.+. ...|+.++|..+-..+.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222221111 222333444443 3458888888887777553
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.23 E-value=9.5 Score=27.39 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 016681 132 SLIVYAKVKMRNLESALVVYEEM 154 (384)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~~ 154 (384)
..+.+++...+++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444555555555555555554
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=82.98 E-value=11 Score=29.51 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.3
Q ss_pred HHHHhCCCCCCc
Q 016681 362 EEMVSEGLKPST 373 (384)
Q Consensus 362 ~~~~~~~~~p~~ 373 (384)
+-+.+.|..|+.
T Consensus 270 ~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 270 ELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHSSCSCC
T ss_pred HHHHHcCCCCCc
Confidence 333444554443
No 265
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=79.32 E-value=19 Score=30.84 Aligned_cols=91 Identities=7% Similarity=-0.085 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 016681 58 EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYA 137 (384)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 137 (384)
...|..-...+...|++++|..+--..++ |+-.+..+.+.+-..-...|...--+.+|..+.+.|- .+..----+++.
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~~ESlEl~r~ 438 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLELCRP 438 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cchHHhhHHhHH
Confidence 44444445555555666655555443322 1233344443333333333444444445555444442 233222233344
Q ss_pred HHhcCChHHHHHH
Q 016681 138 KVKMRNLESALVV 150 (384)
Q Consensus 138 ~~~~~~~~~a~~~ 150 (384)
-...|+.+-.+++
T Consensus 439 vL~q~r~~llekW 451 (494)
T 1bpo_A 439 VLQQGRKQLLEKW 451 (494)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHH
Confidence 4444444444433
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.85 E-value=16 Score=28.59 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 016681 98 SLILRIIQEERIEEGMVLLKRMLRKNMIHDTI---AYSLIVYAKVKMRNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 98 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 161 (384)
+.+...++.|+.+.+. .+.+.|..++.. .-...+...+..|+.+-+ +.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~ 65 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC
Confidence 3444556667665443 344445443321 111234445556665433 3444445443
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.66 E-value=25 Score=28.49 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCChHHHHHHHHH
Q 016681 97 TSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVV----YEEMLKRGFSANSFVYTTFIGA 172 (384)
Q Consensus 97 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~ 172 (384)
.++..-|.+.+++++|++++..-. ..+.+.|+...|-++ .+-+.+.+.+++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344455666677777766554421 123444555544443 4444555677777776666666
Q ss_pred HHhcCCHH-HHHHHHHHHHH----cC--CCCChhhHHHHHHHHHhcCchHHHHHHH
Q 016681 173 YCEYGKIE-EANCLMQEMEN----AG--LKPYDETFNLLIEGCAKAKRIEESLSYC 221 (384)
Q Consensus 173 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 221 (384)
+.....-+ .-.++++++.+ .| ..-+......+...|.+.+++.+|...|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 65533211 11233333322 21 1123344555555556655555554444
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.73 E-value=19 Score=26.78 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=39.3
Q ss_pred cCChHHHHHHHHHHHhCCCCC-cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC
Q 016681 71 GGQLQTYVDMLDRIHGKRCSP-MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHD 127 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 127 (384)
.+...++.++|..|...++-. -...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667777777777665433 355667777777777888888888887777766663
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.76 E-value=31 Score=28.59 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 016681 201 FNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGN--AKQANGMLTLALDKGFSPNEITYSHLIGGY 278 (384)
Q Consensus 201 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (384)
...++.-|...++.++|...++++...... ...+...+..++-+.++ .+....++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 455566666666666666666666432111 12233333334333222 334556666666655554444444444443
Q ss_pred H
Q 016681 279 A 279 (384)
Q Consensus 279 ~ 279 (384)
.
T Consensus 299 ~ 299 (358)
T 3eiq_C 299 N 299 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.10 E-value=34 Score=28.31 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCC
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE--IQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 300 (384)
...++.-|...++.++|...++++...... .......+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 466677777778888888888777532111 22334444445544332 34566777777666543
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.18 E-value=15 Score=23.70 Aligned_cols=19 Identities=5% Similarity=0.050 Sum_probs=8.4
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 016681 175 EYGKIEEANCLMQEMENAG 193 (384)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~ 193 (384)
+.|-.+++...+.++..+|
T Consensus 80 rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HTTCHHHHHHHHHHHHTCS
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 3444444444444444443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.28 E-value=16 Score=23.61 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=5.5
Q ss_pred HHhcCChHHHHHH
Q 016681 138 KVKMRNLESALVV 150 (384)
Q Consensus 138 ~~~~~~~~~a~~~ 150 (384)
+...|++++|..+
T Consensus 50 LmNrG~Yq~Al~l 62 (116)
T 2p58_C 50 LMNRGDYASALQQ 62 (116)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHcchhHHHHHHh
Confidence 3344444444433
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.11 E-value=21 Score=24.90 Aligned_cols=69 Identities=10% Similarity=-0.045 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 016681 55 YPNEATIRTLISALCKGGQ---LQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 55 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 123 (384)
.|+..+-..+..++.+..+ ..+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4555555555556665543 33566666666654322234444455556667777777777777776653
No 274
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=71.51 E-value=46 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCCchhh--HHHHHHHHhhcCChhHHHHHH
Q 016681 9 DVCRYLEQRGFSLSLIS--FNTLIHVVTKSDRNDLVWRIY 46 (384)
Q Consensus 9 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 46 (384)
++++.+.+.|..++... ..+.+...+..|+.+-+..++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45566666665554321 123444555666655444444
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.83 E-value=47 Score=27.99 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 133 LIVYAKVKMRNLESALVVYEEMLKRGFSAN-----SFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
.++..|...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345556666666666666665554311111 1223344455666666666666665553
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.86 E-value=21 Score=28.25 Aligned_cols=204 Identities=11% Similarity=0.027 Sum_probs=100.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHh
Q 016681 29 LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPM---VIVNTSLILRIIQ 105 (384)
Q Consensus 29 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 105 (384)
.+...+..|+.+.+..+++. |..++...-.+.+...+..|+.+-+..+++ .|..++ ..-++. +...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcH-HHHHHH
Confidence 45555667877666555543 433322111234445567787776555544 343332 222233 334455
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-HHHHHHHHHHhcCCHHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTI---AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSF-VYTTFIGAYCEYGKIEE 181 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 181 (384)
.|+.+-+.- +.+.|..++.. -+...+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 676654444 34445443321 212344555667776544 4445555433221 33445566667888877
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 016681 182 ANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLA 259 (384)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 259 (384)
+.-+++.-..... .+..-.+..+...+..|+. ++.+.+.+.|..++..... -...|+.+-+.-+++.-
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHcC
Confidence 7666665433221 1212222223333445553 4556667777776655432 14466665555555443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.04 E-value=41 Score=26.58 Aligned_cols=201 Identities=8% Similarity=-0.008 Sum_probs=96.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHh
Q 016681 134 IVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYD---ETFNLLIEGCAK 210 (384)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 210 (384)
.+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+ .+.|..++. .-.+.+ ...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L-~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTAL-YYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHH-HHHHH
Confidence 344556678776555444 444433332223344555666776544443 445544432 223333 33445
Q ss_pred cCchHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 016681 211 AKRIEESLSYCEQMMSRKLLPS---CSAFNEMIRRLCECGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQE 286 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 286 (384)
.|+.+-+..+++. |..++ ...+...+...+..|+.+- .+.+.+.|..+ +...-...+...+..|..+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6666555444443 33332 2222234444556676544 44444544433 22122334444556788777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHH
Q 016681 287 VLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLC 361 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 361 (384)
+..+++.-...+. .+..-.+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-++
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll 241 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMII 241 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHH
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHH
Confidence 7666665444332 2222333323334455654 455566677776665542 123456554444333
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.10 E-value=39 Score=26.00 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=13.4
Q ss_pred HHHHhhcCChhHHHHHHHHHHh
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLE 51 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~ 51 (384)
++.+...+++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666666666666665543
No 279
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=67.61 E-value=28 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=18.4
Q ss_pred HHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 205 IEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 205 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
+..+...+.+-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3333333344444555555544444444444443444444333
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.93 E-value=51 Score=26.96 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=91.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHH----HHHHHHHHcCCCCCHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGM----VLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~ll 135 (384)
+|.++..-|.+.+++++|++++-.-. ..+.+.|+...|- -+++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44555566777888888887765432 1233444443333 3345555667777777777777
Q ss_pred HHHHhcCChH-HHHHHHHHHH----HcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016681 136 YAKVKMRNLE-SALVVYEEML----KRG--FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGC 208 (384)
Q Consensus 136 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (384)
..+.....-+ .=..+.+.+. +.| ..-++.....+...|.+.+++.+|+..|- .|-.++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7666544311 1122333332 222 33466777778888888888888887762 23234445665555444
Q ss_pred HhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 209 AKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
.+.+...++ +...-. .+--|...++...|..+++...
T Consensus 178 ~~~~~~~e~--------------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTA--------------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGH--------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccH--------------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 443332111 122222 2333556677888877665554
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=66.11 E-value=51 Score=26.61 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCC
Q 016681 236 FNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGE--IQEVLKLYYEMEYKSIS 300 (384)
Q Consensus 236 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 300 (384)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 345666677777888887777777532111 12333344444444322 34566677776665543
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.89 E-value=40 Score=24.97 Aligned_cols=172 Identities=15% Similarity=-0.030 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 016681 56 PNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 56 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 135 (384)
++...-...+..+.+.+..+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444445555544422 2222323332 234444444455555555432 2233333322 23444555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchH
Q 016681 136 YAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIE 215 (384)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 215 (384)
.++.+.++.+.... +..+.+ .++..+-...+.++.+.++.+ +...+..+.+ .++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHHHHHH-HHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 55555555433222 222222 235555555555665555533 3333333332 2444555555556665554 3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 216 ESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
.+...+..+.+. ++..+-...+.++...+
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 344444444432 24444444455544433
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.49 E-value=60 Score=26.56 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=45.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 016681 231 PSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLI 310 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 310 (384)
-|+.....+...|.+.+++.+|+..|- . |-.++...+..++.-+...+...+ ++...-..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 366777788888888888888887762 1 333334566555554444332211 1222222233
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 016681 311 SSLCQCGKLEEADKYFKIMK 330 (384)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~ 330 (384)
-|.-.++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 2344567777777665554
No 284
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.17 E-value=35 Score=23.75 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=34.3
Q ss_pred HHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 13 YLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 35556665444333 3445555555666677777777666555566555555566665553
No 285
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=63.02 E-value=10 Score=29.39 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=8.7
Q ss_pred HhcCChHHHHHHHHHHh
Q 016681 314 CQCGKLEEADKYFKIMK 330 (384)
Q Consensus 314 ~~~g~~~~a~~~~~~~~ 330 (384)
++.|+.+-+..++++-.
T Consensus 233 ~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 233 AKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 34455555555555443
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.54 E-value=36 Score=24.78 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=7.7
Q ss_pred HHHHHHHhhCCCCCC
Q 016681 323 DKYFKIMKSHSLVPG 337 (384)
Q Consensus 323 ~~~~~~~~~~~~~~~ 337 (384)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555554443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.47 E-value=38 Score=23.91 Aligned_cols=72 Identities=4% Similarity=-0.010 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCH
Q 016681 54 RYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSP-MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDT 128 (384)
Q Consensus 54 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 128 (384)
.+-|+.-...-+.. +.. .+++.++|..|...++-. -...|..-...+-..|++.+|.++|+.-++.+-.|-.
T Consensus 64 YknD~RyLklWl~y-a~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 64 YHNDPRFISYCLKF-AEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GTTCHHHHHHHHHH-HTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCCHHHHHHHHHH-HHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34455544444432 222 244788999988877544 4667888888888999999999999999988877744
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.14 E-value=82 Score=27.65 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=12.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHH
Q 016681 25 SFNTLIHVVTKSDRNDLVWRIYQHM 49 (384)
Q Consensus 25 ~~~~l~~~~~~~~~~~~a~~~~~~~ 49 (384)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3455555555555555555555443
No 289
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=61.80 E-value=31 Score=23.72 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 016681 249 AKQANGMLTLALDKGFSPNEITYSHLIGGYAKEG 282 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (384)
.-.|.++++.+.+.++..+..|.-.-+..+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433334443333344444333
No 290
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=61.32 E-value=28 Score=24.28 Aligned_cols=33 Identities=9% Similarity=-0.110 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 016681 214 IEESLSYCEQMMSRKLLPSCSAFNEMIRRLCEC 246 (384)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (384)
+-.|.++++.+.+.++..+..|...-+..+...
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 344444444444444443443433333333333
No 291
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.09 E-value=25 Score=21.39 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHhcCCCCchhhHHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 13 YLEQRGFSLSLISFNTLIHVVTKSD-RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666655544 34555665554 556677777777666555566666666666666553
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.69 E-value=34 Score=24.06 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcC-chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 016681 189 MENAGLKPYDETFNLLIEGCAKAK-RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 247 (384)
+.+.|+.++. .-..++..+...+ .+-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444432 2223333333333 34455555555555544444444444444444444
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.60 E-value=14 Score=28.67 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=14.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 016681 344 LVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 344 l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
-+...++.|+.+-+.-++++-..
T Consensus 228 pL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 228 PLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC
Confidence 34445677888777777766543
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=60.39 E-value=38 Score=23.24 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHHhcCCCCchhhHHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 13 YLEQRGFSLSLISFNTLIHVVTKSD-RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35556666544433 3445555555 5667777777777666555666655555666655543
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.15 E-value=53 Score=24.75 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 016681 137 AKVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~ 158 (384)
..++.|+.+.+..+++.+.+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3344455555554444444443
No 296
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.92 E-value=18 Score=27.45 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcH
Q 016681 40 DLVWRIYQHMLENIRYPN-EATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMV 93 (384)
Q Consensus 40 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 93 (384)
+.+.++|..|...|+.-. ...|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 578899999999876544 567888888899999999999999998887756643
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.48 E-value=43 Score=23.51 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=32.8
Q ss_pred HHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 13 YLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3455665543332 33455555555666677777777666555565555555555555553
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=59.26 E-value=43 Score=23.49 Aligned_cols=62 Identities=13% Similarity=0.285 Sum_probs=39.8
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 12 RYLEQRGFSLSLISFNTLIHVVTKSD-RNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667776555443 3455565555 6777888888887776666666666666666666644
No 299
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=59.14 E-value=70 Score=25.88 Aligned_cols=167 Identities=14% Similarity=0.047 Sum_probs=94.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHH----HHHHHHHcCCCCCHHHHHHHH
Q 016681 60 TIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMV----LLKRMLRKNMIHDTIAYSLIV 135 (384)
Q Consensus 60 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll 135 (384)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +++.+.+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55566666777788888877765432 23344455444433 455566677888888877777
Q ss_pred HHHHhcCChH-HHHHHHHHHH----HcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016681 136 YAKVKMRNLE-SALVVYEEML----KRG--FSANSFVYTTFIGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGC 208 (384)
Q Consensus 136 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (384)
..+.....-+ .=.++++.+. +.| ..-++.....+...|.+.|++.+|...|-. |-.-|...+..++--+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 7765533211 1233333333 232 223677788888999999999988876631 1111234455555444
Q ss_pred Hhc---CchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 209 AKA---KRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 209 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
.+. |...++ +...-. .+--|...++...|..+++...
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 443 333221 111112 2223456778888888877654
No 300
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.98 E-value=35 Score=23.82 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 016681 12 RYLEQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ 73 (384)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (384)
+.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34556666655443 33445555555 66777777777766655566665555566665553
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.94 E-value=55 Score=24.62 Aligned_cols=26 Identities=4% Similarity=-0.096 Sum_probs=13.8
Q ss_pred HHHHhhcchHHHHHHHHHHHHcCCCC
Q 016681 101 LRIIQEERIEEGMVLLKRMLRKNMIH 126 (384)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 126 (384)
...+..|+.+.+..+++.+.+.+..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 34445566666555555555554433
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.88 E-value=47 Score=23.46 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 287 VLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 287 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6667777766655332 3345566666667777777777777777766665
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=57.51 E-value=74 Score=25.67 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHH
Q 016681 253 NGMLTLALDKGFSPNE---ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT---LPAYTSLISSLCQCGKLEEADKYF 326 (384)
Q Consensus 253 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~ 326 (384)
..+.+.+.+.|..++. .-.+. +...+..|..+.+..++.. .|..++ ..-.+.|..+ ++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HH
Confidence 3444555666655432 22223 3334566776655544421 233222 2223344433 4556654 34
Q ss_pred HHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 327 KIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
+.+.+.|..++..+ .+...++.|+.+ +.+-+++.|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 45566676666554 333445666653 45566777766653
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.51 E-value=45 Score=23.78 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=26.5
Q ss_pred HhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHccC
Q 016681 15 EQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLEN--IRYPNEATIRTLISALCKGG 72 (384)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 72 (384)
.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3445444332 233444444445555555555555554 44444444433444444444
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.42 E-value=26 Score=26.39 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=9.1
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 016681 345 VGIHLEKGNKAKALHLCEE 363 (384)
Q Consensus 345 ~~~~~~~g~~~~a~~~~~~ 363 (384)
+....+.|+.+-+.-+++.
T Consensus 214 l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHh
Confidence 3344555665544444443
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.02 E-value=41 Score=25.24 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=23.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 016681 275 IGGYAKEGEIQEVLKLYYEMEYKSISPTLPAY--TSLISSLCQCGKLEEADKYFKIMKS 331 (384)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 331 (384)
+...+..|+.+-+..++ +.|..++.... ..-+....+.|+.+-+..+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 33344556665444433 33444432211 1233344556666665555554333
No 307
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=56.92 E-value=84 Score=26.11 Aligned_cols=213 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 016681 97 TSLILRIIQEERIEEGMVLLKRMLRKN-MIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCE 175 (384)
Q Consensus 97 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (384)
..++.-|...|+.++|...++++.... ..|...........=.+....+.+-.++..+...++-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cCC----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----
Q 016681 176 YGK----IEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECG---- 247 (384)
Q Consensus 176 ~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 247 (384)
..+ ...|..++..+...-+.-+..+.+.+...+...+...-...++..+.+..-. ..+...+.+.|
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~------~~l~~l~~~sgl~l~ 169 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDR------EWLTELFQQSKVNMQ 169 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCH------HHHHHHHHHHTCCSG
T ss_pred ChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCH------HHHHHHHHHcCCCHH
Q ss_pred --------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 016681 248 --------NAKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQ 315 (384)
Q Consensus 248 --------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 315 (384)
..+...+.++.---..+.|-...-..|...+......++..+..+.-......++.....+++.+.++
T Consensus 170 ~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~ 245 (364)
T 3l6a_A 170 KMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQ 245 (364)
T ss_dssp GGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHH
No 308
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.06 E-value=61 Score=24.19 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=34.9
Q ss_pred cCChHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 016681 246 CGNAKQANGMLTLALDKGFSP-NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISP 301 (384)
Q Consensus 246 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 301 (384)
.+....+..+|..|..+|+-. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334556667777776665532 34456666666666777777777777766665555
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.03 E-value=46 Score=23.78 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=18.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC
Q 016681 204 LIEGCAKAKRIEESLSYCEQMMSR--KLLPSCSAFNEMIRRLCECG 247 (384)
Q Consensus 204 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 247 (384)
++..+...+.+-.|.++++.+.+. ++..+..|...-+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444444444444443 33333333333333344333
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=55.57 E-value=64 Score=24.31 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=50.1
Q ss_pred hHHHHHHHHhh--cCChhHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHc--cC--------------ChHHHHHHHHHH
Q 016681 25 SFNTLIHVVTK--SDRNDLVWRIYQHMLENIRYPNEATIR--TLISALCK--GG--------------QLQTYVDMLDRI 84 (384)
Q Consensus 25 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~--~~--------------~~~~a~~~~~~~ 84 (384)
.+..+.+++.. .+++.+-+.+++.++..+..-...... .++..+.+ .| -++.|+.+|+.+
T Consensus 19 yf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I 98 (235)
T 3bu8_A 19 YFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMI 98 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHH
Confidence 34455555543 345666777777666554443332211 11111111 12 146677777777
Q ss_pred HhCCCCCcH--HhH-----HHHHHHHHhhcchHHHHHHHHHHHHc
Q 016681 85 HGKRCSPMV--IVN-----TSLILRIIQEERIEEGMVLLKRMLRK 122 (384)
Q Consensus 85 ~~~~~~~~~--~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 122 (384)
.+....++. ... -..+..|.+.|.+++|.+++++....
T Consensus 99 ~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 99 KTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 655411111 111 12344567788888888888887665
No 311
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=54.76 E-value=63 Score=24.27 Aligned_cols=53 Identities=8% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHhH--HHHHHHHHhccCCHHHHHHHHHHHHhC
Q 016681 311 SSLCQCGKLEEADKYFKIMKSHSLVPGVDI--YESLVGIHLEKGNKAKALHLCEEMVSE 367 (384)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~ 367 (384)
...++.|+.+-+ +.+.+.|..++... -.+.+......|+...+.++.+.+.++
T Consensus 182 ~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 182 HIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455665544 33344444433211 123444556778888888888877653
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.20 E-value=12 Score=21.36 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHhcC-CCCch
Q 016681 3 LFEVAFDVCRYLEQRG-FSLSL 23 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~-~~~~~ 23 (384)
+++.|...|..+...| ++|++
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHH
Confidence 6788888888886543 55544
No 313
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=53.05 E-value=56 Score=22.90 Aligned_cols=58 Identities=3% Similarity=-0.043 Sum_probs=25.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 016681 119 MLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYG 177 (384)
Q Consensus 119 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (384)
+.+.|..++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4445544322 333344444444455556666666655544444444433444444433
No 314
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.07 E-value=63 Score=23.17 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 016681 265 SPNEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPG 337 (384)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 337 (384)
.-|+.....-+..--.. +...++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34555444444322222 336678888888876443 34567777778888999999999999888877773
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.83 E-value=93 Score=25.10 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCC
Q 016681 306 YTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGN--KAKALHLCEEMVSEGLKP 371 (384)
Q Consensus 306 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p 371 (384)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 356788888999999999999988642111 12233444445555433 355778888887766544
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=51.63 E-value=66 Score=23.31 Aligned_cols=15 Identities=0% Similarity=-0.086 Sum_probs=7.7
Q ss_pred HHHHHHHHhcCCCCC
Q 016681 288 LKLYYEMEYKSISPT 302 (384)
Q Consensus 288 ~~~~~~~~~~~~~~~ 302 (384)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.55 E-value=1e+02 Score=25.23 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=9.8
Q ss_pred HHHHHHccCChHHHHHHHHHH
Q 016681 64 LISALCKGGQLQTYVDMLDRI 84 (384)
Q Consensus 64 l~~~~~~~~~~~~a~~~~~~~ 84 (384)
++.-|...|+.++|...++++
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 344444445555554444443
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.50 E-value=40 Score=20.45 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccC
Q 016681 294 MEYKSISPTLPAYTSLISSLCQCG-KLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKG 352 (384)
Q Consensus 294 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 352 (384)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445555554433 23444444443 44556666666666554445555555555554444
No 319
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=49.37 E-value=30 Score=18.75 Aligned_cols=18 Identities=11% Similarity=0.205 Sum_probs=11.0
Q ss_pred cchHHHHHHHHHHHhcCC
Q 016681 2 RLFEVAFDVCRYLEQRGF 19 (384)
Q Consensus 2 ~~~~~A~~~~~~~~~~~~ 19 (384)
++..+|+++++.+.+.|-
T Consensus 7 RDv~RaiELle~lq~sge 24 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGE 24 (53)
T ss_dssp HHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 355666666666666653
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.15 E-value=40 Score=25.60 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 016681 285 QEVLKLYYEMEYKSISPT-LPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVP 336 (384)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 336 (384)
+...++|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467789999988876443 4467778888889999999999999998887777
No 321
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.62 E-value=93 Score=23.89 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=19.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 016681 231 PSCSAFNEMIRRLCECGNAKQANGMLTLAL 260 (384)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 260 (384)
++.......+..+.+.|+.++|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 345555666677777777777777765443
No 322
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=46.91 E-value=18 Score=20.59 Aligned_cols=30 Identities=17% Similarity=-0.042 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 016681 4 FEVAFDVCRYLEQRGFSLSLISFNTLIHVV 33 (384)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 33 (384)
.++|.+.|-.|++..-.++..+|...|+.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356666666665443334566666666666
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.36 E-value=75 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=9.5
Q ss_pred HHHHHHhhcchHHHHHHHHHH
Q 016681 99 LILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 99 l~~~~~~~~~~~~a~~~~~~~ 119 (384)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 324
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.68 E-value=51 Score=22.39 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=30.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45555656666777778888777766656666666666666666643
No 325
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.47 E-value=1.4e+02 Score=25.20 Aligned_cols=159 Identities=13% Similarity=0.016 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCchHHHHHHHHHHHhC--CCCCChhhHHHH-
Q 016681 168 TFIGAYCEYGKIEEANCLMQEMENAGLKPY-----DETFNLLIEGCAKAKRIEESLSYCEQMMSR--KLLPSCSAFNEM- 239 (384)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 239 (384)
.++..|...|++.+|.+++..+.+.=-..| ...+..-+..|...++..++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578999999999999999998876421222 134666677888999999999999877543 222444333222
Q ss_pred ---HHHHH-hcCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCChhhHHH
Q 016681 240 ---IRRLC-ECGNAKQANGMLTLALDKGFSPN------EITYSHLIGGYAKEGEIQEVLKLYY-EMEYKSISPTLPAYTS 308 (384)
Q Consensus 240 ---~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 308 (384)
...+. ..+++..|...|-+..+.-.... ...|..+.... .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 23455 78999999888766543110111 12333332222 222222222222 1111112355555666
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 016681 309 LISSLCQCGKLEEADKYFKIM 329 (384)
Q Consensus 309 l~~~~~~~g~~~~a~~~~~~~ 329 (384)
++.++ ..+++.....+++..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHH-HhCCHHHHHHHHHHH
Confidence 66665 446676666665554
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.86 E-value=48 Score=22.84 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=36.0
Q ss_pred HhcCCCCchhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 016681 15 EQRGFSLSLISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQL 74 (384)
Q Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 74 (384)
++.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344544332 23455666767677778888888887776666777666666667666644
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.66 E-value=87 Score=22.37 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=30.5
Q ss_pred cCChHHHHHHHHHHHhCCCCC--cHHhHHHHHH-H-----HHhhcchHHHHHHHHHHHH
Q 016681 71 GGQLQTYVDMLDRIHGKRCSP--MVIVNTSLIL-R-----IIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 121 (384)
.|++-+|.++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 477777777777776554344 4455666655 2 2245666666666666544
No 328
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=43.02 E-value=93 Score=22.55 Aligned_cols=86 Identities=10% Similarity=-0.070 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCCChhhH--H-HHHHHHHhcCCh-HHHHHHHHHHhh-CCCCCCHhHH--HHHHHHHhccCCHHHH
Q 016681 285 QEVLKLYYEMEYKSISPTLPAY--T-SLISSLCQCGKL-EEADKYFKIMKS-HSLVPGVDIY--ESLVGIHLEKGNKAKA 357 (384)
Q Consensus 285 ~~a~~~~~~~~~~~~~~~~~~~--~-~l~~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~a 357 (384)
....++.+.+.+.|..++.... . ..+...+..+.. ..-..+++.+.+ .|..++.... .+-+....+.|+.+-+
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v 170 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHH
Confidence 3344555555566555443221 0 122222222322 233455666666 5555443221 1223334455655444
Q ss_pred HHHHHHHHhCCCC
Q 016681 358 LHLCEEMVSEGLK 370 (384)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (384)
.-+.+.+.+.+++
T Consensus 171 ~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 171 KMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc
Confidence 3333334333443
No 329
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.90 E-value=50 Score=22.43 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 273 HLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 345555555666677777777776654555555555556666666443
No 330
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.54 E-value=90 Score=22.27 Aligned_cols=60 Identities=5% Similarity=-0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHccCChHHHHHHHHHHHh
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYP--NEATIRTLIS-A-----LCKGGQLQTYVDMLDRIHG 86 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 86 (384)
|...+..+ ..|++-+|-++++..-.....+ ....|..||. . ..+.|+..-|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 4499999999999998775555 4566777777 2 3457999999999988754
No 331
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.07 E-value=1e+02 Score=22.43 Aligned_cols=17 Identities=0% Similarity=-0.253 Sum_probs=7.6
Q ss_pred ChhhHHHHHHHHHhcCc
Q 016681 197 YDETFNLLIEGCAKAKR 213 (384)
Q Consensus 197 ~~~~~~~l~~~~~~~~~ 213 (384)
+...-...+.++.+.+.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33444444444444443
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.76 E-value=47 Score=22.90 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 272 SHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555555566677777777777665555555555556666666443
No 333
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.40 E-value=1e+02 Score=22.05 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCCC-cHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHH
Q 016681 75 QTYVDMLDRIHGKRCSP-MVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTI 129 (384)
Q Consensus 75 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (384)
+.+.++|..|...++-. -...|..-...+-..|++.+|.++|..-++.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 34667788887776543 35667777777788888888888888888887776543
No 334
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=39.37 E-value=94 Score=21.56 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=6.9
Q ss_pred HHhcCchHHHHHHH
Q 016681 208 CAKAKRIEESLSYC 221 (384)
Q Consensus 208 ~~~~~~~~~a~~~~ 221 (384)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34456655554444
No 335
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.60 E-value=61 Score=21.68 Aligned_cols=43 Identities=7% Similarity=-0.120 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 016681 45 IYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGK 87 (384)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 87 (384)
+|+.+....+.|+...-..-+..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555455444444344445566788999999999888764
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.36 E-value=1.6e+02 Score=23.96 Aligned_cols=47 Identities=2% Similarity=-0.166 Sum_probs=22.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHhH--HHHHHHHHhccCCHHHHHHHHHH
Q 016681 313 LCQCGKLEEADKYFKIMKSHSLVPGVDI--YESLVGIHLEKGNKAKALHLCEE 363 (384)
Q Consensus 313 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 363 (384)
.+..|+.+- ++.+.+.|..++... -.+-+...+..|+.+-+.-+++.
T Consensus 218 A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDV----AMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 345566543 333444454443221 11233344556777666666654
No 337
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.22 E-value=1.1e+02 Score=21.59 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCC
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ--LQTYVDMLDRIHGKR 88 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 88 (384)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345666677777777777777766421111 22333333334433222 234555555555554
No 338
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=35.59 E-value=1.6e+02 Score=26.25 Aligned_cols=87 Identities=7% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHh--hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 016681 26 FNTLIHVVT--KSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRI 103 (384)
Q Consensus 26 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 103 (384)
|..-+..+. ...+....+...+.++.+-.--+..-..-++..|.+.|-.+.|.++++.+-..- -.+-..+ ..+..+
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~-l~~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM-LSAHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HHCccHH-HHHHHH
Q ss_pred HhhcchHHHHH
Q 016681 104 IQEERIEEGMV 114 (384)
Q Consensus 104 ~~~~~~~~a~~ 114 (384)
++.|+++.+..
T Consensus 560 ~rA~~~~~Vk~ 570 (570)
T 3f3f_C 560 SRAGKYELVKS 570 (570)
T ss_dssp -----------
T ss_pred HHcCChhhccC
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.43 E-value=2.1e+02 Score=27.58 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcC
Q 016681 130 AYSLIVYAKVKMRNLESALVVYEEMLKRGFSANS----FVYTTFIGAYCEYG 177 (384)
Q Consensus 130 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 177 (384)
-|..++..+-+.+-++.+.+.-+...+.-..-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888889998888888877765222222 35666777766554
No 340
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.37 E-value=1.1e+02 Score=20.78 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 016681 133 LIVYAKVKMRNLESALVVYEEM 154 (384)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~~ 154 (384)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555544
No 341
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.35 E-value=1.9e+02 Score=23.55 Aligned_cols=46 Identities=4% Similarity=-0.090 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHH
Q 016681 278 YAKEGEIQEVLKLYYEMEYKSISPTLP---AYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
.+..|..+-+. .+.+.|..++.. -.+.|. ..+..|+.+-+..+++.
T Consensus 218 A~~~g~~~~v~----~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDVAM----RFVEMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHHHH----HHHTTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 34556654333 344455544432 223333 33456777777666664
No 342
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.16 E-value=86 Score=24.27 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=10.7
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 016681 138 KVKMRNLESALVVYEEMLKRG 158 (384)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~~ 158 (384)
.++.|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 344555555555555544443
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.67 E-value=98 Score=20.70 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=18.1
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 016681 81 LDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLR 121 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 121 (384)
|+.+....+.|++..--.-+......++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334433333222233334445555555555555543
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.17 E-value=2e+02 Score=23.51 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHH
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHML 50 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~ 50 (384)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567888889999999999888874
No 345
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.25 E-value=98 Score=19.67 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 016681 213 RIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAK 250 (384)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (384)
..++|.++++.+..+|.. +|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCcHH
Confidence 455555555555554432 5555555554444433
No 346
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=31.65 E-value=3.5e+02 Score=25.91 Aligned_cols=48 Identities=4% Similarity=-0.146 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 140 KMRNLESALVVYEEMLKRGFSANSFVYTTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
+.|+.++-..+++...... +..--..++.+++...+.....++++...
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4444444444444444331 22333445555555555555555554443
No 347
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.62 E-value=1.5e+02 Score=21.66 Aligned_cols=170 Identities=8% Similarity=-0.056 Sum_probs=75.5
Q ss_pred CcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHHHHHHH
Q 016681 91 PMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESALVVYEEMLKRGFSANSFVYTTFI 170 (384)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 170 (384)
++...-...+..+.+.+.. .+...+.++... ++...-...+.++.+.++.+....+. .+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 3444444455555555542 233333333322 24445555555555555533322222 2222 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 016681 171 GAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAK 250 (384)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 250 (384)
.++.+.++.+. ...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.+..
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~- 173 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE- 173 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 66666655432 222222322 344445555555555555433 3333333332 23455555556666666553
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 016681 251 QANGMLTLALDKGFSPNEITYSHLIGGYAK 280 (384)
Q Consensus 251 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (384)
.+...+..+.+. ++...-...+.++.+
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 344444444432 344444444444443
No 348
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.44 E-value=1.2e+02 Score=20.51 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCC
Q 016681 26 FNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQ--LQTYVDMLDRIHGKR 88 (384)
Q Consensus 26 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 88 (384)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345666677777777777777766421111 22333333344443321 244555666665555
No 349
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.36 E-value=2.3e+02 Score=23.74 Aligned_cols=302 Identities=16% Similarity=0.165 Sum_probs=137.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 016681 28 TLIHVVTKSDRNDLVWRIYQHMLENIRYPNEAT--IRTLISALCKGGQLQTYVDMLDRIHGKRCSPMVIVNTSLILRIIQ 105 (384)
Q Consensus 28 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 105 (384)
+.+...+..|+.+-+..++ +.|..|+... ..+.+...+..|+.+-+..+++.-...+ ..+..-. +.+...+.
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~-t~L~~A~~ 89 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQ-TPLHCAAR 89 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSC-CHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCC-CHHHHHHH
Confidence 3455666778776555444 4555554321 1234455567788776666655422111 1122222 23344456
Q ss_pred hcchHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhcCCHH
Q 016681 106 EERIEEGMVLLKRMLRKNMIHDTIA--YSLIVYAKVKMRNLESALVVYEEMLKRGFSAN---SFVYTTFIGAYCEYGKIE 180 (384)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 180 (384)
.|+.+- ++.+.+.|..|+... -...+...+..|+.+.+..+++ .+..++ ..-+ +.+...+..|+.+
T Consensus 90 ~g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~ 160 (437)
T 1n11_A 90 IGHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVR 160 (437)
T ss_dssp HTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHH
T ss_pred CCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHH
Confidence 666553 444444554443211 1123344556777766555543 333221 1112 2344455677765
Q ss_pred HHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCChHHHHH
Q 016681 181 EANCLMQEMENAGLKPYDE---TFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCS---AFNEMIRRLCECGNAKQANG 254 (384)
Q Consensus 181 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 254 (384)
-+. .+.+.|..++.. ..+. +...+..|+.+ +++.+.+.+..++.. ..+ .+...+..|+.+-+..
T Consensus 161 ~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 161 VAE----LLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVARS 230 (437)
T ss_dssp HHH----HHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHHH
T ss_pred HHH----HHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHHH
Confidence 444 344455444321 2222 33344556654 344455555443322 222 2334456677654444
Q ss_pred HHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHH
Q 016681 255 MLTLALDKGFSPNE---ITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTL---PAYTSLISSLCQCGKLEEADKYFKI 328 (384)
Q Consensus 255 ~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 328 (384)
+ .+.|..++. .-.+.+ ...+..|..+-+..+ .+.+..++. .-.+.|. ..+..|+.+-+..+++
T Consensus 231 L----l~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~- 299 (437)
T 1n11_A 231 L----LQYGGSANAESVQGVTPL-HLAAQEGHAEMVALL----LSKQANGNLGNKSGLTPLH-LVAQEGHVPVADVLIK- 299 (437)
T ss_dssp H----HHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHHHH-
T ss_pred H----HHcCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHh-
Confidence 4 444443322 222333 333456666544433 344433332 2233333 3445677665444444
Q ss_pred HhhCCCCCCH---hHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 016681 329 MKSHSLVPGV---DIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPST 373 (384)
Q Consensus 329 ~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 373 (384)
.|..++. .-. +.+...+..|+.+ +++.+.+.|..++.
T Consensus 300 ---~g~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 300 ---HGVMVDATTRMGY-TPLHVASHYGNIK----LVKFLLQHQADVNA 339 (437)
T ss_dssp ---HTCCTTCCCSSCC-CHHHHHHHSSCSH----HHHHHHHTTCCTTC
T ss_pred ---CCccCCCCCCCCC-CHHHHHHHcCcHH----HHHHHHhcCCCCCC
Confidence 3433332 122 2334445667755 44445556666554
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.45 E-value=1.7e+02 Score=21.74 Aligned_cols=56 Identities=13% Similarity=-0.021 Sum_probs=32.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---------CHhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 016681 310 ISSLCQCGKLEEADKYFKIMKSHSLVP---------GVDIYESLVGIHLEKGNKAKALHLCEEMVS 366 (384)
Q Consensus 310 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 366 (384)
+...+..|+.+.+..+++.+.+.|..+ |..-. +-+...++.|+.+-+.-+++.=..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcCcc
Confidence 344456777777777777777765433 22222 234445567777666666655433
No 351
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.27 E-value=74 Score=23.59 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=9.3
Q ss_pred HHHccCChHHHHHHHHHHH
Q 016681 67 ALCKGGQLQTYVDMLDRIH 85 (384)
Q Consensus 67 ~~~~~~~~~~a~~~~~~~~ 85 (384)
.|.+.|.+++|.++|++..
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 3444555555555555543
No 352
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.27 E-value=3.7e+02 Score=25.75 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 167 TTFIGAYCEYGK---IEEANCLMQEMENAG----LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 167 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
..++...|..|. .+.|.+.|+.....+ ++||. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666777776 456777777766532 44543 3333333445566666566666666543 34445667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH---hcCCCCChhhHHHHHHHHHh
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYYEME---YKSISPTLPAYTSLISSLCQ 315 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~ 315 (384)
+.+++...+.....++++.......-....... ++.+...+ ...+.|++.+.+=- ......+...+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888888888888887766533211222333 33333332 22445555554321 11122344567778877766
Q ss_pred cCChHHHHHHHHHHhh
Q 016681 316 CGKLEEADKYFKIMKS 331 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~ 331 (384)
.-..++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 5555555555555544
No 353
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.75 E-value=2.9e+02 Score=24.33 Aligned_cols=27 Identities=0% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHhhcchHHHHHHHHHH
Q 016681 93 VIVNTSLILRIIQEERIEEGMVLLKRM 119 (384)
Q Consensus 93 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 119 (384)
...+|.+++.|...+.+++|..+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 445555555555555555555555554
No 354
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.18 E-value=1.6e+02 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=9.4
Q ss_pred HHHHHHHHHHh-cCCCCCh
Q 016681 286 EVLKLYYEMEY-KSISPTL 303 (384)
Q Consensus 286 ~a~~~~~~~~~-~~~~~~~ 303 (384)
....+++.+.+ .|..++.
T Consensus 131 ~~~~iv~~Ll~~~gad~~~ 149 (186)
T 3t8k_A 131 EMIPLYKLIFSQSGLQLLI 149 (186)
T ss_dssp HHHHHHHHHHTSTTCCTTC
T ss_pred hHHHHHHHHHHhcCCCCcc
Confidence 33455555666 5655443
No 355
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=28.85 E-value=21 Score=20.21 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHhcCCCCch
Q 016681 3 LFEVAFDVCRYLEQRGFSLSL 23 (384)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~ 23 (384)
+++.|...|... +..+||++
T Consensus 34 d~~~A~~~F~~~-~~~IP~eA 53 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREA 53 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHH
Confidence 567777777775 33455543
No 356
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.60 E-value=1.8e+02 Score=21.59 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=12.6
Q ss_pred CchHHHHHHHHHHHhCCCCCCh
Q 016681 212 KRIEESLSYCEQMMSRKLLPSC 233 (384)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~ 233 (384)
.+++.|+..+.+|++.|-.|..
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~ 42 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLY 42 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4566666666666666544433
No 357
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.97 E-value=1.9e+02 Score=21.57 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 016681 176 YGKIEEANCLMQEMENAGLKPYDETFNLLIEGC 208 (384)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (384)
-.+.+.|+-++-+|.+.| .|....-..++.+.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 345555555555555555 44433333333333
No 358
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.65 E-value=80 Score=24.12 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHhhcCChhHHHHHHHHHHhcCCCC
Q 016681 30 IHVVTKSDRNDLVWRIYQHMLENIRYP 56 (384)
Q Consensus 30 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 56 (384)
+...++.|+.+....+++.+.+.|..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i 32 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYL 32 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444556666666666666666555433
No 359
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.31 E-value=2.4e+02 Score=22.56 Aligned_cols=149 Identities=10% Similarity=-0.013 Sum_probs=68.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCCh---hhHHHHHHHH
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYD---ETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSC---SAFNEMIRRL 243 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 243 (384)
+...+..|+.+-+..+++ +.|..++. ...+.+..+... +.......+.+.+.+.|..++. .-.+ .+...
T Consensus 172 L~~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t-~L~~a 246 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKT-PLILA 246 (337)
T ss_dssp HHHHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCC-HHHHH
T ss_pred HHHHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCC-HHHHH
Confidence 334456677765544443 23433322 222233322222 2223333445555666655442 2222 33344
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChH
Q 016681 244 CECGNAKQANGMLTLALDKGFSP---NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLE 320 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 320 (384)
+..|..+.+..++.. .|..+ |..-.+.|..+ ++.|+.+- .+.+.+.|..++..+ .| ...++.|+.+
T Consensus 247 ~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~i----v~~Ll~~GAd~n~~~--~L-~~A~~~~~~~ 315 (337)
T 4g8k_A 247 VEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKI----AELLCKRGASTDCGD--LV-MTARRNYDHS 315 (337)
T ss_dssp HHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHH----HHHHHTTSCSSTTCC--HH-HHHHHTTCHH
T ss_pred HHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHH----HHHHHHCCCCCCCCC--HH-HHHHHcCCHH
Confidence 567777655544431 23222 22222334333 45666543 444566787777654 33 3344566654
Q ss_pred HHHHHHHHHhhCCCCCCH
Q 016681 321 EADKYFKIMKSHSLVPGV 338 (384)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~ 338 (384)
+.+.+++.|-.||.
T Consensus 316 ----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ----LVKVLLSHGAKEDF 329 (337)
T ss_dssp ----HHHHHHHTTCCC--
T ss_pred ----HHHHHHHCcCCCCC
Confidence 45556666766553
No 360
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.19 E-value=3e+02 Score=23.62 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=35.3
Q ss_pred hhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 016681 105 QEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN-----LESALVVYEEMLKRGFS 160 (384)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 160 (384)
+..+.+.|+..+.+|.+.|..|....-..+..+.-.-|. ...|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 456888899999999988877655555545545444443 23455556665655643
No 361
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.83 E-value=2e+02 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=7.7
Q ss_pred CChHHHHHHHHHHHhcC
Q 016681 247 GNAKQANGMLTLALDKG 263 (384)
Q Consensus 247 ~~~~~a~~~~~~~~~~~ 263 (384)
.+++.|+-.+.+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 362
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.80 E-value=1e+02 Score=23.82 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.6
Q ss_pred HhcCChHHHHHHHH
Q 016681 314 CQCGKLEEADKYFK 327 (384)
Q Consensus 314 ~~~g~~~~a~~~~~ 327 (384)
+..|+.+-+..+++
T Consensus 241 ~~~g~~~iv~~Ll~ 254 (273)
T 2pnn_A 241 ASSGKIGVLAYILQ 254 (273)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhChHHHHHHHHH
Confidence 34555554444443
No 363
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.67 E-value=1.7e+02 Score=20.65 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 016681 41 LVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYVDMLDRIHGKRCS 90 (384)
Q Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 90 (384)
....+++.+.+.|...|...-...+....+.| .....+-.++.+.|+.
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 34445555555555433333333444433322 1233444455555543
No 364
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.47 E-value=3.1e+02 Score=23.53 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=27.5
Q ss_pred cCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCC
Q 016681 211 AKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGN-----AKQANGMLTLALDKGF 264 (384)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 264 (384)
..+.+.|+.++.+|.+.|..|....-..+..+....|. ...|...++....-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 35667777777777776655444444444444444333 2234444444444443
No 365
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.45 E-value=1.3e+02 Score=19.26 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 016681 112 GMVLLKRMLRKNMIHDTIAYSLIVYAKVKMR 142 (384)
Q Consensus 112 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 142 (384)
+.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666655565655555444
No 366
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.27 E-value=94 Score=17.65 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=15.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC
Q 016681 350 EKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 350 ~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
..|+.+.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 45667777777777766666665
No 367
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.51 E-value=53 Score=22.08 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 016681 96 NTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNLESAL 148 (384)
Q Consensus 96 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 148 (384)
|.-.|...+.+++.+-|.++++-+++.| +...|.+.+..|...=+++-++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3344445555566666666666665555 4455555555555544444443
No 368
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.16 E-value=4.5e+02 Score=26.56 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHhHHHHHHHHHhccCCHHHHHHHHHH
Q 016681 284 IQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADKYFKIMKSHSLVPGVDIYESLVGIHLEKGNKAKALHLCEE 363 (384)
Q Consensus 284 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 363 (384)
.++..+.|.++.+.--..|.......+.--.+.+++..|.+++.++.+.. |....|..++..+...|. .......++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 44556677777665212233343333444447899999999999998753 678888888888877774 444555555
Q ss_pred HHhCCCCC
Q 016681 364 MVSEGLKP 371 (384)
Q Consensus 364 ~~~~~~~p 371 (384)
+.-..+++
T Consensus 1342 ~~~~~~p~ 1349 (1354)
T 3lxu_X 1342 MMITAFPS 1349 (1354)
T ss_dssp HHHHHSCS
T ss_pred hhhhhCcc
Confidence 54333333
No 369
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.09 E-value=2.2e+02 Score=21.47 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCCCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 016681 76 TYVDMLDRIHGKRCSPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMI 125 (384)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 125 (384)
....+++.+.+.|+-.|...-...++...+.+.+ ....+-.++.+.|+.
T Consensus 94 ~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 3444444455555444444333444333331111 223344445555543
No 370
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.72 E-value=2.2e+02 Score=21.19 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=10.2
Q ss_pred CChHHHHHHHHHHHHcCCCC
Q 016681 142 RNLESALVVYEEMLKRGFSA 161 (384)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~~ 161 (384)
.+.+.|+-++.+|++.|..|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555554443
No 371
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.42 E-value=88 Score=21.03 Aligned_cols=51 Identities=4% Similarity=-0.035 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 016681 271 YSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLPAYTSLISSLCQCGKLEEADK 324 (384)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 324 (384)
|--.|...+.+++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344444445555555555555555444 34445555555444444444433
No 372
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.33 E-value=2.2e+02 Score=21.06 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHhH--HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 311 SSLCQCGKLEEADKYFKIMKSHSLVPGVDI--YESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 311 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+..+++.+.+.|-.++
T Consensus 126 ~~A~~~~~~~~v~~Ll----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 126 SFAACVGSEEIVRLLI----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp HHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 3334566665444444 4454443221 12345556778888888888888888887654
No 373
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.72 E-value=42 Score=22.53 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH---ccCChHHHHHHHHHHHhCCC
Q 016681 37 DRNDLVWRIYQHMLENIRY-PNEATIRTLISALC---KGGQLQTYVDMLDRIHGKRC 89 (384)
Q Consensus 37 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~ 89 (384)
..+++|.+.+..|.+.-+. -.+..||..+..+. ..++. .+++..+.+.++
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 3677888888877765332 36778888887764 33433 455556665544
No 374
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.63 E-value=2.4e+02 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=10.0
Q ss_pred CchHHHHHHHHHHHhCCCCC
Q 016681 212 KRIEESLSYCEQMMSRKLLP 231 (384)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~ 231 (384)
.+++.|+..+.+|++.|-.|
T Consensus 49 SDpDAALywLaRMl~~GEDp 68 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDP 68 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34555555555555554443
No 375
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.55 E-value=1.1e+02 Score=21.94 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 016681 167 TTFIGAYCEYGKIEEANCLMQEME 190 (384)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~ 190 (384)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345666666677777777776654
No 376
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.11 E-value=2.5e+02 Score=21.25 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=9.1
Q ss_pred HhhcchHHHHHHHHHHHHcC
Q 016681 104 IQEERIEEGMVLLKRMLRKN 123 (384)
Q Consensus 104 ~~~~~~~~a~~~~~~~~~~~ 123 (384)
+..|+.+.+..+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 34444444444444444444
No 377
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.82 E-value=2.8e+02 Score=22.45 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhc-C----CCCchhhHHH---HHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 016681 5 EVAFDVCRYLEQR-G----FSLSLISFNT---LIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQT 76 (384)
Q Consensus 5 ~~A~~~~~~~~~~-~----~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 76 (384)
++|.-+|..+... + +.|+...... .+..+.+.-+ -++++.+.+.|+.|...++.-++..+++.=.++.
T Consensus 166 ~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~ 241 (331)
T 3qye_A 166 EEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGF 241 (331)
T ss_dssp HHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHH
T ss_pred HHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHH
Confidence 5677788777643 2 2233322222 2223333323 2567777788888877778888888888778899
Q ss_pred HHHHHHHHHhCCCCCcHHhHHH--HHHH----HHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 016681 77 YVDMLDRIHGKRCSPMVIVNTS--LILR----IIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRN 143 (384)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~--l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 143 (384)
+..+++.+...|.. ...+.+ ++.. .....++++..+.+..... ..+......++.-......
T Consensus 242 ~lrlwD~~l~~g~~--~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 242 VARVFDMIFLQGTE--VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHCCcH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhCCc
Confidence 99999998887633 222222 2211 2233466776666665322 2344555556655555444
No 378
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.19 E-value=1.4e+02 Score=21.64 Aligned_cols=54 Identities=13% Similarity=0.029 Sum_probs=37.5
Q ss_pred CCcHHhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 016681 90 SPMVIVNTSLILRIIQEERIEEGMVLLKRMLRKNMIHDTIAYSLIVYAKVKMRNL 144 (384)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 144 (384)
.|....++.++..++...-.+.++..+.+....|. .+..+|..-++.+++..-+
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 44555667788888877778888888888888775 3677777666666654433
No 379
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.98 E-value=2.4e+02 Score=20.74 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=11.9
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 016681 135 VYAKVKMRNLESALVVYEE 153 (384)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~ 153 (384)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455667777776666654
No 380
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.92 E-value=1.8e+02 Score=19.73 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 016681 175 EYGKIEEANCLM 186 (384)
Q Consensus 175 ~~~~~~~a~~~~ 186 (384)
..|+.+.+..++
T Consensus 11 ~~g~~~~v~~ll 22 (156)
T 1bd8_A 11 ARGDVQEVRRLL 22 (156)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhCCHHHHHHHH
Confidence 334444444333
No 381
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.71 E-value=2.3e+02 Score=20.41 Aligned_cols=76 Identities=4% Similarity=-0.133 Sum_probs=32.8
Q ss_pred ChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 016681 197 YDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEMIRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIG 276 (384)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 276 (384)
+...-...+.++.+.++.+ +...+..+... ++..+-...+.++...++. .+...+..+.+. ++...-...+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~ 191 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVN 191 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHH
Confidence 3344444444444444432 33333333322 3445555555556555553 334444444332 34444444444
Q ss_pred HHHh
Q 016681 277 GYAK 280 (384)
Q Consensus 277 ~~~~ 280 (384)
++.+
T Consensus 192 aL~~ 195 (201)
T 3ltj_A 192 YLET 195 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 382
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.16 E-value=2e+02 Score=21.07 Aligned_cols=179 Identities=13% Similarity=0.051 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCC------hhhHHHHHHHH
Q 016681 170 IGAYCEYGKIEEANCLMQEMENAGLKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPS------CSAFNEMIRRL 243 (384)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 243 (384)
+...++.|+.+.+..+++.-.......+..-.+.+. ..+..|+.+- ++.+.+.+..++ ....+.+. ..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~g~t~L~-~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLH-WSVSFQAHEI----TSFLLSKMENVNLDDYPDDSGWTPFH-IA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHH-HHHHTTCHHH----HHHHHHTCTTCCGGGCCCTTSCCHHH-HH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHH-HHHHcCCHHH----HHHHHhccccccccccCCCCCCCHHH-HH
Confidence 455667888877777765532221123333334443 3445666554 444445552222 22333333 33
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHh
Q 016681 244 CECGNAKQANGMLTLALDKG--FSP---NEITYSHLIGGYAKEGEIQEVLKLYYEMEYKSISPTLP---AYTSLISSLCQ 315 (384)
Q Consensus 244 ~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 315 (384)
+..|+.+ +++.+.+.| ..+ +..-.+.+. ..+..|+.+-+..+ .+.|..++.. -.+.| ...+.
T Consensus 80 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L-~~A~~ 149 (228)
T 2dzn_A 80 CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTCLH-LAVGKKWFEVSQFL----IENGASVRIKDKFNQIPL-HRAAS 149 (228)
T ss_dssp HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHH-HHHHTTCHHHHHHH----HHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred HHcCCHH----HHHHHHhCCCCcccccCCcCCCCHHH-HHHHcCCHhHHHHH----HHcCCCccccCCCCCCHH-HHHHH
Confidence 4556654 445555555 222 222233333 34456776544444 4445554432 23333 44456
Q ss_pred cCChHHHHHHHHHHhhCC-CCCC---HhHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 016681 316 CGKLEEADKYFKIMKSHS-LVPG---VDIYESLVGIHLEKGNKAKALHLCEEMVSEGLKPS 372 (384)
Q Consensus 316 ~g~~~~a~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 372 (384)
.|+.+- ++.+.+.| ..++ ..-. +.+...+..|+.+-+.-+++ +.|..|+
T Consensus 150 ~~~~~~----v~~Ll~~g~~~~~~~d~~g~-t~L~~A~~~~~~~~v~~Ll~---~~ga~~~ 202 (228)
T 2dzn_A 150 VGSLKL----IELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLVE---KYGAEYD 202 (228)
T ss_dssp TTCHHH----HHHHHTTTCCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHH---HHCCCSC
T ss_pred cCCHHH----HHHHHhcCcccccCcCCCCC-CHHHHHHHcCCHHHHHHHHH---hcCCCCC
Confidence 677654 44444444 3222 2222 23445566787765555553 3355554
No 383
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.14 E-value=1.9e+02 Score=19.15 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 016681 249 AKQANGMLTLALDKGFSPNEITYSHLIGGYAKEGEIQEVLKLYYEMEY-KSISPTLPAYTSLISSLCQCGKLEEADKYFK 327 (384)
Q Consensus 249 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 327 (384)
+.+|..-+++..+. ++|......++..+... ++.++++.+...+ .|+ .+.++...+....+.|-.+.. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44555555555433 34555555555544322 4555555555443 344 355666667766676655444 4454
Q ss_pred HHhh
Q 016681 328 IMKS 331 (384)
Q Consensus 328 ~~~~ 331 (384)
.|.+
T Consensus 77 ~m~~ 80 (119)
T 1wty_A 77 EMLE 80 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4543
No 384
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.96 E-value=2.5e+02 Score=20.61 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=13.0
Q ss_pred HHHHHHhhcchHHHHHHHHH
Q 016681 99 LILRIIQEERIEEGMVLLKR 118 (384)
Q Consensus 99 l~~~~~~~~~~~~a~~~~~~ 118 (384)
.+...+..|+.+....++..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34556667887777766654
No 385
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.95 E-value=1.5e+02 Score=18.02 Aligned_cols=33 Identities=0% Similarity=-0.007 Sum_probs=24.3
Q ss_pred CCCCchhhHHHHHHHHhhcCChhHHHHHHHHHH
Q 016681 18 GFSLSLISFNTLIHVVTKSDRNDLVWRIYQHML 50 (384)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 50 (384)
+++|++.||+-+.+.+-+..-..++..+.+++.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 568899999998887777766666666665553
No 386
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.91 E-value=3.8e+02 Score=22.61 Aligned_cols=141 Identities=8% Similarity=0.031 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCchHHHHHHHHHHHhCCCCCChhhHHHH
Q 016681 167 TTFIGAYCEYGK---IEEANCLMQEMENAG----LKPYDETFNLLIEGCAKAKRIEESLSYCEQMMSRKLLPSCSAFNEM 239 (384)
Q Consensus 167 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 239 (384)
..++...|..|+ .+.|.+.|+.....+ ++||.. ..+.. .+ .+..+.-..+++..... .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~-~~-~~~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFA-VG-AQSTEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHH-HH-TTSHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEe-ee-eCCHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 345555666665 456666776665432 334322 11111 11 11222233344444433 244455667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH----HHHhcCCCCChhhHHHHHHHHH
Q 016681 240 IRRLCECGNAKQANGMLTLALDKGFSPNEITYSHLIGGYAKE-GEIQEVLKLYY----EMEYKSISPTLPAYTSLISSLC 314 (384)
Q Consensus 240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 314 (384)
+.+++...+.....++++......+-....... ++.+...+ ...+.|++.+. .+.+. ..++...+..++....
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~ 351 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTT 351 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHh
Confidence 777777777777777777766544311222222 23333322 23344554443 22222 1233355666665544
Q ss_pred hc
Q 016681 315 QC 316 (384)
Q Consensus 315 ~~ 316 (384)
..
T Consensus 352 ~~ 353 (419)
T 3rjo_A 352 NQ 353 (419)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 387
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.72 E-value=2.7e+02 Score=22.67 Aligned_cols=111 Identities=10% Similarity=0.141 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcC---CCCc---hhhHHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 016681 5 EVAFDVCRYLEQRG---FSLS---LISFNTLIHVVTKSDRNDLVWRIYQHMLENIRYPNEATIRTLISALCKGGQLQTYV 78 (384)
Q Consensus 5 ~~A~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 78 (384)
++|.-+|..+.+.- +.++ ....-..+..+.+.-++ ++++.+.+.|+.|...++.-++..+++.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 45777777776531 2222 12222333334443333 46677777788877788888888888888899999
Q ss_pred HHHHHHHhCCCCCc-HHhHH--HHHHH----HHhhcchHHHHHHHHHH
Q 016681 79 DMLDRIHGKRCSPM-VIVNT--SLILR----IIQEERIEEGMVLLKRM 119 (384)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~~~--~l~~~----~~~~~~~~~a~~~~~~~ 119 (384)
.+++.+...|.... ...+. +++.. .....++++...++..+
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 99999998774332 22222 22221 22346777777776654
Done!