Query 016682
Match_columns 384
No_of_seqs 219 out of 1302
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02424 ketopantoate hydroxym 100.0 4E-110 8E-115 820.3 37.8 326 58-383 1-326 (332)
2 COG0413 PanB Ketopantoate hydr 100.0 3E-101 6E-106 733.0 27.1 267 78-351 1-267 (268)
3 PF02548 Pantoate_transf: Keto 100.0 2E-100 3E-105 733.0 24.9 261 77-343 1-261 (261)
4 TIGR00222 panB 3-methyl-2-oxob 100.0 1.6E-95 4E-100 700.4 31.1 263 78-348 1-263 (263)
5 KOG2949 Ketopantoate hydroxyme 100.0 1.1E-94 2.4E-99 678.1 26.9 288 72-363 18-305 (306)
6 PRK00311 panB 3-methyl-2-oxobu 100.0 2.6E-93 5.6E-98 686.3 31.2 264 78-348 1-264 (264)
7 cd06557 KPHMT-like Ketopantoat 100.0 5.8E-89 1.3E-93 653.0 29.2 254 81-340 1-254 (254)
8 cd06556 ICL_KPHMT Members of t 100.0 7.5E-68 1.6E-72 503.5 26.7 238 82-327 2-239 (240)
9 cd00377 ICL_PEPM Members of th 100.0 2.4E-32 5.3E-37 259.8 19.6 181 84-282 1-204 (243)
10 PF13714 PEP_mutase: Phosphoen 100.0 4.3E-30 9.2E-35 244.6 19.3 184 84-286 1-202 (238)
11 PRK11320 prpB 2-methylisocitra 100.0 6.2E-29 1.3E-33 243.0 20.4 178 82-278 7-206 (292)
12 TIGR02317 prpB methylisocitrat 100.0 3.7E-28 8E-33 236.8 25.1 178 82-278 3-201 (285)
13 TIGR02319 CPEP_Pphonmut carbox 100.0 9.5E-29 2.1E-33 241.9 20.0 181 81-280 5-209 (294)
14 COG2513 PrpB PEP phosphonomuta 100.0 6.3E-28 1.4E-32 234.2 20.8 184 81-283 7-213 (289)
15 TIGR02321 Pphn_pyruv_hyd phosp 100.0 1.8E-26 3.9E-31 225.5 24.7 180 82-280 5-211 (290)
16 TIGR02320 PEP_mutase phosphoen 99.9 1.1E-24 2.3E-29 212.6 20.7 178 84-281 1-218 (285)
17 PRK15063 isocitrate lyase; Pro 99.9 6E-22 1.3E-26 201.5 15.2 199 78-285 49-316 (428)
18 TIGR01346 isocit_lyase isocitr 99.1 1.6E-09 3.5E-14 113.3 13.4 165 84-257 51-282 (527)
19 COG2224 AceA Isocitrate lyase 98.4 5E-06 1.1E-10 85.1 14.1 245 81-365 51-345 (433)
20 PRK07259 dihydroorotate dehydr 97.9 0.0014 3.1E-08 63.9 19.1 166 92-282 13-242 (301)
21 KOG1260 Isocitrate lyase [Ener 97.7 0.00057 1.2E-08 71.0 14.0 106 84-193 57-185 (492)
22 TIGR01859 fruc_bis_ald_ fructo 97.6 0.028 6.1E-07 55.5 23.9 215 84-333 8-247 (282)
23 cd00945 Aldolase_Class_I Class 97.6 0.0055 1.2E-07 54.4 16.3 124 103-258 69-200 (201)
24 PRK08185 hypothetical protein; 97.6 0.011 2.3E-07 58.7 19.6 216 83-333 4-245 (283)
25 cd04740 DHOD_1B_like Dihydroor 97.5 0.011 2.3E-07 57.6 19.0 165 93-282 12-239 (296)
26 PRK06498 isocitrate lyase; Pro 97.5 0.00087 1.9E-08 70.6 11.8 127 78-207 47-246 (531)
27 PLN02892 isocitrate lyase 97.4 0.00047 1E-08 73.5 8.9 125 84-212 70-246 (570)
28 cd02810 DHOD_DHPD_FMN Dihydroo 97.4 0.018 3.8E-07 55.7 18.4 158 101-281 22-250 (289)
29 TIGR02317 prpB methylisocitrat 97.4 0.0062 1.3E-07 60.4 15.3 135 104-261 93-231 (285)
30 PRK06801 hypothetical protein; 97.3 0.032 6.9E-07 55.4 19.5 187 79-287 4-216 (286)
31 TIGR03151 enACPred_II putative 97.3 0.02 4.3E-07 57.0 17.8 158 84-289 4-174 (307)
32 PRK06806 fructose-bisphosphate 97.3 0.065 1.4E-06 53.0 21.2 185 79-287 4-213 (281)
33 cd04730 NPD_like 2-Nitropropan 97.3 0.028 6.1E-07 52.4 17.5 140 100-283 14-165 (236)
34 cd00945 Aldolase_Class_I Class 97.2 0.027 5.8E-07 50.0 16.6 141 105-281 19-179 (201)
35 COG2513 PrpB PEP phosphonomuta 97.2 0.0057 1.2E-07 60.8 12.8 137 103-262 97-237 (289)
36 cd00958 DhnA Class I fructose- 97.2 0.01 2.3E-07 55.7 14.0 110 168-289 74-195 (235)
37 PRK11320 prpB 2-methylisocitra 97.1 0.017 3.6E-07 57.6 14.7 133 105-262 99-237 (292)
38 PRK01130 N-acetylmannosamine-6 97.1 0.032 6.9E-07 52.1 15.9 129 103-281 27-180 (221)
39 TIGR01037 pyrD_sub1_fam dihydr 97.0 0.071 1.5E-06 52.0 18.6 153 101-281 24-241 (300)
40 cd00377 ICL_PEPM Members of th 97.0 0.014 3.1E-07 56.1 13.3 106 105-214 90-202 (243)
41 TIGR02319 CPEP_Pphonmut carbox 97.0 0.02 4.4E-07 57.0 14.7 134 104-262 97-236 (294)
42 PRK13585 1-(5-phosphoribosyl)- 97.0 0.017 3.6E-07 54.4 13.3 155 103-282 36-201 (241)
43 PF09370 TIM-br_sig_trns: TIM- 97.0 0.03 6.5E-07 55.2 15.3 146 81-259 4-177 (268)
44 cd02940 DHPD_FMN Dihydropyrimi 96.9 0.036 7.8E-07 54.5 15.7 133 125-281 68-259 (299)
45 TIGR02321 Pphn_pyruv_hyd phosp 96.9 0.048 1E-06 54.2 16.2 107 103-213 94-210 (290)
46 TIGR02320 PEP_mutase phosphoen 96.9 0.017 3.7E-07 57.2 12.9 106 105-214 98-217 (285)
47 TIGR00737 nifR3_yhdG putative 96.8 0.015 3.3E-07 57.5 12.4 156 96-281 15-199 (319)
48 cd04731 HisF The cyclase subun 96.8 0.024 5.1E-07 53.7 13.1 155 103-281 31-200 (243)
49 TIGR03572 WbuZ glycosyl amidat 96.8 0.043 9.4E-07 51.5 14.6 158 104-283 35-206 (232)
50 TIGR02990 ectoine_eutA ectoine 96.8 0.034 7.3E-07 53.7 14.0 175 78-300 46-227 (239)
51 PRK07315 fructose-bisphosphate 96.8 0.21 4.5E-06 49.7 19.8 186 79-289 4-217 (293)
52 PRK08610 fructose-bisphosphate 96.7 0.73 1.6E-05 45.9 24.3 220 79-333 4-250 (286)
53 PF04481 DUF561: Protein of un 96.7 0.032 7E-07 53.8 13.0 117 95-221 64-199 (242)
54 TIGR01949 AroFGH_arch predicte 96.7 0.03 6.5E-07 53.9 12.8 112 159-285 80-202 (258)
55 TIGR00737 nifR3_yhdG putative 96.7 0.11 2.4E-06 51.5 16.9 163 87-273 58-239 (319)
56 PRK07565 dihydroorotate dehydr 96.6 0.089 1.9E-06 52.6 16.1 134 126-289 78-252 (334)
57 TIGR00735 hisF imidazoleglycer 96.6 0.045 9.8E-07 52.6 13.5 161 101-281 31-206 (254)
58 PRK00748 1-(5-phosphoribosyl)- 96.6 0.046 1E-06 51.0 12.9 154 101-281 31-197 (233)
59 TIGR01769 GGGP geranylgeranylg 96.6 0.047 1E-06 51.8 12.9 149 104-284 16-185 (205)
60 cd04732 HisA HisA. Phosphorib 96.5 0.04 8.7E-07 51.4 12.2 154 103-281 33-197 (234)
61 cd02810 DHOD_DHPD_FMN Dihydroo 96.5 0.16 3.4E-06 49.2 16.1 96 91-193 98-198 (289)
62 cd00951 KDGDH 5-dehydro-4-deox 96.5 0.061 1.3E-06 52.7 13.4 102 160-281 10-132 (289)
63 PRK02083 imidazole glycerol ph 96.4 0.077 1.7E-06 50.7 13.6 154 103-281 34-204 (253)
64 PRK07709 fructose-bisphosphate 96.3 1.3 2.8E-05 44.1 24.3 219 79-333 4-250 (285)
65 cd02801 DUS_like_FMN Dihydrour 96.3 0.24 5.2E-06 45.9 16.0 123 88-214 51-189 (231)
66 PF13714 PEP_mutase: Phosphoen 96.3 0.018 3.9E-07 55.6 8.6 130 102-261 88-221 (238)
67 cd04739 DHOD_like Dihydroorota 96.3 0.35 7.6E-06 48.4 17.9 122 135-281 82-244 (325)
68 CHL00162 thiG thiamin biosynth 96.3 0.056 1.2E-06 53.2 11.7 141 163-344 79-255 (267)
69 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.2 0.12 2.5E-06 50.6 13.8 154 103-276 25-194 (275)
70 PF03437 BtpA: BtpA family; I 96.2 0.17 3.8E-06 49.5 14.8 169 80-285 23-210 (254)
71 PRK12857 fructose-1,6-bisphosp 96.1 1.6 3.4E-05 43.5 21.4 219 79-333 4-249 (284)
72 TIGR00262 trpA tryptophan synt 96.1 0.27 5.9E-06 47.8 15.8 110 93-212 12-144 (256)
73 PRK00208 thiG thiazole synthas 96.1 0.19 4.1E-06 49.3 14.4 187 103-344 25-241 (250)
74 cd04729 NanE N-acetylmannosami 96.1 0.31 6.7E-06 45.5 15.5 129 104-281 32-184 (219)
75 TIGR00167 cbbA ketose-bisphosp 96.0 1.3 2.9E-05 44.1 20.4 220 79-333 4-253 (288)
76 COG0826 Collagenase and relate 96.0 0.49 1.1E-05 48.3 17.7 179 92-301 6-191 (347)
77 TIGR00736 nifR3_rel_arch TIM-b 96.0 0.13 2.8E-06 49.6 13.0 118 138-281 55-198 (231)
78 PRK10415 tRNA-dihydrouridine s 96.0 0.13 2.8E-06 51.5 13.4 157 97-283 18-203 (321)
79 cd02809 alpha_hydroxyacid_oxid 96.0 0.32 7E-06 47.9 15.9 141 101-290 83-241 (299)
80 cd00947 TBP_aldolase_IIB Tagat 96.0 1.9 4.1E-05 42.8 21.1 178 84-286 5-207 (276)
81 cd00952 CHBPH_aldolase Trans-o 96.0 0.16 3.5E-06 50.4 13.7 101 165-284 24-145 (309)
82 PRK05437 isopentenyl pyrophosp 96.0 0.23 5E-06 50.4 14.9 154 102-291 80-276 (352)
83 cd00408 DHDPS-like Dihydrodipi 95.9 0.17 3.6E-06 48.8 13.3 104 160-282 7-131 (281)
84 cd02801 DUS_like_FMN Dihydrour 95.9 0.3 6.5E-06 45.3 14.5 153 98-281 9-190 (231)
85 PRK10550 tRNA-dihydrouridine s 95.9 0.093 2E-06 52.5 11.8 108 153-282 63-202 (312)
86 cd04727 pdxS PdxS is a subunit 95.9 0.5 1.1E-05 47.2 16.4 112 84-214 3-118 (283)
87 PRK14040 oxaloacetate decarbox 95.9 0.22 4.7E-06 54.2 15.1 158 103-280 31-203 (593)
88 TIGR01303 IMP_DH_rel_1 IMP deh 95.9 0.22 4.9E-06 52.7 14.9 72 100-193 225-296 (475)
89 PRK12581 oxaloacetate decarbox 95.8 0.29 6.4E-06 51.8 15.6 160 101-276 37-208 (468)
90 PRK10550 tRNA-dihydrouridine s 95.8 0.27 5.9E-06 49.2 14.7 152 93-269 65-237 (312)
91 PRK07998 gatY putative fructos 95.8 2.3 4.9E-05 42.5 23.0 183 79-286 4-210 (283)
92 PRK14042 pyruvate carboxylase 95.8 0.85 1.8E-05 49.8 19.4 157 103-277 30-200 (596)
93 TIGR03249 KdgD 5-dehydro-4-deo 95.8 0.19 4.1E-06 49.4 13.4 104 158-281 13-137 (296)
94 COG0329 DapA Dihydrodipicolina 95.8 0.12 2.7E-06 51.2 11.9 103 160-281 14-137 (299)
95 cd04722 TIM_phosphate_binding 95.8 0.52 1.1E-05 41.0 14.6 144 102-281 15-177 (200)
96 PRK03170 dihydrodipicolinate s 95.8 0.17 3.7E-06 49.3 12.6 98 166-282 18-135 (292)
97 COG3010 NanE Putative N-acetyl 95.7 0.13 2.8E-06 49.4 11.3 97 80-193 115-211 (229)
98 PRK12330 oxaloacetate decarbox 95.7 1.9 4.1E-05 46.2 21.2 141 81-256 67-229 (499)
99 cd00950 DHDPS Dihydrodipicolin 95.7 0.21 4.6E-06 48.3 13.1 96 166-280 17-132 (284)
100 PRK07475 hypothetical protein; 95.7 0.38 8.3E-06 46.3 14.6 41 239-279 181-224 (245)
101 PRK00311 panB 3-methyl-2-oxobu 95.7 0.13 2.8E-06 50.6 11.5 96 104-221 99-208 (264)
102 PLN02591 tryptophan synthase 95.7 0.84 1.8E-05 44.6 17.0 102 105-212 22-135 (250)
103 PRK11815 tRNA-dihydrouridine s 95.7 0.36 7.8E-06 48.5 14.9 154 94-272 68-249 (333)
104 TIGR00742 yjbN tRNA dihydrouri 95.7 0.21 4.4E-06 50.2 13.0 107 156-281 57-202 (318)
105 PRK07028 bifunctional hexulose 95.6 0.53 1.2E-05 48.6 16.4 134 107-281 24-169 (430)
106 PLN02274 inosine-5'-monophosph 95.6 0.086 1.9E-06 56.1 10.8 100 81-190 277-379 (505)
107 PRK11815 tRNA-dihydrouridine s 95.6 0.15 3.3E-06 51.2 12.1 109 155-281 66-212 (333)
108 cd02811 IDI-2_FMN Isopentenyl- 95.6 0.17 3.7E-06 50.7 12.4 152 101-288 71-267 (326)
109 PRK08645 bifunctional homocyst 95.6 0.27 5.8E-06 53.4 14.6 154 110-280 54-230 (612)
110 PRK12330 oxaloacetate decarbox 95.6 0.26 5.7E-06 52.6 14.2 172 83-277 11-203 (499)
111 PRK14024 phosphoribosyl isomer 95.6 0.29 6.2E-06 46.8 13.3 149 103-279 36-195 (241)
112 PRK00278 trpC indole-3-glycero 95.6 0.57 1.2E-05 45.6 15.5 149 102-298 73-245 (260)
113 cd04740 DHOD_1B_like Dihydroor 95.6 0.89 1.9E-05 44.3 16.9 90 93-190 92-185 (296)
114 PRK12331 oxaloacetate decarbox 95.6 0.17 3.7E-06 53.2 12.6 159 98-277 25-200 (448)
115 PRK08318 dihydropyrimidine deh 95.6 0.46 9.9E-06 48.9 15.5 131 127-281 70-260 (420)
116 PRK05692 hydroxymethylglutaryl 95.5 0.87 1.9E-05 45.0 16.6 119 91-214 72-205 (287)
117 PF01791 DeoC: DeoC/LacD famil 95.5 0.56 1.2E-05 44.4 14.7 138 108-276 28-191 (236)
118 cd06556 ICL_KPHMT Members of t 95.5 0.12 2.7E-06 50.0 10.3 88 105-214 95-197 (240)
119 PF00701 DHDPS: Dihydrodipicol 95.4 0.22 4.8E-06 48.4 12.1 97 167-282 19-135 (289)
120 TIGR00674 dapA dihydrodipicoli 95.4 0.25 5.4E-06 48.1 12.4 98 166-282 15-132 (285)
121 COG0821 gcpE 1-hydroxy-2-methy 95.4 0.56 1.2E-05 47.9 15.0 134 142-290 64-212 (361)
122 cd00408 DHDPS-like Dihydrodipi 95.4 0.13 2.8E-06 49.6 10.2 87 104-206 84-171 (281)
123 TIGR02313 HpaI-NOT-DapA 2,4-di 95.4 0.26 5.6E-06 48.6 12.5 104 160-282 10-135 (294)
124 cd06557 KPHMT-like Ketopantoat 95.4 0.13 2.8E-06 50.4 10.2 93 104-219 96-203 (254)
125 PRK04147 N-acetylneuraminate l 95.4 0.36 7.8E-06 47.3 13.4 104 159-281 12-137 (293)
126 TIGR00742 yjbN tRNA dihydrouri 95.4 0.6 1.3E-05 46.9 15.1 145 104-273 72-240 (318)
127 PRK00208 thiG thiazole synthas 95.4 0.17 3.8E-06 49.5 10.9 108 80-208 112-227 (250)
128 COG0646 MetH Methionine syntha 95.4 0.46 1E-05 47.8 14.1 218 78-334 31-286 (311)
129 cd04728 ThiG Thiazole synthase 95.3 0.18 3.9E-06 49.4 11.0 108 80-208 112-227 (248)
130 CHL00200 trpA tryptophan synth 95.3 0.43 9.3E-06 46.8 13.7 123 84-212 8-148 (263)
131 TIGR01037 pyrD_sub1_fam dihydr 95.3 1.4 3E-05 43.1 17.3 103 80-192 78-190 (300)
132 PF04131 NanE: Putative N-acet 95.3 0.25 5.3E-06 46.8 11.5 92 79-190 79-172 (192)
133 cd00954 NAL N-Acetylneuraminic 95.3 0.47 1E-05 46.4 13.8 104 160-282 10-136 (288)
134 PRK13111 trpA tryptophan synth 95.3 1.5 3.2E-05 42.9 17.2 173 84-284 3-209 (258)
135 PRK05286 dihydroorotate dehydr 95.2 1.1 2.3E-05 45.4 16.5 166 93-281 61-296 (344)
136 PRK03620 5-dehydro-4-deoxygluc 95.2 0.53 1.1E-05 46.5 14.0 104 158-281 15-139 (303)
137 cd02911 arch_FMN Archeal FMN-b 95.2 0.91 2E-05 43.5 15.2 104 151-281 71-198 (233)
138 TIGR03217 4OH_2_O_val_ald 4-hy 95.1 0.85 1.8E-05 46.1 15.5 141 105-274 30-186 (333)
139 TIGR00736 nifR3_rel_arch TIM-b 95.1 2 4.4E-05 41.5 17.3 147 83-258 60-219 (231)
140 PRK00366 ispG 4-hydroxy-3-meth 95.1 0.97 2.1E-05 46.5 15.6 152 108-290 51-219 (360)
141 cd04743 NPD_PKS 2-Nitropropane 95.0 0.65 1.4E-05 47.0 14.3 130 135-299 37-188 (320)
142 PLN02274 inosine-5'-monophosph 95.0 0.61 1.3E-05 49.8 14.8 69 100-191 248-317 (505)
143 TIGR00674 dapA dihydrodipicoli 95.0 0.16 3.4E-06 49.5 9.6 77 104-193 85-162 (285)
144 PRK04180 pyridoxal biosynthesi 95.0 0.44 9.5E-06 47.8 12.8 194 83-299 11-240 (293)
145 PF05690 ThiG: Thiazole biosyn 95.0 0.2 4.3E-06 49.0 10.1 146 156-343 65-240 (247)
146 PRK07534 methionine synthase I 95.0 0.46 9.9E-06 48.1 13.1 159 110-280 56-238 (336)
147 cd04738 DHOD_2_like Dihydrooro 95.0 1.3 2.9E-05 44.3 16.3 167 93-281 51-287 (327)
148 PRK09140 2-dehydro-3-deoxy-6-p 95.0 3.3 7.1E-05 39.1 18.0 142 89-281 8-158 (206)
149 cd00564 TMP_TenI Thiamine mono 94.9 1.1 2.3E-05 39.8 14.1 79 180-283 68-159 (196)
150 PRK09282 pyruvate carboxylase 94.9 0.43 9.3E-06 51.9 13.6 165 96-280 23-202 (592)
151 cd00331 IGPS Indole-3-glycerol 94.9 0.51 1.1E-05 43.9 12.4 136 103-284 35-182 (217)
152 PF00463 ICL: Isocitrate lyase 94.9 0.16 3.5E-06 54.3 10.0 111 90-216 56-197 (526)
153 PRK07226 fructose-bisphosphate 94.9 1 2.2E-05 43.7 14.9 121 152-285 73-206 (267)
154 PLN02417 dihydrodipicolinate s 94.9 0.26 5.6E-06 48.2 10.9 81 160-259 11-103 (280)
155 PRK04208 rbcL ribulose bisopho 94.9 2.9 6.3E-05 44.5 19.2 228 9-276 90-345 (468)
156 TIGR00612 ispG_gcpE 1-hydroxy- 94.9 1.1 2.5E-05 45.7 15.4 135 141-291 61-211 (346)
157 cd00954 NAL N-Acetylneuraminic 94.9 0.21 4.6E-06 48.8 10.1 88 103-206 87-176 (288)
158 PRK11840 bifunctional sulfur c 94.9 0.37 7.9E-06 49.0 11.9 199 92-344 85-315 (326)
159 cd02809 alpha_hydroxyacid_oxid 94.8 0.27 5.8E-06 48.5 10.7 96 79-190 159-255 (299)
160 cd02932 OYE_YqiM_FMN Old yello 94.8 0.43 9.4E-06 47.6 12.4 99 171-281 155-297 (336)
161 cd08205 RuBisCO_IV_RLP Ribulos 94.8 1.7 3.6E-05 44.6 16.8 118 144-283 121-256 (367)
162 PRK06843 inosine 5-monophospha 94.8 0.33 7.1E-06 50.6 11.8 90 92-191 195-285 (404)
163 PRK12331 oxaloacetate decarbox 94.8 4 8.7E-05 43.1 19.9 203 106-367 103-317 (448)
164 TIGR01108 oadA oxaloacetate de 94.8 0.35 7.5E-06 52.5 12.4 155 103-276 25-194 (582)
165 PTZ00314 inosine-5'-monophosph 94.8 0.57 1.2E-05 49.8 13.8 70 100-191 241-310 (495)
166 cd04728 ThiG Thiazole synthase 94.8 0.48 1E-05 46.5 12.1 141 104-283 25-187 (248)
167 cd00950 DHDPS Dihydrodipicolin 94.7 0.2 4.4E-06 48.4 9.6 87 104-206 87-174 (284)
168 TIGR01858 tag_bisphos_ald clas 94.7 5.1 0.00011 39.9 21.2 214 84-333 8-247 (282)
169 PRK10415 tRNA-dihydrouridine s 94.7 0.9 1.9E-05 45.5 14.2 153 95-271 69-239 (321)
170 PRK14041 oxaloacetate decarbox 94.7 0.4 8.7E-06 50.8 12.2 156 103-277 29-199 (467)
171 PRK08649 inosine 5-monophospha 94.7 0.78 1.7E-05 47.2 14.0 73 101-191 143-215 (368)
172 PRK07259 dihydroorotate dehydr 94.7 0.64 1.4E-05 45.5 12.9 87 93-190 94-188 (301)
173 PF00478 IMPDH: IMP dehydrogen 94.7 0.43 9.4E-06 48.9 12.1 74 96-191 102-177 (352)
174 cd07944 DRE_TIM_HOA_like 4-hyd 94.6 1.4 3.1E-05 42.9 15.2 131 104-259 25-158 (266)
175 COG0107 HisF Imidazoleglycerol 94.6 0.31 6.7E-06 47.6 10.3 168 84-280 23-205 (256)
176 cd00953 KDG_aldolase KDG (2-ke 94.6 0.29 6.3E-06 47.8 10.4 101 160-281 10-128 (279)
177 cd02803 OYE_like_FMN_family Ol 94.6 0.28 6.1E-06 48.2 10.4 98 172-281 143-288 (327)
178 PRK14041 oxaloacetate decarbox 94.6 2.4 5.1E-05 45.1 17.8 116 106-256 102-225 (467)
179 TIGR02151 IPP_isom_2 isopenten 94.6 2.2 4.8E-05 42.9 16.8 127 101-260 72-211 (333)
180 PRK05458 guanosine 5'-monophos 94.6 0.33 7E-06 49.2 10.9 89 93-192 141-231 (326)
181 TIGR01305 GMP_reduct_1 guanosi 94.6 0.45 9.7E-06 48.6 11.8 117 99-259 106-241 (343)
182 TIGR02313 HpaI-NOT-DapA 2,4-di 94.6 0.3 6.5E-06 48.1 10.4 77 104-193 87-166 (294)
183 cd00381 IMPDH IMPDH: The catal 94.5 0.38 8.2E-06 48.3 11.2 100 81-190 123-225 (325)
184 PRK03170 dihydrodipicolinate s 94.5 0.29 6.2E-06 47.7 10.1 131 104-273 88-221 (292)
185 cd00959 DeoC 2-deoxyribose-5-p 94.5 1.2 2.5E-05 41.5 13.7 119 105-256 75-200 (203)
186 TIGR00222 panB 3-methyl-2-oxob 94.5 0.3 6.5E-06 48.2 10.2 120 78-220 57-206 (263)
187 PF00290 Trp_syntA: Tryptophan 94.4 1.8 3.9E-05 42.6 15.4 123 84-212 1-144 (259)
188 cd04733 OYE_like_2_FMN Old yel 94.4 0.35 7.5E-06 48.4 10.6 131 171-316 150-335 (338)
189 PRK10128 2-keto-3-deoxy-L-rham 94.4 5.5 0.00012 39.3 18.7 114 83-219 8-124 (267)
190 PRK14042 pyruvate carboxylase 94.4 1.8 3.9E-05 47.3 16.6 141 81-256 66-226 (596)
191 PRK05835 fructose-bisphosphate 94.4 6.5 0.00014 39.8 20.4 179 80-285 4-214 (307)
192 PRK05096 guanosine 5'-monophos 94.4 0.62 1.3E-05 47.7 12.3 117 100-260 108-243 (346)
193 CHL00162 thiG thiamin biosynth 94.3 0.48 1E-05 46.8 11.1 109 80-208 126-241 (267)
194 PLN02424 ketopantoate hydroxym 94.3 0.45 9.8E-06 48.4 11.2 124 77-221 76-229 (332)
195 TIGR03326 rubisco_III ribulose 94.3 5.4 0.00012 41.9 19.4 224 9-276 74-329 (412)
196 PRK08195 4-hyroxy-2-oxovalerat 94.3 1.3 2.8E-05 44.8 14.5 140 105-273 31-186 (337)
197 PRK01033 imidazole glycerol ph 94.3 0.93 2E-05 43.8 13.0 154 104-281 35-203 (258)
198 TIGR01305 GMP_reduct_1 guanosi 94.3 0.53 1.1E-05 48.1 11.6 101 81-191 138-241 (343)
199 PF01207 Dus: Dihydrouridine s 94.3 0.22 4.7E-06 49.5 8.8 121 91-214 54-189 (309)
200 TIGR00007 phosphoribosylformim 94.3 0.9 2E-05 42.5 12.4 149 104-278 33-193 (230)
201 PRK09195 gatY tagatose-bisphos 94.2 6.5 0.00014 39.2 20.8 218 79-333 4-249 (284)
202 PLN02489 homocysteine S-methyl 94.2 1.5 3.4E-05 44.3 14.8 119 153-282 132-275 (335)
203 cd02930 DCR_FMN 2,4-dienoyl-Co 94.2 0.51 1.1E-05 47.6 11.4 134 172-320 139-323 (353)
204 TIGR00343 pyridoxal 5'-phospha 94.2 1.8 3.9E-05 43.4 14.9 194 84-298 5-233 (287)
205 PRK12738 kbaY tagatose-bisphos 94.2 6.7 0.00015 39.2 20.5 219 79-333 4-249 (286)
206 TIGR00683 nanA N-acetylneurami 94.1 0.37 8E-06 47.4 9.9 87 104-206 88-176 (290)
207 cd00958 DhnA Class I fructose- 94.1 0.88 1.9E-05 42.7 12.0 124 105-258 82-213 (235)
208 cd02940 DHPD_FMN Dihydropyrimi 94.1 3 6.5E-05 41.1 16.2 80 103-189 117-198 (299)
209 cd02911 arch_FMN Archeal FMN-b 94.1 1.4 3.1E-05 42.2 13.6 144 84-258 65-219 (233)
210 TIGR00683 nanA N-acetylneurami 94.1 0.47 1E-05 46.7 10.5 106 166-291 17-144 (290)
211 COG1794 RacX Aspartate racemas 94.1 0.099 2.1E-06 50.6 5.6 50 231-280 54-104 (230)
212 PRK15063 isocitrate lyase; Pro 94.0 1.5 3.2E-05 46.2 14.5 144 103-259 165-346 (428)
213 PF04131 NanE: Putative N-acet 94.0 1.1 2.4E-05 42.4 12.4 130 103-279 3-149 (192)
214 cd00381 IMPDH IMPDH: The catal 94.0 3.3 7.2E-05 41.6 16.6 120 92-258 35-162 (325)
215 PRK05567 inosine 5'-monophosph 94.0 0.63 1.4E-05 49.1 11.9 91 91-191 269-360 (486)
216 cd04734 OYE_like_3_FMN Old yel 94.0 0.3 6.5E-06 49.3 9.2 43 239-281 228-292 (343)
217 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.9 1.7 3.7E-05 42.5 14.1 93 107-214 99-198 (275)
218 COG0159 TrpA Tryptophan syntha 93.9 7.5 0.00016 38.6 19.1 179 83-282 7-214 (265)
219 PRK08649 inosine 5-monophospha 93.8 0.6 1.3E-05 48.0 11.1 101 81-190 176-284 (368)
220 PRK08227 autoinducer 2 aldolas 93.7 1.3 2.8E-05 43.8 12.8 119 108-258 103-225 (264)
221 PF03060 NMO: Nitronate monoox 93.7 1.8 3.9E-05 43.4 14.1 172 84-298 4-212 (330)
222 COG0352 ThiE Thiamine monophos 93.7 0.64 1.4E-05 44.4 10.4 103 139-282 52-166 (211)
223 TIGR03151 enACPred_II putative 93.7 0.63 1.4E-05 46.4 10.8 88 83-190 101-189 (307)
224 TIGR01302 IMP_dehydrog inosine 93.7 0.77 1.7E-05 48.0 11.9 99 83-191 255-356 (450)
225 COG2022 ThiG Uncharacterized e 93.7 0.55 1.2E-05 46.0 9.9 140 163-343 78-247 (262)
226 TIGR03586 PseI pseudaminic aci 93.7 1.3 2.8E-05 45.0 13.0 152 159-363 90-252 (327)
227 PLN02417 dihydrodipicolinate s 93.6 0.54 1.2E-05 46.0 10.0 88 105-211 89-177 (280)
228 cd04741 DHOD_1A_like Dihydroor 93.6 8.1 0.00018 38.2 18.4 109 124-258 63-192 (294)
229 PRK04147 N-acetylneuraminate l 93.6 0.52 1.1E-05 46.1 10.0 87 104-206 91-178 (293)
230 PRK09485 mmuM homocysteine met 93.6 2 4.4E-05 42.6 14.1 116 154-280 108-246 (304)
231 TIGR00343 pyridoxal 5'-phospha 93.5 0.62 1.3E-05 46.6 10.3 103 167-300 18-141 (287)
232 cd07944 DRE_TIM_HOA_like 4-hyd 93.5 3.9 8.5E-05 39.9 15.7 117 81-214 61-189 (266)
233 cd02931 ER_like_FMN Enoate red 93.5 1.3 2.7E-05 45.5 12.8 176 77-286 138-366 (382)
234 PRK09283 delta-aminolevulinic 93.5 1.5 3.1E-05 44.7 12.8 151 127-300 48-211 (323)
235 COG3473 Maleate cis-trans isom 93.4 1.6 3.6E-05 42.2 12.5 179 75-300 40-225 (238)
236 cd08210 RLP_RrRLP Ribulose bis 93.4 4.4 9.5E-05 41.7 16.5 194 144-362 117-335 (364)
237 PRK12858 tagatose 1,6-diphosph 93.4 0.91 2E-05 46.3 11.5 104 176-284 112-251 (340)
238 cd04734 OYE_like_3_FMN Old yel 93.4 1.4 3E-05 44.5 12.8 164 77-272 129-331 (343)
239 cd04738 DHOD_2_like Dihydrooro 93.4 1.9 4.1E-05 43.1 13.6 81 104-192 150-237 (327)
240 cd08205 RuBisCO_IV_RLP Ribulos 93.3 2 4.4E-05 44.0 14.0 170 78-272 115-307 (367)
241 PRK10200 putative racemase; Pr 93.2 0.17 3.8E-06 48.2 5.8 51 231-281 54-105 (230)
242 cd02930 DCR_FMN 2,4-dienoyl-Co 93.2 1.6 3.5E-05 44.0 12.9 103 77-192 125-245 (353)
243 PRK07807 inosine 5-monophospha 93.2 0.82 1.8E-05 48.5 11.2 98 83-191 258-359 (479)
244 PRK05458 guanosine 5'-monophos 93.2 4.2 9.1E-05 41.4 15.8 99 92-213 85-206 (326)
245 cd02933 OYE_like_FMN Old yello 93.1 0.68 1.5E-05 46.7 10.1 77 239-318 241-329 (338)
246 COG0434 SgcQ Predicted TIM-bar 93.1 4.2 9.2E-05 40.1 14.9 154 104-285 39-215 (263)
247 PF01487 DHquinase_I: Type I 3 93.1 4.4 9.5E-05 38.0 14.8 165 108-299 19-198 (224)
248 TIGR01302 IMP_dehydrog inosine 93.1 1.3 2.8E-05 46.4 12.4 71 99-191 223-293 (450)
249 PRK10558 alpha-dehydro-beta-de 93.1 3.8 8.2E-05 40.0 14.8 113 84-219 10-125 (256)
250 PF05690 ThiG: Thiazole biosyn 93.0 0.81 1.7E-05 44.8 10.0 109 80-208 112-227 (247)
251 PRK13523 NADPH dehydrogenase N 93.0 1.5 3.3E-05 44.3 12.4 115 172-300 144-305 (337)
252 PF00701 DHDPS: Dihydrodipicol 93.0 0.22 4.7E-06 48.4 6.2 131 103-274 87-222 (289)
253 cd02932 OYE_YqiM_FMN Old yello 93.0 3.2 6.9E-05 41.5 14.6 124 77-213 142-295 (336)
254 TIGR03217 4OH_2_O_val_ald 4-hy 93.0 4.8 0.0001 40.8 16.0 107 92-214 77-194 (333)
255 PRK00230 orotidine 5'-phosphat 93.0 6.7 0.00015 37.4 16.2 139 106-274 74-228 (230)
256 PF01207 Dus: Dihydrouridine s 93.0 0.34 7.4E-06 48.2 7.7 107 155-281 55-190 (309)
257 cd08212 RuBisCO_large_I Ribulo 93.0 6 0.00013 42.0 17.0 295 10-365 76-440 (450)
258 cd04726 KGPDC_HPS 3-Keto-L-gul 92.9 4.1 8.8E-05 37.0 14.0 133 80-259 43-186 (202)
259 TIGR01361 DAHP_synth_Bsub phos 92.9 3.9 8.4E-05 40.0 14.7 143 80-260 77-230 (260)
260 TIGR00259 thylakoid_BtpA membr 92.9 4.3 9.3E-05 40.0 14.9 157 104-285 33-210 (257)
261 PTZ00314 inosine-5'-monophosph 92.8 0.93 2E-05 48.2 11.0 101 81-191 270-373 (495)
262 cd02933 OYE_like_FMN Old yello 92.8 3.6 7.7E-05 41.6 14.7 163 77-272 140-330 (338)
263 cd04735 OYE_like_4_FMN Old yel 92.8 1.5 3.2E-05 44.4 12.1 125 77-214 132-290 (353)
264 cd04737 LOX_like_FMN L-Lactate 92.8 1 2.2E-05 46.1 10.9 98 78-191 207-305 (351)
265 PRK12858 tagatose 1,6-diphosph 92.8 1.4 2.9E-05 45.0 11.7 87 99-191 106-206 (340)
266 PRK08318 dihydropyrimidine deh 92.8 2.7 5.9E-05 43.3 14.1 91 92-189 100-198 (420)
267 TIGR01306 GMP_reduct_2 guanosi 92.8 1 2.3E-05 45.6 10.8 83 92-191 137-227 (321)
268 TIGR01949 AroFGH_arch predicte 92.7 1.4 3E-05 42.5 11.2 123 105-258 96-226 (258)
269 PRK11572 copper homeostasis pr 92.7 11 0.00024 37.1 18.5 165 94-288 3-183 (248)
270 TIGR00126 deoC deoxyribose-pho 92.7 2.3 5E-05 40.5 12.5 117 107-255 78-200 (211)
271 PRK06806 fructose-bisphosphate 92.7 2.6 5.6E-05 41.8 13.3 109 89-215 72-207 (281)
272 TIGR00735 hisF imidazoleglycer 92.7 2.3 5.1E-05 40.8 12.7 90 103-211 159-253 (254)
273 cd00952 CHBPH_aldolase Trans-o 92.7 0.81 1.8E-05 45.5 9.8 91 90-193 75-173 (309)
274 PRK06512 thiamine-phosphate py 92.7 1.2 2.6E-05 42.5 10.6 120 110-282 37-172 (221)
275 PRK13384 delta-aminolevulinic 92.6 2.5 5.4E-05 43.0 13.0 153 125-300 48-213 (322)
276 cd00452 KDPG_aldolase KDPG and 92.6 8.2 0.00018 35.4 17.7 139 92-282 5-151 (190)
277 cd00405 PRAI Phosphoribosylant 92.5 3.9 8.5E-05 37.7 13.5 142 98-281 5-159 (203)
278 cd07948 DRE_TIM_HCS Saccharomy 92.5 4.1 9E-05 39.8 14.2 134 105-276 28-186 (262)
279 cd04730 NPD_like 2-Nitropropan 92.5 4.1 8.8E-05 37.9 13.7 85 104-218 72-166 (236)
280 PRK12581 oxaloacetate decarbox 92.4 9.2 0.0002 40.8 17.7 138 81-256 75-235 (468)
281 TIGR02082 metH 5-methyltetrahy 92.4 11 0.00023 44.6 19.6 162 110-283 61-263 (1178)
282 PRK02083 imidazole glycerol ph 92.4 3.2 7E-05 39.7 13.2 88 103-211 157-251 (253)
283 PRK11858 aksA trans-homoaconit 92.4 5.6 0.00012 40.7 15.6 117 94-214 70-194 (378)
284 PRK07107 inosine 5-monophospha 92.3 1.5 3.2E-05 46.9 11.8 68 102-191 244-312 (502)
285 cd02803 OYE_like_FMN_family Ol 92.3 4 8.6E-05 40.1 14.0 101 76-193 128-250 (327)
286 cd03332 LMO_FMN L-Lactate 2-mo 92.2 1.6 3.5E-05 45.2 11.6 98 77-190 238-336 (383)
287 PRK13523 NADPH dehydrogenase N 92.2 2.9 6.3E-05 42.3 13.2 163 77-273 130-322 (337)
288 cd04729 NanE N-acetylmannosami 92.2 1.2 2.6E-05 41.6 9.8 95 80-190 110-205 (219)
289 cd02812 PcrB_like PcrB_like pr 92.2 3.6 7.8E-05 39.6 13.2 153 101-284 14-184 (219)
290 PRK05567 inosine 5'-monophosph 92.2 2.2 4.8E-05 45.0 12.9 70 100-192 228-298 (486)
291 PRK07226 fructose-bisphosphate 92.2 3.3 7.1E-05 40.2 13.1 124 105-257 99-229 (267)
292 PRK08195 4-hyroxy-2-oxovalerat 92.2 9 0.0002 38.8 16.7 109 90-214 76-195 (337)
293 cd04747 OYE_like_5_FMN Old yel 92.1 0.98 2.1E-05 46.2 9.8 101 173-282 147-288 (361)
294 PLN02617 imidazole glycerol ph 92.1 2.9 6.3E-05 45.1 13.7 169 103-285 271-494 (538)
295 PRK01130 N-acetylmannosamine-6 92.0 1.6 3.5E-05 40.8 10.4 97 79-191 105-202 (221)
296 PF00682 HMGL-like: HMGL-like 92.0 1.8 4E-05 40.5 10.9 137 104-274 19-180 (237)
297 PF03932 CutC: CutC family; I 92.0 12 0.00025 35.7 16.1 164 94-287 2-182 (201)
298 TIGR00035 asp_race aspartate r 91.8 0.37 8.1E-06 45.5 6.0 48 234-281 57-105 (229)
299 cd00959 DeoC 2-deoxyribose-5-p 91.8 11 0.00024 35.1 16.4 148 109-294 27-193 (203)
300 TIGR01108 oadA oxaloacetate de 91.7 11 0.00023 41.3 17.5 117 105-256 97-221 (582)
301 COG1646 Predicted phosphate-bi 91.7 4 8.8E-05 39.9 12.9 41 103-154 32-72 (240)
302 PRK05286 dihydroorotate dehydr 91.7 4 8.6E-05 41.3 13.4 83 103-193 158-247 (344)
303 TIGR01304 IMP_DH_rel_2 IMP deh 91.7 2.2 4.8E-05 44.0 11.8 98 83-190 179-283 (369)
304 TIGR02660 nifV_homocitr homoci 91.6 7.4 0.00016 39.6 15.4 114 92-214 65-191 (365)
305 PRK08255 salicylyl-CoA 5-hydro 91.6 1.9 4.2E-05 47.9 12.1 103 172-288 553-699 (765)
306 PRK06843 inosine 5-monophospha 91.5 2.7 5.8E-05 44.0 12.3 66 102-190 155-221 (404)
307 PRK12737 gatY tagatose-bisphos 91.5 16 0.00035 36.4 21.1 219 79-333 4-249 (284)
308 PF02574 S-methyl_trans: Homoc 91.4 3.2 7E-05 40.8 12.2 168 110-288 52-255 (305)
309 TIGR03849 arch_ComA phosphosul 91.4 1.4 2.9E-05 43.1 9.4 97 177-283 77-193 (237)
310 cd04823 ALAD_PBGS_aspartate_ri 91.4 4.1 8.8E-05 41.5 13.0 152 126-300 42-208 (320)
311 PF02548 Pantoate_transf: Keto 91.4 0.86 1.9E-05 45.0 8.1 86 178-279 30-136 (261)
312 PRK00043 thiE thiamine-phospha 91.3 11 0.00024 34.3 15.5 129 105-283 27-169 (212)
313 TIGR00676 fadh2 5,10-methylene 91.3 15 0.00033 35.8 16.8 176 91-273 59-271 (272)
314 cd04739 DHOD_like Dihydroorota 91.3 8.2 0.00018 38.7 15.1 102 82-193 89-197 (325)
315 PF02581 TMP-TENI: Thiamine mo 91.3 1.7 3.7E-05 39.5 9.5 123 110-282 23-157 (180)
316 TIGR01163 rpe ribulose-phospha 91.2 11 0.00024 34.2 14.9 91 103-212 15-108 (210)
317 PRK07084 fructose-bisphosphate 91.2 19 0.00041 36.7 21.1 188 78-287 9-229 (321)
318 PF00490 ALAD: Delta-aminolevu 91.2 3.2 6.9E-05 42.3 12.0 93 234-338 142-244 (324)
319 PRK07535 methyltetrahydrofolat 91.1 8 0.00017 37.9 14.6 165 80-285 11-199 (261)
320 TIGR00693 thiE thiamine-phosph 91.1 9.7 0.00021 34.5 14.3 124 110-283 24-161 (196)
321 PRK07565 dihydroorotate dehydr 91.1 11 0.00024 37.7 16.0 90 94-193 105-199 (334)
322 TIGR01740 pyrF orotidine 5'-ph 91.1 5.5 0.00012 37.3 13.0 146 82-259 40-196 (213)
323 PRK09490 metH B12-dependent me 91.1 10 0.00022 44.9 17.6 178 177-377 170-394 (1229)
324 COG0800 Eda 2-keto-3-deoxy-6-p 91.0 1.8 3.8E-05 41.7 9.6 89 167-278 22-110 (211)
325 PRK07807 inosine 5-monophospha 91.0 3.5 7.6E-05 43.9 12.8 69 100-191 227-296 (479)
326 cd04733 OYE_like_2_FMN Old yel 91.0 4.6 9.9E-05 40.5 13.1 102 77-193 137-258 (338)
327 PRK09283 delta-aminolevulinic 90.9 10 0.00022 38.8 15.2 137 140-280 99-271 (323)
328 PF00478 IMPDH: IMP dehydrogen 90.9 1.3 2.7E-05 45.6 9.0 100 81-191 140-240 (352)
329 cd07939 DRE_TIM_NifV Streptomy 90.8 15 0.00032 35.4 15.9 114 91-214 61-188 (259)
330 TIGR01303 IMP_DH_rel_1 IMP deh 90.8 2.4 5.1E-05 45.1 11.3 102 80-192 253-358 (475)
331 cd00384 ALAD_PBGS Porphobilino 90.7 4.9 0.00011 40.8 12.8 65 234-300 132-203 (314)
332 PRK09875 putative hydrolase; P 90.7 12 0.00027 37.3 15.6 183 80-296 36-244 (292)
333 PRK02615 thiamine-phosphate py 90.7 2.2 4.8E-05 43.6 10.6 140 93-282 148-302 (347)
334 PRK07709 fructose-bisphosphate 90.5 4.6 0.0001 40.3 12.4 106 92-214 78-209 (285)
335 cd03174 DRE_TIM_metallolyase D 90.5 7.1 0.00015 36.7 13.2 134 105-277 25-193 (265)
336 cd04736 MDH_FMN Mandelate dehy 90.4 2.9 6.3E-05 43.1 11.2 96 78-191 222-318 (361)
337 TIGR00259 thylakoid_BtpA membr 90.4 0.9 1.9E-05 44.7 7.2 61 212-280 7-84 (257)
338 TIGR01768 GGGP-family geranylg 90.3 3 6.5E-05 40.3 10.6 153 104-289 19-193 (223)
339 cd02931 ER_like_FMN Enoate red 90.3 3.7 8.1E-05 42.1 11.9 81 232-320 248-352 (382)
340 COG0042 tRNA-dihydrouridine sy 90.2 2.9 6.2E-05 42.2 10.8 116 167-299 76-234 (323)
341 PLN02535 glycolate oxidase 90.2 3.8 8.3E-05 42.2 11.9 100 77-192 208-308 (364)
342 cd00951 KDGDH 5-dehydro-4-deox 90.1 2.8 6E-05 41.2 10.4 85 104-206 86-171 (289)
343 PRK05437 isopentenyl pyrophosp 90.1 17 0.00036 37.1 16.3 84 99-192 134-218 (352)
344 PRK13397 3-deoxy-7-phosphohept 90.1 19 0.00042 35.4 16.0 144 80-261 67-221 (250)
345 TIGR01304 IMP_DH_rel_2 IMP deh 90.0 2.4 5.2E-05 43.7 10.3 129 98-279 54-193 (369)
346 PRK07998 gatY putative fructos 90.0 4.5 9.8E-05 40.4 11.8 107 90-214 73-205 (283)
347 PRK09282 pyruvate carboxylase 89.9 6.3 0.00014 43.1 13.9 118 104-256 101-226 (592)
348 PRK14040 oxaloacetate decarbox 89.9 24 0.00051 38.8 18.2 139 81-256 67-227 (593)
349 PLN02495 oxidoreductase, actin 89.9 5 0.00011 41.6 12.6 111 125-258 82-213 (385)
350 cd04737 LOX_like_FMN L-Lactate 89.9 3.4 7.3E-05 42.3 11.2 46 243-290 233-290 (351)
351 COG2022 ThiG Uncharacterized e 89.9 3 6.4E-05 41.1 10.1 109 80-208 119-234 (262)
352 TIGR00284 dihydropteroate synt 89.9 23 0.0005 38.2 17.7 142 105-286 171-322 (499)
353 cd04735 OYE_like_4_FMN Old yel 89.9 5.2 0.00011 40.4 12.5 44 239-282 235-292 (353)
354 PRK12999 pyruvate carboxylase; 89.9 4.6 9.9E-05 47.4 13.5 162 103-277 559-737 (1146)
355 PRK07475 hypothetical protein; 89.9 0.55 1.2E-05 45.3 5.2 47 233-279 59-106 (245)
356 COG2070 Dioxygenases related t 89.8 5.6 0.00012 40.4 12.6 138 134-298 47-206 (336)
357 TIGR00677 fadh2_euk methylenet 89.8 22 0.00048 35.2 18.5 179 92-274 61-276 (281)
358 cd07943 DRE_TIM_HOA 4-hydroxy- 89.8 11 0.00024 36.4 14.1 144 104-275 27-185 (263)
359 TIGR02708 L_lactate_ox L-lacta 89.7 4.6 9.9E-05 41.7 12.0 99 77-191 213-312 (367)
360 PRK03620 5-dehydro-4-deoxygluc 89.7 2.9 6.4E-05 41.3 10.3 85 104-206 93-178 (303)
361 TIGR01520 FruBisAldo_II_A fruc 89.6 28 0.0006 36.1 18.5 233 86-333 21-304 (357)
362 PRK05096 guanosine 5'-monophos 89.6 3.4 7.3E-05 42.5 10.7 100 81-191 142-242 (346)
363 cd08148 RuBisCO_large Ribulose 89.6 15 0.00032 38.1 15.5 254 10-318 58-339 (366)
364 COG0329 DapA Dihydrodipicolina 89.6 2.3 5E-05 42.3 9.5 97 94-206 77-178 (299)
365 PF01116 F_bP_aldolase: Fructo 89.5 24 0.00052 35.2 16.7 180 84-291 9-222 (287)
366 cd04823 ALAD_PBGS_aspartate_ri 89.4 12 0.00025 38.2 14.3 137 140-280 96-268 (320)
367 PRK13384 delta-aminolevulinic 89.4 10 0.00022 38.6 13.8 137 140-280 101-272 (322)
368 TIGR03239 GarL 2-dehydro-3-deo 89.4 17 0.00038 35.3 15.1 113 84-219 3-118 (249)
369 PRK09427 bifunctional indole-3 89.3 14 0.0003 39.2 15.5 146 92-284 159-316 (454)
370 PRK10605 N-ethylmaleimide redu 89.3 5.1 0.00011 40.9 11.9 75 241-319 251-337 (362)
371 cd03315 MLE_like Muconate lact 89.2 5.9 0.00013 37.9 11.8 93 168-278 85-184 (265)
372 TIGR02090 LEU1_arch isopropylm 89.2 12 0.00025 38.2 14.5 136 104-277 27-187 (363)
373 PRK00979 tetrahydromethanopter 89.1 23 0.0005 36.0 16.1 135 106-278 63-223 (308)
374 cd02922 FCB2_FMN Flavocytochro 89.0 5.9 0.00013 40.4 12.1 97 79-190 200-299 (344)
375 TIGR01362 KDO8P_synth 3-deoxy- 88.9 21 0.00045 35.5 15.3 154 80-262 61-224 (258)
376 TIGR02151 IPP_isom_2 isopenten 88.8 17 0.00036 36.7 15.1 80 104-193 133-212 (333)
377 cd00452 KDPG_aldolase KDPG and 88.8 17 0.00036 33.4 14.0 114 93-260 57-172 (190)
378 PF00682 HMGL-like: HMGL-like 88.7 20 0.00044 33.5 14.7 151 80-256 45-210 (237)
379 PLN02858 fructose-bisphosphate 88.7 58 0.0013 39.3 21.5 183 77-283 1098-1310(1378)
380 PRK00915 2-isopropylmalate syn 88.7 12 0.00025 40.1 14.6 137 104-274 31-192 (513)
381 cd00953 KDG_aldolase KDG (2-ke 88.7 3.5 7.7E-05 40.3 9.9 89 91-193 66-160 (279)
382 COG0042 tRNA-dihydrouridine sy 88.6 11 0.00025 37.9 13.8 132 102-258 82-227 (323)
383 PRK09197 fructose-bisphosphate 88.5 33 0.00071 35.5 17.1 229 84-333 13-296 (350)
384 PF02679 ComA: (2R)-phospho-3- 88.4 1.3 2.8E-05 43.4 6.7 76 176-261 89-169 (244)
385 cd08210 RLP_RrRLP Ribulose bis 88.4 16 0.00035 37.6 14.9 175 78-276 111-307 (364)
386 PF09505 Dimeth_Pyl: Dimethyla 88.4 5.6 0.00012 41.0 11.2 161 94-279 261-433 (466)
387 TIGR03128 RuMP_HxlA 3-hexulose 88.4 20 0.00043 32.8 14.4 131 110-281 22-165 (206)
388 PRK11197 lldD L-lactate dehydr 88.4 5.5 0.00012 41.3 11.5 97 78-190 231-328 (381)
389 PRK07107 inosine 5-monophospha 88.3 3.1 6.8E-05 44.5 10.0 101 81-191 271-381 (502)
390 TIGR03249 KdgD 5-dehydro-4-deo 88.3 4.4 9.6E-05 39.8 10.4 85 104-206 91-176 (296)
391 TIGR00977 LeuA_rel 2-isopropyl 88.3 21 0.00045 38.5 16.2 150 104-282 28-205 (526)
392 TIGR03569 NeuB_NnaB N-acetylne 88.3 8.3 0.00018 39.2 12.5 90 178-288 103-205 (329)
393 PRK00865 glutamate racemase; P 88.3 1.5 3.2E-05 42.6 6.9 90 153-281 6-98 (261)
394 PRK13396 3-deoxy-7-phosphohept 88.2 26 0.00057 36.1 16.2 144 80-261 153-308 (352)
395 cd07948 DRE_TIM_HCS Saccharomy 88.2 23 0.00049 34.7 15.1 126 80-214 53-190 (262)
396 PRK08610 fructose-bisphosphate 88.2 9.2 0.0002 38.2 12.6 106 92-214 78-209 (286)
397 TIGR02660 nifV_homocitr homoci 88.1 22 0.00047 36.3 15.5 135 104-276 28-187 (365)
398 PRK08255 salicylyl-CoA 5-hydro 88.1 7.5 0.00016 43.4 13.2 164 77-274 539-735 (765)
399 cd07938 DRE_TIM_HMGL 3-hydroxy 88.1 18 0.00038 35.6 14.4 149 91-284 66-233 (274)
400 cd04724 Tryptophan_synthase_al 88.1 25 0.00053 33.8 15.1 98 105-212 20-133 (242)
401 PLN02746 hydroxymethylglutaryl 88.1 23 0.00051 36.3 15.7 163 92-300 115-305 (347)
402 TIGR03128 RuMP_HxlA 3-hexulose 88.0 21 0.00045 32.6 15.0 113 101-258 63-185 (206)
403 PRK12737 gatY tagatose-bisphos 87.9 9.3 0.0002 38.1 12.4 108 90-214 73-208 (284)
404 cd07943 DRE_TIM_HOA 4-hydroxy- 87.9 26 0.00056 33.8 15.3 108 90-214 73-191 (263)
405 cd07941 DRE_TIM_LeuA3 Desulfob 87.9 16 0.00035 35.6 14.0 141 105-274 26-194 (273)
406 PRK09195 gatY tagatose-bisphos 87.8 9.9 0.00021 38.0 12.5 108 90-214 73-208 (284)
407 cd00384 ALAD_PBGS Porphobilino 87.7 20 0.00042 36.6 14.5 137 140-280 91-263 (314)
408 PRK11858 aksA trans-homoaconit 87.7 21 0.00046 36.6 15.3 135 104-276 31-190 (378)
409 cd00537 MTHFR Methylenetetrahy 87.6 28 0.00061 33.6 18.9 125 91-219 59-197 (274)
410 TIGR01859 fruc_bis_ald_ fructo 87.5 9.2 0.0002 37.9 12.1 130 92-259 75-230 (282)
411 PRK13813 orotidine 5'-phosphat 87.5 24 0.00052 32.7 17.5 118 106-259 74-192 (215)
412 COG1902 NemA NADH:flavin oxido 87.4 6.7 0.00015 40.4 11.4 137 172-321 150-336 (363)
413 PF09370 TIM-br_sig_trns: TIM- 87.3 11 0.00024 37.5 12.4 115 80-206 139-260 (268)
414 PF03437 BtpA: BtpA family; I 87.3 2.4 5.1E-05 41.7 7.7 62 212-280 8-85 (254)
415 PRK05692 hydroxymethylglutaryl 87.3 25 0.00053 34.9 14.9 142 105-274 32-198 (287)
416 PRK06852 aldolase; Validated 87.1 6.4 0.00014 39.7 10.8 104 138-258 150-264 (304)
417 PRK00507 deoxyribose-phosphate 87.1 29 0.00063 33.3 16.1 93 137-256 105-205 (221)
418 cd07940 DRE_TIM_IPMS 2-isoprop 87.0 30 0.00065 33.5 15.1 114 91-214 61-195 (268)
419 cd02811 IDI-2_FMN Isopentenyl- 86.9 8.1 0.00018 38.8 11.5 97 82-191 168-284 (326)
420 PF07302 AroM: AroM protein; 86.9 1.4 3E-05 42.6 5.8 172 81-278 16-206 (221)
421 cd03316 MR_like Mandelate race 86.6 7 0.00015 38.9 10.8 93 168-278 139-244 (357)
422 TIGR01858 tag_bisphos_ald clas 86.6 15 0.00033 36.6 13.1 108 90-214 71-206 (282)
423 PF00490 ALAD: Delta-aminolevu 86.5 26 0.00057 35.8 14.8 162 108-280 66-273 (324)
424 PRK10605 N-ethylmaleimide redu 86.5 11 0.00024 38.5 12.4 160 77-273 147-338 (362)
425 PRK15452 putative protease; Pr 86.4 48 0.001 35.1 17.5 175 93-299 4-186 (443)
426 cd04824 eu_ALAD_PBGS_cysteine_ 86.4 22 0.00047 36.4 14.1 136 141-280 95-269 (320)
427 PF02219 MTHFR: Methylenetetra 86.4 31 0.00067 33.8 15.0 183 90-274 70-287 (287)
428 PRK06801 hypothetical protein; 86.4 15 0.00033 36.6 13.0 132 89-259 72-233 (286)
429 PLN02746 hydroxymethylglutaryl 86.4 27 0.00058 35.9 15.0 157 94-280 63-246 (347)
430 PRK08185 hypothetical protein; 86.2 25 0.00055 35.1 14.4 107 90-214 67-204 (283)
431 cd07939 DRE_TIM_NifV Streptomy 86.2 29 0.00063 33.4 14.5 134 105-276 26-184 (259)
432 cd03319 L-Ala-DL-Glu_epimerase 86.1 9.9 0.00021 37.4 11.5 95 167-279 133-233 (316)
433 PRK08508 biotin synthase; Prov 86.1 12 0.00025 36.7 11.8 116 108-255 52-182 (279)
434 PRK05718 keto-hydroxyglutarate 86.0 5.9 0.00013 37.8 9.5 88 167-278 24-112 (212)
435 TIGR02311 HpaI 2,4-dihydroxyhe 85.9 13 0.00029 36.0 12.1 113 84-219 3-118 (249)
436 PRK11840 bifunctional sulfur c 85.9 10 0.00022 38.8 11.5 108 80-208 186-301 (326)
437 PRK13753 dihydropteroate synth 85.8 8.5 0.00018 38.4 10.8 90 167-282 22-127 (279)
438 cd04722 TIM_phosphate_binding 85.8 22 0.00048 30.7 13.3 69 105-193 77-145 (200)
439 PRK13587 1-(5-phosphoribosyl)- 85.8 20 0.00044 34.3 13.1 150 103-279 35-197 (234)
440 PRK12595 bifunctional 3-deoxy- 85.8 35 0.00076 35.1 15.6 142 83-262 173-325 (360)
441 cd04727 pdxS PdxS is a subunit 85.7 8.1 0.00018 38.7 10.6 94 86-192 106-226 (283)
442 PF03060 NMO: Nitronate monoox 85.7 6.3 0.00014 39.5 10.0 91 82-190 127-218 (330)
443 TIGR01235 pyruv_carbox pyruvat 85.6 11 0.00023 44.4 13.1 127 144-277 595-735 (1143)
444 TIGR02082 metH 5-methyltetrahy 85.6 21 0.00045 42.3 15.3 119 137-258 238-387 (1178)
445 cd01568 QPRTase_NadC Quinolina 85.5 8.6 0.00019 37.7 10.7 84 81-190 171-254 (269)
446 cd00947 TBP_aldolase_IIB Tagat 85.5 18 0.00039 36.0 12.9 107 91-214 69-202 (276)
447 cd07945 DRE_TIM_CMS Leptospira 85.5 19 0.0004 35.6 13.0 124 104-255 79-219 (280)
448 TIGR00067 glut_race glutamate 85.5 2.4 5.3E-05 41.0 6.8 48 233-280 40-91 (251)
449 PF04551 GcpE: GcpE protein; 85.5 7.1 0.00015 40.3 10.3 158 80-290 33-219 (359)
450 COG0646 MetH Methionine syntha 85.3 23 0.00051 36.0 13.6 89 171-262 53-166 (311)
451 PRK12344 putative alpha-isopro 85.2 31 0.00068 37.2 15.5 142 105-277 33-204 (524)
452 PRK06552 keto-hydroxyglutarate 85.0 13 0.00029 35.4 11.3 121 167-318 22-151 (213)
453 TIGR01496 DHPS dihydropteroate 84.8 11 0.00023 36.8 10.9 89 167-281 20-125 (257)
454 PRK12738 kbaY tagatose-bisphos 84.8 15 0.00033 36.7 12.1 108 90-214 73-208 (286)
455 TIGR00433 bioB biotin syntheta 84.8 15 0.00032 35.5 11.8 71 167-257 121-205 (296)
456 PF01791 DeoC: DeoC/LacD famil 84.6 10 0.00023 35.8 10.5 127 102-254 79-223 (236)
457 COG0434 SgcQ Predicted TIM-bar 84.5 3.8 8.2E-05 40.4 7.5 42 236-277 31-88 (263)
458 PRK00865 glutamate racemase; P 84.5 33 0.00071 33.2 14.1 68 143-213 20-96 (261)
459 TIGR01093 aroD 3-dehydroquinat 84.5 37 0.00081 32.1 14.8 165 110-298 22-202 (228)
460 cd04741 DHOD_1A_like Dihydroor 84.1 25 0.00055 34.7 13.3 78 105-189 109-191 (294)
461 cd00956 Transaldolase_FSA Tran 84.1 11 0.00023 35.8 10.3 90 81-190 91-184 (211)
462 PRK13398 3-deoxy-7-phosphohept 84.0 46 0.001 32.8 18.1 165 80-251 79-265 (266)
463 PRK07455 keto-hydroxyglutarate 83.9 14 0.0003 34.3 10.7 107 168-300 22-132 (187)
464 TIGR00126 deoC deoxyribose-pho 83.9 41 0.00088 32.1 16.4 167 79-300 15-204 (211)
465 PLN02979 glycolate oxidase 83.8 13 0.00029 38.5 11.5 98 77-190 208-306 (366)
466 PRK07084 fructose-bisphosphate 83.8 18 0.00039 36.9 12.3 106 92-214 86-223 (321)
467 PRK07695 transcriptional regul 83.8 8.1 0.00018 35.6 9.2 121 109-283 24-158 (201)
468 PRK12999 pyruvate carboxylase; 83.7 31 0.00068 40.7 15.7 142 81-256 597-763 (1146)
469 PRK07455 keto-hydroxyglutarate 83.6 37 0.00081 31.4 16.5 144 86-281 7-159 (187)
470 PRK06256 biotin synthase; Vali 83.5 19 0.00041 35.7 12.2 96 137-257 125-234 (336)
471 COG2159 Predicted metal-depend 83.4 11 0.00024 37.4 10.4 69 146-220 91-169 (293)
472 PRK07094 biotin synthase; Prov 83.3 31 0.00067 33.9 13.6 117 106-256 80-212 (323)
473 PRK09250 fructose-bisphosphate 83.2 3.2 7E-05 42.6 6.8 79 105-188 223-315 (348)
474 cd04747 OYE_like_5_FMN Old yel 82.8 27 0.00058 35.9 13.2 128 77-217 132-289 (361)
475 cd07938 DRE_TIM_HMGL 3-hydroxy 82.8 28 0.00061 34.1 12.9 125 105-259 26-169 (274)
476 PLN02493 probable peroxisomal 82.7 15 0.00033 38.0 11.5 98 77-190 209-307 (367)
477 COG0159 TrpA Tryptophan syntha 82.7 47 0.001 33.1 14.4 128 137-287 4-160 (265)
478 TIGR02708 L_lactate_ox L-lacta 82.7 20 0.00044 37.1 12.3 89 134-259 214-312 (367)
479 cd04824 eu_ALAD_PBGS_cysteine_ 82.7 27 0.00059 35.7 12.9 65 234-300 136-208 (320)
480 COG0119 LeuA Isopropylmalate/h 82.7 39 0.00084 35.5 14.5 154 104-292 29-241 (409)
481 PRK08227 autoinducer 2 aldolas 82.6 12 0.00026 37.1 10.2 90 182-286 105-203 (264)
482 cd03329 MR_like_4 Mandelate ra 82.5 15 0.00032 37.2 11.1 99 167-287 142-250 (368)
483 COG0821 gcpE 1-hydroxy-2-methy 82.4 3 6.5E-05 42.8 6.1 43 237-279 34-79 (361)
484 PRK13753 dihydropteroate synth 82.4 50 0.0011 33.0 14.6 126 107-253 33-165 (279)
485 PRK07360 FO synthase subunit 2 82.4 21 0.00046 36.4 12.4 128 105-259 100-254 (371)
486 TIGR02090 LEU1_arch isopropylm 82.3 47 0.001 33.9 14.8 113 92-214 64-190 (363)
487 TIGR01036 pyrD_sub2 dihydrooro 82.3 60 0.0013 32.9 16.5 167 92-281 57-295 (335)
488 PTZ00413 lipoate synthase; Pro 82.2 44 0.00095 35.2 14.5 171 80-271 110-318 (398)
489 PLN03228 methylthioalkylmalate 82.1 25 0.00055 37.8 13.2 140 105-277 112-289 (503)
490 TIGR03551 F420_cofH 7,8-dideme 82.0 29 0.00062 34.9 13.0 124 107-259 81-232 (343)
491 PRK11613 folP dihydropteroate 82.0 58 0.0013 32.5 15.9 156 105-283 44-219 (282)
492 PRK10128 2-keto-3-deoxy-L-rham 81.8 8.4 0.00018 38.0 8.9 81 178-280 33-119 (267)
493 PRK15108 biotin synthase; Prov 81.8 24 0.00052 35.8 12.4 115 105-249 85-213 (345)
494 PRK04169 geranylgeranylglycery 81.8 52 0.0011 32.0 14.1 149 106-285 26-194 (232)
495 PRK12857 fructose-1,6-bisphosp 81.7 24 0.00052 35.2 12.1 107 91-214 74-208 (284)
496 cd04732 HisA HisA. Phosphorib 81.6 45 0.00098 31.0 14.0 143 80-258 61-218 (234)
497 TIGR01740 pyrF orotidine 5'-ph 81.5 41 0.00089 31.5 13.1 157 106-292 15-179 (213)
498 COG0284 PyrF Orotidine-5'-phos 81.5 12 0.00027 36.4 9.8 131 155-292 64-197 (240)
499 cd00502 DHQase_I Type I 3-dehy 81.5 48 0.001 31.2 15.9 149 112-285 24-185 (225)
500 cd00453 FTBP_aldolase_II Fruct 81.2 71 0.0015 33.0 21.3 227 82-333 3-289 (340)
No 1
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=100.00 E-value=3.6e-110 Score=820.31 Aligned_cols=326 Identities=83% Similarity=1.305 Sum_probs=314.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCH
Q 016682 58 MSNIPENSVYGGPKPQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (384)
Q Consensus 58 ~s~~~~~~~~~~~~~~~~~~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~Vtl 137 (384)
||+.|+.++|+.++++.+.+|+|+.+|+++|++|+||+|+|||||+||+++|++|+|+||||||++|++|||+||.+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~k~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtl 80 (332)
T PLN02424 1 MSNLPEDTVYGGPKPQNPAQRVTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITL 80 (332)
T ss_pred CCCCCcccccCCCCcccCCCCcCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCH
Confidence 68889999998887666567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccC
Q 016682 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGL 217 (384)
Q Consensus 138 deMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGL 217 (384)
|||++|+++|+||+++||+++|||||||+.|++++++||.|+|+|+||++||||||..+++++|++|+++||||||||||
T Consensus 81 d~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGL 160 (332)
T PLN02424 81 DEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGL 160 (332)
T ss_pred HHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999557899999999999999999999
Q ss_pred CcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhh
Q 016682 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLL 297 (384)
Q Consensus 218 tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlL 297 (384)
|||+++++||||+|||+.++++++++||++||+||||+|||||||.+++++||++++|||||||||++|||||||+||||
T Consensus 161 tPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It~~l~IPtIGIGAG~~cDGQVLV~~D~L 240 (332)
T PLN02424 161 TPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAPVAAAITSALQIPTIGIGAGPFCSGQVLVYHDLL 240 (332)
T ss_pred cceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHHHhCCCCEEeecCCCCCCceeEeHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCccCChhhHHHHHHHHHhcChhHHHHHHHHHH
Q 016682 298 GMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKLGFDKAAAVAAEAA 377 (384)
Q Consensus 298 G~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~ 377 (384)
|++.+|+|+++.|||||+|+|+++.+++|+++|++|||+|+||.++|++|+|++++|++|+++|+++|+||||+++++++
T Consensus 241 G~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~~eh~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (332)
T PLN02424 241 GMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPGPAHSPYKISSAEVDGFAEALQKRGLDKAAEAAAAAA 320 (332)
T ss_pred CCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCCccccCCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 99977888889999999999999999999999999999999999999779999999999999999999999999999999
Q ss_pred hhhhhc
Q 016682 378 EKIDTA 383 (384)
Q Consensus 378 ~~~~~~ 383 (384)
||.+.+
T Consensus 321 ~~~~~~ 326 (332)
T PLN02424 321 EKEESS 326 (332)
T ss_pred hhcccc
Confidence 998765
No 2
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-101 Score=733.02 Aligned_cols=267 Identities=51% Similarity=0.869 Sum_probs=262.5
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
++|+.+|+++|+.++||+|+|||||++|++++++|+|+||||||++|+++||++|++||++||++|+++|+||++++||+
T Consensus 1 ~~t~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv 80 (268)
T COG0413 1 KITTRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVV 80 (268)
T ss_pred CccHHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHH
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~ 237 (384)
+|||||||+.|++++++||.|+|||+||++|||||| .|++++|++|+++|||||||||||||+++++||||+|||++++
T Consensus 81 ~DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG-~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~ 159 (268)
T COG0413 81 ADLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGG-EEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEES 159 (268)
T ss_pred eCCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCC-HHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhh
Q 016682 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFA 317 (384)
Q Consensus 238 a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~ 317 (384)
+++++++|+++|+||||+|||||||++++++||++++|||||||||++|||||||+|||||++ .++.|||+|+|.
T Consensus 160 a~~l~~dA~ale~AGaf~ivlE~Vp~~lA~~IT~~lsiPtIGIGAG~~cDGQvLV~~D~lGl~-----~~~~PkFvK~y~ 234 (268)
T COG0413 160 AEKLLEDAKALEEAGAFALVLECVPAELAKEITEKLSIPTIGIGAGPGCDGQVLVMHDMLGLS-----GGHKPKFVKRYA 234 (268)
T ss_pred HHHHHHHHHHHHhcCceEEEEeccHHHHHHHHHhcCCCCEEeecCCCCCCceEEEeeeccccC-----CCCCCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998 478999999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCCCCCccCCh
Q 016682 318 RVGDVINKALLEYKEEVTNGSFPGPSHSPYKMSS 351 (384)
Q Consensus 318 ~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~~~~ 351 (384)
|+.+++.+|+++|++|||+|.||+++|+ |.+++
T Consensus 235 ~l~~~i~~A~~~Y~~eV~~g~FP~~~H~-f~~~~ 267 (268)
T COG0413 235 DLGEEIRAAVKQYAAEVKSGTFPEEEHS-FHMKD 267 (268)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCcccc-eecCC
Confidence 9999999999999999999999999999 99874
No 3
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=100.00 E-value=1.6e-100 Score=732.99 Aligned_cols=261 Identities=55% Similarity=0.927 Sum_probs=224.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v 156 (384)
||+|+.+|+++|++|+||+|+|||||++|+++|++|+|+||||||+||++|||+||.+||||||++|+++|+||++++||
T Consensus 1 kk~t~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~v 80 (261)
T PF02548_consen 1 KKVTVSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFV 80 (261)
T ss_dssp ----HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEE
T ss_pred CCccHHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHH
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~ 236 (384)
++|||||||+.|++++++||.|+|||+|||+|||||| .+++++|++|+++|||||||||||||+.+++||||+||||++
T Consensus 81 v~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg-~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~ 159 (261)
T PF02548_consen 81 VADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGG-AEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQGKTAE 159 (261)
T ss_dssp EEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBS-GGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--CSTSHH
T ss_pred EecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccc-hhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEEecCHH
Confidence 9999999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhh
Q 016682 237 SAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQF 316 (384)
Q Consensus 237 ~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y 316 (384)
++.+++++|++||+||||+|||||||+++++.|+++++|||||||||++|||||||+|||||++ .++.|||+|+|
T Consensus 160 ~a~~l~~~A~ale~AGaf~ivlE~vp~~la~~It~~l~IPtIGIGaG~~cDGQvLV~~DlLG~~-----~~~~pkf~k~y 234 (261)
T PF02548_consen 160 EAEKLLEDAKALEEAGAFAIVLECVPAELAKAITEALSIPTIGIGAGPGCDGQVLVSHDLLGLF-----TDFPPKFVKQY 234 (261)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESBBHHHHHHHHHHSSS-EEEESS-STSSEEEE-HHHHTTSS-----SSS--TT---S
T ss_pred HHHHHHHHHHHHHHcCccEEeeecCHHHHHHHHHHhCCCCEEecCCCCCCCceEEeHhhhhccc-----CCCCCCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 57899999999
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCC
Q 016682 317 ARVGDVINKALLEYKEEVTNGSFPGPS 343 (384)
Q Consensus 317 ~~~~~~~~~A~~~y~~eV~~g~FP~~~ 343 (384)
+|+++.+.+|+++|++|||+|.||++|
T Consensus 235 ~~~~~~~~~A~~~y~~~V~~g~FP~~E 261 (261)
T PF02548_consen 235 ANLGEEIEEAVKAYANEVKSGSFPAPE 261 (261)
T ss_dssp STTCSSHHHHHHHHHHHHHTT-SS-GG
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999875
No 4
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=100.00 E-value=1.6e-95 Score=700.38 Aligned_cols=263 Identities=48% Similarity=0.790 Sum_probs=257.6
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
|.|+.+|+++|++|+||+|+||||++||+++|++|||+||||||++|+++||+||.+||||||++|+++|+|+++++||+
T Consensus 1 ~~t~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv 80 (263)
T TIGR00222 1 KKTTLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIV 80 (263)
T ss_pred CCcHHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHH
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~ 237 (384)
+||||+||+ +++++++||.|+++|+||++|||||| .+++++|++++++|||||||||||||+.+.+|||++||||+++
T Consensus 81 ~DmPf~sy~-~~e~a~~na~rl~~eaGa~aVkiEgg-~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~ 158 (263)
T TIGR00222 81 TDLPFMSYA-TPEQALKNAARVMQETGANAVKLEGG-EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEA 158 (263)
T ss_pred eCCCcCCCC-CHHHHHHHHHHHHHHhCCeEEEEcCc-HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHH
Confidence 999999997 69999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhh
Q 016682 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFA 317 (384)
Q Consensus 238 a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~ 317 (384)
++++|+||++|++||||+||+||||++++++|+++++|||||||||++|||||||+|||||++ .++.|||+|+|+
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l~iP~iGIGaG~~~dGQvlV~~D~lG~~-----~~~~pkf~k~y~ 233 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLECVPVELAAKITEALAIPVIGIGAGNVCDGQILVMHDALGIT-----VGHIPKFAKNYL 233 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhCCCCEEeeccCCCCCceeeeHHhhcCCC-----CCCCCCchHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999 578999999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 016682 318 RVGDVINKALLEYKEEVTNGSFPGPSHSPYK 348 (384)
Q Consensus 318 ~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~ 348 (384)
|+++.+.+|+++|++|||+|+||+++|+ |.
T Consensus 234 ~~~~~~~~a~~~y~~~V~~g~fP~~~~~-~~ 263 (263)
T TIGR00222 234 AETETIRAAVRQYMAEVRSGVFPGEEHS-FH 263 (263)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCcCC-CC
Confidence 9999999999999999999999999998 73
No 5
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-94 Score=678.13 Aligned_cols=288 Identities=79% Similarity=1.255 Sum_probs=280.6
Q ss_pred CCCCCCCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc
Q 016682 72 PQNPNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 72 ~~~~~~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga 151 (384)
|+++.+++|+.+||++|..|+||+|+|||||++|++++++|+|++|||||++|+++||++|+++++|||+|||++|+||+
T Consensus 18 ~~n~~k~~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt~~GhdtTlpiSl~e~~yH~~sV~Rga 97 (306)
T KOG2949|consen 18 PQNSNKRVTITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMTVHGHDTTLPISLEEMLYHCRSVARGA 97 (306)
T ss_pred cccccceeeHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhheeeccccceeeeHHHHHHHHHHHHccC
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCcccc
Q 016682 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 152 ~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
+++++++|||||+|+.+.++++.||+++||++|+++||||||+.+....+++|+++|||||||+|||||.++.+||||+|
T Consensus 98 ~~~llv~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvGLTPQ~v~~lGGyk~Q 177 (306)
T KOG2949|consen 98 KRPLLVGDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVGLTPQAVSVLGGYKPQ 177 (306)
T ss_pred CCceEEEecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeeccCChhhhhhccCcCcc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcc
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPK 311 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~Pk 311 (384)
||+...+.+++|.|.+||++|||.|||||||+.+++.||..++|||||||||++|||||||+||+|||..|| ..||
T Consensus 178 Gr~~~~a~~l~EtAmqLqk~Gc~svvlECvP~~~A~~iTs~lsiPTIGIGAG~~tsGQvLV~hDlLGm~g~~----~~PK 253 (306)
T KOG2949|consen 178 GRNIASAVKLVETAMQLQKAGCFSVVLECVPPPVAAAITSALSIPTIGIGAGPFTSGQVLVYHDLLGMMGHP----KTPK 253 (306)
T ss_pred chhHHHHHHHHHHHHHHHhcccceEeeecCChHHHHHHHhccCCcceeeccCCCCCceEEEehhhhhhcCCC----CCcH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999654 3799
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCccCChhhHHHHHHHHHh
Q 016682 312 FCKQFARVGDVINKALLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQK 363 (384)
Q Consensus 312 Fvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~~~~~e~~~f~~~~~~ 363 (384)
|+|+|.|+.+.+..|+.+|++||..|.||+++|++|++++++|+.|+..|++
T Consensus 254 F~Kq~~n~~~~i~~al~eYi~eVe~~~fP~~~hs~fki~~~~~~~fls~l~~ 305 (306)
T KOG2949|consen 254 FCKQYANVGEVINKALQEYIEEVEKGLFPGPSHSPFKIKESLLDGFLSELQK 305 (306)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccCCCCCCCCceecHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999875
No 6
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=2.6e-93 Score=686.28 Aligned_cols=264 Identities=53% Similarity=0.917 Sum_probs=259.1
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
++|+.+|+++|++++||+|+||||++||+++|++|||+|+||||++|++||||||+++||+||++|+++|+|++++|||+
T Consensus 1 ~~t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vv 80 (264)
T PRK00311 1 RVTISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVV 80 (264)
T ss_pred CCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHH
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~ 237 (384)
+|||||||+.|++++++|+.|+++++||++|||||| .+++++|++|+++|||||||||||||+++.+|||++||||+++
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~ 159 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEA 159 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHH
Confidence 999999999999999999999998899999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhh
Q 016682 238 AVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFA 317 (384)
Q Consensus 238 a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~ 317 (384)
++++++||++|++||||+||+||+|++++++|++++++||||||||++|||||||+|||||++ .++.|||+|+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~~D~lG~~-----~~~~pkf~k~~~ 234 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLECVPAELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGLF-----SGFKPKFVKRYA 234 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCCCceeeeHHhhcCCC-----CCCCCCchHhHh
Confidence 999999999999999999999999999999999999999999999999999999999999998 578999999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 016682 318 RVGDVINKALLEYKEEVTNGSFPGPSHSPYK 348 (384)
Q Consensus 318 ~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~ 348 (384)
|+++.+.+|+++|++|||+|+||+++|+ |.
T Consensus 235 ~~~~~~~~a~~~y~~~V~~~~fP~~~~~-~~ 264 (264)
T PRK00311 235 DLAGSIREAVKAYVAEVKSGSFPGEEHS-FK 264 (264)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCCCCC-CC
Confidence 9999999999999999999999999998 84
No 7
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=5.8e-89 Score=652.97 Aligned_cols=254 Identities=55% Similarity=0.943 Sum_probs=249.5
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
+.+|+++|++++||+|+||||++||++++++|||+|+||||++|+++|||||+++|++||++|+++|+|++++|||++||
T Consensus 1 ~~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 1 IPDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred ChhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHH
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ 240 (384)
|||||+.|++++++|+.|+++++||++|||||| .|++++|++++++|||||||||||||+++++|||++||||++++++
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~ 159 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAER 159 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHH
Confidence 999998889999999999998899999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhH
Q 016682 241 VVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVG 320 (384)
Q Consensus 241 ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~ 320 (384)
+++||++|++||||+||+||+|.+++++|++++++||||||||++|||||||+|||||++ .++.|||+|+|+|++
T Consensus 160 ~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~~D~lG~~-----~~~~p~f~k~~~~~~ 234 (254)
T cd06557 160 LLEDALALEEAGAFALVLECVPAELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGLS-----PGFKPKFVKRYADLG 234 (254)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCCCceeehHHhhcCCC-----CCCCCCcHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999 578999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 016682 321 DVINKALLEYKEEVTNGSFP 340 (384)
Q Consensus 321 ~~~~~A~~~y~~eV~~g~FP 340 (384)
+.+.+|+++|++|||+|+||
T Consensus 235 ~~~~~a~~~y~~~v~~~~fP 254 (254)
T cd06557 235 ELIREAVKAYVEEVKSGSFP 254 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999
No 8
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=7.5e-68 Score=503.51 Aligned_cols=238 Identities=37% Similarity=0.592 Sum_probs=230.3
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
.+|+++|++|+||+++||||++||+++|++|||+|+||||++|+.+|||||..+|++||++|+++|+|++++++|++|||
T Consensus 2 ~~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 2 WLLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred HhHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 46888998999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHH
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~l 241 (384)
||+|+ +++++++|+.++++ +||++|||||| .+++++|+++++++|+||+|+|++||+.+.+|||++|||+.+..+++
T Consensus 82 ~G~g~-~~~~~~~~~~~l~~-aGa~gv~iED~-~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 82 FGAYG-APTAAFELAKTFMR-AGAAGVKIEGG-EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CCCCc-CHHHHHHHHHHHHH-cCCcEEEEcCc-HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 98885 88999999999995 99999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHH
Q 016682 242 VETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGD 321 (384)
Q Consensus 242 l~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~ 321 (384)
|+||++|++||||+||+|++|.+++++|++++++|||+||+|++|||||||++|+||++ .+|.|||+|+|.|+++
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P~~~~gag~~~dgq~lv~~d~lg~~-----~~~~p~f~~~~~~~~~ 233 (240)
T cd06556 159 IADALAYAPAGADLIVMECVPVELAKQITEALAIPLAGIGAGSGTDGQFLVLADAFGIT-----GGHIPKFAKNFHAETG 233 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCCEEEEecCcCCCceEEeHHhhhccc-----CCCCCchHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999 5789999999999999
Q ss_pred HHHHHH
Q 016682 322 VINKAL 327 (384)
Q Consensus 322 ~~~~A~ 327 (384)
.+.+|+
T Consensus 234 ~~~~~~ 239 (240)
T cd06556 234 DIRAAA 239 (240)
T ss_pred HHHHHh
Confidence 999886
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=2.4e-32 Score=259.78 Aligned_cols=181 Identities=21% Similarity=0.247 Sum_probs=157.2
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
|+++|++++||+++||||+.||++++++|||+|++||+..|+.+|+||+..+|++||++|+++|+++++.| +++|+|+
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~- 78 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADT- 78 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCC-
Confidence 57889999999999999999999999999999999999999999999999999999999999999999888 9999999
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------------cchHHHHHHHHHcCCceeeeccCCcccccccCC
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgG 227 (384)
+|+ +++++.+|+.+++ ++|+++|+|||+. +|++++|++++++--. . ..
T Consensus 79 G~g-~~~~~~~~v~~~~-~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~-------------~-~~ 142 (243)
T cd00377 79 GYG-NALNVARTVRELE-EAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD-------------L-PD 142 (243)
T ss_pred CCC-CHHHHHHHHHHHH-HcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc-------------c-CC
Confidence 584 8899999998888 5999999999972 6788999999874210 0 13
Q ss_pred ccccCCCHH------HHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhcCCCEEEEcC
Q 016682 228 FRPQGKNVT------SAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 228 frvqGrt~~------~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l~IPtIGIGA 282 (384)
|.+..||+. ..++.|+|+++|++||||+||+|+. ..+.++++++++++|++..-.
T Consensus 143 ~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~ 204 (243)
T cd00377 143 FVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMT 204 (243)
T ss_pred eEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 344444432 3468999999999999999999998 488889999999999997743
No 10
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=99.97 E-value=4.3e-30 Score=244.58 Aligned_cols=184 Identities=22% Similarity=0.258 Sum_probs=155.0
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
||++|+++++++++++||+.||+++|++||++|.++....+..+|+||.+.+|++||+.+++.|++.++.| |++|+.-
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iP-v~vD~d~- 78 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIP-VIVDADT- 78 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSE-EEEE-TT-
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCc-EEEEccc-
Confidence 78899998999999999999999999999999987766666777999999999999999999999999877 9999995
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCC----------c-cchHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGG----------S-PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg----------~-~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
+|+.++.++.+++.++. ++|+.||+|||+ + ++++++|++++++. .-.+|.+.+
T Consensus 79 GyG~~~~~v~~tv~~~~-~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~---------------~~~~~~I~A 142 (238)
T PF13714_consen 79 GYGNDPENVARTVRELE-RAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDAR---------------RDPDFVIIA 142 (238)
T ss_dssp TSSSSHHHHHHHHHHHH-HCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHH---------------SSTTSEEEE
T ss_pred ccCchhHHHHHHHHHHH-HcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhc---------------cCCeEEEEE
Confidence 89766999999998888 699999999998 1 78999999999864 123488888
Q ss_pred CCHH------HHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEEcCCCCC
Q 016682 233 KNVT------SAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 233 rt~~------~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGIGAG~~c 286 (384)
||+. ..++.|+|+++|.+||||+||+|++. .+.++++++++++|++.+- ++++
T Consensus 143 RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~-~~~~ 202 (238)
T PF13714_consen 143 RTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNP-GPGT 202 (238)
T ss_dssp EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEET-TSSS
T ss_pred eccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEc-CCCC
Confidence 9876 33899999999999999999999995 7778999999999999887 4443
No 11
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=99.96 E-value=6.2e-29 Score=243.01 Aligned_cols=178 Identities=17% Similarity=0.243 Sum_probs=157.0
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
..||++++++++++++++||+.||++++++||++|. +|.+++++.+|+||.+.+|++||+.+++.|++.++.| |++|.
T Consensus 7 ~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iP-viaD~ 85 (292)
T PRK11320 7 ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLP-LLVDI 85 (292)
T ss_pred HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEEC
Confidence 569999999999999999999999999999999995 5556777899999999999999999999999999988 89999
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------------cchHHHHHHHHHcCCceeeeccCCcccccc
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------PSRITAARGIVEAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~ 224 (384)
.- ||+ ++.++.+++.++. ++||.||+|||+. ++++.+|++++++.-
T Consensus 86 d~-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--------------- 147 (292)
T PRK11320 86 DT-GFG-GAFNIARTVKSMI-KAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--------------- 147 (292)
T ss_pred CC-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc---------------
Confidence 95 896 9999999998888 6999999999962 577899999988641
Q ss_pred cCCccccCCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEE
Q 016682 225 LGGFRPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTI 278 (384)
Q Consensus 225 lgGfrvqGrt~~~----a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtI 278 (384)
-.+|.+.+||+.. .++.|+|+++|.+||||+||+|++. .+.++++++++++|++
T Consensus 148 ~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~ 206 (292)
T PRK11320 148 DPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPIL 206 (292)
T ss_pred CCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEE
Confidence 1346677777653 4799999999999999999999984 8889999999999983
No 12
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=99.96 E-value=3.7e-28 Score=236.85 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=155.5
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
..||++++++++++++++||+.||++++++||++|.++.+..+..+|+||.+.+|++||+.+++.|++.++.| |++|..
T Consensus 3 ~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iP-viaD~d 81 (285)
T TIGR02317 3 KAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLP-LLVDAD 81 (285)
T ss_pred HHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCC-EEEECC
Confidence 3599999999999999999999999999999999976665555699999999999999999999999999988 899999
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------------cchHHHHHHHHHcCCceeeeccCCccccccc
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~l 225 (384)
- ||+ ++.++.+++.++. ++||.||+|||+. ++++.+|++++++.- -
T Consensus 82 ~-GyG-~~~~v~~tv~~~~-~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~---------------~ 143 (285)
T TIGR02317 82 T-GFG-EAFNVARTVREME-DAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR---------------D 143 (285)
T ss_pred C-CCC-CHHHHHHHHHHHH-HcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc---------------C
Confidence 5 895 6999999998888 7999999999962 577899999988641 1
Q ss_pred CCccccCCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEE
Q 016682 226 GGFRPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTI 278 (384)
Q Consensus 226 gGfrvqGrt~~~----a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtI 278 (384)
.+|.+.+||+.. .++.|+|+++|.+||||+||+|++. .+.++++++++++|++
T Consensus 144 ~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~ 201 (285)
T TIGR02317 144 EDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLL 201 (285)
T ss_pred CCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 246677777653 4799999999999999999999985 7888999999999984
No 13
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=99.96 E-value=9.5e-29 Score=241.87 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=155.4
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
...||++|+++++|+++++||+.||++++++||+++.+ |.++++..+|+||.+.+|++||+.+++.|++.++.| |++|
T Consensus 5 ~~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD 83 (294)
T TIGR02319 5 ARTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVP-VIMD 83 (294)
T ss_pred HHHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCC-EEEE
Confidence 35799999999999999999999999999999999975 777777889999999999999999999999999988 9999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------------cchHHHHHHHHHcCCceeeeccCCccccc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------PSRITAARGIVEAGIAVMGHVGLTPQAIS 223 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~ 223 (384)
+.- ||+ ++.++.+++.++. ++||.||+|||+. ++++.+|++++++.-
T Consensus 84 ~dt-GyG-~~~~v~r~V~~~~-~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~-------------- 146 (294)
T TIGR02319 84 ADA-GYG-NAMSVWRATREFE-RVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARE-------------- 146 (294)
T ss_pred CCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--------------
Confidence 995 895 5555788887777 7999999999962 567888888887641
Q ss_pred ccCCccccCCCHHH----HHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCE--EEE
Q 016682 224 VLGGFRPQGKNVTS----AVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPT--IGI 280 (384)
Q Consensus 224 ~lgGfrvqGrt~~~----a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPt--IGI 280 (384)
-.+|.+.+||+.. .++.|+|+++|.+||||+||+|++. .+.+++++++++.|+ +-+
T Consensus 147 -~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~ 209 (294)
T TIGR02319 147 -DEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMV 209 (294)
T ss_pred -CCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEE
Confidence 1346677777643 4899999999999999999999984 888899999999998 444
No 14
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.3e-28 Score=234.20 Aligned_cols=184 Identities=20% Similarity=0.233 Sum_probs=159.6
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
-..||++|+++.+++++++||..||++++++||++|.++.+..+.++|+||.+..|++|++++++.|++.++.| |++|+
T Consensus 7 ~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lP-v~vD~ 85 (289)
T COG2513 7 GAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLP-VLVDI 85 (289)
T ss_pred HHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCc-eEEec
Confidence 45699999999999999999999999999999999965555555599999999999999999999999999999 88888
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------------cchHHHHHHHHHcCCceeeeccCCcccccc
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------PSRITAARGIVEAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~ 224 (384)
.- ||+ ++.++.+++.++. ++|+.||+|||+. ++++++|++++++.-
T Consensus 86 dt-GfG-~~~nvartV~~~~-~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~--------------- 147 (289)
T COG2513 86 DT-GFG-EALNVARTVRELE-QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARR--------------- 147 (289)
T ss_pred cC-CCC-cHHHHHHHHHHHH-HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhcc---------------
Confidence 85 885 5888989888877 6999999999983 789999999999762
Q ss_pred cCCccccCCCHHHH----HHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcC--CCEEEEcCC
Q 016682 225 LGGFRPQGKNVTSA----VKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQ--IPTIGIGAG 283 (384)
Q Consensus 225 lgGfrvqGrt~~~a----~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~--IPtIGIGAG 283 (384)
..+|.+.+||+... ++.|+||++|+|||||+||.|++. .+.+++++++++ +|+|-.=-|
T Consensus 148 ~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g 213 (289)
T COG2513 148 DPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFG 213 (289)
T ss_pred CCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccC
Confidence 13677788887654 789999999999999999999995 899999999998 777765333
No 15
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=99.95 E-value=1.8e-26 Score=225.52 Aligned_cols=180 Identities=16% Similarity=0.113 Sum_probs=151.0
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
..||++.++++.+++|++||+.||++++++||++|.++.+..++.+|+||.+.+|++||+.+++.|++.++.| |++|+.
T Consensus 5 ~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lP-v~aD~d 83 (290)
T TIGR02321 5 QALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIP-LIADID 83 (290)
T ss_pred HHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCC-EEEECC
Confidence 4699999999999999999999999999999999987765555669999999999999999999999999988 999999
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHcCCceeeeccCCccccc
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEAGIAVMGHVGLTPQAIS 223 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~ 223 (384)
- +|+ ++.++.+++.++. ++||.||+|||+. ++++++|++++++.-
T Consensus 84 ~-GyG-~~~~v~~tV~~~~-~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~-------------- 146 (290)
T TIGR02321 84 T-GFG-NAVNVHYVVPQYE-AAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA-------------- 146 (290)
T ss_pred C-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCC--------------
Confidence 5 896 4447888888877 7999999999972 355788888887631
Q ss_pred ccCCccccCCCHHH-----HHHHHHHHHHHHHcCCcEEEecC-C-CHHHHHHHHhhcCC--CEEEE
Q 016682 224 VLGGFRPQGKNVTS-----AVKVVETALALQEVGCFSVVLEC-V-PPPVAAAATSALQI--PTIGI 280 (384)
Q Consensus 224 ~lgGfrvqGrt~~~-----a~~ll~rAkAleeAGAf~IvlE~-V-p~ela~~It~~l~I--PtIGI 280 (384)
-.+|.+.+||+.. .+++|+|+++|.+||||+||+|+ + ..+.+++++++++. |++.+
T Consensus 147 -~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~~~ 211 (290)
T TIGR02321 147 -DRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLV 211 (290)
T ss_pred -CCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeEEe
Confidence 1246666776654 27999999999999999999997 3 58888999999884 77644
No 16
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=99.93 E-value=1.1e-24 Score=212.57 Aligned_cols=178 Identities=15% Similarity=0.096 Sum_probs=147.6
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHc---------CCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSA---------GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~A---------GiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~ 154 (384)
||++.+++++++++++||+.||++++++ |||+|.++.+..++++|+||++.+|++||+.+++.|.+.++.|
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 4667778889999999999999999999 9999976655545789999999999999999999999999888
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------------------cchHHHHHHHHHcCCceeeec
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------------------PSRITAARGIVEAGIAVMGHV 215 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------------------~e~~~~I~alv~aGIPV~gHi 215 (384)
|++|..-| .++.+..+++.+++ ++|+.||+|||+. +|++++|++++++..
T Consensus 81 -v~~D~d~G---g~~~~v~r~V~~l~-~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~------ 149 (285)
T TIGR02320 81 -IILDGDTG---GNFEHFRRLVRKLE-RRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT------ 149 (285)
T ss_pred -EEEecCCC---CCHHHHHHHHHHHH-HcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc------
Confidence 89999976 49999999998988 6999999999961 567888888887621
Q ss_pred cCCcccccccCCccccCCCHHH-----HHHHHHHHHHHHHcCCcEEEecC-C-CHHHHHHHHhhcC-----CCEEEEc
Q 016682 216 GLTPQAISVLGGFRPQGKNVTS-----AVKVVETALALQEVGCFSVVLEC-V-PPPVAAAATSALQ-----IPTIGIG 281 (384)
Q Consensus 216 GLtPQ~~~~lgGfrvqGrt~~~-----a~~ll~rAkAleeAGAf~IvlE~-V-p~ela~~It~~l~-----IPtIGIG 281 (384)
-+.|.+..||+.. .++.|+|+++|++||||+||+|+ . ..+.+++++++++ +|++.+.
T Consensus 150 ---------~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~ 218 (285)
T TIGR02320 150 ---------TEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP 218 (285)
T ss_pred ---------CCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec
Confidence 1134444554432 47899999999999999999996 3 3788899999984 6887543
No 17
>PRK15063 isocitrate lyase; Provisional
Probab=99.88 E-value=6e-22 Score=201.55 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=151.9
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE-ecchhhh----hhccCCCCcCCCHHHHHHHHHHHHcccC
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAK 152 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~m----v~lG~~dT~~VtldeMl~h~raV~Rga~ 152 (384)
+.....|+++.++++++..++|||..+|++++++|+++|. +|-.+++ ..+||||...+++++|..+++.|.+...
T Consensus 49 ~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~ 128 (428)
T PRK15063 49 RRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALR 128 (428)
T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3566779999889999999999999999999999999996 5555565 4799999999999999999999998863
Q ss_pred ------------------CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------------cch
Q 016682 153 ------------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----------------PSR 197 (384)
Q Consensus 153 ------------------~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----------------~e~ 197 (384)
.| |++|.+- ||+ ++..+.+++.+++ ++||.||+|||+. +++
T Consensus 129 ~~d~~~~~~~~~~~~d~~~P-IiADaDt-GfG-g~~nv~~~vk~~i-eAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~ 204 (428)
T PRK15063 129 RADQIQWSEGDKGYIDYFAP-IVADAEA-GFG-GVLNAFELMKAMI-EAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEA 204 (428)
T ss_pred HhhhHhhhhcccccccCCCC-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEeCCCCCccccCCCCCCeeecHHHH
Confidence 45 8888884 785 5666888887777 7999999999981 678
Q ss_pred HHHHHHHHHc----CCceeeeccCCccccccc-----------CCccccC-CCHH-------HHHHHHHHHHHHHHcCCc
Q 016682 198 ITAARGIVEA----GIAVMGHVGLTPQAISVL-----------GGFRPQG-KNVT-------SAVKVVETALALQEVGCF 254 (384)
Q Consensus 198 ~~~I~alv~a----GIPV~gHiGLtPQ~~~~l-----------gGfrvqG-rt~~-------~a~~ll~rAkAleeAGAf 254 (384)
+.+|++++.+ |+|.+ |+.++...- ....+.| ||.+ ..++.|+|+++|.+ |||
T Consensus 205 i~kL~AAr~A~d~~g~~~v----IiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD 279 (428)
T PRK15063 205 IRKLVAARLAADVMGVPTL----VIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YAD 279 (428)
T ss_pred HHHHHHHHHHHHhcCCCeE----EEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCC
Confidence 8889888853 55644 233333210 0011122 2221 25789999999999 999
Q ss_pred EEEecC-CC-HHHHHHHHhhcCC--C--EEEEcCCCC
Q 016682 255 SVVLEC-VP-PPVAAAATSALQI--P--TIGIGAGPF 285 (384)
Q Consensus 255 ~IvlE~-Vp-~ela~~It~~l~I--P--tIGIGAG~~ 285 (384)
+|++|+ .| .+.++++++.++. | +...|..|.
T Consensus 280 ~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPs 316 (428)
T PRK15063 280 LIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPS 316 (428)
T ss_pred EEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCC
Confidence 999996 66 8999999999987 8 444454443
No 18
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=99.06 E-value=1.6e-09 Score=113.33 Aligned_cols=165 Identities=12% Similarity=0.084 Sum_probs=120.2
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE-ecchhhhhh----ccCCCCcCCCHHHHHHHHHHHHcc--------
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVV----HGHDTTLPITLEEMLVHCRAVARG-------- 150 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~mv~----lG~~dT~~VtldeMl~h~raV~Rg-------- 150 (384)
|++..++|+++-.++|||..+|...+++ +|.|. .|=..++.. .++||-...+++.+...++.|.++
T Consensus 51 l~~~~~~~~~~~tlGAld~~qa~q~~ka-l~aIY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q 129 (527)
T TIGR01346 51 LTQHGDNKTYSNTFGALDPVQASQMAKY-LDAIYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQ 129 (527)
T ss_pred HHHhhhcCCceeeccccCHHHHHHHHHH-hhheehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 4444456789999999999999999999 99995 554444433 599999999999999999888776
Q ss_pred -------------------cCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------------
Q 016682 151 -------------------AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------------- 194 (384)
Q Consensus 151 -------------------a~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------------- 194 (384)
.-.| |++|.+- ||+ ++..+.+++.+++ ++||.||+|||+.
T Consensus 130 ~~~~~~~~~~~r~~~~~~D~~iP-IiaD~Dt-GyG-~~~~v~~~vk~~i-eaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~ 205 (527)
T TIGR01346 130 REARDTSVDNERSKTPYIDYLVP-IVADGDA-GFG-GATAVFKLQKAFI-ERGAAGVHWEDQLSSEKKCGHMAGKVLIPV 205 (527)
T ss_pred HHhccccchhhhccccccccccc-eEEECCC-CCC-CcHHHHHHHHHHH-HcCCeEEEEEcCCCcccccCCCCCCcccCH
Confidence 2234 8899984 885 4445888888887 7999999999961
Q ss_pred cchHHHHHHHHH----cCCceeeeccCCcccccc-----------cCCccccCCC---HHHHHHHHHHHHHHHHcCCcEE
Q 016682 195 PSRITAARGIVE----AGIAVMGHVGLTPQAISV-----------LGGFRPQGKN---VTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 195 ~e~~~~I~alv~----aGIPV~gHiGLtPQ~~~~-----------lgGfrvqGrt---~~~a~~ll~rAkAleeAGAf~I 256 (384)
++++.+|++++. .|.|++ |+.++... ..-..+.|-| .....+++.+|.++.++|++.-
T Consensus 206 ~e~v~RI~AAr~Aad~~g~d~v----I~ARTDA~~A~LitS~iD~rDh~fI~G~tn~~~~~l~~~l~~a~a~~~~Gad~~ 281 (527)
T TIGR01346 206 QEHVNRLVAARLAADIMGVPTL----VVARTDAEAATLITSDVDERDHPFITGATNPNLKPLADVLARAMASGKSGADLQ 281 (527)
T ss_pred HHHHHHHHHHHHHHHhcCCCEE----EEEecCccccccccccCCcccchhhcCCCCCCCCCHHHHHHHHHHccCCHHHHH
Confidence 567889998885 477766 33333220 0112345521 1235778999999999998854
Q ss_pred E
Q 016682 257 V 257 (384)
Q Consensus 257 v 257 (384)
-
T Consensus 282 ~ 282 (527)
T TIGR01346 282 A 282 (527)
T ss_pred H
Confidence 3
No 19
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=98.40 E-value=5e-06 Score=85.07 Aligned_cols=245 Identities=17% Similarity=0.171 Sum_probs=146.5
Q ss_pred HHHHHHhhhC---CCcEEEEecCChHHHHHHHHcCCCEEE-ecchhh--hhhcc--CCCCcCCCHHHHHHHHHHHHcc--
Q 016682 81 LTHLRQKHKN---GEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAA--MVVHG--HDTTLPITLEEMLVHCRAVARG-- 150 (384)
Q Consensus 81 ~~~lr~~k~~---g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~--mv~lG--~~dT~~VtldeMl~h~raV~Rg-- 150 (384)
...|.++.++ +..+..++|||...|.-.-+||++.|. .|=-++ ...-| |||-..-+.+-.-..++.|-++
T Consensus 51 A~kl~~ll~e~~~~~~~~tlGal~g~qa~Q~~kagl~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~ 130 (433)
T COG2224 51 AAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAGIKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALR 130 (433)
T ss_pred HHHHHHHHHHhccccchhccccCCHHHHHHHHHhhhheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHH
Confidence 3344444433 889999999999999999999999994 553333 23334 5665544444333333332221
Q ss_pred ----------cC---------CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCce
Q 016682 151 ----------AK---------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAV 211 (384)
Q Consensus 151 ----------a~---------~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV 211 (384)
.. ..+||+|-.. || .++..+.+-+.+++ |+||.||++||+. ++..-
T Consensus 131 ~aD~~q~~~~~~~~~~~~~Dy~~PIiADada-Gf-Gg~~~~~~L~K~~I-EaGaagiH~EDQ~------------a~~Kk 195 (433)
T COG2224 131 RADQIQWSEGKGPGDRQAVDYFLPIVADAEA-GF-GGPLNAFELMKAMI-EAGAAGVHFEDQL------------ASEKK 195 (433)
T ss_pred HHHHHHHHhccccccccccccccceeecccc-CC-CchHHHHHHHHHHH-HhCCceeehhhhc------------ccccc
Confidence 11 2458877664 56 46778888888888 7999999999982 34578
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcC---CCEEEEcCCCCCCc
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQ---IPTIGIGAGPFCSG 288 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~---IPtIGIGAG~~cDG 288 (384)
|||.| |- |.=.|.+-.++|..-=.+....|+.-|++==..++-+..|+..++ -|.|. ...-.+|
T Consensus 196 CGH~g----------Gk-VlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~Lits~~D~~d~~fi~--~~Rt~eG 262 (433)
T COG2224 196 CGHLG----------GK-VLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAADLITSDVDPSDGEFIT--GERTSEG 262 (433)
T ss_pred cccCC----------Ce-EeccHHHHHHHHHHHHHHHHHhCCCceEEEecchhhcccccccCCcccCCccC--CCcCCCc
Confidence 99954 31 111355556677777778889999997766566777666665442 33332 1112233
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcchhh---hhhhhH-HH----HHHHHHHHHHHhccCCCCCCCCCCcc----------CC
Q 016682 289 QVLVYHDLLGMMQHPHHAKVTPKFCK---QFARVG-DV----INKALLEYKEEVTNGSFPGPSHSPYK----------MS 350 (384)
Q Consensus 289 QvLV~~DlLG~~~~P~~~~~~PkFvk---~y~~~~-~~----~~~A~~~y~~eV~~g~FP~~~h~~y~----------~~ 350 (384)
++.+=. |+-+ .+- =+. .|+|+- -+ =.+-+++|++.|+. .||+..-. |. +.
T Consensus 263 ~y~~k~---Gie~------aI~-r~lA~ApyaDl~W~ET~~Pdle~ak~Fae~Ih~-~~P~~~La-YN~SPSFNW~~~~~ 330 (433)
T COG2224 263 FYRTKG---GIEQ------AIA-RGLAYAPYADLLWCETSTPDLEEARQFAEAIHA-KYPGKLLA-YNCSPSFNWKKNLD 330 (433)
T ss_pred eeeecC---chHH------HHH-HHHhcCcccceEEEecCCCCHHHHHHHHHHHHH-hCCcceee-ecCCCCcCcccccC
Confidence 322211 1100 000 001 122210 00 12445789999995 59987655 53 45
Q ss_pred hhhHHHHHHHHHhcC
Q 016682 351 SSDCNGFFNELQKLG 365 (384)
Q Consensus 351 ~~e~~~f~~~~~~~~ 365 (384)
++++..|...|.+.|
T Consensus 331 de~i~~Fq~el~~mG 345 (433)
T COG2224 331 DETIAKFQQELGKMG 345 (433)
T ss_pred HHHHHHHHHHHHhhe
Confidence 788999999998764
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.89 E-value=0.0014 Score=63.95 Aligned_cols=166 Identities=19% Similarity=0.288 Sum_probs=106.8
Q ss_pred CcEEEEec-CC--hHHHHHHHHcCCCEEEecchhhhhhccCCC---------------CcCCCHHHHHHHHHHHHcccCC
Q 016682 92 EPITMVTA-YD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDT---------------TLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 92 ~~I~mlTA-yD--~~sA~iae~AGiD~IlVGDSl~mv~lG~~d---------------T~~VtldeMl~h~raV~Rga~~ 153 (384)
.||.+-.. +| ....+.++++|+.++.+|.-.---..|++. -....++..+.+.+...+..+.
T Consensus 13 nPv~~aag~~~~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~ 92 (301)
T PRK07259 13 NPVMPASGTFGFGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDT 92 (301)
T ss_pred CCcEECCcCCCCCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCC
Confidence 35544432 54 345666778899999888533333344443 1124567777766655444455
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC-CCEEEe-------CC-Cc------cchHHHHHHHHHc-CCceeeeccC
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIKL-------EG-GS------PSRITAARGIVEA-GIAVMGHVGL 217 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaG-AdaVKL-------Eg-g~------~e~~~~I~alv~a-GIPV~gHiGL 217 (384)
| +++.+- ++ ++++..+.|.++ +++| +|+|-| .+ |. +...+.|+++.++ .+||.-.+.
T Consensus 93 p-~i~si~--g~--~~~~~~~~a~~~-~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~- 165 (301)
T PRK07259 93 P-IIANVA--GS--TEEEYAEVAEKL-SKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT- 165 (301)
T ss_pred c-EEEEec--cC--CHHHHHHHHHHH-hccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence 6 666662 33 688888877776 4788 999977 43 31 3346677777765 889986543
Q ss_pred CcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC----------------------C--------CHHHHH
Q 016682 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------------------V--------PPPVAA 267 (384)
Q Consensus 218 tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~----------------------V--------p~ela~ 267 (384)
| +. .++++-++.++++|+++|.+-. + .-+.++
T Consensus 166 -~--------------~~---~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~ 227 (301)
T PRK07259 166 -P--------------NV---TDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVY 227 (301)
T ss_pred -C--------------Cc---hhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHH
Confidence 2 11 2567778899999999987511 0 136778
Q ss_pred HHHhhcCCCEEEEcC
Q 016682 268 AATSALQIPTIGIGA 282 (384)
Q Consensus 268 ~It~~l~IPtIGIGA 282 (384)
+|.+.+++|+|+.|.
T Consensus 228 ~i~~~~~ipvi~~GG 242 (301)
T PRK07259 228 QVYQAVDIPIIGMGG 242 (301)
T ss_pred HHHHhCCCCEEEECC
Confidence 899999999987764
No 21
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=97.74 E-value=0.00057 Score=70.97 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=68.4
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE-ecchhhhhhccC--CCCc---CCCHHHHHHHHHHHHcccC-----
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGH--DTTL---PITLEEMLVHCRAVARGAK----- 152 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~mv~lG~--~dT~---~VtldeMl~h~raV~Rga~----- 152 (384)
|++-+.+|.+.--++++|..+|..+.++|++.++ .|=..+.+..|. ||-. --|.-++..+......-.+
T Consensus 57 lr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~ 136 (492)
T KOG1260|consen 57 LREHHNEGTVSDTLGAKDPVQASQMARAGLSAIYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIE 136 (492)
T ss_pred HHHhccCCcccccccccCchhHHHHHHhcCCeEEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhh
Confidence 3444555555447899999999999999999994 675555555555 4422 2233344444433222222
Q ss_pred ------------CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 153 ------------RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 153 ------------~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
.| ||+|-.. || .++-.+.+.+..++ |+||.+|.|||+
T Consensus 137 ~~~i~~~~~dyl~P-IIaDad~-G~-G~atnv~k~~K~fI-eaGaAGIhleDq 185 (492)
T KOG1260|consen 137 AGSIKAEESDYLIP-IIADADA-GF-GGATNVFKTVKGFI-EAGAAGIHLEDQ 185 (492)
T ss_pred hccccccccccccc-eeecCCC-CC-chHHHHHHHHHHHH-Hcccceeeeehh
Confidence 45 6654442 44 35667777778888 799999999997
No 22
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.65 E-value=0.028 Score=55.48 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=131.1
Q ss_pred HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-CCcEEE
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVG 158 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-~~~vva 158 (384)
|+..++++--+-..++||..+++. +|+.+.++|+--+....-..| .++.+...++.+++.++ .| |+.
T Consensus 8 l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~~vp-v~l 79 (282)
T TIGR01859 8 LQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMG-------GYKMAVAMVKTLIERMSIVP-VAL 79 (282)
T ss_pred HHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccC-------cHHHHHHHHHHHHHHCCCCe-EEE
Confidence 455667778999999999999874 577799999843222111111 15677888888888887 66 666
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccccCCcccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
-+.-|. +.+ . +.+.+ ++|.+.|.+-+.. +|..+..+.++ ..|++|-+=||-.+..... +.
T Consensus 80 hlDH~~---~~e-~---i~~ai-~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~-----~~ 146 (282)
T TIGR01859 80 HLDHGS---SYE-S---CIKAI-KAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDG-----VD 146 (282)
T ss_pred ECCCCC---CHH-H---HHHHH-HcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccc-----cc
Confidence 665432 333 2 24556 5899999997753 33344444444 4799999777765521111 12
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCcEEEe------------cCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhc
Q 016682 232 GKNVTSAVKVVETALALQE-VGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLG 298 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAlee-AGAf~Ivl------------E~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG 298 (384)
| +... -.-.++|+.+.+ .|+|.|.+ +.+.-+..+.|.+.++||+..||+..-.|-++.=.-+. |
T Consensus 147 g-~~~~-~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~-G 223 (282)
T TIGR01859 147 E-KEAE-LADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKL-G 223 (282)
T ss_pred c-cccc-cCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHc-C
Confidence 2 0000 011233344443 69999884 23457889999999999999998665555554333222 4
Q ss_pred CCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 299 MMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 299 ~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
.. + +.-+-++.....+++++|.++
T Consensus 224 i~------k-----iNv~T~l~~a~~~~~~~~~~~ 247 (282)
T TIGR01859 224 IA------K-----INIDTDCRIAFTAAIRKVLTE 247 (282)
T ss_pred CC------E-----EEECcHHHHHHHHHHHHHHHh
Confidence 43 1 223445555666667666644
No 23
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.57 E-value=0.0055 Score=54.43 Aligned_cols=124 Identities=26% Similarity=0.245 Sum_probs=79.2
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc--CCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga--~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
..++.+.++|+|.+++.-..... ++. +.+++..|.+.|++.+ +.|+++-+.|... .+++...+. .|+.
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~----~~~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--~~~~~~~~~-~~~~ 138 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSL----KEG---DWEEVLEEIAAVVEAADGGLPLKVILETRGL--KTADEIAKA-ARIA 138 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHH----hCC---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC--CCHHHHHHH-HHHH
Confidence 46788889999999875333211 111 4789999999999884 7888888889754 366655443 4555
Q ss_pred HHhCCCEEEeCCCcc---chHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 181 KEGGMDAIKLEGGSP---SRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 181 keaGAdaVKLEgg~~---e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
++.|+++||...+.. ...+.++.+.+. ++||+. .||.. ..+.+..+..+||+
T Consensus 139 ~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~-----------~gg~~-----------~~~~~~~~~~~Ga~ 196 (201)
T cd00945 139 AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKA-----------AGGIK-----------TLEDALAAIEAGAD 196 (201)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEE-----------ECCCC-----------CHHHHHHHHHhccc
Confidence 689999999976511 134555555543 345542 34432 12344555566998
Q ss_pred EEEe
Q 016682 255 SVVL 258 (384)
Q Consensus 255 ~Ivl 258 (384)
++.+
T Consensus 197 g~~~ 200 (201)
T cd00945 197 GIGT 200 (201)
T ss_pred eeec
Confidence 8753
No 24
>PRK08185 hypothetical protein; Provisional
Probab=97.56 E-value=0.011 Score=58.66 Aligned_cols=216 Identities=13% Similarity=0.159 Sum_probs=136.6
Q ss_pred HHHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 83 HLRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 83 ~lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
-|...++++--+-..|+||..+++. +|+.+.++|+-......-..| .++...++.+++.++.| |+.
T Consensus 4 ~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---------~~~~~~~~~~a~~~~vP-V~l 73 (283)
T PRK08185 4 LLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG---------DNFFAYVRERAKRSPVP-FVI 73 (283)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc---------HHHHHHHHHHHHHCCCC-EEE
Confidence 3566677888999999999999874 578899999844332222222 23677777788888777 777
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccccCCcccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
-+.-| . +.+.. .+.+ ++|.+.|.+-+.. +|..+..+.++ ..||+|.+=||..+.... ....
T Consensus 74 HLDHg-~--~~e~i----~~ai-~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~----~~~~ 141 (283)
T PRK08185 74 HLDHG-A--TIEDV----MRAI-RCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGT----SIEG 141 (283)
T ss_pred ECCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccc----cccc
Confidence 77763 2 44444 3556 5899999997763 33334344443 579999988887663221 1111
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCcEEEe---------c-----CCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhh
Q 016682 232 GKNVTSAVKVVETALALQEV-GCFSVVL---------E-----CVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDL 296 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeA-GAf~Ivl---------E-----~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~Dl 296 (384)
|.+ +....-.++|+.+.+. |+|+|-+ + .+.-++.++|.+.+++|+.-+|+..-.|=|+.=.- =
T Consensus 142 ~~~-~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai-~ 219 (283)
T PRK08185 142 GVS-EIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESV-Q 219 (283)
T ss_pred ccc-cccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHH-H
Confidence 211 0111123445555555 9999998 2 24578999999999999999987766666543111 1
Q ss_pred hcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 297 LGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 297 LG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
+|.. | +.-+-++.....+++++|..+
T Consensus 220 ~GI~----------K-iNi~T~l~~a~~~~~~~~~~~ 245 (283)
T PRK08185 220 LGVG----------K-INISSDMKYAFFKKVREILSD 245 (283)
T ss_pred CCCe----------E-EEeChHHHHHHHHHHHHHHHh
Confidence 3443 1 233456666667777777654
No 25
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.53 E-value=0.011 Score=57.55 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=99.3
Q ss_pred cEEEEecCC---hHHHHHHHHcCCCEEEecchhhhhhccCCCC---------------cCCCHHHHHHHHHHHHcccCCC
Q 016682 93 PITMVTAYD---YPSAVHLDSAGIDICLVGDSAAMVVHGHDTT---------------LPITLEEMLVHCRAVARGAKRP 154 (384)
Q Consensus 93 ~I~mlTAyD---~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT---------------~~VtldeMl~h~raV~Rga~~~ 154 (384)
||.+-..+| ....++++.-|+.++.+|.-..--..|.+.. ....+++++.+.+...+..+.|
T Consensus 12 P~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p 91 (296)
T cd04740 12 PVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTP 91 (296)
T ss_pred CCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCc
Confidence 554444443 2233333333488887774222222343321 1234678887777665544555
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC-------------Cc-cchHHHHHHHHHc-CCceeeeccCCc
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG-------------GS-PSRITAARGIVEA-GIAVMGHVGLTP 219 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg-------------g~-~e~~~~I~alv~a-GIPV~gHiGLtP 219 (384)
+++.+- + .++++..+.|.++ +++|+|+|-|-- +. +...+.|++++++ ++||+--+ +|
T Consensus 92 -~ivsi~--g--~~~~~~~~~a~~~-~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl--~~ 163 (296)
T cd04740 92 -VIASIA--G--STVEEFVEVAEKL-ADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL--TP 163 (296)
T ss_pred -EEEEEe--c--CCHHHHHHHHHHH-HHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe--CC
Confidence 666652 2 2577777666655 578999997721 11 3345677788776 89998542 22
Q ss_pred ccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC----------------------C------C--HHHHHHH
Q 016682 220 QAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------------------V------P--PPVAAAA 269 (384)
Q Consensus 220 Q~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~----------------------V------p--~ela~~I 269 (384)
. . .++.+-++.++++||++|.+-. . | -+.++.|
T Consensus 164 ~--------------~---~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i 226 (296)
T cd04740 164 N--------------V---TDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQV 226 (296)
T ss_pred C--------------c---hhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHH
Confidence 1 1 2567778899999999987620 0 0 2677888
Q ss_pred HhhcCCCEEEEcC
Q 016682 270 TSALQIPTIGIGA 282 (384)
Q Consensus 270 t~~l~IPtIGIGA 282 (384)
.+.+++|+|+.|.
T Consensus 227 ~~~~~ipii~~GG 239 (296)
T cd04740 227 YKAVEIPIIGVGG 239 (296)
T ss_pred HHhcCCCEEEECC
Confidence 9999999987653
No 26
>PRK06498 isocitrate lyase; Provisional
Probab=97.51 E-value=0.00087 Score=70.58 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=81.0
Q ss_pred CCCHHHHHHhhhC-----CCcEEEEecCChHHHHHHHHc---CC-----CEE-Eecchhhhhh--cc-CCCCcC------
Q 016682 78 RVTLTHLRQKHKN-----GEPITMVTAYDYPSAVHLDSA---GI-----DIC-LVGDSAAMVV--HG-HDTTLP------ 134 (384)
Q Consensus 78 ~~t~~~lr~~k~~-----g~~I~mlTAyD~~sA~iae~A---Gi-----D~I-lVGDSl~mv~--lG-~~dT~~------ 134 (384)
+.|...+++.... ...+--++||+...|.-.-.+ |+ +.| |.|=-+++.. .| |||-..
T Consensus 47 ~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~~~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sV 126 (531)
T PRK06498 47 KYTAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTKRRYLYLSGWMVAALRSEFGPLPDQSMHEKTSV 126 (531)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCccceEEehhhHHHhhhhccCCCCCcccCccccH
Confidence 4566667766555 457778999999999888788 88 888 5664333322 22 565332
Q ss_pred -CCHHHHHHH---HHHH-----------Hc--cc-----------C-----CCcEEEeCCCCCCcCCHHHHHHHHHHHHH
Q 016682 135 -ITLEEMLVH---CRAV-----------AR--GA-----------K-----RPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 135 -VtldeMl~h---~raV-----------~R--ga-----------~-----~~~vvaDmPfgsY~~s~e~av~nA~rl~k 181 (384)
--.+++-.. +-+| .+ |. + ..+||+|..- || .++..+.+.+.+++
T Consensus 127 P~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~~~~~iPIIADaDt-Gf-G~~~nv~r~vk~~i- 203 (531)
T PRK06498 127 PALIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNFETHVVPIIADIDA-GF-GNEEATYLLAKKMI- 203 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhccccccccccceEEEcCC-CC-CcHHHHHHHHHHHH-
Confidence 122222111 0000 11 21 1 2247777774 67 47888888887776
Q ss_pred HhCCCEEEeCCCc-----------------cchHHHHHHHHHc
Q 016682 182 EGGMDAIKLEGGS-----------------PSRITAARGIVEA 207 (384)
Q Consensus 182 eaGAdaVKLEgg~-----------------~e~~~~I~alv~a 207 (384)
++||.||.|||+. ++++.+|++++.+
T Consensus 204 eAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A 246 (531)
T PRK06498 204 EAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYA 246 (531)
T ss_pred HhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHH
Confidence 7999999999972 6788899998853
No 27
>PLN02892 isocitrate lyase
Probab=97.44 E-value=0.00047 Score=73.51 Aligned_cols=125 Identities=13% Similarity=0.150 Sum_probs=83.0
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecch-hh----hhhccCCCCcCCCHHHHHHHHHHH-----------
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDS-AA----MVVHGHDTTLPITLEEMLVHCRAV----------- 147 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDS-l~----mv~lG~~dT~~VtldeMl~h~raV----------- 147 (384)
|++..++|.++--++|.|...+.-..+ |.+.|.|+-. .+ .+--=+||-..-+++-+-..++.|
T Consensus 70 L~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q 148 (570)
T PLN02892 70 LKTHQANGTASRTFGALDPVQVAQMAK-HLDTIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQ 148 (570)
T ss_pred HHHhhccCCceeeccCCcHHHHHHHHc-cCceEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHH
Confidence 444445678999999999999998777 9999965422 11 122335555444444332222222
Q ss_pred -----------HcccC----CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------------c
Q 016682 148 -----------ARGAK----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----------------P 195 (384)
Q Consensus 148 -----------~Rga~----~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----------------~ 195 (384)
+.+.+ ..+|++|++- ||+ ++.++++++.+++ ++||.||+|||+. +
T Consensus 149 ~~~r~~~~~~~r~~~~~~Dyl~PIiADaEt-GyG-~~~~~~~~vk~~i-eaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~ 225 (570)
T PLN02892 149 REARMSMSREERARTPYVDYLKPIIADGDT-GFG-GTTATVKLCKLFV-ERGAAGVHIEDQSSVTKKCGHMGGKVLVATS 225 (570)
T ss_pred HHHHhccCHHHhcCCCccccccceeeecCC-CCC-ccHHHHHHHHHHH-HcCCeEEEEECCCCcccccCCCCCCcccCHH
Confidence 11332 2358899994 895 5555669988888 7999999999961 4
Q ss_pred chHHHHHHHHHc----CCcee
Q 016682 196 SRITAARGIVEA----GIAVM 212 (384)
Q Consensus 196 e~~~~I~alv~a----GIPV~ 212 (384)
+++.+|++++.+ |+|.+
T Consensus 226 e~v~RI~AAR~aad~~G~d~v 246 (570)
T PLN02892 226 EHINRLVAARLQFDVMGVETV 246 (570)
T ss_pred HHHHHHHHHHHHHHhcCCCeE
Confidence 678888888864 66765
No 28
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.39 E-value=0.018 Score=55.72 Aligned_cols=158 Identities=19% Similarity=0.217 Sum_probs=99.5
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCC------------------------CcCCCHHHHHHHHHHHHcc-cCCCc
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDT------------------------TLPITLEEMLVHCRAVARG-AKRPL 155 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~d------------------------T~~VtldeMl~h~raV~Rg-a~~~~ 155 (384)
+....+.++++|+.++.++.-.---..|++. -.....++.+...+...+. .+.|
T Consensus 22 ~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~p- 100 (289)
T cd02810 22 TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQP- 100 (289)
T ss_pred CHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCCCe-
Confidence 4455666777888888776433222223321 1234577777777666554 3455
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------------cchHHHHHHHHHc-CCceeeeccCCccc
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------------PSRITAARGIVEA-GIAVMGHVGLTPQA 221 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------------~e~~~~I~alv~a-GIPV~gHiGLtPQ~ 221 (384)
+++.+- + .++++..+.+.++. +.|+|+|-|--+. +...+.|+++.++ ++||+.-++ |
T Consensus 101 vi~si~--g--~~~~~~~~~a~~~~-~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~--~-- 171 (289)
T cd02810 101 LIASVG--G--SSKEDYVELARKIE-RAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS--P-- 171 (289)
T ss_pred EEEEec--c--CCHHHHHHHHHHHH-HhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC--C--
Confidence 666653 2 26788888777665 6899999875321 2344667777765 888875322 1
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------------------------------CHHHHHHHHh
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------------------------------PPPVAAAATS 271 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------------------------------p~ela~~It~ 271 (384)
+ -+ .+++.+.+++++++|||.|.+-.- .-+.+++|.+
T Consensus 172 -----~-----~~---~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~ 238 (289)
T cd02810 172 -----Y-----FD---LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAA 238 (289)
T ss_pred -----C-----CC---HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHH
Confidence 1 12 346778888999999999997521 0245688888
Q ss_pred hc--CCCEEEEc
Q 016682 272 AL--QIPTIGIG 281 (384)
Q Consensus 272 ~l--~IPtIGIG 281 (384)
.+ ++|+|+.|
T Consensus 239 ~~~~~ipiia~G 250 (289)
T cd02810 239 RLQLDIPIIGVG 250 (289)
T ss_pred hcCCCCCEEEEC
Confidence 88 89988755
No 29
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.38 E-value=0.0062 Score=60.36 Aligned_cols=135 Identities=19% Similarity=0.219 Sum_probs=91.8
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCc-CCCHHHHHHHHHHHHcccCCC-cEE-EeCCCCCCcCCHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRP-LLV-GDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~-~VtldeMl~h~raV~Rga~~~-~vv-aDmPfgsY~~s~e~av~nA~rl~ 180 (384)
+.+-++++|+-.|.+-|...--.-|+..+. .++.+||+...++++.+...+ |++ +=+.--.- ...+++++-+....
T Consensus 93 tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~-~g~deAI~Ra~ay~ 171 (285)
T TIGR02317 93 TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAV-EGLDAAIERAKAYV 171 (285)
T ss_pred HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccc-cCHHHHHHHHHHHH
Confidence 356788999999999999865556776554 679999999999998876543 444 43332111 25889999887666
Q ss_pred HHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 181 KEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 181 keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
++|||+|.+||- . ..+.|+.++++ .+|++..+ +. -|+|.. -..+.|.+.|...|.+.
T Consensus 172 -~AGAD~vfi~g~-~-~~e~i~~~~~~i~~Pl~~n~---------~~----~~~~p~------~s~~eL~~lGv~~v~~~ 229 (285)
T TIGR02317 172 -EAGADMIFPEAL-T-SLEEFRQFAKAVKVPLLANM---------TE----FGKTPL------FTADELREAGYKMVIYP 229 (285)
T ss_pred -HcCCCEEEeCCC-C-CHHHHHHHHHhcCCCEEEEe---------cc----CCCCCC------CCHHHHHHcCCcEEEEc
Confidence 799999999985 2 45556777654 46776442 11 022210 02566788888888876
Q ss_pred CC
Q 016682 260 CV 261 (384)
Q Consensus 260 ~V 261 (384)
.-
T Consensus 230 ~~ 231 (285)
T TIGR02317 230 VT 231 (285)
T ss_pred hH
Confidence 54
No 30
>PRK06801 hypothetical protein; Provisional
Probab=97.31 E-value=0.032 Score=55.37 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=120.6
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~ 152 (384)
+++.++ ...++++--+-..|+||+.+++. +|+.+.++|+ ++.+.. ....++.+...++..++.++
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~---------~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF---------KYISLESLVEAVKFEAARHD 74 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh---------hcCCHHHHHHHHHHHHHHCC
Confidence 455554 44566778889999999999875 5777999997 433221 12568889999999999998
Q ss_pred CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCccccccc
Q 016682 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 153 ~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~l 225 (384)
.| |+.-+.-|. +.+. + .+.+ ++|++.|.+-|.. +|.....+.++ ..|++|.+=+|-..+.....
T Consensus 75 vp-V~lHlDH~~---~~e~-i---~~Ai-~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v 145 (286)
T PRK06801 75 IP-VVLNLDHGL---HFEA-V---VRAL-RLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGA 145 (286)
T ss_pred CC-EEEECCCCC---CHHH-H---HHHH-HhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCc
Confidence 88 777777632 3333 3 3556 5899999996642 33444444443 58999977777655433210
Q ss_pred CCccccCCCHHHHHHHHHHHHHHH-HcCCcEEEe------------cCCCHHHHHHHHhhcCCCEEEEcCCCCCC
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQ-EVGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGAGPFCS 287 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAle-eAGAf~Ivl------------E~Vp~ela~~It~~l~IPtIGIGAG~~cD 287 (384)
..+.+......-.++|+.+. +.|+|.|=+ +.+.-+..+.|.+.+++|+.-+|+..-.|
T Consensus 146 ----~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~ 216 (286)
T PRK06801 146 ----LYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISD 216 (286)
T ss_pred ----ccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 01110000111123444444 679999988 23557889999999999998888654434
No 31
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.29 E-value=0.02 Score=57.00 Aligned_cols=158 Identities=19% Similarity=0.206 Sum_probs=99.9
Q ss_pred HHHhhhCCCcEE---EEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 84 LRQKHKNGEPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 84 lr~~k~~g~~I~---mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
|.++..=.-||+ |-.+-|...|..+-++|.=-++- .| ..+.+++-...+.++..++.| +-+++
T Consensus 4 l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~--------~~-----~~~~~~l~~~i~~~~~~t~~p-fgvn~ 69 (307)
T TIGR03151 4 LCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIG--------AG-----NAPPDVVRKEIRKVKELTDKP-FGVNI 69 (307)
T ss_pred hhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceec--------cc-----cCCHHHHHHHHHHHHHhcCCC-cEEee
Confidence 333344445766 44566777777777887322111 11 235677767777776656666 45555
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHH
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ 240 (384)
.+.. .+.++. .+++.+.|++.|-+-+|.. .+.|+.+.+.|++|+..++ +
T Consensus 70 ~~~~--~~~~~~----~~~~~~~~v~~v~~~~g~p--~~~i~~lk~~g~~v~~~v~-----------------s------ 118 (307)
T TIGR03151 70 MLLS--PFVDEL----VDLVIEEKVPVVTTGAGNP--GKYIPRLKENGVKVIPVVA-----------------S------ 118 (307)
T ss_pred ecCC--CCHHHH----HHHHHhCCCCEEEEcCCCc--HHHHHHHHHcCCEEEEEcC-----------------C------
Confidence 4421 122332 3444578999999877632 3588999999999985321 1
Q ss_pred HHHHHHHHHHcCCcEEEecCC----------CHHHHHHHHhhcCCCEEEEcCCCCCCch
Q 016682 241 VVETALALQEVGCFSVVLECV----------PPPVAAAATSALQIPTIGIGAGPFCSGQ 289 (384)
Q Consensus 241 ll~rAkAleeAGAf~IvlE~V----------p~ela~~It~~l~IPtIGIGAG~~cDGQ 289 (384)
++.|+.++++|||.|++++. +-++..++.+.+++|+|+- |.-.|+.
T Consensus 119 -~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaa--GGI~~~~ 174 (307)
T TIGR03151 119 -VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAA--GGIADGR 174 (307)
T ss_pred -HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEE--CCCCCHH
Confidence 34578888999999999653 3588899999999998754 3333444
No 32
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.28 E-value=0.065 Score=52.99 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=115.2
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~ 153 (384)
+|+.++ ...++++--+-..|+||..+++. +|+.+.++|+--.... .-| ..++.+...++..++.++.
T Consensus 4 v~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~---~~~-----~~~~~~~~~~~~~a~~~~v 75 (281)
T PRK06806 4 VQMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR---LNH-----SPLHLIGPLMVAAAKQAKV 75 (281)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch---hcc-----CChHHHHHHHHHHHHHCCC
Confidence 455554 44566777899999999999874 5778999998332111 111 3455555556666777777
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccccC
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lg 226 (384)
| |+.-+.-| . +.+.+ .+.+ ++|++.|.+-+.. +|..+..+.++ ..|++|-+-+|-.+|...-
T Consensus 76 p-v~lHlDH~-~--~~e~i----~~Al-~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~-- 144 (281)
T PRK06806 76 P-VAVHFDHG-M--TFEKI----KEAL-EIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG-- 144 (281)
T ss_pred C-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC--
Confidence 7 77777763 2 44433 4567 5899999998753 33333333333 5799997554433333211
Q ss_pred CccccCCCHHHHHHHHHHHHHH-HHcCCcEEEe------------cCCCHHHHHHHHhhcCCCEEEEcCCCCCC
Q 016682 227 GFRPQGKNVTSAVKVVETALAL-QEVGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGAGPFCS 287 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAl-eeAGAf~Ivl------------E~Vp~ela~~It~~l~IPtIGIGAG~~cD 287 (384)
-...|.+- .-.++|+.+ ++.|+|.|-+ +.+.-+..++|.+.+++|+.-||+..-++
T Consensus 145 -~~~~g~s~----t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~ 213 (281)
T PRK06806 145 -SEDIEMLL----TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISP 213 (281)
T ss_pred -ccccccee----CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 11234211 112334444 3479999988 23457899999999999999999663333
No 33
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.25 E-value=0.028 Score=52.36 Aligned_cols=140 Identities=19% Similarity=0.210 Sum_probs=91.0
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
-|...++.+.++|. +|+=++..++.++.....+.+++-.+.+ +.+.+=+..++...++.+ +.
T Consensus 14 ~~~~~~~~~~~~G~-------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~i~~~~~~~~~~~~----~~ 75 (236)
T cd04730 14 STPELAAAVSNAGG-------------LGFIGAGYLTPEALRAEIRKIRALTDKP-FGVNLLVPSSNPDFEALL----EV 75 (236)
T ss_pred CCHHHHHHHHhCCC-------------ccccCCCCCCHHHHHHHHHHHHHhcCCC-eEEeEecCCCCcCHHHHH----HH
Confidence 47888888888872 2222556678888888888887644334 233332211101233332 34
Q ss_pred HHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
.++.|+++|.|-++ +..+.++.+.+.+++++.-+ .+ .++++.++++|++.|.+.
T Consensus 76 ~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i~~v-----------------~~-------~~~~~~~~~~gad~i~~~ 129 (236)
T cd04730 76 ALEEGVPVVSFSFG--PPAEVVERLKAAGIKVIPTV-----------------TS-------VEEARKAEAAGADALVAQ 129 (236)
T ss_pred HHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEEEeC-----------------CC-------HHHHHHHHHcCCCEEEEe
Confidence 45789999999765 45677888888888875321 11 145677788999999986
Q ss_pred CC------------CHHHHHHHHhhcCCCEEEEcCC
Q 016682 260 CV------------PPPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 260 ~V------------p~ela~~It~~l~IPtIGIGAG 283 (384)
+. ..+.++++.+.+++|++.+|.=
T Consensus 130 ~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 130 GAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred CcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 52 2467888888899999976643
No 34
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.24 E-value=0.027 Score=50.03 Aligned_cols=141 Identities=15% Similarity=0.143 Sum_probs=90.1
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC-CCcCCHHHHHHHHHHHHHHh
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg-sY~~s~e~av~nA~rl~kea 183 (384)
++.+-+.|+|.|.+.- +++..++....+.+.| +++-...+ ++ ...+++++.+.+.. +.
T Consensus 19 ~~~~~~~gv~gi~~~g------------------~~i~~~~~~~~~~~~~-v~~~v~~~~~~-~~~~~~~~~a~~a~-~~ 77 (201)
T cd00945 19 CDEAIEYGFAAVCVNP------------------GYVRLAADALAGSDVP-VIVVVGFPTGL-TTTEVKVAEVEEAI-DL 77 (201)
T ss_pred HHHHHHhCCcEEEECH------------------HHHHHHHHHhCCCCCe-EEEEecCCCCC-CcHHHHHHHHHHHH-Hc
Confidence 3445668999998762 6676665555443345 44333322 23 34788999887776 79
Q ss_pred CCCEEEeCCC--------ccchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcC
Q 016682 184 GMDAIKLEGG--------SPSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (384)
Q Consensus 184 GAdaVKLEgg--------~~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG 252 (384)
|||+|.+-.- .++..+.++.+.++ ++||+.. ..|... .+. +.+.+.++.+++.|
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy--~~p~~~----------~~~---~~~~~~~~~~~~~g 142 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI--LETRGL----------KTA---DEIAKAARIAAEAG 142 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE--EECCCC----------CCH---HHHHHHHHHHHHhC
Confidence 9999998632 13456777788876 9999854 223221 232 34555567678899
Q ss_pred CcEEEecCC------CHHHHHHHHhhc--CCCEEEEc
Q 016682 253 CFSVVLECV------PPPVAAAATSAL--QIPTIGIG 281 (384)
Q Consensus 253 Af~IvlE~V------p~ela~~It~~l--~IPtIGIG 281 (384)
+++|=.-.- ..+..+.|.+.+ ++|++..|
T Consensus 143 ~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 143 ADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 999865543 456667888877 56776555
No 35
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0057 Score=60.79 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccC-CCCcCCCHHHHHHHHHHHHcccC-CCcEE-EeCCCCCCcCCHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGH-DTTLPITLEEMLVHCRAVARGAK-RPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~-~dT~~VtldeMl~h~raV~Rga~-~~~vv-aDmPfgsY~~s~e~av~nA~rl 179 (384)
-+.+.++++|+-.|.+-|..+--..|| +....++.+||+...++++...+ ..|++ +=...-.-+ ..+++++-+...
T Consensus 97 rtV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~-~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVE-GLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhc-cHHHHHHHHHHH
Confidence 467889999999999999999988899 77889999999999999998885 34554 555543443 478999988766
Q ss_pred HHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
. |+|||+|..|+= . ..+.|++++++ .+|+..+ .+ -.|+|. +-....|+++|...|..
T Consensus 176 ~-eAGAD~if~~al-~-~~e~i~~f~~av~~pl~~N---------~t----~~g~tp------~~~~~~L~~~Gv~~V~~ 233 (289)
T COG2513 176 V-EAGADAIFPEAL-T-DLEEIRAFAEAVPVPLPAN---------IT----EFGKTP------LLTVAELAELGVKRVSY 233 (289)
T ss_pred H-HcCCcEEccccC-C-CHHHHHHHHHhcCCCeeeE---------ee----ccCCCC------CcCHHHHHhcCceEEEE
Confidence 6 899999999995 3 36667777764 3445433 22 124442 11346789999999998
Q ss_pred cCCC
Q 016682 259 ECVP 262 (384)
Q Consensus 259 E~Vp 262 (384)
...+
T Consensus 234 ~~~~ 237 (289)
T COG2513 234 GLTA 237 (289)
T ss_pred CcHH
Confidence 8776
No 36
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.19 E-value=0.01 Score=55.70 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCC--c---cchHHHHHHHH----HcCCceeeeccCCcccccccCCccccCCCHHHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGG--S---PSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg--~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a 238 (384)
+.+.-+..+.+.+ +.||++|.+... . .+..+.++.++ +.|+|++...-+ .|...-+..+.
T Consensus 74 ~~~~~~~~v~~a~-~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~-------~g~~~~~~~~~--- 142 (235)
T cd00958 74 NDKVLVASVEDAV-RLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP-------RGPAVKNEKDP--- 142 (235)
T ss_pred CchhhhcCHHHHH-HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec-------cCCcccCccCH---
Confidence 4444445555666 689999966531 1 23333444444 579999864211 11111122232
Q ss_pred HHHHHH-HHHHHHcCCcEEEecCC-CHHHHHHHHhhcCCCEEEEcC-CCCCCch
Q 016682 239 VKVVET-ALALQEVGCFSVVLECV-PPPVAAAATSALQIPTIGIGA-GPFCSGQ 289 (384)
Q Consensus 239 ~~ll~r-AkAleeAGAf~IvlE~V-p~ela~~It~~l~IPtIGIGA-G~~cDGQ 289 (384)
+.+++ ++...++|||.|.+... ..+..+++++.+++|++.+|+ +..++.+
T Consensus 143 -~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~ 195 (235)
T cd00958 143 -DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKKDSEEE 195 (235)
T ss_pred -HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCCCCHHH
Confidence 34555 88899999999999754 368889999999999988875 4444444
No 37
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.07 E-value=0.017 Score=57.57 Aligned_cols=133 Identities=18% Similarity=0.223 Sum_probs=92.9
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCC-cCCCHHHHHHHHHHHHcccCC-CcEE-E--eCCCCCCcCCHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKR-PLLV-G--DLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT-~~VtldeMl~h~raV~Rga~~-~~vv-a--DmPfgsY~~s~e~av~nA~rl 179 (384)
.+-++++|+-.|.+-|...--.-|+..+ ..++.+||+...++++.+... .|++ + |--. . ...+++++-+.+.
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~-~--~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA-V--EGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc-c--cCHHHHHHHHHHH
Confidence 5778899999999999886556677654 467999999999999887543 3554 4 5432 2 3588999998766
Q ss_pred HHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 180 LKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
. ++|||+|.+||- ...+.|++++++ ..|++.++ +. -|++.. -..+.|.+.|...|..
T Consensus 176 ~-eAGAD~ifi~~~--~~~~~i~~~~~~~~~Pl~~n~---------~~----~~~~p~------~s~~~L~~lGv~~v~~ 233 (292)
T PRK11320 176 V-EAGADMIFPEAM--TELEMYRRFADAVKVPILANI---------TE----FGATPL------FTTEELASAGVAMVLY 233 (292)
T ss_pred H-HcCCCEEEecCC--CCHHHHHHHHHhcCCCEEEEe---------cc----CCCCCC------CCHHHHHHcCCcEEEE
Confidence 6 799999999984 346677777753 56776431 10 122210 0256688899998887
Q ss_pred cCCC
Q 016682 259 ECVP 262 (384)
Q Consensus 259 E~Vp 262 (384)
..-.
T Consensus 234 ~~~~ 237 (292)
T PRK11320 234 PLSA 237 (292)
T ss_pred ChHH
Confidence 7544
No 38
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.07 E-value=0.032 Score=52.14 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE---EeC---CCCCCcCCHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDL---PFGTYESSTNQAVDTA 176 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv---aDm---PfgsY~~s~e~av~nA 176 (384)
..|+.++++|+..+.++ + ....+.|++.++.|++. -|+ |+--| .+.+++
T Consensus 27 ~~a~a~~~~G~~~~~~~----------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~-~~~~~v---- 81 (221)
T PRK01130 27 AMALAAVQGGAVGIRAN----------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYIT-PTLKEV---- 81 (221)
T ss_pred HHHHHHHHCCCeEEEcC----------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceEC-CCHHHH----
Confidence 45677889998877763 1 23446666667788762 242 34233 234443
Q ss_pred HHHHHHhCCCEEEeCCCc------cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 177 VRILKEGGMDAIKLEGGS------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~------~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
+..+++|||.|-+-... .+..+.++.+.+ .|++++.= ..|. ++++.++
T Consensus 82 -~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~-----------------v~t~-------ee~~~a~ 136 (221)
T PRK01130 82 -DALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD-----------------CSTL-------EEGLAAQ 136 (221)
T ss_pred -HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe-----------------CCCH-------HHHHHHH
Confidence 44458999988773321 355677888888 89888731 1132 3456789
Q ss_pred HcCCcEEEecC----------C--CHHHHHHHHhhcCCCEEEEc
Q 016682 250 EVGCFSVVLEC----------V--PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 250 eAGAf~IvlE~----------V--p~ela~~It~~l~IPtIGIG 281 (384)
++|++.|.+.. . ..+.+++|.+.+++|++..|
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~G 180 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEG 180 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEEC
Confidence 99999997631 1 26888999999999998644
No 39
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.03 E-value=0.071 Score=52.05 Aligned_cols=153 Identities=20% Similarity=0.336 Sum_probs=95.6
Q ss_pred ChHHHHHHHHcCCCEEEecch------------------hhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC
Q 016682 101 DYPSAVHLDSAGIDICLVGDS------------------AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDS------------------l~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf 162 (384)
+....+.+.+.|++++.++.- .-....|+++- ..+..+.+.+...+..+.| +++-+ +
T Consensus 24 ~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~---g~~~~~~~~~~~~~~~~~p-l~~qi-~ 98 (300)
T TIGR01037 24 GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP---GVEAFLEELKPVREEFPTP-LIASV-Y 98 (300)
T ss_pred CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc---CHHHHHHHHHHHhccCCCc-EEEEe-e
Confidence 444556566779998888421 12245566553 4566666655544544455 66665 1
Q ss_pred CCCcCCHHHHHHHHHHHHHHh--CCCEEEeCCCc--------------cchHHHHHHHHHc-CCceeeeccCCccccccc
Q 016682 163 GTYESSTNQAVDTAVRILKEG--GMDAIKLEGGS--------------PSRITAARGIVEA-GIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~kea--GAdaVKLEgg~--------------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~l 225 (384)
+ .++++..+.|.++ +++ ++|+|-|-=+. +...+.|++++++ ++||..=+. |
T Consensus 99 -g--~~~~~~~~~a~~~-~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~--~------ 166 (300)
T TIGR01037 99 -G--SSVEEFAEVAEKL-EKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLS--P------ 166 (300)
T ss_pred -c--CCHHHHHHHHHHH-HhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECC--C------
Confidence 2 3688887766655 455 38998884321 3345677777764 788864321 1
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec----C------------------C--C------HHHHHHHHhhcCC
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE----C------------------V--P------PPVAAAATSALQI 275 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE----~------------------V--p------~ela~~It~~l~I 275 (384)
+. ++.++-++.++++|+++|.+- + + | -+.+++|.+.+++
T Consensus 167 --------~~---~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i 235 (300)
T TIGR01037 167 --------NV---TDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI 235 (300)
T ss_pred --------Ch---hhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC
Confidence 11 356778889999999999872 1 1 1 1567888899999
Q ss_pred CEEEEc
Q 016682 276 PTIGIG 281 (384)
Q Consensus 276 PtIGIG 281 (384)
|+|+-|
T Consensus 236 pvi~~G 241 (300)
T TIGR01037 236 PIIGVG 241 (300)
T ss_pred CEEEEC
Confidence 988755
No 40
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.01 E-value=0.014 Score=56.12 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=76.7
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCC-cCCCHHHHHHHHHHHHcccCC---CcEEE--eCCCCCCcCCHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKR---PLLVG--DLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT-~~VtldeMl~h~raV~Rga~~---~~vva--DmPfgsY~~s~e~av~nA~r 178 (384)
++.+.++|++.|.+-|...---.|+-.. ..++.+|++...++++...+. -+|++ |--..+ ..+.+++++-+..
T Consensus 90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~-~~~~~eai~Ra~a 168 (243)
T cd00377 90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAG-EEGLDEAIERAKA 168 (243)
T ss_pred HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhcc-CCCHHHHHHHHHH
Confidence 4566679999999988875444444332 477999999999999988765 34444 443222 1368899999877
Q ss_pred HHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeee
Q 016682 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 179 l~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gH 214 (384)
.. ++|||+|.+++- . ..+.+++++++ .+||+-.
T Consensus 169 y~-~AGAD~v~v~~~-~-~~~~~~~~~~~~~~Pl~~~ 202 (243)
T cd00377 169 YA-EAGADGIFVEGL-K-DPEEIRAFAEAPDVPLNVN 202 (243)
T ss_pred HH-HcCCCEEEeCCC-C-CHHHHHHHHhcCCCCEEEE
Confidence 66 799999999985 3 45777788765 6788754
No 41
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=97.01 E-value=0.02 Score=57.01 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCc-CCCHHHHHHHHHHHHcccCC-CcEE---EeCCCCCCcCCHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~-~VtldeMl~h~raV~Rga~~-~~vv---aDmPfgsY~~s~e~av~nA~r 178 (384)
+.+-++++|+-.|.+-|...--.-|+-++. .++.+||+...++++.+... .|++ .|-- ..+ ..+++++-+..
T Consensus 97 ~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~-~~~--g~deaI~Ra~a 173 (294)
T TIGR02319 97 ATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDAR-ESF--GLDEAIRRSRE 173 (294)
T ss_pred HHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEeccc-ccC--CHHHHHHHHHH
Confidence 457788999999999999765556665554 57999999999999887654 3554 5652 333 68899998877
Q ss_pred HHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 179 ILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 179 l~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
.. ++|||+|.+||- ...+.|+++++. ..|++.++-.. |++.. -..+.|++.|...+.
T Consensus 174 Y~-eAGAD~ifi~~~--~~~~ei~~~~~~~~~P~~~nv~~~-------------~~~p~------~s~~eL~~lG~~~v~ 231 (294)
T TIGR02319 174 YV-AAGADCIFLEAM--LDVEEMKRVRDEIDAPLLANMVEG-------------GKTPW------LTTKELESIGYNLAI 231 (294)
T ss_pred HH-HhCCCEEEecCC--CCHHHHHHHHHhcCCCeeEEEEec-------------CCCCC------CCHHHHHHcCCcEEE
Confidence 66 799999999984 245557777764 44765432111 12110 025668888988888
Q ss_pred ecCCC
Q 016682 258 LECVP 262 (384)
Q Consensus 258 lE~Vp 262 (384)
..+-.
T Consensus 232 ~~~~~ 236 (294)
T TIGR02319 232 YPLSG 236 (294)
T ss_pred EcHHH
Confidence 77553
No 42
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.98 E-value=0.017 Score=54.43 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
..|+.+.+.|+|.+.+=|--++ .-|+. +.....+.+++..+.|+++ + |+. .|.+++ .+++ +
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~-~~~~~--------~~~~~i~~i~~~~~~~l~v-~---GGi-~~~~~~----~~~~-~ 96 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGA-FEGER--------KNAEAIEKIIEAVGVPVQL-G---GGI-RSAEDA----ASLL-D 96 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhh-hcCCc--------ccHHHHHHHHHHcCCcEEE-c---CCc-CCHHHH----HHHH-H
Confidence 3567777899999966553321 11222 2244556677777777555 3 566 467766 4566 6
Q ss_pred hCCCEEEeCCCccchHHHHHHHHHc-CC-ceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVEA-GI-AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~a-GI-PV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~ 260 (384)
+||+.|.+-.......+.++.+++. |- .++ +++.- .-+...+.|.........++.++.++++||+.|++-.
T Consensus 97 ~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~--~sid~----~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~ 170 (241)
T PRK13585 97 LGVDRVILGTAAVENPEIVRELSEEFGSERVM--VSLDA----KDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN 170 (241)
T ss_pred cCCCEEEEChHHhhChHHHHHHHHHhCCCcEE--EEEEe----eCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 9999999943211122455555554 21 111 11111 1112223444332223567888999999999998743
Q ss_pred C---------CHHHHHHHHhhcCCCEEEEcC
Q 016682 261 V---------PPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 261 V---------p~ela~~It~~l~IPtIGIGA 282 (384)
+ .-++.+++++.+++|++..|.
T Consensus 171 ~~~~g~~~g~~~~~i~~i~~~~~iPvia~GG 201 (241)
T PRK13585 171 VDVEGLLEGVNTEPVKELVDSVDIPVIASGG 201 (241)
T ss_pred ecCCCCcCCCCHHHHHHHHHhCCCCEEEeCC
Confidence 3 248899999999999997763
No 43
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.98 E-value=0.03 Score=55.22 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=85.8
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhh---------ccCCCCcCCCHHHHHHHHHHHHccc
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV---------HGHDTTLPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~---------lG~~dT~~VtldeMl~h~raV~Rga 151 (384)
++.|+++.++|+||+-..+=.-.||+.+|+.|+|+|++-.|.=--+ |-|.|...+.+ +..+-|.-.+
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~----em~~eiLp~v 79 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVM----EMAREILPVV 79 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHH----HHHHHHGGG-
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHH----HHHHhhhhhc
Confidence 4678898899999999999999999999999999999865543333 44444444444 3335555555
Q ss_pred CCCcEEEeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC------CC------------ccchHHHHHHHHHcCCcee
Q 016682 152 KRPLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLE------GG------------SPSRITAARGIVEAGIAVM 212 (384)
Q Consensus 152 ~~~~vvaDm-PfgsY~~s~e~av~nA~rl~keaGAdaVKLE------gg------------~~e~~~~I~alv~aGIPV~ 212 (384)
+..+|++-+ ...-| .+.++-++ -+|+.|..+|.== || .+.-++.|+...+.|+--+
T Consensus 80 ~~tPViaGv~atDP~-~~~~~fl~----~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~ 154 (268)
T PF09370_consen 80 KDTPVIAGVCATDPF-RDMDRFLD----ELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTT 154 (268)
T ss_dssp SSS-EEEEE-TT-TT---HHHHHH----HHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE-
T ss_pred cCCCEEEEecCcCCC-CcHHHHHH----HHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeee
Confidence 544466443 22223 35555544 4568899988521 11 1223567777777776544
Q ss_pred eeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 213 gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
+ |.. + .++|+++.+||||+|++=
T Consensus 155 ~--------------yvf---~-------~e~A~~M~~AGaDiiv~H 177 (268)
T PF09370_consen 155 A--------------YVF---N-------EEQARAMAEAGADIIVAH 177 (268)
T ss_dssp ---------------EE----S-------HHHHHHHHHHT-SEEEEE
T ss_pred e--------------eec---C-------HHHHHHHHHcCCCEEEec
Confidence 2 211 2 246788889999999864
No 44
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.93 E-value=0.036 Score=54.54 Aligned_cols=133 Identities=25% Similarity=0.290 Sum_probs=85.0
Q ss_pred hhccCCCCcCCC---HHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------
Q 016682 125 VVHGHDTTLPIT---LEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------ 194 (384)
Q Consensus 125 v~lG~~dT~~Vt---ldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------ 194 (384)
...|+..++.++ ++..+.+.+...+..+ .| +++-+ +|+| ++++-++.|.++ ++.|+|+|-|-=+.
T Consensus 68 n~~g~~n~e~~s~~~~~~~~~~~~~~~~~~~~~p-~i~si-~G~~--~~~~~~~~a~~~-~~~gad~ielN~sCP~~~~~ 142 (299)
T cd02940 68 GQIGFNNIELISEKPLEYWLKEIRELKKDFPDKI-LIASI-MCEY--NKEDWTELAKLV-EEAGADALELNFSCPHGMPE 142 (299)
T ss_pred hcccccCCccccccCHHHHHHHHHHHHhhCCCCe-EEEEe-cCCC--CHHHHHHHHHHH-HhcCCCEEEEECCCCCCCCC
Confidence 456676665444 6666666666655553 45 55554 3444 788888877665 46899998773110
Q ss_pred -----------cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec---
Q 016682 195 -----------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--- 259 (384)
Q Consensus 195 -----------~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--- 259 (384)
+...+.++++++ ..+||.-=| .| + ...+.+.+++++++||++|++=
T Consensus 143 ~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl--~~--------------~---~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (299)
T cd02940 143 RGMGAAVGQDPELVEEICRWVREAVKIPVIAKL--TP--------------N---ITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred CCCchhhccCHHHHHHHHHHHHHhcCCCeEEEC--CC--------------C---chhHHHHHHHHHHcCCCEEEEeccc
Confidence 234555666654 368887431 12 1 1246778888999999999831
Q ss_pred ---------C---------------C------C--HHHHHHHHhhc--CCCEEEEc
Q 016682 260 ---------C---------------V------P--PPVAAAATSAL--QIPTIGIG 281 (384)
Q Consensus 260 ---------~---------------V------p--~ela~~It~~l--~IPtIGIG 281 (384)
. . | -+.+.++.+++ ++|+||-|
T Consensus 204 ~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G 259 (299)
T cd02940 204 NSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG 259 (299)
T ss_pred ccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC
Confidence 0 0 1 36788899999 89998755
No 45
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.89 E-value=0.048 Score=54.23 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCC-C--CcCCCHHHHHHHHHHHHcccCC-CcEE---EeCCCCCCcCCHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHD-T--TLPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDT 175 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~-d--T~~VtldeMl~h~raV~Rga~~-~~vv---aDmPfgsY~~s~e~av~n 175 (384)
-+.+-++++|+-.|.+-|...--..|+- + -..++.+||+...++++.+... .|++ .|.-+.+. ..+++++-
T Consensus 94 ~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~--g~deAI~R 171 (290)
T TIGR02321 94 YVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL--GQQEAVRR 171 (290)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC--CHHHHHHH
Confidence 3467788999999999997654445553 2 2358999999999998876432 3555 46543333 56899998
Q ss_pred HHHHHHHhCCCEEEeCCCccchHHHHHHHHH---cCCceee
Q 016682 176 AVRILKEGGMDAIKLEGGSPSRITAARGIVE---AGIAVMG 213 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~~e~~~~I~alv~---aGIPV~g 213 (384)
+.... ++|||+|.+|++ ....+.|+++++ .-+||+.
T Consensus 172 a~aY~-eAGAD~ifv~~~-~~~~~ei~~~~~~~~~p~pv~~ 210 (290)
T TIGR02321 172 GQAYE-EAGADAILIHSR-QKTPDEILAFVKSWPGKVPLVL 210 (290)
T ss_pred HHHHH-HcCCCEEEecCC-CCCHHHHHHHHHhcCCCCCeEE
Confidence 86655 799999999975 233555666665 2367763
No 46
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.88 E-value=0.017 Score=57.24 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=70.7
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCC----CcCCCHHHHHHHHHHHHccc-CCC-cEEEeCC--CCCCcCCHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDT----TLPITLEEMLVHCRAVARGA-KRP-LLVGDLP--FGTYESSTNQAVDTA 176 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~d----T~~VtldeMl~h~raV~Rga-~~~-~vvaDmP--fgsY~~s~e~av~nA 176 (384)
.+.++++|+..|.+-|...--.-|+-. ...++.+||+...++++.+. +.. +|++=+. ..+ .+.+++++-+
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~--~~~~eAi~Ra 175 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILG--KGMEDALKRA 175 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEeccccccc--CCHHHHHHHH
Confidence 566788999999999987544433322 24689999999999998762 333 4445543 223 2588999998
Q ss_pred HHHHHHhCCCEEEeCCCccchHHHHHHHHH---c---CCceeee
Q 016682 177 VRILKEGGMDAIKLEGGSPSRITAARGIVE---A---GIAVMGH 214 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~~e~~~~I~alv~---a---GIPV~gH 214 (384)
.+.. ++|||+|.++++ ....+.|+.+++ . .+|++..
T Consensus 176 ~ay~-eAGAD~ifv~~~-~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 176 EAYA-EAGADGIMIHSR-KKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HHHH-HcCCCEEEecCC-CCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 6655 899999999974 222333444443 2 4688743
No 47
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.85 E-value=0.015 Score=57.49 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=92.8
Q ss_pred EEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHH
Q 016682 96 MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDT 175 (384)
Q Consensus 96 mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~n 175 (384)
|...-|.+.-+++.+.|.|++.+-- +....+-+.+. ....++ ........+++-+- + .++++..+.
T Consensus 15 m~~~t~~~fR~l~~~~g~~~~~tem-i~~~~l~~~~~---~~~~~~------~~~~~~~p~i~ql~--g--~~~~~~~~a 80 (319)
T TIGR00737 15 MAGVTDSPFRRLVAEYGAGLTVCEM-VSSEAIVYDSQ---RTMRLL------DIAEDETPISVQLF--G--SDPDTMAEA 80 (319)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEECC-EEEhhhhcCCH---HHHHHh------hcCCccceEEEEEe--C--CCHHHHHHH
Confidence 5577888888888999988776431 11111112110 011111 11222233666663 3 378888877
Q ss_pred HHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHH
Q 016682 176 AVRILKEGGMDAIKLEGGS------------------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~ 236 (384)
|.++ +++|+|+|.|-.|. +-..+.++++++ .++||..-+. .|+. .+
T Consensus 81 a~~~-~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir---------~g~~---~~-- 145 (319)
T TIGR00737 81 AKIN-EELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR---------IGWD---DA-- 145 (319)
T ss_pred HHHH-HhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE---------cccC---CC--
Confidence 7665 57999999996441 122355556554 3678754321 1221 01
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCC----------CHHHHHHHHhhcCCCEEEEc
Q 016682 237 SAVKVVETALALQEVGCFSVVLECV----------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 237 ~a~~ll~rAkAleeAGAf~IvlE~V----------p~ela~~It~~l~IPtIGIG 281 (384)
..++++-++.++++|++.|.+-+. .-+.++.|.+.+++|+|+-|
T Consensus 146 -~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 199 (319)
T TIGR00737 146 -HINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNG 199 (319)
T ss_pred -cchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeC
Confidence 124567889999999999987532 24677899999999998654
No 48
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.84 E-value=0.024 Score=53.67 Aligned_cols=155 Identities=23% Similarity=0.289 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
.-|+.++++|+|.|.+=|--+. |+. .+.. +.-++.+++.++.| |+++ |+. .|.+++ .+++ +
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~---~~~--~~~~----~~~i~~i~~~~~~p-v~~~---GGI-~s~~d~----~~~l-~ 91 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITAS---SEG--RETM----LDVVERVAEEVFIP-LTVG---GGI-RSLEDA----RRLL-R 91 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcc---ccc--Cccc----HHHHHHHHHhCCCC-EEEe---CCC-CCHHHH----HHHH-H
Confidence 4678889999998865543321 111 1222 34456677777777 5555 666 467776 4566 4
Q ss_pred hCCCEEEeCCCccchHHHHHHHHHc----CCceeeeccCCcccccccCCccc--cCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVEA----GIAVMGHVGLTPQAISVLGGFRP--QGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~a----GIPV~gHiGLtPQ~~~~lgGfrv--qGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
.|+++|-+--+..+-.+.++.+.+. .|.+. |.-..- ...++++ .|-.++...+.++.++.++++|++.|
T Consensus 92 ~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~----ld~k~~-~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 92 AGADKVSINSAAVENPELIREIAKRFGSQCVVVS----IDAKRR-GDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred cCCceEEECchhhhChHHHHHHHHHcCCCCEEEE----EEeeec-CCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 7999998743321222444444442 22221 111000 0001111 22222233456788899999999988
Q ss_pred EecCCC---------HHHHHHHHhhcCCCEEEEc
Q 016682 257 VLECVP---------PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 257 vlE~Vp---------~ela~~It~~l~IPtIGIG 281 (384)
.+-.+. -++++++.+.+++|+|.-|
T Consensus 167 ~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 167 LLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred EEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeC
Confidence 884443 4889999999999988665
No 49
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.82 E-value=0.043 Score=51.51 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.|+..++.|+|-|.+-|--+. |. .....+ ...+.+++.++.|+.+ + |+. .+.+++ .+++ +.
T Consensus 35 ~a~~~~~~g~~~i~i~dl~~~---~~--~~~~n~----~~~~~i~~~~~~pv~~-~---ggi-~~~~d~----~~~~-~~ 95 (232)
T TIGR03572 35 AARIYNAKGADELIVLDIDAS---KR--GREPLF----ELISNLAEECFMPLTV-G---GGI-RSLEDA----KKLL-SL 95 (232)
T ss_pred HHHHHHHcCCCEEEEEeCCCc---cc--CCCCCH----HHHHHHHHhCCCCEEE-E---CCC-CCHHHH----HHHH-Hc
Confidence 477788999998877664321 11 112332 3345566667778544 3 444 356665 3455 57
Q ss_pred CCCEEEeCCCccchHHHHHHHHHc-CCc-eeeeccCCcccccccCC-ccc--cCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 184 GMDAIKLEGGSPSRITAARGIVEA-GIA-VMGHVGLTPQAISVLGG-FRP--QGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 184 GAdaVKLEgg~~e~~~~I~alv~a-GIP-V~gHiGLtPQ~~~~lgG-frv--qGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
|++.|-+--...+..+.++.+.+. |-. ++..+-+-..- .++ +++ .|-++......++-++.++++|++.|++
T Consensus 96 G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 96 GADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKEL---DGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred CCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCC---CCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 999998833222334566666653 222 23222211110 001 111 1222222334678889999999999998
Q ss_pred cCCC---------HHHHHHHHhhcCCCEEEEcCC
Q 016682 259 ECVP---------PPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 259 E~Vp---------~ela~~It~~l~IPtIGIGAG 283 (384)
-.+. -++++++.+.+++|++..|.=
T Consensus 173 ~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi 206 (232)
T TIGR03572 173 NSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGA 206 (232)
T ss_pred eCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCC
Confidence 8863 389999999999999977744
No 50
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=96.80 E-value=0.034 Score=53.71 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
.+|...|+++... .+..-+++...+.+|+|.-|=+.|.+..|. +++... +..+.+
T Consensus 46 ~vt~e~L~~m~~~---------l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~--------~~~~~~---i~~~~~----- 100 (239)
T TIGR02990 46 PTTPENLRKMQPR---------LTEAAALILPDEELDVVAYSCTSASVVIGD--------DEVTRA---INAAKP----- 100 (239)
T ss_pred CCCHHHHHHHhhh---------HHHHHHHhcCCCCCCEEEEccchhheecCH--------HHHHHH---HHhcCC-----
Confidence 5788889888531 122224455668999998777777777772 333333 332221
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-cchH-HHHHHHHHcCCceeeeccCCcccccccCCccccCCCH
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PSRI-TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-~e~~-~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~ 235 (384)
..|- .++..|+..|.+- -|+.=|-|---. ++.. ...+.+.++||.|..+.||.-.. ++. +++.+
T Consensus 101 -g~p~----tt~~~A~~~AL~a---lg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~-----~~~-ia~i~ 166 (239)
T TIGR02990 101 -GTPV----VTPSSAAVDGLAA---LGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTD-----DRE-MARIS 166 (239)
T ss_pred -CCCe----eCHHHHHHHHHHH---cCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCC-----Cce-eeecC
Confidence 1122 4677787766554 478777664321 2222 33445667999998765543321 222 44532
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhh--hcCC
Q 016682 236 TSAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDL--LGMM 300 (384)
Q Consensus 236 ~~a~~ll~rAkAleeAGAf~IvlE~Vp---~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~Dl--LG~~ 300 (384)
-+.+++-++++...+||+||+-|.- .+++.++-+++++|++ ++-|+++||=| +|..
T Consensus 167 --p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVl-------sSNqat~W~~Lr~~G~~ 227 (239)
T TIGR02990 167 --PDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVV-------TSNQATAWRCLRLCGDP 227 (239)
T ss_pred --HHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEE-------EHHHHHHHHHHHHcCCC
Confidence 2355666677778999999999983 7999999999999999 68899999854 4543
No 51
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.79 E-value=0.21 Score=49.71 Aligned_cols=186 Identities=17% Similarity=0.197 Sum_probs=115.7
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc--
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-- 151 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-- 151 (384)
++..++ ...++++--+-..|+|+..+++ .+|+.+.++|+--.....-.+| .++.+...++.+++..
T Consensus 4 v~~~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~-------~~~~~~~~~~~~a~~~~~ 76 (293)
T PRK07315 4 VSAEKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMG-------GYKVCKNLIENLVESMGI 76 (293)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC-------cHHHHHHHHHHHHHHcCC
Confidence 455554 4456677789999999999995 4677799999833222222222 1445566666666655
Q ss_pred CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccc
Q 016682 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 152 ~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~ 224 (384)
+.| |+.-+.-|++ + .+ .+.+ ++|.+.|.+-+.. +|..+..+.++ ..|++|-+=+|-.....
T Consensus 77 ~vP-V~lHLDH~~~----~-~i---~~ai-~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~e-- 144 (293)
T PRK07315 77 TVP-VAIHLDHGHY----E-DA---LECI-EVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEE-- 144 (293)
T ss_pred CCc-EEEECCCCCH----H-HH---HHHH-HcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcC--
Confidence 446 7777776543 2 22 3566 5899999997763 34444444444 47999988888332110
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--C-----------CCHHHHHHHHhhc-CCCEEEEcCCCCCCch
Q 016682 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--C-----------VPPPVAAAATSAL-QIPTIGIGAGPFCSGQ 289 (384)
Q Consensus 225 lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~-----------Vp~ela~~It~~l-~IPtIGIGAG~~cDGQ 289 (384)
+ .+.|.+. ..-.++|+.+.+.|+|.|=+= . +.-+..++|.+.+ ++|+..+|+..-+|-+
T Consensus 145 --d-~~~g~s~---~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~ 217 (293)
T PRK07315 145 --D-GIIGKGE---LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQ 217 (293)
T ss_pred --c-cccCccC---CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHH
Confidence 1 1233321 012344555567899988654 2 2368899999999 5999999875444433
No 52
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.73 E-value=0.73 Score=45.93 Aligned_cols=220 Identities=10% Similarity=0.080 Sum_probs=129.2
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~- 152 (384)
++..++ ...++++--+-..++||..+++ .+|+.+.++|+--........| .++.+...++..++.++
T Consensus 4 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~ 76 (286)
T PRK08610 4 VSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMS-------GFYTVVKMVEGLMHDLNI 76 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC-------cHHHHHHHHHHHHHHcCC
Confidence 445554 4456677789999999999995 4677899999833222111111 24556666777766665
Q ss_pred -CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchH----HHHHHHHHcCCceeeeccCCcccccc
Q 016682 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRI----TAARGIVEAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 153 -~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~----~~I~alv~aGIPV~gHiGLtPQ~~~~ 224 (384)
.| |+.-+.-| . +.+.. .+.+ ++|...|.+-|.. +|-. +.++.....|++|=|=||-.+....-
T Consensus 77 ~vP-V~lHLDHg-~--~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~ 147 (286)
T PRK08610 77 TIP-VAIHLDHG-S--SFEKC----KEAI-DAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDD 147 (286)
T ss_pred CCC-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 45 77777753 2 44444 4567 5899999997763 3333 34444446899998777765522110
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchhh
Q 016682 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQVL 291 (384)
Q Consensus 225 lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQvL 291 (384)
..+-...=-+.+++.+.+ ++-|+|+|=+= -+.-++.++|.+.+++|+. +-.|++. |-|+.
T Consensus 148 ~~~~~~~yT~peea~~Fv------~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLV-LHGgSG~~~e~~~ 220 (286)
T PRK08610 148 VVADGIIYADPKECQELV------EKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLV-LHGGTGIPTKDIQ 220 (286)
T ss_pred CCCcccccCCHHHHHHHH------HHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEE-EeCCCCCCHHHHH
Confidence 000001112445555554 35699977542 2457889999999999974 5444443 33322
Q ss_pred hHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 292 VYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 292 V~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
-.=-+|.. | +.-+-++.....+++++|.++
T Consensus 221 -~ai~~GI~----------K-iNi~T~l~~a~~~~~~~~~~~ 250 (286)
T PRK08610 221 -KAIPFGTA----------K-INVNTENQIASAKAVRDVLNN 250 (286)
T ss_pred -HHHHCCCe----------E-EEeccHHHHHHHHHHHHHHHh
Confidence 11113443 1 233455566666777776654
No 53
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.73 E-value=0.032 Score=53.82 Aligned_cols=117 Identities=24% Similarity=0.255 Sum_probs=96.1
Q ss_pred EEEecCChHHHHHHHHcCCCEEEec--chhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHH
Q 016682 95 TMVTAYDYPSAVHLDSAGIDICLVG--DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (384)
Q Consensus 95 ~mlTAyD~~sA~iae~AGiD~IlVG--DSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~a 172 (384)
+|+.+-|...=--+-+||.|+|=+| ||+ |+.+...+.+|.+.-++..|.-.|+.++.+-.|+ . ...++=
T Consensus 64 ICVSaVep~~f~~aV~AGAdliEIGNfDsF------Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPH-i--L~ld~Q 134 (242)
T PF04481_consen 64 ICVSAVEPELFVAAVKAGADLIEIGNFDSF------YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPH-I--LPLDQQ 134 (242)
T ss_pred eEeecCCHHHHHHHHHhCCCEEEecchHHH------HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCc-c--ccHHHH
Confidence 7888999888888889999999998 566 7778889999999999999999999999999997 3 578888
Q ss_pred HHHHHHHHHHhCCCEEEeCCCc-------------cchHHHHHHHH----HcCCceeeeccCCccc
Q 016682 173 VDTAVRILKEGGMDAIKLEGGS-------------PSRITAARGIV----EAGIAVMGHVGLTPQA 221 (384)
Q Consensus 173 v~nA~rl~keaGAdaVKLEgg~-------------~e~~~~I~alv----~aGIPV~gHiGLtPQ~ 221 (384)
++-|.+|. +.|+|.|+-|||+ +..++++.+.- .-.|||+.-=||+.=+
T Consensus 135 v~LA~~L~-~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT 199 (242)
T PF04481_consen 135 VQLAEDLV-KAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVT 199 (242)
T ss_pred HHHHHHHH-HhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhh
Confidence 88999988 5899999999994 33344444333 2589999988887643
No 54
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=96.70 E-value=0.03 Score=53.89 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=69.8
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC--c---cchHHHHHHHHH----cCCceeeeccCCcccccccCCcc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG--S---PSRITAARGIVE----AGIAVMGHVGLTPQAISVLGGFR 229 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg--~---~e~~~~I~alv~----aGIPV~gHiGLtPQ~~~~lgGfr 229 (384)
+.|+| ...+...-+..+.+.+ +.||++|++... . .+..+.++.+.+ .|+|++.++- +. |...
T Consensus 80 ~~~~g-~~~~~~~~~~~v~~al-~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~-----Gvh~ 150 (258)
T TIGR01949 80 STSLS-PDPNDKRIVTTVEDAI-RMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMY--PR-----GPHI 150 (258)
T ss_pred CCCCC-CCCCcceeeeeHHHHH-HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc-----Cccc
Confidence 66764 2122212334455667 689999999652 1 244455555553 6999987432 21 1111
Q ss_pred ccCCCHHHHHHHHHH-HHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEEcCCCC
Q 016682 230 PQGKNVTSAVKVVET-ALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 230 vqGrt~~~a~~ll~r-AkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGIGAG~~ 285 (384)
-+ .+. +.+++ ++..+++|||.|.+.... .+..+.+++..++|+..|| |..
T Consensus 151 ~~-~~~----~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~iPVva~G-Gi~ 202 (258)
T TIGR01949 151 DD-RDP----ELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKGCPAPVVVAG-GPK 202 (258)
T ss_pred cc-ccH----HHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHhCCCcEEEec-CCC
Confidence 11 222 33445 688889999999998653 6888999999999998875 444
No 55
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.67 E-value=0.11 Score=51.47 Aligned_cols=163 Identities=18% Similarity=0.282 Sum_probs=93.2
Q ss_pred hhhCCCcE-EEEecCCh----HHHHHHHHcCCCEE-E-ecchhhhhh-ccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 87 KHKNGEPI-TMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 87 ~k~~g~~I-~mlTAyD~----~sA~iae~AGiD~I-l-VGDSl~mv~-lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
.+..+.|+ +-+...|. ..|+.++++|+|.| + .|.....+. -|.-+...=..+-+..-+++|++.++.| |.+
T Consensus 58 ~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~p-v~v 136 (319)
T TIGR00737 58 IAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIP-VTV 136 (319)
T ss_pred cCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCC-EEE
Confidence 33444555 66777776 45677788999999 5 453321111 1111112224567778888888888777 444
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------cchHHHHHHHHH-cCCceeeeccCCcccccccCCccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRP 230 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrv 230 (384)
-+.- ++..+..+.++.+.+ ++++|+++|-+-+.. ....+.++.+.+ .+|||++. ||.
T Consensus 137 Kir~-g~~~~~~~~~~~a~~-l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~n-----------GgI-- 201 (319)
T TIGR00737 137 KIRI-GWDDAHINAVEAARI-AEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGN-----------GDI-- 201 (319)
T ss_pred EEEc-ccCCCcchHHHHHHH-HHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEe-----------CCC--
Confidence 4432 332223344454544 457999999886521 224566777776 47999863 443
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhhc
Q 016682 231 QGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSAL 273 (384)
Q Consensus 231 qGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~l 273 (384)
.|.+++.+++ ++.|||+|.+= .+ .+.+...+.+.+
T Consensus 202 --~~~~da~~~l------~~~gad~VmigR~~l~~P~l~~~~~~~~ 239 (319)
T TIGR00737 202 --FSPEDAKAML------ETTGCDGVMIGRGALGNPWLFRQIEQYL 239 (319)
T ss_pred --CCHHHHHHHH------HhhCCCEEEEChhhhhCChHHHHHHHHH
Confidence 3444444443 34699998873 12 345555555443
No 56
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.64 E-value=0.089 Score=52.57 Aligned_cols=134 Identities=20% Similarity=0.186 Sum_probs=87.0
Q ss_pred hccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC-----C------Cc
Q 016682 126 VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE-----G------GS 194 (384)
Q Consensus 126 ~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE-----g------g~ 194 (384)
..|+++ ..+|+++.+.+.+++..+.| |++.+ + ++ ++++..+.+.++ +++|+|+|-|- . +.
T Consensus 78 ~~gl~n---~g~d~~~~~i~~~~~~~~~p-vi~sI-~-g~--~~~e~~~~a~~~-~~agad~ielN~scpp~~~~~~g~~ 148 (334)
T PRK07565 78 EPAKFY---VGPEEYLELIRRAKEAVDIP-VIASL-N-GS--SAGGWVDYARQI-EQAGADALELNIYYLPTDPDISGAE 148 (334)
T ss_pred hhhccC---cCHHHHHHHHHHHHHhcCCc-EEEEe-c-cC--CHHHHHHHHHHH-HHcCCCEEEEeCCCCCCCCCCcccc
Confidence 345543 56899999888887766555 77777 2 33 677777766665 57899999882 1 10
Q ss_pred --cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC-CC--------
Q 016682 195 --PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-VP-------- 262 (384)
Q Consensus 195 --~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~-Vp-------- 262 (384)
....+.++++.++ .+||+.-++ | ++ ..+.+-+++++++||++|.+=. ++
T Consensus 149 ~~~~~~eil~~v~~~~~iPV~vKl~--p-------~~----------~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~ 209 (334)
T PRK07565 149 VEQRYLDILRAVKSAVSIPVAVKLS--P-------YF----------SNLANMAKRLDAAGADGLVLFNRFYQPDIDLET 209 (334)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEeC--C-------Cc----------hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence 1245667777764 799986532 2 11 1355678899999999997632 11
Q ss_pred ------------------HHHHHHHHhhcCCCEEEEcCCCCCCch
Q 016682 263 ------------------PPVAAAATSALQIPTIGIGAGPFCSGQ 289 (384)
Q Consensus 263 ------------------~ela~~It~~l~IPtIGIGAG~~cDGQ 289 (384)
-+.+..+.+.+++|+||. |.-.+|+
T Consensus 210 ~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~--GGI~s~~ 252 (334)
T PRK07565 210 LEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT--TGVHDAE 252 (334)
T ss_pred cccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE--CCCCCHH
Confidence 144566778889998865 4444554
No 57
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.64 E-value=0.045 Score=52.57 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=95.6
Q ss_pred Ch-HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 101 DY-PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 101 D~-~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
|. ..|+..++.|+|.|.+=|--+.- ..... -+...+.+++.++.| |.++ |+. .|.+++ .++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~-----~~~~~----n~~~i~~i~~~~~~p-v~~~---GGi-~s~~d~----~~~ 92 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS-----EGRTT----MIDVVERTAETVFIP-LTVG---GGI-KSIEDV----DKL 92 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc-----ccChh----hHHHHHHHHHhcCCC-EEEE---CCC-CCHHHH----HHH
Confidence 55 67888899999999887765441 11122 244556677777666 5555 666 477777 467
Q ss_pred HHHhCCCEEEeCCC-ccchHHHHHHHHHc-C-CceeeeccCCcccccccCCcc--ccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 180 LKEGGMDAIKLEGG-SPSRITAARGIVEA-G-IAVMGHVGLTPQAISVLGGFR--PQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 180 ~keaGAdaVKLEgg-~~e~~~~I~alv~a-G-IPV~gHiGLtPQ~~~~lgGfr--vqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
+ +.||+.|-+ |- .-+-.+.++.+.+. | =.++-.+-+..-.....+.|+ +.|=..+...+.++-++.++++|++
T Consensus 93 ~-~~Ga~~viv-gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~ 170 (254)
T TIGR00735 93 L-RAGADKVSI-NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG 170 (254)
T ss_pred H-HcCCCEEEE-ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence 7 589999987 32 11223445555442 2 123322211110000000111 2222222345678889999999999
Q ss_pred EEEecCCC---------HHHHHHHHhhcCCCEEEEc
Q 016682 255 SVVLECVP---------PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 255 ~IvlE~Vp---------~ela~~It~~l~IPtIGIG 281 (384)
.|.+-.+. -++++++.+.+++|+|.-|
T Consensus 171 ~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 171 EILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred EEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 99984443 4899999999999988654
No 58
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.57 E-value=0.046 Score=51.00 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=89.5
Q ss_pred ChH-HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 101 DYP-SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 101 D~~-sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
|.. .|+..++.|+|.+.+-|-=+ ...|. ... +...+.|++.++.| |.++ |+. .|.+++ .++
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~-~~~g~----~~~----~~~i~~i~~~~~~p-v~~~---GGI-~~~ed~----~~~ 92 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDG-AKAGK----PVN----LELIEAIVKAVDIP-VQVG---GGI-RSLETV----EAL 92 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCc-cccCC----ccc----HHHHHHHHHHCCCC-EEEc---CCc-CCHHHH----HHH
Confidence 444 37888899999998766411 11232 222 44456666777777 4443 566 577777 355
Q ss_pred HHHhCCCEEEeCCCccchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGSPSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
+ +.||+.|-+--..-+..+.++.+.+. .|.|. +... .+-+.+.|-........++.++.+++.||+.|
T Consensus 93 ~-~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vs----id~k----~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~i 163 (233)
T PRK00748 93 L-DAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVG----LDAR----DGKVATDGWLETSGVTAEDLAKRFEDAGVKAI 163 (233)
T ss_pred H-HcCCCEEEECchHHhCHHHHHHHHHHhCCCceee----eecc----CCEEEEccCeecCCCCHHHHHHHHHhcCCCEE
Confidence 5 68999997732211222345555543 33321 2221 01111222211112355778899999999976
Q ss_pred EecCC---------CHHHHHHHHhhcCCCEEEEc
Q 016682 257 VLECV---------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 257 vlE~V---------p~ela~~It~~l~IPtIGIG 281 (384)
++=.+ .-++.+++++.+++|+|.-|
T Consensus 164 i~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~G 197 (233)
T PRK00748 164 IYTDISRDGTLSGPNVEATRELAAAVPIPVIASG 197 (233)
T ss_pred EEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeC
Confidence 65544 25889999999999988643
No 59
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.57 E-value=0.047 Score=51.80 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=93.3
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.|+.+.++|.|+|++|-|. .+|.+.|..-++++++..+.|.++ .|. +. ++. . -
T Consensus 16 ia~~v~~~gtDaI~VGGS~-----------gvt~~~~~~~v~~ik~~~~lPvil--fp~-~~----~~i-------~--~ 68 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGSL-----------GIVESNLDQTVKKIKKITNLPVIL--FPG-NV----NGL-------S--R 68 (205)
T ss_pred HHHHHHhcCCCEEEEcCcC-----------CCCHHHHHHHHHHHHhhcCCCEEE--ECC-Cc----ccc-------C--c
Confidence 3567889999999999553 468899998899999888889666 463 32 222 1 3
Q ss_pred CCCEEEeCC----C-ccchHH-HHHHH---HHcCCce--eeeccCCccc-ccccCCccccCCCH--HHHHHHHHHHHHHH
Q 016682 184 GMDAIKLEG----G-SPSRIT-AARGI---VEAGIAV--MGHVGLTPQA-ISVLGGFRPQGKNV--TSAVKVVETALALQ 249 (384)
Q Consensus 184 GAdaVKLEg----g-~~e~~~-~I~al---v~aGIPV--~gHiGLtPQ~-~~~lgGfrvqGrt~--~~a~~ll~rAkAle 249 (384)
+||++-+=- . ..+... .++++ .+.|..+ +|=|=++|.. +.+.+ +.++. ..-+++..-|.+-+
T Consensus 69 ~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~----~a~~ip~~~~e~~~~~a~aa~ 144 (205)
T TIGR01769 69 YADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVG----KAREIPYNKPEIAAAYCLAAK 144 (205)
T ss_pred CCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeec----CcccCCCCCHHHHHHHHHHHH
Confidence 578876531 1 022111 12222 3334322 2333344432 11222 22322 34467777888888
Q ss_pred HcCCcEEEecC-------CCHHHHHHHHhhcCCCEEEEcCCC
Q 016682 250 EVGCFSVVLEC-------VPPPVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 250 eAGAf~IvlE~-------Vp~ela~~It~~l~IPtIGIGAG~ 284 (384)
..|+..|+||. ++.++.++|.+.+++|++ +|.|=
T Consensus 145 ~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~-vGGGI 185 (205)
T TIGR01769 145 YFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLI-VGGGI 185 (205)
T ss_pred HcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEE-EeCCC
Confidence 99999999997 568999999999999987 45443
No 60
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.54 E-value=0.04 Score=51.37 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
..|+..++.|+|.|.+=|--+. .-|. ... ....+.+++.++.| +.++ |+. .+++++ .+++ +
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~-~~~~----~~~----~~~i~~i~~~~~~p-v~~~---GgI-~~~e~~----~~~~-~ 93 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGA-KGGE----PVN----LELIEEIVKAVGIP-VQVG---GGI-RSLEDI----ERLL-D 93 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCcc-ccCC----CCC----HHHHHHHHHhcCCC-EEEe---CCc-CCHHHH----HHHH-H
Confidence 3577788899999975543221 1112 222 33445566767777 4444 455 477776 4677 5
Q ss_pred hCCCEEEeCCCccchHHHHHHHHHc-CC-ceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVEA-GI-AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~a-GI-PV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~ 260 (384)
.|||.|-+-...-+..+.++.+.+. |- +++--+.+ +. +.+...|-........++.++.++++||+.|++=.
T Consensus 94 ~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~ 167 (234)
T cd04732 94 LGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDA-KD-----GKVATKGWLETSEVSLEELAKRFEELGVKAIIYTD 167 (234)
T ss_pred cCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEe-eC-----CEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEe
Confidence 8999998843322223445555543 32 33322222 11 11111110011123567788999999999998765
Q ss_pred C---------CHHHHHHHHhhcCCCEEEEc
Q 016682 261 V---------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 261 V---------p~ela~~It~~l~IPtIGIG 281 (384)
+ +-++++.+.+.+++|++..|
T Consensus 168 ~~~~g~~~g~~~~~i~~i~~~~~ipvi~~G 197 (234)
T cd04732 168 ISRDGTLSGPNFELYKELAAATGIPVIASG 197 (234)
T ss_pred ecCCCccCCCCHHHHHHHHHhcCCCEEEec
Confidence 5 25889999999999988654
No 61
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.46 E-value=0.16 Score=49.19 Aligned_cols=96 Identities=22% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCcEEE-EecCCh----HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCC
Q 016682 91 GEPITM-VTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY 165 (384)
Q Consensus 91 g~~I~m-lTAyD~----~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY 165 (384)
+.|+.. +...|. ..|+.++++|+|+|-+--+--....|. ...-..+.+.+.+++|++.++.| |++-+.. +
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~--~~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~--~ 172 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGR--QLGQDPEAVANLLKAVKAAVDIP-LLVKLSP--Y 172 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc--ccccCHHHHHHHHHHHHHccCCC-EEEEeCC--C
Confidence 445443 555543 447788889999994321111111111 12234566677788888877666 7777763 2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
.+.++..+.+..+. ++|+|+|.+-++
T Consensus 173 -~~~~~~~~~a~~l~-~~Gad~i~~~~~ 198 (289)
T cd02810 173 -FDLEDIVELAKAAE-RAGADGLTAINT 198 (289)
T ss_pred -CCHHHHHHHHHHHH-HcCCCEEEEEcc
Confidence 36677777666555 799999998654
No 62
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.46 E-value=0.061 Score=52.70 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=72.8
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCC
Q 016682 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgG 227 (384)
+||. ..+.+.+..-+.+-+++ +.|+++|-+-|.+ +|..+.++..++ .++||+.|+|.
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~-~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~---------- 78 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLL-SYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY---------- 78 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHH-HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC----------
Confidence 5663 24567776666776767 6899999998863 666777777665 36999877441
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhcCCCEEEEc
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l~IPtIGIG 281 (384)
.-.+.++.++..+++||+++++-.. + +++ .+.|++++++|++..-
T Consensus 79 ---------~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 79 ---------GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred ---------CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 1246688999999999999987532 1 233 3567888999999885
No 63
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.43 E-value=0.077 Score=50.73 Aligned_cols=154 Identities=20% Similarity=0.247 Sum_probs=90.1
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
..|+.++++|+|.|.+=|--+... ..+.. +...+.|++.++.| |+++ |+. .|.+++ .+++ +
T Consensus 34 ~~a~~~~~~G~~~i~i~dl~~~~~-----~~~~~----~~~i~~i~~~~~ip-v~~~---GGi-~s~~~~----~~~l-~ 94 (253)
T PRK02083 34 ELAKRYNEEGADELVFLDITASSE-----GRDTM----LDVVERVAEQVFIP-LTVG---GGI-RSVEDA----RRLL-R 94 (253)
T ss_pred HHHHHHHHcCCCEEEEEeCCcccc-----cCcch----HHHHHHHHHhCCCC-EEee---CCC-CCHHHH----HHHH-H
Confidence 567888899999998766543111 11222 45556677777667 5665 566 366666 4566 4
Q ss_pred hCCCEEEeCCCccchHHHHHHHHHc-C-CceeeeccCC------cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVEA-G-IAVMGHVGLT------PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~a-G-IPV~gHiGLt------PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
.||++|-+--......+.++.+.+. | -.++--+.+- |=++..-+++ +......++.++.++++|++
T Consensus 95 ~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~g~~ 168 (253)
T PRK02083 95 AGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR------KPTGLDAVEWAKEVEELGAG 168 (253)
T ss_pred cCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc------eecCCCHHHHHHHHHHcCCC
Confidence 8999998833211223445555543 1 1122222211 1011111121 11123557778888999999
Q ss_pred EEEecCCC---------HHHHHHHHhhcCCCEEEEc
Q 016682 255 SVVLECVP---------PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 255 ~IvlE~Vp---------~ela~~It~~l~IPtIGIG 281 (384)
.|++-.+. -++++++++.+++|+|.-|
T Consensus 169 ~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~G 204 (253)
T PRK02083 169 EILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASG 204 (253)
T ss_pred EEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEEC
Confidence 88774433 4889999999999998665
No 64
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.34 E-value=1.3 Score=44.13 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=128.4
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK- 152 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~- 152 (384)
+|+.++ ...++++--+-..++||..+++ .+|+.+.++|+--+....-. ...++.+...++..++..+
T Consensus 4 v~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~ 76 (285)
T PRK07709 4 VSMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARH-------MTGFKTVVAMVKALIEEMNI 76 (285)
T ss_pred CcHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhh-------cCCHHHHHHHHHHHHHHcCC
Confidence 455554 4456677889999999999995 46777999998332211111 0345556667777776554
Q ss_pred -CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccc
Q 016682 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 153 -~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~ 224 (384)
.| |+.-+.-| . +.+.. .+.+ ++|...|.+-|.. +|-+...+.++ ..|++|=|=||-.+....-
T Consensus 77 ~VP-V~lHLDHg-~--~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~ 147 (285)
T PRK07709 77 TVP-VAIHLDHG-S--SFEKC----KEAI-DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDD 147 (285)
T ss_pred CCc-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCC
Confidence 45 77777752 2 44444 4677 5899999997763 34444444444 5799997777755532110
Q ss_pred -cCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe------------cCCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchh
Q 016682 225 -LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL------------ECVPPPVAAAATSALQIPTIGIGAGPFC-SGQV 290 (384)
Q Consensus 225 -lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl------------E~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQv 290 (384)
..+ ...=-+.++|.+.++ +-|+|+|-+ +-+.-++.++|.+++++|+. +-.|++. |=|+
T Consensus 148 ~~~~-~~~yT~peeA~~Fv~------~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLV-LHGgSG~~~e~~ 219 (285)
T PRK07709 148 VIAE-GVIYADPAECKHLVE------ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLV-LHGGTGIPTADI 219 (285)
T ss_pred cccc-cccCCCHHHHHHHHH------HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEE-EeCCCCCCHHHH
Confidence 000 000123455554443 359998874 23456889999999999974 5444443 3332
Q ss_pred hhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 291 LVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 291 LV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
. --=-+|.. | +.-+-++.....+++++|.++
T Consensus 220 ~-~ai~~Gi~----------K-iNi~T~l~~a~~~~~~~~~~~ 250 (285)
T PRK07709 220 E-KAISLGTS----------K-INVNTENQIEFTKAVREVLNK 250 (285)
T ss_pred H-HHHHcCCe----------E-EEeChHHHHHHHHHHHHHHHh
Confidence 2 11123443 1 223345555566666666644
No 65
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.33 E-value=0.24 Score=45.88 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=73.3
Q ss_pred hhCCCcE-EEEecCChH----HHHHHHHcCCCEE-E-ecchhhhh-hccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 88 HKNGEPI-TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 88 k~~g~~I-~mlTAyD~~----sA~iae~AGiD~I-l-VGDSl~mv-~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
...+.|+ +-++..|.. .|+.+.++|+|.| + .|-...+. --+|.....-..+.+.+.+++|++..+.| +.++
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk 129 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVK 129 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEE
Confidence 3444444 445666654 7888889999999 4 33211111 11222223335667778888888777645 6777
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------cchHHHHHHHHH-cCCceeee
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGH 214 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~-aGIPV~gH 214 (384)
+.. ++... +++.+.+.+ +++.|++.|.+-+.. ....+.++.+.+ .+|||++.
T Consensus 130 ~r~-~~~~~-~~~~~~~~~-l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~ 189 (231)
T cd02801 130 IRL-GWDDE-EETLELAKA-LEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIAN 189 (231)
T ss_pred Eee-ccCCc-hHHHHHHHH-HHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEe
Confidence 764 44322 456555545 447899999775541 123456666665 37888864
No 66
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.32 E-value=0.018 Score=55.60 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=85.0
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC--CcEEEeCCCCC-CcCCHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPFGT-YESSTNQAVDTAVR 178 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~--~~vvaDmPfgs-Y~~s~e~av~nA~r 178 (384)
+-+.+-++++|+-.|.+-|. -.|++....++.+||+...++++.+... -||++=+.--. .....+++++-+..
T Consensus 88 ~~tv~~~~~aG~agi~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 45677889999999999999 4456778889999999999999877643 45555444211 12467899998876
Q ss_pred HHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 179 l~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
.. ++|||+|.+++- .. .+.|+.+++ -+.|++-..+ |- + -..+.|++.|...|.
T Consensus 164 Y~-eAGAD~ifi~~~-~~-~~~i~~~~~~~~~Pl~v~~~--~~-------------~--------~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 164 YA-EAGADMIFIPGL-QS-EEEIERIVKAVDGPLNVNPG--PG-------------T--------LSAEELAELGVKRVS 217 (238)
T ss_dssp HH-HTT-SEEEETTS-SS-HHHHHHHHHHHSSEEEEETT--SS-------------S--------S-HHHHHHTTESEEE
T ss_pred HH-HcCCCEEEeCCC-CC-HHHHHHHHHhcCCCEEEEcC--CC-------------C--------CCHHHHHHCCCcEEE
Confidence 66 799999999996 32 333555553 3678765421 11 1 145567777877776
Q ss_pred ecCC
Q 016682 258 LECV 261 (384)
Q Consensus 258 lE~V 261 (384)
...-
T Consensus 218 ~~~~ 221 (238)
T PF13714_consen 218 YGNS 221 (238)
T ss_dssp ETSH
T ss_pred EcHH
Confidence 6544
No 67
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.29 E-value=0.35 Score=48.40 Aligned_cols=122 Identities=24% Similarity=0.244 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------------cchHHHH
Q 016682 135 ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------------PSRITAA 201 (384)
Q Consensus 135 VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------------~e~~~~I 201 (384)
-.+|.++...+...+..+.| |++.+ + + .++++..+.+.+ ++++|+|+|-|--+. +...+.+
T Consensus 82 ~g~~~~~~~i~~~~~~~~~p-vi~si-~-g--~~~~~~~~~a~~-~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv 155 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIP-VIASL-N-G--VSAGGWVDYARQ-IEEAGADALELNIYALPTDPDISGAEVEQRYLDIL 155 (325)
T ss_pred cCHHHHHHHHHHHHhccCCe-EEEEe-C-C--CCHHHHHHHHHH-HHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHH
Confidence 46788887777665544555 77776 3 3 366666665554 557899998764321 1124667
Q ss_pred HHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-C-----------------
Q 016682 202 RGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-P----------------- 262 (384)
Q Consensus 202 ~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p----------------- 262 (384)
++++++ .+||+-=+ +| + ..++.+-+++++++||++|.+-.- +
T Consensus 156 ~~v~~~~~iPv~vKl--~p--------~---------~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~gl 216 (325)
T cd04739 156 RAVKSAVTIPVAVKL--SP--------F---------FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLL 216 (325)
T ss_pred HHHHhccCCCEEEEc--CC--------C---------ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCc
Confidence 777754 78987542 22 1 014677888899999999988641 0
Q ss_pred ---------HHHHHHHHhhcCCCEEEEc
Q 016682 263 ---------PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 263 ---------~ela~~It~~l~IPtIGIG 281 (384)
-+.++++.+.+++|+||.|
T Consensus 217 SG~~~~~~al~~v~~v~~~~~ipIig~G 244 (325)
T cd04739 217 SSPAEIRLPLRWIAILSGRVKASLAASG 244 (325)
T ss_pred CCccchhHHHHHHHHHHcccCCCEEEEC
Confidence 1345678888899998866
No 68
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.27 E-value=0.056 Score=53.22 Aligned_cols=141 Identities=26% Similarity=0.331 Sum_probs=93.0
Q ss_pred CCCcCCHHHHHHHHHHHHHHh-------CCCEEEeC---CCc------cchHHHHHHHHHcCCceeeeccCCcccccccC
Q 016682 163 GTYESSTNQAVDTAVRILKEG-------GMDAIKLE---GGS------PSRITAARGIVEAGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~kea-------GAdaVKLE---gg~------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lg 226 (384)
|.| |.++|++.| |+-+|. |-+-|||| |.. .|..+.-+.|++.|.-|+-- +
T Consensus 79 Gc~--tA~EAv~~A-~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY----------~- 144 (267)
T CHL00162 79 GCQ--TAEEAIRMA-FLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPY----------I- 144 (267)
T ss_pred CCC--CHHHHHHHH-HHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeec----------C-
Confidence 455 899999988 555565 47899999 221 34555556677888877631 1
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHhhcCCCEE---EEcCCC--------CC
Q 016682 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTI---GIGAGP--------FC 286 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp---------~ela~~It~~l~IPtI---GIGAG~--------~c 286 (384)
++| +--|+.|+++||.+|..=+-| ...++.|.++.++|+| |||.+. +|
T Consensus 145 -------~~D-----~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGa 212 (267)
T CHL00162 145 -------NAD-----PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGA 212 (267)
T ss_pred -------CCC-----HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCC
Confidence 111 236889999999998865433 6788999999999988 555554 36
Q ss_pred CchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCC
Q 016682 287 SGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPSH 344 (384)
Q Consensus 287 DGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h 344 (384)
|| ||+..-+. . .+ -| ..+...+..|+++=+..-.+|.-|...+
T Consensus 213 Dg-VL~nSaIa---k----A~-dP------~~mA~a~~~AV~AGR~A~~AG~~~~~~~ 255 (267)
T CHL00162 213 SG-VLLNTAVA---Q----AK-NP------EQMAKAMKLAVQAGRLAYLAGRMPKKKY 255 (267)
T ss_pred CE-Eeecceee---c----CC-CH------HHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 66 44444333 1 11 12 5556667777777777778888886543
No 69
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.21 E-value=0.12 Score=50.56 Aligned_cols=154 Identities=23% Similarity=0.273 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCCEEEecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCC-CcEE---EeCCCCCCcCCHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLV---GDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~-~~vv---aDmPfgsY~~s~e~av~nA~ 177 (384)
.-|..++++|||.|=+|.... .+.+++-+..+ + |.+ +.+++..++ ++.+ ++ .+-+|..-|....+.-.
T Consensus 25 ~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~--~-e~i---~~~~~~~~~~~l~~~~r~~-~~~~~~~~p~~~~~~di 97 (275)
T cd07937 25 PIAEALDEAGFFSLEVWGGATFDVCMRFLNEDP--W-ERL---RELRKAMPNTPLQMLLRGQ-NLVGYRHYPDDVVELFV 97 (275)
T ss_pred HHHHHHHHcCCCEEEccCCcchhhhccccCCCH--H-HHH---HHHHHhCCCCceehhcccc-cccCccCCCcHHHHHHH
Confidence 357889999999998874221 13344443322 2 223 333333222 2221 11 11134444555666666
Q ss_pred HHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 178 RILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
+...+.|++.|.+-... +.+.+.|+.+.+.|..|+.++..+-- ++. .-+.+++-++.+.++||+
T Consensus 98 ~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-----------~~~--~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 98 EKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-----------PVH--TLEYYVKLAKELEDMGAD 164 (275)
T ss_pred HHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-----------CCC--CHHHHHHHHHHHHHcCCC
Confidence 66668999999997652 34567778888899988876543211 232 235677788889999999
Q ss_pred EEEec-C----CCH---HHHHHHHhhcCCC
Q 016682 255 SVVLE-C----VPP---PVAAAATSALQIP 276 (384)
Q Consensus 255 ~IvlE-~----Vp~---ela~~It~~l~IP 276 (384)
.|.+- . .|. ++.+.+.+++++|
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 194 (275)
T cd07937 165 SICIKDMAGLLTPYAAYELVKALKKEVGLP 194 (275)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHhCCCe
Confidence 99976 2 253 4455555666644
No 70
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.20 E-value=0.17 Score=49.54 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=105.6
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
+++++.+.-. -.|+.++++|+|.|++-.-.-.-.. ....+.|..-|-.-++.|++..+.| +-++
T Consensus 23 ~~~~iie~A~-------------~ea~~l~~~GvDgiiveN~~D~Py~--~~~~~etvaaM~~i~~~v~~~~~~p-~GVn 86 (254)
T PF03437_consen 23 SMEEIIERAV-------------REAEALEEGGVDGIIVENMGDVPYP--KRVGPETVAAMARIAREVRREVSVP-VGVN 86 (254)
T ss_pred CHHHHHHHHH-------------HHHHHHHHCCCCEEEEecCCCCCcc--CCCCHHHHHHHHHHHHHHHHhCCCC-EEee
Confidence 6777666443 2588999999999998643222111 1245777788888888888887655 5566
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------cchHHHHHHH--HHcCCceeeeccCCcccccccC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PSRITAARGI--VEAGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----------~e~~~~I~al--v~aGIPV~gHiGLtPQ~~~~lg 226 (384)
+=+ .++..++. +-..+||+-|.+|.-. ....+.++.- ..+.|.+++ ++.+.+...++
T Consensus 87 vL~----nd~~aala----iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila--DV~~kh~~~l~ 156 (254)
T PF03437_consen 87 VLR----NDPKAALA----IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILA--DVHVKHSSPLA 156 (254)
T ss_pred eec----CCCHHHHH----HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEe--eechhhcccCC
Confidence 543 24445543 3456899999987420 1122222222 235577765 45555444432
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhhcCCCEEEEcCCCC
Q 016682 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~l~IPtIGIGAG~~ 285 (384)
.++-+ +..+ .+.+..+||+|++-+- +.+.++++.+.+++|++ +|+|-.
T Consensus 157 -----~~~~~---~~~~--~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVl-vGSGvt 210 (254)
T PF03437_consen 157 -----TRDLE---EAAK--DAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVL-VGSGVT 210 (254)
T ss_pred -----CCCHH---HHHH--HHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEE-EecCCC
Confidence 34432 2222 3457799999999764 36777899999999999 888744
No 71
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.15 E-value=1.6 Score=43.54 Aligned_cols=219 Identities=15% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCHHHHH-HhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC
Q 016682 79 VTLTHLR-QKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 79 ~t~~~lr-~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~ 153 (384)
+++.++. ..++++--+-..|+||+.+++ .+|+.+.++|+-......-. ..++.+...++..++.++.
T Consensus 4 v~~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~--------~g~~~~~~~~~~~A~~~~V 75 (284)
T PRK12857 4 VTVAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKY--------AGIEYISAMVRTAAEKASV 75 (284)
T ss_pred CcHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhh--------CCHHHHHHHHHHHHHHCCC
Confidence 4555544 455666789999999999995 46778999998332222221 2366677778888888887
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHH----HHHHHHcCCceeeeccCCcccccc-c
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITA----ARGIVEAGIAVMGHVGLTPQAISV-L 225 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~----I~alv~aGIPV~gHiGLtPQ~~~~-l 225 (384)
| |+.-+.-| . +.+.. .+.+ ++|...|.+-|.. +|-.+. ++.....||.|=|=||-.+-...- .
T Consensus 76 P-ValHLDH~-~--~~e~i----~~ai-~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~ 146 (284)
T PRK12857 76 P-VALHLDHG-T--DFEQV----MKCI-RNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDIT 146 (284)
T ss_pred C-EEEECCCC-C--CHHHH----HHHH-HcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCC
Confidence 7 77777653 2 44433 4566 5899999997763 333333 444446899997777755522110 0
Q ss_pred CC-ccccCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchhh
Q 016682 226 GG-FRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQVL 291 (384)
Q Consensus 226 gG-frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQvL 291 (384)
.+ -...=-+.+++.+.+ ++-|+|+|=+= -+.-++.++|.+.+++|+. +-.|+++ |-|+.
T Consensus 147 ~~~~~~~~T~pe~a~~Fv------~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLV-lHGgSG~~~e~~~ 219 (284)
T PRK12857 147 VDEREAAMTDPEEARRFV------EETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIV-LHGSSGVPDEAIR 219 (284)
T ss_pred cccchhhcCCHHHHHHHH------HHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEE-EeCCCCCCHHHHH
Confidence 00 000011334444433 34589987542 2447899999999999974 5444443 33322
Q ss_pred hHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 292 VYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 292 V~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
=. ==+|.. | +.-+-++.....+++++|..+
T Consensus 220 ~a-i~~Gi~----------K-iNi~T~~~~a~~~~~~~~~~~ 249 (284)
T PRK12857 220 KA-ISLGVR----------K-VNIDTNIREAFVARLREVLEK 249 (284)
T ss_pred HH-HHcCCe----------E-EEeCcHHHHHHHHHHHHHHHh
Confidence 11 012332 1 223345555566666666644
No 72
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.13 E-value=0.27 Score=47.81 Aligned_cols=110 Identities=19% Similarity=0.116 Sum_probs=70.5
Q ss_pred cEEEEecCCh------HHHHHHHHcCCCEEEecchh---------hhhhccCCCCcCCCHHHHHHHHHHHHcc-cCCCcE
Q 016682 93 PITMVTAYDY------PSAVHLDSAGIDICLVGDSA---------AMVVHGHDTTLPITLEEMLVHCRAVARG-AKRPLL 156 (384)
Q Consensus 93 ~I~mlTAyD~------~sA~iae~AGiD~IlVGDSl---------~mv~lG~~dT~~VtldeMl~h~raV~Rg-a~~~~v 156 (384)
.|.-+|+=|. .-++.++++|+|+|=.|--. .....-..=...+|+++.+..++.|++- .+.|++
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv 91 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG 91 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4666676652 22566788999999766211 0000000004467899999999999865 566643
Q ss_pred EEeCCCCCCcCCH------HHHHHHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 157 VGDLPFGTYESST------NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 157 vaDmPfgsY~~s~------e~av~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
.++| .|+ ++- .+.++++|+++|-+=|-. ++..+.++++.+.|+..+
T Consensus 92 -----~m~Y-~Npi~~~G~e~f----~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 92 -----LLTY-YNLIFRKGVEEF----YAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred -----EEEe-ccHHhhhhHHHH----HHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 2456 366 444 345568999999987753 466778888888897643
No 73
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.10 E-value=0.19 Score=49.28 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=105.5
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
.....++.+|.+++-|.= -.....+ +-+.++.+.+. . .-.+.-+.- |.+ |.+||++.| |+-+|
T Consensus 25 ~~~~ai~asg~~ivTval----rR~~~~~----~~~~~~~~i~~----~-~~~~lpNTa-G~~--ta~eAv~~a-~lare 87 (250)
T PRK00208 25 VMQEAIEASGAEIVTVAL----RRVNLGQ----GGDNLLDLLPP----L-GVTLLPNTA-GCR--TAEEAVRTA-RLARE 87 (250)
T ss_pred HHHHHHHHhCCCeEEEEE----EeecCCC----CcchHHhhccc----c-CCEECCCCC-CCC--CHHHHHHHH-HHHHH
Confidence 345667888999997641 0001111 11334443331 1 111223332 444 899999988 44445
Q ss_pred -hCCCEEEeC--C-C---ccchHHHHHHHH---HcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcC
Q 016682 183 -GGMDAIKLE--G-G---SPSRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (384)
Q Consensus 183 -aGAdaVKLE--g-g---~~e~~~~I~alv---~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG 252 (384)
.|-+-|||| + . .++..++|++.. +.|.-|+- .+ -.+ +..|++++++|
T Consensus 88 ~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlp----------yc------~~d-------~~~ak~l~~~G 144 (250)
T PRK00208 88 ALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP----------YC------TDD-------PVLAKRLEEAG 144 (250)
T ss_pred HhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEE----------Ee------CCC-------HHHHHHHHHcC
Confidence 567999999 2 2 144555555554 44866541 01 111 45789999999
Q ss_pred CcEEEe--c------CC-CHHHHHHHHhhcCCCEE---EEcCC--------CCCCchhhhHhhhhcCCCCCCCCCCCcch
Q 016682 253 CFSVVL--E------CV-PPPVAAAATSALQIPTI---GIGAG--------PFCSGQVLVYHDLLGMMQHPHHAKVTPKF 312 (384)
Q Consensus 253 Af~Ivl--E------~V-p~ela~~It~~l~IPtI---GIGAG--------~~cDGQvLV~~DlLG~~~~P~~~~~~PkF 312 (384)
|++|-. + ++ ..+.++.|.+..++|+| |||.+ -+||| |||..=+.. .+....-
T Consensus 145 ~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdg-VlV~SAItk-------a~dP~~m 216 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADA-VLLNTAIAV-------AGDPVAM 216 (250)
T ss_pred CCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCE-EEEChHhhC-------CCCHHHH
Confidence 999944 2 22 37888999998999988 45554 46777 555553331 1111223
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhccCCCCCCCC
Q 016682 313 CKQFARVGDVINKALLEYKEEVTNGSFPGPSH 344 (384)
Q Consensus 313 vk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h 344 (384)
.+. +.+|+++=+..-.+|.-|..++
T Consensus 217 a~a-------f~~Av~aGr~a~~ag~~~~~~~ 241 (250)
T PRK00208 217 ARA-------FKLAVEAGRLAYLAGRIPKRDY 241 (250)
T ss_pred HHH-------HHHHHHHHHHHHHCCCCCccCc
Confidence 344 3455555555556777776543
No 74
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.10 E-value=0.31 Score=45.52 Aligned_cols=129 Identities=19% Similarity=0.179 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE---EeCCCCCC--cCCHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDLPFGTY--ESSTNQAVDTAVR 178 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv---aDmPfgsY--~~s~e~av~nA~r 178 (384)
.|+.+.++|+.++-++ ++ ...+.|++....|++. -|++-... ..+.+++ +
T Consensus 32 ~a~~~~~~G~~~~~~~----------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~-----~ 86 (219)
T cd04729 32 MALAAVQGGAVGIRAN----------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEV-----D 86 (219)
T ss_pred HHHHHHHCCCeEEEcC----------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHH-----H
Confidence 4666788888775542 11 2335555556677552 25431111 1122233 3
Q ss_pred HHHHhCCCEEEeCCCc------cchHHHHHHHHHcC-CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHc
Q 016682 179 ILKEGGMDAIKLEGGS------PSRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (384)
Q Consensus 179 l~keaGAdaVKLEgg~------~e~~~~I~alv~aG-IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA 251 (384)
...++||+.|-+-... .+..+.++++.+.| ++++.- -.|. ++++..+++
T Consensus 87 ~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~-----------------v~t~-------~ea~~a~~~ 142 (219)
T cd04729 87 ALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMAD-----------------ISTL-------EEALNAAKL 142 (219)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEE-----------------CCCH-------HHHHHHHHc
Confidence 4447999999883210 36778888898888 887631 0132 245777889
Q ss_pred CCcEEEecC------------CCHHHHHHHHhhcCCCEEEEc
Q 016682 252 GCFSVVLEC------------VPPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 252 GAf~IvlE~------------Vp~ela~~It~~l~IPtIGIG 281 (384)
|++.|.+.. ..-+..+.|.+.+++|++..|
T Consensus 143 G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~G 184 (219)
T cd04729 143 GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEG 184 (219)
T ss_pred CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeC
Confidence 999997641 124788999999999999654
No 75
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.05 E-value=1.3 Score=44.09 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=128.3
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc--
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-- 151 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-- 151 (384)
++..++ +..++++--+-..++||+.+++ .+|+.+.++|+--....... ...++.+...+++.+..+
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~-------~~g~~~~~~~~~~~a~~~~~ 76 (288)
T TIGR00167 4 VDVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKY-------IAGLGAISAMVKAMSEAYPY 76 (288)
T ss_pred ccHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhc-------cCCHHHHHHHHHHHHHhccC
Confidence 345554 4456677789999999999995 46777999998432222111 023777888888888777
Q ss_pred CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHH----HHHcCCceeeeccCCcccccc
Q 016682 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARG----IVEAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 152 ~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~a----lv~aGIPV~gHiGLtPQ~~~~ 224 (384)
+.| |+.-+.-| . +.+.. .+-+ +.|...|.+-|.. +|-....+. ....||.|=|=||-......-
T Consensus 77 ~VP-V~lHLDHg-~--~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~ 147 (288)
T TIGR00167 77 GVP-VALHLDHG-A--SEEDC----AQAV-KAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDG 147 (288)
T ss_pred CCc-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCC
Confidence 666 77777653 2 44443 4556 5899999997763 333333333 335799997777755522211
Q ss_pred cCCcc-ccCC-CHHHHHHHHHHHHHHHHcCCcEEEec------------C-CCHHHHHHHHhhcCCCEEEEcCCCCC-Cc
Q 016682 225 LGGFR-PQGK-NVTSAVKVVETALALQEVGCFSVVLE------------C-VPPPVAAAATSALQIPTIGIGAGPFC-SG 288 (384)
Q Consensus 225 lgGfr-vqGr-t~~~a~~ll~rAkAleeAGAf~IvlE------------~-Vp~ela~~It~~l~IPtIGIGAG~~c-DG 288 (384)
..... -.-- +.+++.+.+ ++-|+|+|=+= - +.-++.++|.+.+++|+. +-.|+++ |-
T Consensus 148 ~~~~~~~~~~T~peea~~Fv------~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLV-lHGgSG~~~e 220 (288)
T TIGR00167 148 VSVADESALYTDPEEAKEFV------KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLV-LHGGSGIPDE 220 (288)
T ss_pred cccccccccCCCHHHHHHHH------hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEE-EeCCCCCCHH
Confidence 00000 0001 233333333 34689988642 2 567899999999999965 5444443 33
Q ss_pred hhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 289 QVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 289 QvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
|+.=.- -+|.. | +.-+-++.....+++++|.++
T Consensus 221 ~~~~ai-~~Gi~----------K-iNi~T~l~~a~~~~~~~~~~~ 253 (288)
T TIGR00167 221 EIKKAI-SLGVV----------K-VNIDTELQIAFAAAVRNYYAE 253 (288)
T ss_pred HHHHHH-HcCCe----------E-EEcChHHHHHHHHHHHHHHHh
Confidence 432110 12433 1 233345555566666666644
No 76
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.49 Score=48.29 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=122.3
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHH
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~ 171 (384)
.|...-.+=+....+.+-++|+|+|.+|-. .-..-+.. ...|.+||...++-.-..-...+|..++-. . .+..+
T Consensus 6 ~~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~--~-~~~~~ 79 (347)
T COG0826 6 KPELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLL--H-NDELE 79 (347)
T ss_pred cceeecCCCCHHHHHHHHHcCCCEEEeCCc-cccccccc--ccCCHHHHHHHHHHHHHcCCeEEEEecccc--c-cchhh
Confidence 345555666667777788899999999966 22333333 577888887777755443334556677654 3 23444
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcC--CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG--IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aG--IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
.+....+.+.+.|+|+|-+-| .-.|..+.+.+ +|+.. .+|... .+ .+.++-+.
T Consensus 80 ~~~~~l~~l~e~GvDaviv~D-----pg~i~l~~e~~p~l~ih~----S~q~~v---------~N-------~~~~~f~~ 134 (347)
T COG0826 80 TLERYLDRLVELGVDAVIVAD-----PGLIMLARERGPDLPIHV----STQANV---------TN-------AETAKFWK 134 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEcC-----HHHHHHHHHhCCCCcEEE----eeeEec---------CC-------HHHHHHHH
Confidence 455566666689999999966 35688888888 77742 233211 11 34678899
Q ss_pred HcCCcEEEecCC-CHHHHHHHHhhcC-CCEEEEcCCC---CCCchhhhHhhhhcCCC
Q 016682 250 EVGCFSVVLECV-PPPVAAAATSALQ-IPTIGIGAGP---FCSGQVLVYHDLLGMMQ 301 (384)
Q Consensus 250 eAGAf~IvlE~V-p~ela~~It~~l~-IPtIGIGAG~---~cDGQvLV~~DlLG~~~ 301 (384)
+-|+--+|+.-. +.+.+++|.++++ +++=.|--|. .|+|+-+..+=+-|-.+
T Consensus 135 ~~G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia~SgRC~ls~~~~~~~~ 191 (347)
T COG0826 135 ELGAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIAYSGRCLLSNYFTGRSA 191 (347)
T ss_pred HcCCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhccCchhhhhhhccCCCC
Confidence 999999999854 7777789999885 7765555554 57999999988877653
No 77
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.04 E-value=0.13 Score=49.63 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHH
Q 016682 138 EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRIT 199 (384)
Q Consensus 138 deMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~ 199 (384)
+.+-.....+. .+. .+++.+-+ .|+++.++.+..+. + ++++|-|--|. +...+
T Consensus 55 ~~i~~e~~~~~--~~~-~vivnv~~----~~~ee~~~~a~~v~-~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~ 125 (231)
T TIGR00736 55 SYIIEQIKKAE--SRA-LVSVNVRF----VDLEEAYDVLLTIA-E-HADIIEINAHCRQPEITEIGIGQELLKNKELLKE 125 (231)
T ss_pred HHHHHHHHHHh--hcC-CEEEEEec----CCHHHHHHHHHHHh-c-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHH
Confidence 33334455553 233 48888764 58899988776654 3 79998875321 34566
Q ss_pred HHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-C------HHHHHHHHhh
Q 016682 200 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-P------PPVAAAATSA 272 (384)
Q Consensus 200 ~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p------~ela~~It~~ 272 (384)
.++++++.++||.-=|-+ | -+. ...++-|++++++||++|-+.+. + -+.++.|.+.
T Consensus 126 iv~av~~~~~PVsvKiR~---------~-----~~~---~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 126 FLTKMKELNKPIFVKIRG---------N-----CIP---LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEE 188 (231)
T ss_pred HHHHHHcCCCcEEEEeCC---------C-----CCc---chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh
Confidence 777777778898643111 1 121 35678899999999999999865 3 4678999999
Q ss_pred cC-CCEEEEc
Q 016682 273 LQ-IPTIGIG 281 (384)
Q Consensus 273 l~-IPtIGIG 281 (384)
++ ||+||-|
T Consensus 189 ~~~ipIIgNG 198 (231)
T TIGR00736 189 FNDKIIIGNN 198 (231)
T ss_pred cCCCcEEEEC
Confidence 95 9988866
No 78
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.04 E-value=0.13 Score=51.48 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=89.4
Q ss_pred EecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHH
Q 016682 97 VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTA 176 (384)
Q Consensus 97 lTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA 176 (384)
.+.=|.+.-+++.+.|.|++.+-- +.+..+-+.+ ..+. .+....--+.| +++-+ | +.++++..+.|
T Consensus 18 ~g~td~~fR~l~~~~g~~~~~tem-vs~~~~~~~~--~~~~------~~~~~~~~~~~-~~vQl-~---g~~~~~~~~aa 83 (321)
T PRK10415 18 AGITDRPFRTLCYEMGAGLTVSEM-MSSNPQVWES--DKSR------LRMVHIDEPGI-RTVQI-A---GSDPKEMADAA 83 (321)
T ss_pred CCCCcHHHHHHHHHHCCCEEEEcc-EEcchhhhcC--HhHH------HHhccCccCCC-EEEEE-e---CCCHHHHHHHH
Confidence 366678888888888888765431 1110000000 0110 00001111233 44555 2 34788887776
Q ss_pred HHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHH
Q 016682 177 VRILKEGGMDAIKLEGGS------------------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTS 237 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~ 237 (384)
.++ ++.|+++|-|--|. +...+.+++++++ ++||.--+ -.|+ +. .
T Consensus 84 ~~~-~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKi---------R~G~-----~~-~ 147 (321)
T PRK10415 84 RIN-VESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKI---------RTGW-----AP-E 147 (321)
T ss_pred HHH-HHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEE---------Eccc-----cC-C
Confidence 554 57899999887552 2234445555543 55654221 1222 21 1
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCC----------HHHHHHHHhhcCCCEEEEcCC
Q 016682 238 AVKVVETALALQEVGCFSVVLECVP----------PPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 238 a~~ll~rAkAleeAGAf~IvlE~Vp----------~ela~~It~~l~IPtIGIGAG 283 (384)
-...++-++.++++|++.|.+-+.. -+.+++|.++++||+||-|.=
T Consensus 148 ~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 148 HRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred cchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 1356777888999999999877542 467789999999999987643
No 79
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.02 E-value=0.32 Score=47.87 Aligned_cols=141 Identities=19% Similarity=0.141 Sum_probs=89.5
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
+...|+.+.++|+.+++.+-+ ..|++++... .+.|+ ...+ |+++ +++...+.+ +.+
T Consensus 83 ~~~la~aa~~~g~~~~~~~~~------------~~~~~~i~~~-------~~~~~-~~ql-~~~~--~~~~~~~~i-~~~ 138 (299)
T cd02809 83 ELATARAAAAAGIPFTLSTVS------------TTSLEEVAAA-------APGPR-WFQL-YVPR--DREITEDLL-RRA 138 (299)
T ss_pred HHHHHHHHHHcCCCEEecCCC------------cCCHHHHHHh-------cCCCe-EEEE-eecC--CHHHHHHHH-HHH
Confidence 358899999999977765322 1266766432 33563 4443 2233 566555544 444
Q ss_pred HHhCCCEEEeCCCcc-----chHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 181 KEGGMDAIKLEGGSP-----SRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 181 keaGAdaVKLEgg~~-----e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
++.|+++|-|--+.. ...+.|+.+++. ++||.-.. + .+ .++|+.++++|++
T Consensus 139 ~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~--------------v--~s-------~~~a~~a~~~G~d 195 (299)
T cd02809 139 EAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKG--------------I--LT-------PEDALRAVDAGAD 195 (299)
T ss_pred HHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEee--------------c--CC-------HHHHHHHHHCCCC
Confidence 578999988865422 124788888876 88886420 0 11 3568899999999
Q ss_pred EEEecC---------CC-HHHHHHHHhhcC--CCEEEEcCCCCCCchh
Q 016682 255 SVVLEC---------VP-PPVAAAATSALQ--IPTIGIGAGPFCSGQV 290 (384)
Q Consensus 255 ~IvlE~---------Vp-~ela~~It~~l~--IPtIGIGAG~~cDGQv 290 (384)
+|.+.. +| .+...+|.+.++ +|+| ++|.-.+|.=
T Consensus 196 ~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d 241 (299)
T cd02809 196 GIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVL--LDGGIRRGTD 241 (299)
T ss_pred EEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEE--EeCCCCCHHH
Confidence 999843 33 677788888884 8865 5555555543
No 80
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.00 E-value=1.9 Score=42.84 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=112.0
Q ss_pred HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
|...++++--+-..++||..+++. +|+.+.++|+ +..+. .. ...++.+...++..++.++.| |+.
T Consensus 5 L~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~-~~--------~~~~~~~~~~~~~~a~~~~VP-V~l 74 (276)
T cd00947 5 LKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGA-IK--------YAGLELLVAMVKAAAERASVP-VAL 74 (276)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcch-hh--------hCCHHHHHHHHHHHHHHCCCC-EEE
Confidence 556677888999999999999975 5777999998 43221 11 233777888888888888777 777
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHH----HHHHHHHcCCceeeeccCCcccccccCCcccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRIT----AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~----~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
-+.-| .+.+.. .+.+ ++|.+.|.+-|.. +|-.. .++.+...||.|=|=||-.+-......+-...
T Consensus 75 HLDH~---~~~~~i----~~ai-~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~ 146 (276)
T cd00947 75 HLDHG---SSFELI----KRAI-RAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGL 146 (276)
T ss_pred ECCCC---CCHHHH----HHHH-HhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccccc
Confidence 76653 245544 3556 5899999997763 33333 34444468999976666544221110000000
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEe-------------cCCCHHHHHHHHhhcCCCEEEEcCCCCC
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVL-------------ECVPPPVAAAATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~Ivl-------------E~Vp~ela~~It~~l~IPtIGIGAG~~c 286 (384)
=-+.+++.+.++ +-|+|+|=+ +.+.-++.++|.+.+++|+. +-.|+++
T Consensus 147 ~T~pe~a~~Fv~------~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLV-lHGgSG~ 207 (276)
T cd00947 147 LTDPEEAEEFVE------ETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLV-LHGGSGI 207 (276)
T ss_pred CCCHHHHHHHHH------HHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEE-EeCCCCC
Confidence 113344444333 358888753 22447899999999999985 5444443
No 81
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.98 E-value=0.16 Score=50.36 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=73.0
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCCccccCC
Q 016682 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGK 233 (384)
Q Consensus 165 Y~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgGfrvqGr 233 (384)
.+.+.+..-+.+-+++ +.|+++|-+=|.+ +|..+.+++.++ .++||+.|+|-+
T Consensus 24 g~iD~~~l~~lv~~li-~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~--------------- 87 (309)
T cd00952 24 DTVDLDETARLVERLI-AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTL--------------- 87 (309)
T ss_pred CCcCHHHHHHHHHHHH-HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC---------------
Confidence 3567777777777777 6999999998763 667777777664 469998774411
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhc-CCCEEEEcCCC
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIGAGP 284 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l-~IPtIGIGAG~ 284 (384)
..++.++.++..+++|||++++-.. + +++ -+.|++++ ++|++-.--..
T Consensus 88 ---~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 88 ---NTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred ---CHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 2357889999999999999887643 2 333 35678888 69999775443
No 82
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=95.95 E-value=0.23 Score=50.40 Aligned_cols=154 Identities=24% Similarity=0.280 Sum_probs=89.3
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCC-cCCHHHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRIL 180 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY-~~s~e~av~nA~rl~ 180 (384)
..-|+.+.++|+.+. +|+-- .++.+ .+...-.+.|++-++.-++++++.-... ..++++..+ +..++
T Consensus 80 ~~La~~a~~~G~~~~-~Gs~~----~~~~~------~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~-~~~~~ 147 (352)
T PRK05437 80 RKLAEAAEELGIAMG-VGSQR----AALKD------PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQR-AVEMI 147 (352)
T ss_pred HHHHHHHHHcCCCeE-ecccH----hhccC------hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHH-HHHhc
Confidence 456778999998664 44321 12222 1234445667777766667877743222 124555433 34444
Q ss_pred HHhCCCEEEeC---------CCccc---hHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 181 KEGGMDAIKLE---------GGSPS---RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 181 keaGAdaVKLE---------gg~~e---~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
++.|..|+|. |. .+ ..+.|+++++. ++||+-. ..|+ |.+ .+.|+.
T Consensus 148 -~adal~l~l~~~qe~~~p~g~-~~f~~~le~i~~i~~~~~vPVivK----------~~g~---g~s-------~~~a~~ 205 (352)
T PRK05437 148 -EADALQIHLNPLQELVQPEGD-RDFRGWLDNIAEIVSALPVPVIVK----------EVGF---GIS-------KETAKR 205 (352)
T ss_pred -CCCcEEEeCccchhhcCCCCc-ccHHHHHHHHHHHHHhhCCCEEEE----------eCCC---CCc-------HHHHHH
Confidence 3444445551 11 22 34789999986 9999843 1122 333 468889
Q ss_pred HHHcCCcEEEecC---------------------------CC-HHHHHHHHhh-cCCCEEEEcCCCCCCchhh
Q 016682 248 LQEVGCFSVVLEC---------------------------VP-PPVAAAATSA-LQIPTIGIGAGPFCSGQVL 291 (384)
Q Consensus 248 leeAGAf~IvlE~---------------------------Vp-~ela~~It~~-l~IPtIGIGAG~~cDGQvL 291 (384)
++++|+++|.+-+ +| .+.+..+.+. .++|+|+ +|.-.+|+-.
T Consensus 206 l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia--~GGI~~~~dv 276 (352)
T PRK05437 206 LADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIA--SGGIRNGLDI 276 (352)
T ss_pred HHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEE--ECCCCCHHHH
Confidence 9999999999833 33 3455566676 4888774 5555566443
No 83
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.94 E-value=0.17 Score=48.78 Aligned_cols=104 Identities=23% Similarity=0.292 Sum_probs=72.4
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc---CCceeeeccCCcccccccCC
Q 016682 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgG 227 (384)
+||. ..+.+.+...+++..++ +.|+++|-+=|.. +|..+.++..++. .+||+.|+|-
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~-~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~---------- 75 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLI-EAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA---------- 75 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC----------
Confidence 3452 33456776666666666 6899999998753 6677777777753 5888877431
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-----C-HHH---HHHHHhhcCCCEEEEcC
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-----P-PPV---AAAATSALQIPTIGIGA 282 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-----p-~el---a~~It~~l~IPtIGIGA 282 (384)
...++.++.++..+++||+++++-.. + +++ .+.|++++++|++-.-.
T Consensus 76 --------~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 76 --------NSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred --------ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 12347899999999999999997542 1 333 35677888999996633
No 84
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.93 E-value=0.3 Score=45.26 Aligned_cols=153 Identities=22% Similarity=0.233 Sum_probs=86.3
Q ss_pred ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHH
Q 016682 98 TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 98 TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~ 177 (384)
+.=|.+.=+++.+.|+|++.+---.+...+..... + .. ...+......+++-+- + .++++..+.|.
T Consensus 9 ~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~------~-~~---~~~~~~~~~p~~~qi~--g--~~~~~~~~aa~ 74 (231)
T cd02801 9 GVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRK------R-LR---LLTRNPEERPLIVQLG--G--SDPETLAEAAK 74 (231)
T ss_pred CCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHH------H-HH---hhccCccCCCEEEEEc--C--CCHHHHHHHHH
Confidence 44455555566667778776542222211111110 0 11 1112222233555553 2 36787777776
Q ss_pred HHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHH
Q 016682 178 RILKEGGMDAIKLEGGS------------------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a 238 (384)
++. ++|+|+|+|-.|. +...+.|+++.+. ++||..-+. .|+ +.+
T Consensus 75 ~~~-~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r---------~~~-----~~~-- 137 (231)
T cd02801 75 IVE-ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIR---------LGW-----DDE-- 137 (231)
T ss_pred HHH-hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEe---------ecc-----CCc--
Confidence 665 7899999997431 2345667777653 455543211 111 111
Q ss_pred HHHHHHHHHHHHcCCcEEEecCC----------CHHHHHHHHhhcCCCEEEEc
Q 016682 239 VKVVETALALQEVGCFSVVLECV----------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 239 ~~ll~rAkAleeAGAf~IvlE~V----------p~ela~~It~~l~IPtIGIG 281 (384)
.++++-++.++++|++.|.+-+. .-+.++.|.+.+++|+++-|
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 57788889999999999854221 24667889999999988754
No 85
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.93 E-value=0.093 Score=52.46 Aligned_cols=108 Identities=23% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHc---CCce
Q 016682 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEA---GIAV 211 (384)
Q Consensus 153 ~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~a---GIPV 211 (384)
.| +++-+ | +.++++..+.|.++. +.|+|+|.|--|. +...+.+++++++ ++||
T Consensus 63 ~p-~~vQl-~---g~~p~~~~~aA~~~~-~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pV 136 (312)
T PRK10550 63 TL-VRIQL-L---GQYPQWLAENAARAV-ELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPV 136 (312)
T ss_pred Cc-EEEEe-c---cCCHHHHHHHHHHHH-HcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcce
Confidence 45 66665 2 347888888887765 6899999987541 2334555565553 4787
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC-----------CCHHHHHHHHhhcCCCEEEE
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-----------VPPPVAAAATSALQIPTIGI 280 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~-----------Vp~ela~~It~~l~IPtIGI 280 (384)
.--+.+ |+ ++ ..+.++-++.++++|++.|.+-+ +.-+.+++|.+.++||+||=
T Consensus 137 svKiR~---------g~-----~~--~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~n 200 (312)
T PRK10550 137 TVKVRL---------GW-----DS--GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIAN 200 (312)
T ss_pred EEEEEC---------CC-----CC--chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEe
Confidence 643221 22 11 12357889999999999999843 12467899999999999876
Q ss_pred cC
Q 016682 281 GA 282 (384)
Q Consensus 281 GA 282 (384)
|.
T Consensus 201 Gd 202 (312)
T PRK10550 201 GE 202 (312)
T ss_pred CC
Confidence 63
No 86
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.88 E-value=0.5 Score=47.16 Aligned_cols=112 Identities=11% Similarity=0.037 Sum_probs=66.2
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
|.++.+.| +.+-+-+...|+++|+||.-.+.+=+-+-.-+ ...+.|---.=..+.++|++.++.| |++=.=-
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~---~~~~~v~R~~~~~~I~~Ik~~V~iP-VIGi~K~- 74 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADI---RAAGGVARMADPKMIKEIMDAVSIP-VMAKVRI- 74 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhh---hhcCCeeecCCHHHHHHHHHhCCCC-eEEeeeh-
Confidence 55666665 66777889999999999999888844333322 0111121111245668888888888 4432221
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc---chHHHHHHHHHc-CCceeee
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~~---e~~~~I~alv~a-GIPV~gH 214 (384)
+| +..+..+. ++|+|.| |.+. -..+.+..+... ++|+|.-
T Consensus 75 ~~-------~~Ea~~L~-eaGvDiI---DaT~r~rP~~~~~~~iK~~~~~l~MAD 118 (283)
T cd04727 75 GH-------FVEAQILE-ALGVDMI---DESEVLTPADEEHHIDKHKFKVPFVCG 118 (283)
T ss_pred hH-------HHHHHHHH-HcCCCEE---eccCCCCcHHHHHHHHHHHcCCcEEcc
Confidence 23 33444455 7999999 3321 123455555543 8888864
No 87
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=95.87 E-value=0.22 Score=54.16 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCEEEecch-hhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC---CCCCcCCHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP---FGTYESSTNQAVDTAVR 178 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDS-l~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP---fgsY~~s~e~av~nA~r 178 (384)
.-|..++++|++.|=++-. -=-+.+.+-. .-. .+.+|.+++..++..+..=++ .-+|..-|+++++.-++
T Consensus 31 ~ia~~ld~~G~~siE~~GGatf~~~~~~~~--e~p----~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 31 PIAAKLDKVGYWSLESWGGATFDACIRFLG--EDP----WERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred HHHHHHHHcCCCEEEecCCcchhhhccccC--CCH----HHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 4577899999999955311 1111122222 112 334466666666654432223 23565457888888888
Q ss_pred HHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 179 ILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 179 l~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
...+.|++.|.|-+.. +.+...|+.+.+.|..+.|-|.+|-- .....+.+++-++.++++||+.
T Consensus 105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~-------------p~~~~~~~~~~a~~l~~~Gad~ 171 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTS-------------PVHTLQTWVDLAKQLEDMGVDS 171 (593)
T ss_pred HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeC-------------CccCHHHHHHHHHHHHHcCCCE
Confidence 8778999999998763 34557788888899887765554310 0112456778888999999999
Q ss_pred EEec-C--C--C---HHHHHHHHhhcCCCEEEE
Q 016682 256 VVLE-C--V--P---PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 256 IvlE-~--V--p---~ela~~It~~l~IPtIGI 280 (384)
|.+- . + | .++.+.|.+++++| |+|
T Consensus 172 i~i~Dt~G~l~P~~~~~lv~~lk~~~~~p-i~~ 203 (593)
T PRK14040 172 LCIKDMAGLLKPYAAYELVSRIKKRVDVP-LHL 203 (593)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhcCCe-EEE
Confidence 9986 2 2 5 35666666777777 344
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.86 E-value=0.22 Score=52.66 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=45.9
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
-+...+..+-++|+|+|.+ |+. +|++ ..+-+|+ +.|+..-+..+|++| +-.+.+.+ ..+
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~-D~a----~g~~----~~~~~~i---~~i~~~~~~~~vi~g-----~~~t~~~~----~~l 283 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVI-DTA----HGHQ----VKMISAI---KAVRALDLGVPIVAG-----NVVSAEGV----RDL 283 (475)
T ss_pred cHHHHHHHHHHhCCCEEEE-eCC----CCCc----HHHHHHH---HHHHHHCCCCeEEEe-----ccCCHHHH----HHH
Confidence 4455666777889999877 332 4665 3445555 455555455557773 22466666 456
Q ss_pred HHHhCCCEEEeCCC
Q 016682 180 LKEGGMDAIKLEGG 193 (384)
Q Consensus 180 ~keaGAdaVKLEgg 193 (384)
+ ++|||+||+-+|
T Consensus 284 ~-~~G~d~i~vg~g 296 (475)
T TIGR01303 284 L-EAGANIIKVGVG 296 (475)
T ss_pred H-HhCCCEEEECCc
Confidence 6 699999998766
No 89
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.84 E-value=0.29 Score=51.85 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=101.5
Q ss_pred ChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
-.+-|..++++|++.|=+ |-+-=-+++++-...+ -|.+...+....-++.-.+.--.-.-+|..-|++.++..++.
T Consensus 37 ~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edp---werlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 37 MLPVLTILDKIGYYSLECWGGATFDACIRFLNEDP---WERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH---HHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 345678899999999954 4333345567666544 344444443333233222232212235655577888888888
Q ss_pred HHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+.|+|.+.+=+.. +.+...|+++.+.|.-|.+-|+.|-. +....+-+++-++.++++||+.|
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s-------------p~~t~~y~~~~a~~l~~~Gad~I 180 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS-------------PVHTLNYYLSLVKELVEMGADSI 180 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC-------------CcCcHHHHHHHHHHHHHcCCCEE
Confidence 888999999998763 55667788888999887765554321 11133567778889999999999
Q ss_pred Eec---CC--C---HHHHHHHHhhcCCC
Q 016682 257 VLE---CV--P---PPVAAAATSALQIP 276 (384)
Q Consensus 257 vlE---~V--p---~ela~~It~~l~IP 276 (384)
.+- ++ | .++.+.|.+.+++|
T Consensus 181 ~IkDtaG~l~P~~v~~Lv~alk~~~~~p 208 (468)
T PRK12581 181 CIKDMAGILTPKAAKELVSGIKAMTNLP 208 (468)
T ss_pred EECCCCCCcCHHHHHHHHHHHHhccCCe
Confidence 987 22 4 34555555555666
No 90
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.84 E-value=0.27 Score=49.17 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=93.4
Q ss_pred cEEEEecCCh----HHHHHHHHcCCCEE-E-ecchhhh-hhccCCCCcCCCHHHHHHHHHHHHcccC--CCcEEEeCCCC
Q 016682 93 PITMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFG 163 (384)
Q Consensus 93 ~I~mlTAyD~----~sA~iae~AGiD~I-l-VGDSl~m-v~lG~~dT~~VtldeMl~h~raV~Rga~--~~~vvaDmPfg 163 (384)
.++-+..-|. ..|+.++++|+|.| + .|=.... +-.|..+.+.-..+-+...+++|++.++ .| |.+=+.-
T Consensus 65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~p-VsvKiR~- 142 (312)
T PRK10550 65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VTVKVRL- 142 (312)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcc-eEEEEEC-
Confidence 3455556663 35778899999999 3 4421111 2344444455566777788888888774 45 6666654
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------cc-hHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCC
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PS-RITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------~e-~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
++ .+.+++++.+.. ++++|++.|.+-+.+ .. ..+.|+.+.+ .+|||+|. ||. .|
T Consensus 143 g~-~~~~~~~~~a~~-l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~n-----------GdI----~t 205 (312)
T PRK10550 143 GW-DSGERKFEIADA-VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIAN-----------GEI----WD 205 (312)
T ss_pred CC-CCchHHHHHHHH-HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEe-----------CCc----CC
Confidence 44 244556666655 568999999997742 10 2355666665 47999975 432 35
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHH
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAA 269 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~I 269 (384)
.+++++++ ++.|||+|.+= .+ .+.+.+.|
T Consensus 206 ~~da~~~l------~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 206 WQSAQQCM------AITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred HHHHHHHH------hccCCCEEEEcHHhHhCcHHHHHh
Confidence 55555544 45799998864 33 35555555
No 91
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.84 E-value=2.3 Score=42.47 Aligned_cols=183 Identities=11% Similarity=0.162 Sum_probs=111.4
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~ 153 (384)
+|..++ +..++++--+-..++|+..+++ .+|+.+.++|+-..-...- ...++.+...++..++.++.
T Consensus 4 v~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~--------~~g~~~~~~~~~~~A~~~~v 75 (283)
T PRK07998 4 VNGRILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQ--------LSGYDYIYEIVKRHADKMDV 75 (283)
T ss_pred CcHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHh--------hCCHHHHHHHHHHHHHHCCC
Confidence 455554 4456677789999999999985 4577799999854222222 23356667778888888887
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCccccc-cc
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAIS-VL 225 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~-~l 225 (384)
| |+.-+..| .+.+.. .+.+ ++|.+.|.+-|.. +|..+..+.++ ..|++|=+=||-...... ..
T Consensus 76 P-V~lHLDH~---~~~e~i----~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~ 146 (283)
T PRK07998 76 P-VSLHLDHG---KTFEDV----KQAV-RAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHV 146 (283)
T ss_pred C-EEEECcCC---CCHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccc
Confidence 7 66666652 244444 3456 5899999996542 33444444444 589999555554432111 00
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe-----------cCCCHHHHHHHHhhcCCCEEEEcCCCCC
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVL-----------ECVPPPVAAAATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl-----------E~Vp~ela~~It~~l~IPtIGIGAG~~c 286 (384)
.+ ...-.+.+++.+ -+++-|+|+|=+ +.+.-++.++|.+.+++|+. +-.|++.
T Consensus 147 ~~-~~~~T~pe~a~~------Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLV-lHGgSG~ 210 (283)
T PRK07998 147 SE-ADCKTEPEKVKD------FVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLV-IHGGSGI 210 (283)
T ss_pred cc-ccccCCHHHHHH------HHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEE-EeCCCCC
Confidence 01 011124444433 344678887654 23446899999999999965 5444443
No 92
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.83 E-value=0.85 Score=49.77 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=104.8
Q ss_pred HHHHHHHHcCCCEEEecchhhh-hhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--EeCCCCCCcCCHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~m-v~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--aDmPfgsY~~s~e~av~nA~rl 179 (384)
+-|..++++|+..|=++-+... +.++|-...+ .|++...|....-++.-++. .+++ +|..-+++.++.-++.
T Consensus 30 ~ia~~~d~~g~~siE~~gGatfd~~~rfl~edp---werl~~~r~~~pnt~lqmL~Rg~N~v--Gy~~~~d~vv~~~v~~ 104 (596)
T PRK14042 30 PICNKMDDVGFWAMEVWGGATFDACLRFLKEDP---WSRLRQLRQALPNTQLSMLLRGQNLL--GYRNYADDVVRAFVKL 104 (596)
T ss_pred HHHHHHHhcCCCEEEeeCCcccceeecccCCCH---HHHHHHHHHhCCCCceEEEecccccc--ccccCChHHHHHHHHH
Confidence 3567789999999955433333 4566655433 45555444443333333333 4455 6666688899988888
Q ss_pred HHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+.|+|.+.+=|.. +.+...|+++.++|.-+.|-|=+|=.. --| .+.+++-++.++++||+.|
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp----------~~t---~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSP----------VHT---LDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCC----------CCC---HHHHHHHHHHHHHcCCCEE
Confidence 778999999998763 556678889999998887764444311 112 4577888999999999999
Q ss_pred Eec---CC--C---HHHHHHHHhhcCCCE
Q 016682 257 VLE---CV--P---PPVAAAATSALQIPT 277 (384)
Q Consensus 257 vlE---~V--p---~ela~~It~~l~IPt 277 (384)
.+- ++ | .++.+.|.+++++|+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi 200 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPV 200 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEE
Confidence 986 22 5 466667777777774
No 93
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.83 E-value=0.19 Score=49.37 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=71.8
Q ss_pred EeCCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCccccccc
Q 016682 158 GDLPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 158 aDmPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~l 225 (384)
.=+||- ..+.|.+..-+.+-.++ +.|+++|-+=|.+ +|....++..++ ..+||+.|+|.
T Consensus 13 ~vTPf~~dg~iD~~~l~~li~~l~-~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-------- 83 (296)
T TIGR03249 13 PVTPFDADGSFDEAAYRENIEWLL-GYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-------- 83 (296)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHH-hcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--------
Confidence 335662 23456666666666666 6999999997763 566666766665 45899877441
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhcCCCEEEEc
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l~IPtIGIG 281 (384)
..++.++.++..+++||+++++=.. + +++ -+.|++++++|++..-
T Consensus 84 -----------~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 84 -----------NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred -----------cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 1357788999999999999987432 1 233 3567888999999775
No 94
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.79 E-value=0.12 Score=51.21 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=72.6
Q ss_pred CCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCC
Q 016682 160 LPFGT-YESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfgs-Y~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgG 227 (384)
+||-. .+.|.+..-+.+.+++ +.|+++|-+=|.+ +|..+.++..++ -.+||+.++|
T Consensus 14 TPF~~dg~vD~~a~~~lv~~li-~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g----------- 81 (299)
T COG0329 14 TPFDEDGSVDEEALRRLVEFLI-AAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG----------- 81 (299)
T ss_pred cCCCCCCCcCHHHHHHHHHHHH-HcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-----------
Confidence 45643 3456665656665666 7999999998863 666677777765 3588886643
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--H---HHHHHHHhhcCCCEEEEc
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--P---PVAAAATSALQIPTIGIG 281 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~---ela~~It~~l~IPtIGIG 281 (384)
....++.++.++..+++|+|+|++=.. | + +-.+.|.+++++|+|-.-
T Consensus 82 -------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN 137 (299)
T COG0329 82 -------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYN 137 (299)
T ss_pred -------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 113468899999999999999987643 2 3 334678899999988654
No 95
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.77 E-value=0.52 Score=40.96 Aligned_cols=144 Identities=24% Similarity=0.245 Sum_probs=80.6
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCc-CCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~-~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
...++.+.+.|++++-++..... +... .... ...+.+++..+.| +++++-...+ .+.+.-..+.+
T Consensus 15 ~~~~~~~~~~G~~~v~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~a~~~ 80 (200)
T cd04722 15 VELAKAAAEAGADAIIVGTRSSD-----PEEAETDDK----EVLKEVAAETDLP-LGVQLAINDA----AAAVDIAAAAA 80 (200)
T ss_pred HHHHHHHHcCCCCEEEEeeEEEC-----cccCCCccc----cHHHHHHhhcCCc-EEEEEccCCc----hhhhhHHHHHH
Confidence 44566677889999988753322 1111 1110 2234444555666 4444433222 23222223455
Q ss_pred HHhCCCEEEeCCCcc----chHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc
Q 016682 181 KEGGMDAIKLEGGSP----SRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF 254 (384)
Q Consensus 181 keaGAdaVKLEgg~~----e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf 254 (384)
++.|+|+|.|-+... ...+.++++.+. +++|..= +++. +... + + .++++|++
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~--~~~~-------------~~~~--~----~-~~~~~g~d 138 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVK--LSPT-------------GELA--A----A-AAEEAGVD 138 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEE--ECCC-------------Cccc--h----h-hHHHcCCC
Confidence 689999999977621 145677777776 7777631 1110 1000 0 0 17889999
Q ss_pred EEEecCCCH------------HHHHHHHhhcCCCEEEEc
Q 016682 255 SVVLECVPP------------PVAAAATSALQIPTIGIG 281 (384)
Q Consensus 255 ~IvlE~Vp~------------ela~~It~~l~IPtIGIG 281 (384)
.|.+..... ...+.+.+..++|++..|
T Consensus 139 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~G 177 (200)
T cd04722 139 EVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGG 177 (200)
T ss_pred EEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEEC
Confidence 999875421 445666677899998765
No 96
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.76 E-value=0.17 Score=49.34 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCCccccCCC
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
+.|.+..-+++.+++ +.|+++|-+=|.. +|..+.++.+++ .++||+.|+|-
T Consensus 18 ~iD~~~l~~~i~~l~-~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----------------- 79 (292)
T PRK03170 18 SVDFAALRKLVDYLI-ANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS----------------- 79 (292)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-----------------
Confidence 356666666666666 6899999987753 566666666665 35888876331
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHHH---HHHHhhcCCCEEEEcC
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLECV----P--PPVA---AAATSALQIPTIGIGA 282 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~ela---~~It~~l~IPtIGIGA 282 (384)
...++.++.|+..+++||+++++-.. + .++. +.|++++++|++-.-.
T Consensus 80 -~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 80 -NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred -chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 13468899999999999999987432 1 3443 4577888999996643
No 97
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.13 Score=49.44 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=77.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
++.+|.+.++....+.|--|-..-.+..+.++|||+|-+ ++.||-+....+-+.=..+.+.+++ + ..+|++-
T Consensus 115 ~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGT------TLsGYT~~~~~~~~pDf~lvk~l~~-~-~~~vIAE 186 (229)
T COG3010 115 DLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGT------TLSGYTGYTEKPTEPDFQLVKQLSD-A-GCRVIAE 186 (229)
T ss_pred hHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEec------ccccccCCCCCCCCCcHHHHHHHHh-C-CCeEEee
Confidence 888888888888899999999999999999999999855 3678888555555555677788877 4 4558887
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
|-| .||+++ .+.+ +.||++|-+-+.
T Consensus 187 ---Gr~-~tP~~A----k~a~-~~Ga~aVvVGsA 211 (229)
T COG3010 187 ---GRY-NTPEQA----KKAI-EIGADAVVVGSA 211 (229)
T ss_pred ---CCC-CCHHHH----HHHH-HhCCeEEEECcc
Confidence 778 699998 5677 799999988443
No 98
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.73 E-value=1.9 Score=46.20 Aligned_cols=141 Identities=21% Similarity=0.234 Sum_probs=93.7
Q ss_pred HHHHHHhhhCCCcEEEEe---------cCC----hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH
Q 016682 81 LTHLRQKHKNGEPITMVT---------AYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlT---------AyD----~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV 147 (384)
+..|++.- .+.+|.|+. -|. -..-+.+-++|+|++=+.|++.-+ +-|....++|
T Consensus 67 lr~lr~~~-~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~v 133 (499)
T PRK12330 67 LRTFRKLM-PNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAV 133 (499)
T ss_pred HHHHHHhC-CCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHH
Confidence 55566544 456788776 232 224566678899999999988433 7777788888
Q ss_pred HcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc---CCceeeeccCC
Q 016682 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA---GIAVMGHVGLT 218 (384)
Q Consensus 148 ~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a---GIPV~gHiGLt 218 (384)
.+.-.. +-+.+-| +|...+++..++.|.++. +.||+.|.|-|-. .+..+.|++|.++ ++|+--|
T Consensus 134 k~ag~~--~~~~i~yt~sp~~t~e~~~~~a~~l~-~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H---- 206 (499)
T PRK12330 134 KKVGKH--AQGTICYTVSPIHTVEGFVEQAKRLL-DMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLH---- 206 (499)
T ss_pred HHhCCe--EEEEEEEecCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEE----
Confidence 765442 2222222 233458898888888877 7999999999852 5667888888875 5888887
Q ss_pred cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 219 PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+..| . .+.-..+-.+|||+.|
T Consensus 207 --~Hnt~G-l------------A~An~laAieAGad~v 229 (499)
T PRK12330 207 --CHSTTG-V------------TLVSLMKAIEAGVDVV 229 (499)
T ss_pred --eCCCCC-c------------HHHHHHHHHHcCCCEE
Confidence 223332 1 2334556678999854
No 99
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.71 E-value=0.21 Score=48.27 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCC
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
+.|.+...+++.+++ +.|+++|-+=|.. +|..+.++.+++. ++||+.++|=+
T Consensus 17 ~iD~~~~~~~i~~l~-~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~---------------- 79 (284)
T cd00950 17 SVDFDALERLIEFQI-ENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSN---------------- 79 (284)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCc----------------
Confidence 457777777777777 6999999987753 5666666666653 57887664311
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC---C---HHH---HHHHHhhcCCCEEEE
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLECV---P---PPV---AAAATSALQIPTIGI 280 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE~V---p---~el---a~~It~~l~IPtIGI 280 (384)
..++.++.|+..+++||++|++-.. + .++ .+.|++++++|++-.
T Consensus 80 --~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 80 --NTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred --cHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 2357799999999999999887633 1 333 456788889999855
No 100
>PRK07475 hypothetical protein; Provisional
Probab=95.71 E-value=0.38 Score=46.34 Aligned_cols=41 Identities=41% Similarity=0.532 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHH--cCCcEEEecCCC-HHHHHHHHhhcCCCEEE
Q 016682 239 VKVVETALALQE--VGCFSVVLECVP-PPVAAAATSALQIPTIG 279 (384)
Q Consensus 239 ~~ll~rAkAlee--AGAf~IvlE~Vp-~ela~~It~~l~IPtIG 279 (384)
+++.+-++.+.+ -||++|++||.. +.+++.+.+.+++|++-
T Consensus 181 ~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViD 224 (245)
T PRK07475 181 QEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFD 224 (245)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEe
Confidence 467777777764 499999999986 56667888889999983
No 101
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.70 E-value=0.13 Score=50.64 Aligned_cols=96 Identities=23% Similarity=0.362 Sum_probs=67.2
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE-----E--EeCCCCCCc---CC---HH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-----V--GDLPFGTYE---SS---TN 170 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v-----v--aDmPfgsY~---~s---~e 170 (384)
..++++++|++.|-.-|+ ++|....+++++. ..|++ . .|.-+|+|- .+ .+
T Consensus 99 a~r~~~~aGa~aVkiEdg----------------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~ 161 (264)
T PRK00311 99 AGRLMKEAGAHAVKLEGG----------------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAE 161 (264)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHH
Confidence 467888899999988764 4888888888753 55632 1 232335552 12 44
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCccc
Q 016682 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQA 221 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~ 221 (384)
++++-|..+. ++||++|-||+= ++ +.+++++++ .||++| ||=-|..
T Consensus 162 ~~i~ra~a~~-eAGA~~i~lE~v-~~--~~~~~i~~~l~iP~ig-iGaG~~~ 208 (264)
T PRK00311 162 KLLEDAKALE-EAGAFALVLECV-PA--ELAKEITEALSIPTIG-IGAGPDC 208 (264)
T ss_pred HHHHHHHHHH-HCCCCEEEEcCC-CH--HHHHHHHHhCCCCEEE-eccCCCC
Confidence 7788776655 899999999996 33 677888764 899999 7766643
No 102
>PLN02591 tryptophan synthase
Probab=95.68 E-value=0.84 Score=44.56 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=67.8
Q ss_pred HHHHHHcCCCEEEec----chhh-----hhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCH--HHHH
Q 016682 105 AVHLDSAGIDICLVG----DSAA-----MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST--NQAV 173 (384)
Q Consensus 105 A~iae~AGiD~IlVG----DSl~-----mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~--e~av 173 (384)
++.+.++|+|+|=.| |.++ ....-..=...+|+++.+..++.+++..+.|++ +++| .|+ .-.+
T Consensus 22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i-----lm~Y-~N~i~~~G~ 95 (250)
T PLN02591 22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV-----LFTY-YNPILKRGI 95 (250)
T ss_pred HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE-----EEec-ccHHHHhHH
Confidence 455678899999655 2111 111111113457888999999999877666744 3567 354 2255
Q ss_pred HHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 174 DTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 174 ~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
++-.+..+++|+++|-|=|=. +|..+.++++.+.||..+
T Consensus 96 ~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEE
Confidence 555667789999999998843 567788888888998765
No 103
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.67 E-value=0.36 Score=48.54 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=90.2
Q ss_pred EEEEecCCh----HHHHHHHHcCCCEE-E-ecchhhhh-hccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCCCCC
Q 016682 94 ITMVTAYDY----PSAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTY 165 (384)
Q Consensus 94 I~mlTAyD~----~sA~iae~AGiD~I-l-VGDSl~mv-~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPfgsY 165 (384)
++-+..-|. -.|+++.++|+|.| + .|-....+ --||-+...-..+-+...+++|++.++.|+.+ .=+.+-..
T Consensus 68 ~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~ 147 (333)
T PRK11815 68 ALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ 147 (333)
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC
Confidence 344555554 34778888999999 4 45333332 23344444556677778888888877777443 11222122
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCc------c---------chHHHHHHHHHc--CCceeeeccCCcccccccCCc
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS------P---------SRITAARGIVEA--GIAVMGHVGLTPQAISVLGGF 228 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg~------~---------e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGf 228 (384)
.+.+++++.+.++ +++|++++-+-+.. . -..+.|+.+.++ .|||++. ||.
T Consensus 148 -~t~~~~~~~~~~l-~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~n-----------GgI 214 (333)
T PRK11815 148 -DSYEFLCDFVDTV-AEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEIN-----------GGI 214 (333)
T ss_pred -cCHHHHHHHHHHH-HHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEE-----------CCc
Confidence 2445566555454 57999999987531 0 125677777774 6999864 443
Q ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEec-C-C-CHHHHHHHHhh
Q 016682 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLE-C-V-PPPVAAAATSA 272 (384)
Q Consensus 229 rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE-~-V-p~ela~~It~~ 272 (384)
+|.+++.++++ |||+|.+= + + .+.+.+.+.+.
T Consensus 215 ----~s~eda~~~l~--------~aDgVmIGRa~l~nP~~~~~~~~~ 249 (333)
T PRK11815 215 ----KTLEEAKEHLQ--------HVDGVMIGRAAYHNPYLLAEVDRE 249 (333)
T ss_pred ----CCHHHHHHHHh--------cCCEEEEcHHHHhCCHHHHHHHHH
Confidence 35556666553 58887753 2 2 24455555443
No 104
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.66 E-value=0.21 Score=50.20 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=71.6
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHc-CCceeeecc
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEA-GIAVMGHVG 216 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~a-GIPV~gHiG 216 (384)
++.-+- +.++++..+.|.. +++.|+|+|.|--|. +...+.|++++++ ++||..=|.
T Consensus 57 ~~vQl~----g~~p~~~~~aA~~-~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR 131 (318)
T TIGR00742 57 VALQLG----GSDPNDLAKCAKI-AEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHR 131 (318)
T ss_pred EEEEEc----cCCHHHHHHHHHH-HHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 566652 2478887776654 557899999987651 3345667777764 788753221
Q ss_pred CCcccccccCCccccCCC-HHHHHHHHHHHHHHHHcCCcEEEecCCC------------------HHHHHHHHhhc-CCC
Q 016682 217 LTPQAISVLGGFRPQGKN-VTSAVKVVETALALQEVGCFSVVLECVP------------------PPVAAAATSAL-QIP 276 (384)
Q Consensus 217 LtPQ~~~~lgGfrvqGrt-~~~a~~ll~rAkAleeAGAf~IvlE~Vp------------------~ela~~It~~l-~IP 276 (384)
.|-+ .+..+.+++-++.++++|+++|-+-+=. -+.++++.+.+ +||
T Consensus 132 --------------~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ip 197 (318)
T TIGR00742 132 --------------IGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLT 197 (318)
T ss_pred --------------cCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCc
Confidence 1212 1344677888999999999999877632 14567788888 799
Q ss_pred EEEEc
Q 016682 277 TIGIG 281 (384)
Q Consensus 277 tIGIG 281 (384)
+||-|
T Consensus 198 Vi~NG 202 (318)
T TIGR00742 198 IEING 202 (318)
T ss_pred EEEEC
Confidence 98654
No 105
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=95.64 E-value=0.53 Score=48.61 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=88.2
Q ss_pred HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 016682 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (384)
Q Consensus 107 iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAd 186 (384)
.+.+.|+|+|=+|. + ....+-...++.+++..+.++++.|+-+... +..- .++..++||+
T Consensus 24 ~~~~~Gv~~ie~g~---------p----~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~---g~~~----v~~a~~aGAd 83 (430)
T PRK07028 24 EAVAGGADWIEAGT---------P----LIKSEGMNAIRTLRKNFPDHTIVADMKTMDT---GAIE----VEMAAKAGAD 83 (430)
T ss_pred HHHhcCCcEEEeCC---------H----HHHHhhHHHHHHHHHHCCCCEEEEEeeeccc---hHHH----HHHHHHcCCC
Confidence 33458999996542 1 1123346777888887778899999877544 2222 2344579999
Q ss_pred EEEeCCCcc--chHHHHHHHHHcCCceeeecc-CCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC--
Q 016682 187 AIKLEGGSP--SRITAARGIVEAGIAVMGHVG-LTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-- 261 (384)
Q Consensus 187 aVKLEgg~~--e~~~~I~alv~aGIPV~gHiG-LtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-- 261 (384)
+|.+-|... ...+.++.+.+.|++++. | ++|. | -+++++.+.+.|++.|.+...
T Consensus 84 gV~v~g~~~~~~~~~~i~~a~~~G~~~~~--g~~s~~-------------t------~~e~~~~a~~~GaD~I~~~pg~~ 142 (430)
T PRK07028 84 IVCILGLADDSTIEDAVRAARKYGVRLMA--DLINVP-------------D------PVKRAVELEELGVDYINVHVGID 142 (430)
T ss_pred EEEEecCCChHHHHHHHHHHHHcCCEEEE--EecCCC-------------C------HHHHHHHHHhcCCCEEEEEeccc
Confidence 999855422 235677888889988762 2 2332 1 134567778899999975521
Q ss_pred -------CHHHHHHHHhhcCCCEEEEc
Q 016682 262 -------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 262 -------p~ela~~It~~l~IPtIGIG 281 (384)
+.+..+++.+.+++|+.-+|
T Consensus 143 ~~~~~~~~~~~l~~l~~~~~iPI~a~G 169 (430)
T PRK07028 143 QQMLGKDPLELLKEVSEEVSIPIAVAG 169 (430)
T ss_pred hhhcCCChHHHHHHHHhhCCCcEEEEC
Confidence 14677888888899998777
No 106
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.64 E-value=0.086 Score=56.13 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=66.3
Q ss_pred HHHHHHhhhC--CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCc-CCCHHHHHHHHHHHHcccCCCcEE
Q 016682 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL-PITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 81 ~~~lr~~k~~--g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~-~VtldeMl~h~raV~Rga~~~~vv 157 (384)
+..++.+|+. +-+|++=++=+..-|+.+.++|+|+|.||-.-|........+. ..+...-++.+..+++..+.| |+
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vp-VI 355 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVP-VI 355 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCe-EE
Confidence 3455555543 3455555899999999999999999998754443333333221 112222355567777766666 99
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
+| |++ .++.++ .+.+ ..||++|.+
T Consensus 356 ad---GGI-~~~~di----~kAl-a~GA~~V~v 379 (505)
T PLN02274 356 AD---GGI-SNSGHI----VKAL-TLGASTVMM 379 (505)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEE
Confidence 99 677 477777 4577 589999999
No 107
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.64 E-value=0.15 Score=51.19 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=71.5
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHc-CCceeeec
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEA-GIAVMGHV 215 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~a-GIPV~gHi 215 (384)
.+++-+- + .++++..+.|.+ +++.|+|+|.|-.|. +...+.|++++++ ++||-.-+
T Consensus 66 p~~vQl~--g--~~p~~~~~aA~~-~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKi 140 (333)
T PRK11815 66 PVALQLG--G--SDPADLAEAAKL-AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKH 140 (333)
T ss_pred cEEEEEe--C--CCHHHHHHHHHH-HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3667762 2 478888777655 457999999887551 3344666676653 77776432
Q ss_pred cCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------------------CHHHHHHHHhhc-CCC
Q 016682 216 GLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------------------PPPVAAAATSAL-QIP 276 (384)
Q Consensus 216 GLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------------------p~ela~~It~~l-~IP 276 (384)
+ +| + .+ .+...++++-++.++++|+++|.+-+- .-+.+++|.+.+ +||
T Consensus 141 -----R---~g-~--~~--~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iP 207 (333)
T PRK11815 141 -----R---IG-I--DD--QDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLT 207 (333)
T ss_pred -----E---ee-e--CC--CcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCe
Confidence 1 11 1 11 112346778889999999999987531 146778888886 899
Q ss_pred EEEEc
Q 016682 277 TIGIG 281 (384)
Q Consensus 277 tIGIG 281 (384)
+|+-|
T Consensus 208 VI~nG 212 (333)
T PRK11815 208 IEING 212 (333)
T ss_pred EEEEC
Confidence 97665
No 108
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.62 E-value=0.17 Score=50.68 Aligned_cols=152 Identities=25% Similarity=0.325 Sum_probs=86.1
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCC-cCCHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRI 179 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY-~~s~e~av~nA~rl 179 (384)
...-|+.+.++|+-+ .+|+--. |+-+ .|...-.+.|+...+..++++++.-... ..++++.. .+..+
T Consensus 71 n~~La~~a~~~g~~~-~~Gs~~~----~~~~------~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~-~~i~~ 138 (326)
T cd02811 71 NRNLAEAAEELGIAM-GVGSQRA----ALED------PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR-RAVEM 138 (326)
T ss_pred HHHHHHHHHHcCCCe-EecCchh----hccC------hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH-HHHHh
Confidence 455677888888653 4553321 2222 2233444667777774446666642111 11555543 33444
Q ss_pred HHHhCCCEEEe----C-----CCccc---hHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 180 LKEGGMDAIKL----E-----GGSPS---RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 180 ~keaGAdaVKL----E-----gg~~e---~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
+ ++.+..|++ | +. .+ ..+.|+.+++. .+||+-. ..|+ |.| .+.|+
T Consensus 139 ~-~adalel~l~~~q~~~~~~~~-~df~~~~~~i~~l~~~~~vPVivK----------~~g~---g~s-------~~~a~ 196 (326)
T cd02811 139 I-EADALAIHLNPLQEAVQPEGD-RDFRGWLERIEELVKALSVPVIVK----------EVGF---GIS-------RETAK 196 (326)
T ss_pred c-CCCcEEEeCcchHhhcCCCCC-cCHHHHHHHHHHHHHhcCCCEEEE----------ecCC---CCC-------HHHHH
Confidence 4 244444444 1 22 22 23789999987 9999843 1222 333 47889
Q ss_pred HHHHcCCcEEEecC-----------------------------CC-HHHHHHHHhhc-CCCEEEEcCCCCCCc
Q 016682 247 ALQEVGCFSVVLEC-----------------------------VP-PPVAAAATSAL-QIPTIGIGAGPFCSG 288 (384)
Q Consensus 247 AleeAGAf~IvlE~-----------------------------Vp-~ela~~It~~l-~IPtIGIGAG~~cDG 288 (384)
.++++|+++|++-+ +| .+.+..+.+.+ ++|+|. +|.-.+|
T Consensus 197 ~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIia--sGGIr~~ 267 (326)
T cd02811 197 RLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIA--SGGIRNG 267 (326)
T ss_pred HHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEE--ECCCCCH
Confidence 99999999999643 33 35566666777 899775 4443444
No 109
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=95.61 E-value=0.27 Score=53.42 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=90.2
Q ss_pred HcCCCEEEecchhhh-----hhccCCCCcCCCHHHHHHHHHHHHccc--CCCcEEEeC-CCCCCc----CCHHHHHHH--
Q 016682 110 SAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAVARGA--KRPLLVGDL-PFGTYE----SSTNQAVDT-- 175 (384)
Q Consensus 110 ~AGiD~IlVGDSl~m-----v~lG~~dT~~VtldeMl~h~raV~Rga--~~~~vvaDm-PfgsY~----~s~e~av~n-- 175 (384)
+||.|+|.+- +.+. ..+|+. -..+++...+-.++|.+ ...+|.+++ |+|.|+ .+.+++.+.
T Consensus 54 ~AGAdvi~Tn-Ty~as~~~l~~~g~~----~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~ 128 (612)
T PRK08645 54 EAGADVIQTN-TFGANRIKLKRYGLE----DKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFR 128 (612)
T ss_pred HhCCCEEecC-cccccHHHHHhcCch----HHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHH
Confidence 6788877543 2222 223443 22566665555544443 247788999 666651 244544332
Q ss_pred -HHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcC-CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHc
Q 016682 176 -AVRILKEGGMDAIKLEGGS--PSRITAARGIVEAG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (384)
Q Consensus 176 -A~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aG-IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA 251 (384)
-.+.+.++|+|.+-+|--. .|....++++.+.+ +||+. .++.. .+|...-|.+-+++.+.+ ++.
T Consensus 129 ~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~~~p~~~--Sf~~~----~~g~l~~G~~~~~~~~~~------~~~ 196 (612)
T PRK08645 129 EQIDALLEEGVDGLLLETFYDLEELLLALEAAREKTDLPIIA--QVAFH----EDGVTQNGTSLEEALKEL------VAA 196 (612)
T ss_pred HHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhCCCcEEE--EEEEC----CCCeeCCCCCHHHHHHHH------HhC
Confidence 2445557999999999752 45666677777676 89874 34432 234444566544443333 357
Q ss_pred CCcEEEecCCC-HHHH----HHHHhhcCCCEEEE
Q 016682 252 GCFSVVLECVP-PPVA----AAATSALQIPTIGI 280 (384)
Q Consensus 252 GAf~IvlE~Vp-~ela----~~It~~l~IPtIGI 280 (384)
|+++|-+-|.. ++.+ +.+...+++|++..
T Consensus 197 ~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vy 230 (612)
T PRK08645 197 GADVVGLNCGLGPYHMLEALERIPIPENAPLSAY 230 (612)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHhccCceEEEE
Confidence 89999999983 4333 33344457787766
No 110
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.60 E-value=0.26 Score=52.57 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=104.9
Q ss_pred HHHHhhhCCCcE-EEEecCCh-HHHHHHHHcCCCEEEecchh-hhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--
Q 016682 83 HLRQKHKNGEPI-TMVTAYDY-PSAVHLDSAGIDICLVGDSA-AMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-- 157 (384)
Q Consensus 83 ~lr~~k~~g~~I-~mlTAyD~-~sA~iae~AGiD~IlVGDSl-~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-- 157 (384)
+||+-+++ ++ +-++..|. +-|..++++|++.|=+|-.. =-+++.+-+..+ -+..+.+++..++..+.
T Consensus 11 TLRDG~QS--l~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edp------werlr~lr~~~~nt~lqmL 82 (499)
T PRK12330 11 ALRDAHQS--LMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDP------WERLRTFRKLMPNSRLQML 82 (499)
T ss_pred Cccchhhc--ccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCH------HHHHHHHHHhCCCCeEEEE
Confidence 35555543 22 33333333 35778999999999665111 112233333222 23345565555554343
Q ss_pred ---EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCcccc
Q 016682 158 ---GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 158 ---aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
.+++ +|..-++++++.-++...+.|+|.+.|=+.. +.+...|+++.++|.-+.+-|.+|= +
T Consensus 83 ~Rg~N~v--Gy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~-------s---- 149 (499)
T PRK12330 83 LRGQNLL--GYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTV-------S---- 149 (499)
T ss_pred EcccccC--CccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEec-------C----
Confidence 2343 5766678888888877668999999998874 4455677788888877666554421 0
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEec---CC--C---HHHHHHHHhhc--CCCE
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLE---CV--P---PPVAAAATSAL--QIPT 277 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE---~V--p---~ela~~It~~l--~IPt 277 (384)
.....+.+++-|+.++++||+.|-+- ++ | .++.+.|.+++ ++|+
T Consensus 150 --p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI 203 (499)
T PRK12330 150 --PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRI 203 (499)
T ss_pred --CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeE
Confidence 01134678888999999999999886 22 4 35556666666 4663
No 111
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.60 E-value=0.29 Score=46.84 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
..|+...+.|+|-|.+=|-=+. .|.++ .+...+.|++.+..| |.++ |+. .|.|++ .+++ +
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~--------n~~~i~~i~~~~~~p-v~vg---GGi-rs~edv----~~~l-~ 95 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGS--------NRELLAEVVGKLDVK-VELS---GGI-RDDESL----EAAL-A 95 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCc--------cHHHHHHHHHHcCCC-EEEc---CCC-CCHHHH----HHHH-H
Confidence 3577778899999976663332 24332 234456666666666 5555 677 477777 5677 6
Q ss_pred hCCCEEEeCCCc-cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 016682 183 GGMDAIKLEGGS-PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 183 aGAdaVKLEgg~-~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~ 260 (384)
.||+-|-+ |.. -+..+.++.+.+. +=.+.- +|.-. -+.++..|-+. .....++-++.++++|+..|++=.
T Consensus 96 ~Ga~kvvi-Gs~~l~~p~l~~~i~~~~~~~i~v--sld~~----~~~v~~~Gw~~-~~~~~~~~~~~l~~~G~~~iiv~~ 167 (241)
T PRK14024 96 TGCARVNI-GTAALENPEWCARVIAEHGDRVAV--GLDVR----GHTLAARGWTR-DGGDLWEVLERLDSAGCSRYVVTD 167 (241)
T ss_pred CCCCEEEE-CchHhCCHHHHHHHHHHhhhhEEE--EEEEe----ccEeccCCeee-cCccHHHHHHHHHhcCCCEEEEEe
Confidence 89998877 331 1223445555432 101110 01000 01122233222 225678888999999999999877
Q ss_pred CC---------HHHHHHHHhhcCCCEEE
Q 016682 261 VP---------PPVAAAATSALQIPTIG 279 (384)
Q Consensus 261 Vp---------~ela~~It~~l~IPtIG 279 (384)
+. -++++++.+.+++|+|.
T Consensus 168 ~~~~g~~~G~d~~~i~~i~~~~~ipvia 195 (241)
T PRK14024 168 VTKDGTLTGPNLELLREVCARTDAPVVA 195 (241)
T ss_pred ecCCCCccCCCHHHHHHHHhhCCCCEEE
Confidence 74 48889999999999985
No 112
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.60 E-value=0.57 Score=45.59 Aligned_cols=149 Identities=16% Similarity=0.068 Sum_probs=87.5
Q ss_pred hHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
.-.|+..+++|+++|.| .| ++-..=+ +...++|++.++.|++.-| |-.++.|+ ...
T Consensus 73 ~~~A~~~~~~GA~aisvlte---------~~~f~g~----~~~l~~v~~~v~iPvl~kd-----fi~~~~qi-----~~a 129 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTD---------ERFFQGS----LEYLRAARAAVSLPVLRKD-----FIIDPYQI-----YEA 129 (260)
T ss_pred HHHHHHHHhCCCeEEEEecc---------cccCCCC----HHHHHHHHHhcCCCEEeee-----ecCCHHHH-----HHH
Confidence 44678889999999966 11 1000011 3455778888888977666 33456665 233
Q ss_pred HHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 181 KEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 181 keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
.++|||+|-|-+.. ....+.++...+.|..++. . =.+.+++ +...++|++.|-
T Consensus 130 ~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lv--------e---------vh~~~E~-------~~A~~~gadiIg 185 (260)
T PRK00278 130 RAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLV--------E---------VHDEEEL-------ERALKLGAPLIG 185 (260)
T ss_pred HHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEE--------E---------eCCHHHH-------HHHHHcCCCEEE
Confidence 47999999997652 1233344444444544331 0 0132222 334478999887
Q ss_pred ecC-------CCHHHHHHHHhhcC--CCEEEEcCCC-----------CCCchhhhHhhhhc
Q 016682 258 LEC-------VPPPVAAAATSALQ--IPTIGIGAGP-----------FCSGQVLVYHDLLG 298 (384)
Q Consensus 258 lE~-------Vp~ela~~It~~l~--IPtIGIGAG~-----------~cDGQvLV~~DlLG 298 (384)
+=. ++.+...++.+.++ +|+|.+|.+. ++|| |+|.+-++.
T Consensus 186 in~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~-vlVGsaI~~ 245 (260)
T PRK00278 186 INNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADA-VLVGESLMR 245 (260)
T ss_pred ECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCE-EEECHHHcC
Confidence 543 23566677777763 6899888774 4566 456665554
No 113
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.59 E-value=0.89 Score=44.25 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=54.0
Q ss_pred cEEEEecCC----hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCC
Q 016682 93 PITMVTAYD----YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (384)
Q Consensus 93 ~I~mlTAyD----~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s 168 (384)
.++-++..| ...|+.++++|+|.|=+--+--+.- +..+...-+.+.+.+.+++|++.++.| |.+-+.. ..
T Consensus 92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~-~~g~~~~~~~~~~~eiv~~vr~~~~~P-v~vKl~~-~~--- 165 (296)
T cd04740 92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK-GGGMAFGTDPEAVAEIVKAVKKATDVP-VIVKLTP-NV--- 165 (296)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC-CCcccccCCHHHHHHHHHHHHhccCCC-EEEEeCC-Cc---
Confidence 445556665 4567788899999994321111111 112222345677788889998887766 5666642 22
Q ss_pred HHHHHHHHHHHHHHhCCCEEEe
Q 016682 169 TNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 169 ~e~av~nA~rl~keaGAdaVKL 190 (384)
++..+.+..+. ++|+|+|.+
T Consensus 166 -~~~~~~a~~~~-~~G~d~i~~ 185 (296)
T cd04740 166 -TDIVEIARAAE-EAGADGLTL 185 (296)
T ss_pred -hhHHHHHHHHH-HcCCCEEEE
Confidence 24545454444 799999976
No 114
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=95.58 E-value=0.17 Score=53.19 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=96.5
Q ss_pred ecCChHHHHHHHHcCCCEEEecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-----EeCCCCCCcCCHHH
Q 016682 98 TAYDYPSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-----GDLPFGTYESSTNQ 171 (384)
Q Consensus 98 TAyD~~sA~iae~AGiD~IlVGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-----aDmPfgsY~~s~e~ 171 (384)
|..--.-|..++++|++.|=+|-... .+++.+-+.. -.|.+ +.+++..++..+. .++. +|..-|++
T Consensus 25 t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~---p~e~l---~~l~~~~~~~~l~~l~r~~N~~--G~~~~pdd 96 (448)
T PRK12331 25 TEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED---PWERL---RKIRKAVKKTKLQMLLRGQNLL--GYRNYADD 96 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC---HHHHH---HHHHHhCCCCEEEEEecccccc--ccccCchh
Confidence 33334467789999999995541111 1211221111 23344 4444444443332 2232 56555677
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHH
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAl 248 (384)
+++.-++...++|++.|.+-+.. ..+.+.|+.+.+.|..|.+.|..+-. - +. ..+.+++-++.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~-------p----~~--~~~~~~~~a~~l 163 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS-------P----VH--TIDYFVKLAKEM 163 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC-------C----CC--CHHHHHHHHHHH
Confidence 77766666668999999998763 34566788888899888776654321 0 11 235678888999
Q ss_pred HHcCCcEEEec---CC--C---HHHHHHHHhhcCCCE
Q 016682 249 QEVGCFSVVLE---CV--P---PPVAAAATSALQIPT 277 (384)
Q Consensus 249 eeAGAf~IvlE---~V--p---~ela~~It~~l~IPt 277 (384)
+++||+.|.+- ++ | .++.+.|.+++++|+
T Consensus 164 ~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi 200 (448)
T PRK12331 164 QEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPL 200 (448)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 99999999986 22 5 456666666777773
No 115
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.55 E-value=0.46 Score=48.88 Aligned_cols=131 Identities=27% Similarity=0.329 Sum_probs=79.1
Q ss_pred ccCCCCcCCC---HHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC-------C---
Q 016682 127 HGHDTTLPIT---LEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE-------G--- 192 (384)
Q Consensus 127 lG~~dT~~Vt---ldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE-------g--- 192 (384)
.|+.+++.++ +++.+.+.+.+.+..+ .| +++-+ +|+ .++++..+.|. .+++.|+|+|-|- +
T Consensus 70 ~g~~n~~~~s~~~~~~~~~~~~~~~~~~~~~p-~i~si-~g~--~~~~~~~~~a~-~~~~~g~d~ielN~scP~~~~~~~ 144 (420)
T PRK08318 70 IGFNNIELITDRPLEVNLREIRRVKRDYPDRA-LIASI-MVE--CNEEEWKEIAP-LVEETGADGIELNFGCPHGMSERG 144 (420)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCce-EEEEe-ccC--CCHHHHHHHHH-HHHhcCCCEEEEeCCCCCCccccC
Confidence 4666665443 5666666666554443 44 56665 233 25666666554 4567899998873 1
Q ss_pred -Cc------cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe------
Q 016682 193 -GS------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL------ 258 (384)
Q Consensus 193 -g~------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl------ 258 (384)
|. +...+.++++++. .|||+-=| +|. . ..+.+-|++++++||++|++
T Consensus 145 ~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl--~p~-------------~----~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 145 MGSAVGQVPELVEMYTRWVKRGSRLPVIVKL--TPN-------------I----TDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CcccccCCHHHHHHHHHHHHhccCCcEEEEc--CCC-------------c----ccHHHHHHHHHHCCCCEEEEecccCc
Confidence 10 2344556666553 68887542 221 0 12566788999999999993
Q ss_pred ------c---------------CC--C------HHHHHHHHhhc---CCCEEEEc
Q 016682 259 ------E---------------CV--P------PPVAAAATSAL---QIPTIGIG 281 (384)
Q Consensus 259 ------E---------------~V--p------~ela~~It~~l---~IPtIGIG 281 (384)
| ++ | -+.++++.+++ +||+||.|
T Consensus 206 ~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G 260 (420)
T PRK08318 206 ITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG 260 (420)
T ss_pred cccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec
Confidence 1 11 1 25667788887 79999865
No 116
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=95.49 E-value=0.87 Score=45.02 Aligned_cols=119 Identities=19% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC--CcEE------EeCCC
Q 016682 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLV------GDLPF 162 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~--~~vv------aDmPf 162 (384)
+.++.++. ....--..+-++|+|.|-+-++.+-... ..-...|.+|.+...+.+.+-++. -.+. ...||
T Consensus 72 ~~~~~~l~-~~~~~ie~A~~~g~~~v~i~~~~s~~~~--~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~ 148 (287)
T PRK05692 72 GVTYAALT-PNLKGLEAALAAGADEVAVFASASEAFS--QKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY 148 (287)
T ss_pred CCeEEEEe-cCHHHHHHHHHcCCCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC
Confidence 45555553 3555556667889999976665543311 112235677755544433333321 1121 35688
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C-Cceeee
Q 016682 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G-IAVMGH 214 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G-IPV~gH 214 (384)
.+. .+++..++.+.++. +.|++.|.|-|-. .+..+.|+++.+. + +|+--|
T Consensus 149 ~~~-~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H 205 (287)
T PRK05692 149 EGE-VPPEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGH 205 (287)
T ss_pred CCC-CCHHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 665 68888888777776 7999999999852 5667788888764 3 666655
No 117
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.48 E-value=0.56 Score=44.37 Aligned_cols=138 Identities=19% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHHHH-----HHHHHHHHH
Q 016682 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQA-----VDTAVRILK 181 (384)
Q Consensus 108 ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e~a-----v~nA~rl~k 181 (384)
+-+.|++.|++--.. +.+++....+.+ ..-++.++|+|++. .+.- +..+.+.+
T Consensus 28 a~~~~~~av~v~p~~------------------~~~~~~~~~~~~~~~~~vi~fp~g~~~--~~~k~~~~~~~~ve~A~- 86 (236)
T PF01791_consen 28 AIEYGFDAVCVTPGY------------------VKPAAELLAGSGVKVGLVIGFPFGTST--TEPKGYDQIVAEVEEAI- 86 (236)
T ss_dssp HHHHTSSEEEEEGGG------------------HHHHHHHSTTSTSEEEEEESTTTSSST--HHHHTCEEEHHHHHHHH-
T ss_pred HHHhCCCEEEECHHH------------------HHHHHHHhhccccccceEEEeCCCCCc--cccccccchHHHHHHHH-
Confidence 445699999875333 444444444421 34477999998773 3334 56666777
Q ss_pred HhCCCEEEeCC-------C-ccchHHHHHHHH----HcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 182 EGGMDAIKLEG-------G-SPSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 182 eaGAdaVKLEg-------g-~~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
+.|||+|++=- + ..+..+.|+.++ +.|+||+.. ++.-.. .+.++. ..+.+..-++...
T Consensus 87 ~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~-------~~~~~~--~~~~I~~a~ria~ 156 (236)
T PF01791_consen 87 RLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGE-------EVADEK--KPDLIARAARIAA 156 (236)
T ss_dssp HTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHH-------HBSSTT--HHHHHHHHHHHHH
T ss_pred HcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCch-------hhcccc--cHHHHHHHHHHHH
Confidence 68999998742 1 133344455555 469999987 433211 112222 4456777788889
Q ss_pred HcCCcEEEecCC--------CHHHHHHHHhhcCCC
Q 016682 250 EVGCFSVVLECV--------PPPVAAAATSALQIP 276 (384)
Q Consensus 250 eAGAf~IvlE~V--------p~ela~~It~~l~IP 276 (384)
++|||.|=.+.- ..++.+++++..++|
T Consensus 157 e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 157 ELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp HTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSST
T ss_pred HhCCCEEEecCCccccccHHHHHHHHHHHHhcCCC
Confidence 999999988766 267888888988999
No 118
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.45 E-value=0.12 Score=49.95 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=61.3
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--EeCC------------CCCCcCCHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLP------------FGTYESSTN 170 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--aDmP------------fgsY~~s~e 170 (384)
++-+.++|++.|-.-|+. +|+...+++++.. . +|+ .|+- ||--..+.+
T Consensus 95 ~~~l~~aGa~gv~iED~~----------------~~~~~i~ai~~a~-i-~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~ 156 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE----------------WHIETLQMLTAAA-V-PVIAHTGLTPQSVNTSGGDEGQYRGDEAGE 156 (240)
T ss_pred HHHHHHcCCcEEEEcCcH----------------HHHHHHHHHHHcC-C-eEEEEeCCchhhhhccCCceeeccCHHHHH
Confidence 566677999999888752 6777788887654 4 355 4541 111123466
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeee
Q 016682 171 QAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gH 214 (384)
++++-+..+. ++|||+|-+|+- -.+.++.++++ .+|+++.
T Consensus 157 ~ai~Ra~ay~-~AGAd~i~~e~~---~~e~~~~i~~~~~~P~~~~ 197 (240)
T cd06556 157 QLIADALAYA-PAGADLIVMECV---PVELAKQITEALAIPLAGI 197 (240)
T ss_pred HHHHHHHHHH-HcCCCEEEEcCC---CHHHHHHHHHhCCCCEEEE
Confidence 8888876655 899999999975 45667777764 8899874
No 119
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.42 E-value=0.22 Score=48.36 Aligned_cols=97 Identities=21% Similarity=0.232 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCCccccCCCH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKNV 235 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~ 235 (384)
.+.+..-+++-.++ +.|++++-+=|.. +|..+.++..++ .++||+.++|=+
T Consensus 19 id~~~~~~~i~~l~-~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~----------------- 80 (289)
T PF00701_consen 19 IDEDALKRLIDFLI-EAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGAN----------------- 80 (289)
T ss_dssp B-HHHHHHHHHHHH-HTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESS-----------------
T ss_pred cCHHHHHHHHHHHH-HcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcch-----------------
Confidence 45555556665566 7899999998752 566666666665 578998764411
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC-----C-H---HHHHHHHhhcCCCEEEEcC
Q 016682 236 TSAVKVVETALALQEVGCFSVVLECV-----P-P---PVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 236 ~~a~~ll~rAkAleeAGAf~IvlE~V-----p-~---ela~~It~~l~IPtIGIGA 282 (384)
..++.++.++.++++||+++++-.. + . +-.+.|++.+++|++-.=.
T Consensus 81 -st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 81 -STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp -SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred -hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 2468899999999999999976432 1 2 3456788889999986654
No 120
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.42 E-value=0.25 Score=48.11 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCCccccCCC
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
+.+.+..-+++.+++ +.|+++|-+=|.. +|..+.++..++ ..+||+.|+|
T Consensus 15 ~iD~~~~~~~i~~l~-~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~------------------ 75 (285)
T TIGR00674 15 SVDFAALEKLIDFQI-ENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG------------------ 75 (285)
T ss_pred CcCHHHHHHHHHHHH-HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC------------------
Confidence 356777777777777 6999999997752 566666666665 3588887643
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhcCCCEEEEcC
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIGA 282 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l~IPtIGIGA 282 (384)
....++.++.|+..+++|||+|++=.. | .++ -+.|++++++|++-.-.
T Consensus 76 ~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 76 SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 123467899999999999999987643 2 344 45678889999986644
No 121
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=95.41 E-value=0.56 Score=47.92 Aligned_cols=134 Identities=20% Similarity=0.333 Sum_probs=93.2
Q ss_pred HHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----cchHHHHHHHHHcCCceeeeccC
Q 016682 142 VHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVGL 217 (384)
Q Consensus 142 ~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----~e~~~~I~alv~aGIPV~gHiGL 217 (384)
..++.|++-.+.| +|+|+=|- |. -+ .+.+ +.|++.+.|--|. +...+.|++..+.|||+= ||.
T Consensus 64 ~A~~~Ik~~~~vP-LVaDiHf~-~r----la----~~~~-~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piR--IGV 130 (361)
T COG0821 64 EALKEIKQRLNVP-LVADIHFD-YR----LA----LEAA-ECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIR--IGV 130 (361)
T ss_pred HHHHHHHHhCCCC-EEEEeecc-HH----HH----HHhh-hcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEE--Eec
Confidence 3445666777777 99999983 52 33 4566 6899999998663 346777888889999984 676
Q ss_pred Ccccccc--cCCccccCCCH-HHHHHHHHHHHHHHHcCCcEEEecCC----C--HHHHHHHHhhcCCCE-EEE-cCCCCC
Q 016682 218 TPQAISV--LGGFRPQGKNV-TSAVKVVETALALQEVGCFSVVLECV----P--PPVAAAATSALQIPT-IGI-GAGPFC 286 (384)
Q Consensus 218 tPQ~~~~--lgGfrvqGrt~-~~a~~ll~rAkAleeAGAf~IvlE~V----p--~ela~~It~~l~IPt-IGI-GAG~~c 286 (384)
+--+... +.-| .+-|. +-.+.+++.++-+|+.|=+=|.+-+= . -+.-+.++++++-|+ +|+ =||...
T Consensus 131 N~GSLek~~~~ky--~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEAG~~~ 208 (361)
T COG0821 131 NAGSLEKRLLEKY--GGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKRCDYPLHLGVTEAGMGF 208 (361)
T ss_pred ccCchhHHHHHHh--cCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHhcCCCcccceecccCcc
Confidence 6533221 1111 13354 34477999999999999988877653 1 355677889999995 466 688888
Q ss_pred Cchh
Q 016682 287 SGQV 290 (384)
Q Consensus 287 DGQv 290 (384)
.|-|
T Consensus 209 ~G~V 212 (361)
T COG0821 209 KGIV 212 (361)
T ss_pred ccee
Confidence 8865
No 122
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.40 E-value=0.13 Score=49.60 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=64.7
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC-CCcCCHHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg-sY~~s~e~av~nA~rl~ke 182 (384)
-|+.++++|+|.+++-- |.....+-++++.|.++|+..++.|+++=|.|.. ++..+++... ++.+-
T Consensus 84 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~----~L~~~ 150 (281)
T cd00408 84 LARHAEEAGADGVLVVP---------PYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIA----RLAEH 150 (281)
T ss_pred HHHHHHHcCCCEEEECC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHH----HHhcC
Confidence 35778899999998842 3344578899999999999999999999999963 5667888663 55543
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||.+.+. ...+..+++
T Consensus 151 ~~v~giK~s~~d---~~~~~~~~~ 171 (281)
T cd00408 151 PNIVGIKDSSGD---LDRLTRLIA 171 (281)
T ss_pred CCEEEEEeCCCC---HHHHHHHHH
Confidence 578999998762 344444443
No 123
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.39 E-value=0.26 Score=48.55 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=72.3
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCC
Q 016682 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgG 227 (384)
+||- .-+.+.+..-+.+-.++ +.|+++|-+=|.+ +|..+.++..++ .++||+.|+|-
T Consensus 10 TPf~~dg~iD~~~l~~lv~~~~-~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~---------- 78 (294)
T TIGR02313 10 TPFKRNGDIDEEALRELIEFQI-EGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA---------- 78 (294)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-HcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc----------
Confidence 4552 12356666666666666 6899999998763 677777777664 46899877441
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhc-CCCEEEEcC
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIGA 282 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l-~IPtIGIGA 282 (384)
..-++.++.++..+++||+++++-.. | .++ -+.|++++ ++|++-.-.
T Consensus 79 --------~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 79 --------LNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred --------chHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 12357788899999999999997754 2 333 35578888 899987754
No 124
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.37 E-value=0.13 Score=50.38 Aligned_cols=93 Identities=27% Similarity=0.407 Sum_probs=66.1
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--------EeCCCCCCcC---C---H
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--------GDLPFGTYES---S---T 169 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--------aDmPfgsY~~---s---~ 169 (384)
..++++++|++.|-+-|+ +||....+++++. ..| |+ .|.-+|+|.. + .
T Consensus 96 a~r~~~~aGa~aVkiEd~----------------~~~~~~I~al~~a-gip-V~gHiGL~pq~~~~~gg~~~~grt~~~a 157 (254)
T cd06557 96 AARLMKEAGADAVKLEGG----------------AEVAETIRALVDA-GIP-VMGHIGLTPQSVNQLGGYKVQGKTEEEA 157 (254)
T ss_pred HHHHHHHhCCeEEEEcCc----------------HHHHHHHHHHHHc-CCC-eeccccccceeeeccCCceeccCCHHHH
Confidence 367888899999988775 4899999988754 355 33 3333466622 3 4
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCc
Q 016682 170 NQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTP 219 (384)
Q Consensus 170 e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtP 219 (384)
+++++-|..+. ++||++|-||+= + .+.++.++++ .||++| ||=-|
T Consensus 158 ~~~i~ra~a~~-~AGA~~i~lE~v-~--~~~~~~i~~~v~iP~ig-iGaG~ 203 (254)
T cd06557 158 ERLLEDALALE-EAGAFALVLECV-P--AELAKEITEALSIPTIG-IGAGP 203 (254)
T ss_pred HHHHHHHHHHH-HCCCCEEEEcCC-C--HHHHHHHHHhCCCCEEE-eccCC
Confidence 67777776655 899999999996 4 3678888864 799987 45444
No 125
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.37 E-value=0.36 Score=47.28 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=72.3
Q ss_pred eCCCCC-CcCCHHHHHHHHHHHHHH-hCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCccccccc
Q 016682 159 DLPFGT-YESSTNQAVDTAVRILKE-GGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 159 DmPfgs-Y~~s~e~av~nA~rl~ke-aGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~l 225 (384)
=+||.. -+.+.+..-+++.+++ + .|+++|-+-|.. +|..+.++..++ .++||+.++|-+
T Consensus 12 ~TPf~~dg~iD~~~~~~li~~l~-~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~------- 83 (293)
T PRK04147 12 LTPFDEDGQIDEQGLRRLVRFNI-EKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSV------- 83 (293)
T ss_pred ECcCCCCCCcCHHHHHHHHHHHH-hcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCC-------
Confidence 355632 2346666666666666 7 899999998853 566666776664 458888764411
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhcCCCEEEEc
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l~IPtIGIG 281 (384)
..++.++.++..+++||+++++-.. | +++ .++|++++++|++..-
T Consensus 84 -----------~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 84 -----------NTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred -----------CHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 2467889999999999999997543 1 333 4567888999999884
No 126
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.36 E-value=0.6 Score=46.90 Aligned_cols=145 Identities=15% Similarity=0.129 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCEE-E-ecchhhhh-hccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCc-CCHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDIC-L-VGDSAAMV-VHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE-SSTNQAVDTAVRI 179 (384)
Q Consensus 104 sA~iae~AGiD~I-l-VGDSl~mv-~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~-~s~e~av~nA~rl 179 (384)
.|++++++|+|.| + .|=....+ --|+-.-+.-..+.+...+++|++.++.| |++=+--|-.. .+.+++++.+..
T Consensus 72 aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~P-VsvKiR~g~~~~~~~~~~~~~~~~- 149 (318)
T TIGR00742 72 CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIP-VTVKHRIGIDPLDSYEFLCDFVEI- 149 (318)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCC-eEEEEecCCCCcchHHHHHHHHHH-
Confidence 4677888899999 3 55433332 23445555566777788888888888777 55555432111 233566655544
Q ss_pred HHHhCCCEEEeCCCcc--------c-------hHHHHHHHHH-c-CCceeeeccCCcccccccCCccccCCCHHHHHHHH
Q 016682 180 LKEGGMDAIKLEGGSP--------S-------RITAARGIVE-A-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~--------e-------~~~~I~alv~-a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll 242 (384)
++++|+++|-+.|.+. . ..+.|+.+.+ . .|||+|+ ||. +|.+++.+.+
T Consensus 150 l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N-----------GdI----~s~~da~~~l 214 (318)
T TIGR00742 150 VSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN-----------GGI----KNSEQIKQHL 214 (318)
T ss_pred HHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE-----------CCc----CCHHHHHHHH
Confidence 4579999999988631 0 2356777766 3 6999975 443 4555555544
Q ss_pred HHHHHHHHcCCcEEEec--CC-CHHHHHHHHhhc
Q 016682 243 ETALALQEVGCFSVVLE--CV-PPPVAAAATSAL 273 (384)
Q Consensus 243 ~rAkAleeAGAf~IvlE--~V-p~ela~~It~~l 273 (384)
+ |||+|.+= .+ .+-+...+.+.+
T Consensus 215 -------~-g~dgVMigRgal~nP~if~~~~~~l 240 (318)
T TIGR00742 215 -------S-HVDGVMVGREAYENPYLLANVDREI 240 (318)
T ss_pred -------h-CCCEEEECHHHHhCCHHHHHHHHHh
Confidence 2 89988753 22 244555554433
No 127
>PRK00208 thiG thiazole synthase; Reviewed
Probab=95.36 E-value=0.17 Score=49.53 Aligned_cols=108 Identities=25% Similarity=0.237 Sum_probs=72.3
Q ss_pred CHHHHHHhhhCCCcEEE-EecCChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~m-lTAyD~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
|+..-+.+.++| ..++ +++-|...|+-++++|+|+|.. |.-.|. -.|..+ .+++ +.|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGs-g~gi~~------~~~i---~~i~e~~~vp-VI 179 (250)
T PRK00208 112 TLKAAEILVKEG-FVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGS-GLGLLN------PYNL---RIIIEQADVP-VI 179 (250)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCC-CCCCCC------HHHH---HHHHHhcCCe-EE
Confidence 555555665554 7788 7999999999999999999964 333331 123222 4554 4454444555 88
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------cchHHHHHHHHHcC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEAG 208 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------~e~~~~I~alv~aG 208 (384)
+| |+. .+++++ .+.| |.|||+|-+-.+. ..++...+..+++|
T Consensus 180 ve---aGI-~tpeda----~~Am-elGAdgVlV~SAItka~dP~~ma~af~~Av~aG 227 (250)
T PRK00208 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTAIAVAGDPVAMARAFKLAVEAG 227 (250)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHH
Confidence 88 677 589998 4577 6999999886542 35566666666655
No 128
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=95.36 E-value=0.46 Score=47.82 Aligned_cols=218 Identities=21% Similarity=0.248 Sum_probs=125.0
Q ss_pred CCCHHHHHHhhhCCCcEEEEecCChHHHHH--HHHcCCCEEEecc----hhhhhhccCCCCcCCCHHHHHHHHHHHHcc-
Q 016682 78 RVTLTHLRQKHKNGEPITMVTAYDYPSAVH--LDSAGIDICLVGD----SAAMVVHGHDTTLPITLEEMLVHCRAVARG- 150 (384)
Q Consensus 78 ~~t~~~lr~~k~~g~~I~mlTAyD~~sA~i--ae~AGiD~IlVGD----Sl~mv~lG~~dT~~VtldeMl~h~raV~Rg- 150 (384)
.++..+|+-++... -+..+|--|...+-. --+||.|+|.+-- ...+.-+|.+| -..+|-.....|+|.
T Consensus 31 ~l~~~df~g~~g~n-E~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led----~v~~in~~aa~iAR~a 105 (311)
T COG0646 31 GLDEADFRGLKGNN-ELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLED----KVYEINQKAARIARRA 105 (311)
T ss_pred CCcHHhhccccCCh-HHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHH----HHHHHHHHHHHHHHHH
Confidence 46677777755443 445667777666543 2389999998641 22333344433 234444433334332
Q ss_pred cC------CCcEEEeCCCCC--------CcCCHH---HHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHc----
Q 016682 151 AK------RPLLVGDLPFGT--------YESSTN---QAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEA---- 207 (384)
Q Consensus 151 a~------~~~vvaDmPfgs--------Y~~s~e---~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~a---- 207 (384)
++ ..||.++|.=.+ |..+-+ ++.+-.++.+.++|||++-||=-. .+.-..+.++.+.
T Consensus 106 A~~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~ 185 (311)
T COG0646 106 ADEAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEEL 185 (311)
T ss_pred HhhcCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhc
Confidence 22 346767774211 112233 344455566668999999999531 3344445555543
Q ss_pred --CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC--CHHHHHHHHhhcC-CCEEEEcC
Q 016682 208 --GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV--PPPVAAAATSALQ-IPTIGIGA 282 (384)
Q Consensus 208 --GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V--p~ela~~It~~l~-IPtIGIGA 282 (384)
.+|||.| .+++. .|...-|.+.+.+ ...++.+|+|++=+-|- |.++...| +.++ ++-.-+-+
T Consensus 186 ~~~LPv~~s-----~Ti~~-sG~tl~Gq~~~a~------~~~l~~~~~~~vGlNCa~Gp~~m~~~l-~~ls~~~~~~vs~ 252 (311)
T COG0646 186 GVRLPVMIS-----GTITD-SGRTLSGQTIEAF------LNSLEHLGPDAVGLNCALGPDEMRPHL-RELSRIADAFVSV 252 (311)
T ss_pred CCcccEEEE-----EEEec-CceecCCCcHHHH------HHHhhccCCcEEeeccccCHHHHHHHH-HHHHhccCceEEE
Confidence 3999998 34433 4677778876553 45667889999999997 44444443 3333 22211111
Q ss_pred CCCCCchhhhHhhhhcCCCCCCCCCCCcchhhh---hhhhHHHHHHHHHHHHHHh
Q 016682 283 GPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQ---FARVGDVINKALLEYKEEV 334 (384)
Q Consensus 283 G~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~---y~~~~~~~~~A~~~y~~eV 334 (384)
. | .--+|.+... |..--+.+.+.+..|+++=
T Consensus 253 -----------------~--P--NAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g 286 (311)
T COG0646 253 -----------------Y--P--NAGLPNAFGERAVYDLTPEYMAEALAEFAEEG 286 (311)
T ss_pred -----------------e--C--CCCCCcccCCccccCCCHHHHHHHHHHHHHhC
Confidence 1 2 1225666666 8777788888888888763
No 129
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=95.34 E-value=0.18 Score=49.37 Aligned_cols=108 Identities=24% Similarity=0.218 Sum_probs=72.4
Q ss_pred CHHHHHHhhhCCCcEEE-EecCChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 80 TLTHLRQKHKNGEPITM-VTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~m-lTAyD~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
|+..-+.+-++| ..++ +++-|...|+-++++|+++|.. |.-.|.. .|.. + .+++. .|++..+.| |+
T Consensus 112 tv~aa~~L~~~G-f~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg-~Gi~-----~-~~~I~---~I~e~~~vp-VI 179 (248)
T cd04728 112 TLKAAEILVKEG-FTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG-QGLL-----N-PYNLR---IIIERADVP-VI 179 (248)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCC-CCCC-----C-HHHHH---HHHHhCCCc-EE
Confidence 555556665554 6777 7999999999999999999964 3333311 2322 2 55555 444445555 88
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------cchHHHHHHHHHcC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEAG 208 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------~e~~~~I~alv~aG 208 (384)
+| |+. .+++++ .+.| |.|||+|-+-.+. ..++...+..+++|
T Consensus 180 ~e---gGI-~tpeda----~~Am-elGAdgVlV~SAIt~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 180 VD---AGI-GTPSDA----AQAM-ELGADAVLLNTAIAKAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred Ee---CCC-CCHHHH----HHHH-HcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHH
Confidence 88 677 589998 4677 6999999886541 34556666666554
No 130
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.33 E-value=0.43 Score=46.81 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=77.0
Q ss_pred HHHhhhCCCcEEEEecCCh------HHHHHHHHcCCCEEEec----chhh----hhhccCCC-CcCCCHHHHHHHHHHHH
Q 016682 84 LRQKHKNGEPITMVTAYDY------PSAVHLDSAGIDICLVG----DSAA----MVVHGHDT-TLPITLEEMLVHCRAVA 148 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~------~sA~iae~AGiD~IlVG----DSl~----mv~lG~~d-T~~VtldeMl~h~raV~ 148 (384)
|.+++.+.-.|.-+|+=|. .-++.++++|+|+|=+| |.++ --.-.... -..+|+++.+..++.++
T Consensus 8 f~~~~~~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r 87 (263)
T CHL00200 8 FEKLDKQCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVN 87 (263)
T ss_pred HHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4443333346677777652 23666789999999665 2211 00000111 34578899999999998
Q ss_pred cccCCCcEEEeCCCCCCcCCHH--HHHHHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 149 RGAKRPLLVGDLPFGTYESSTN--QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 149 Rga~~~~vvaDmPfgsY~~s~e--~av~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
+..+.|++ +++| .|+- -.+++-.+..+++|+|+|-+=|=. +|..+.++.+.+.||..+
T Consensus 88 ~~~~~p~v-----lm~Y-~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 88 GEIKAPIV-----IFTY-YNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELI 148 (263)
T ss_pred cCCCCCEE-----EEec-ccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 76666643 3566 3542 134444556678999999998843 566677888888998765
No 131
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.33 E-value=1.4 Score=43.08 Aligned_cols=103 Identities=18% Similarity=0.180 Sum_probs=62.9
Q ss_pred CHHHHHHhhhC-CC-cEEEEecCCh----HHHHHHHHcC--CCEEEe--cchhhhhhccCCCCcCCCHHHHHHHHHHHHc
Q 016682 80 TLTHLRQKHKN-GE-PITMVTAYDY----PSAVHLDSAG--IDICLV--GDSAAMVVHGHDTTLPITLEEMLVHCRAVAR 149 (384)
Q Consensus 80 t~~~lr~~k~~-g~-~I~mlTAyD~----~sA~iae~AG--iD~IlV--GDSl~mv~lG~~dT~~VtldeMl~h~raV~R 149 (384)
.+..++..++. +. .++-+...|. ..|+.+++++ +|.|-+ |..-. -|+.+...-+.+.+.+.+++|++
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~---~~~g~~l~~~~~~~~eiv~~vr~ 154 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV---KGGGIAIGQDPELSADVVKAVKD 154 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC---CCCccccccCHHHHHHHHHHHHH
Confidence 34445443332 22 3455556663 3467777764 899954 43222 24445455567788888899988
Q ss_pred ccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 016682 150 GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 150 ga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg 192 (384)
.++.| |.+-+.- +.++..+.+.++ +++|+|+|.+-+
T Consensus 155 ~~~~p-v~vKi~~-----~~~~~~~~a~~l-~~~G~d~i~v~n 190 (300)
T TIGR01037 155 KTDVP-VFAKLSP-----NVTDITEIAKAA-EEAGADGLTLIN 190 (300)
T ss_pred hcCCC-EEEECCC-----ChhhHHHHHHHH-HHcCCCEEEEEc
Confidence 87666 7788862 334555555554 579999999854
No 132
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.33 E-value=0.25 Score=46.77 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=60.6
Q ss_pred CCHHHHHH-hhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 79 VTLTHLRQ-KHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 79 ~t~~~lr~-~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~v 156 (384)
.|+.+|-+ .|+++ .++|--|.++..++.++++|+|+|.+. +.||-. |.. .-.+ +...+.+++. +.| |
T Consensus 79 ~~l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TT------LsGYT~~t~~-~~pD-~~lv~~l~~~-~~p-v 147 (192)
T PF04131_consen 79 ETLEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTT------LSGYTPYTKG-DGPD-FELVRELVQA-DVP-V 147 (192)
T ss_dssp S-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-T------TTTSSTTSTT-SSHH-HHHHHHHHHT-TSE-E
T ss_pred cCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEcc------cccCCCCCCC-CCCC-HHHHHHHHhC-CCc-E
Confidence 67777654 45555 999999999999999999999999764 456643 223 2222 3334555553 444 8
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
++. |.| .+|+++ .+.+ +.||++|-+
T Consensus 148 IaE---Gri-~tpe~a----~~al-~~GA~aVVV 172 (192)
T PF04131_consen 148 IAE---GRI-HTPEQA----AKAL-ELGAHAVVV 172 (192)
T ss_dssp EEE---SS---SHHHH----HHHH-HTT-SEEEE
T ss_pred eec---CCC-CCHHHH----HHHH-hcCCeEEEE
Confidence 888 788 599999 5688 699999988
No 133
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.27 E-value=0.47 Score=46.35 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHh-CCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccC
Q 016682 160 LPFG-TYESSTNQAVDTAVRILKEG-GMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 160 mPfg-sY~~s~e~av~nA~rl~kea-GAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lg 226 (384)
+||. ..+.+.+..-+++.+++ +. |+++|-+-|.. +|..+.++..++ ..+||+.++|-
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~-~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~--------- 79 (288)
T cd00954 10 TPFDENGEINEDVLRAIVDYLI-EKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS--------- 79 (288)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-hcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC---------
Confidence 4552 23457777777777777 58 99999998863 667777777775 35788765331
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhc-CCCEEEEcC
Q 016682 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSAL-QIPTIGIGA 282 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l-~IPtIGIGA 282 (384)
...++.++.|+..+++||+++++=.. | +++ -+.|++++ ++|++..-.
T Consensus 80 ---------~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 80 ---------LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 13457899999999999999985322 2 344 35578889 899998744
No 134
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.26 E-value=1.5 Score=42.91 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=97.8
Q ss_pred HHHhhhCCC--cEEEEecCC--hH----HHHHHHHcCCCEEEecchh---------hhhhccCCCCcCCCHHHHHHHHHH
Q 016682 84 LRQKHKNGE--PITMVTAYD--YP----SAVHLDSAGIDICLVGDSA---------AMVVHGHDTTLPITLEEMLVHCRA 146 (384)
Q Consensus 84 lr~~k~~g~--~I~mlTAyD--~~----sA~iae~AGiD~IlVGDSl---------~mv~lG~~dT~~VtldeMl~h~ra 146 (384)
|++++++++ .|.-+|+=| .. -++.+++.|+|+|=+|--. .....-..=-..+++++.+..++.
T Consensus 3 ~~~~~~~~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~ 82 (258)
T PRK13111 3 FAALKAEGRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVRE 82 (258)
T ss_pred hHHHHhcCCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444444444 445555543 22 2555778999999766322 111110011134688899999999
Q ss_pred HH-cccCCCcEEEeCCCCCCcCCH-HH-HHHHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCceeeeccCCcccc
Q 016682 147 VA-RGAKRPLLVGDLPFGTYESST-NQ-AVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVMGHVGLTPQAI 222 (384)
Q Consensus 147 V~-Rga~~~~vvaDmPfgsY~~s~-e~-av~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~gHiGLtPQ~~ 222 (384)
++ +..+.|++ +++| .|+ -+ .++.-.+..+++|++||-|-|=. +|..+.++++.+.|+..+- -++|.+
T Consensus 83 ~r~~~~~~p~v-----lm~Y-~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~--lvap~t- 153 (258)
T PRK13111 83 IREKDPTIPIV-----LMTY-YNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF--LVAPTT- 153 (258)
T ss_pred HHhcCCCCCEE-----EEec-ccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE--EeCCCC-
Confidence 98 54555644 2344 232 11 33344566778999999997742 4566777777888877651 122211
Q ss_pred cccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe-c---------CCC---HHHHHHHHhhcCCCEEEEcCCC
Q 016682 223 SVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL-E---------CVP---PPVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 223 ~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl-E---------~Vp---~ela~~It~~l~IPtIGIGAG~ 284 (384)
+++ |.+.+.+..-..|++ + ..| .+..++|.+..++|++ +|.|=
T Consensus 154 -----------~~e-------ri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~-vGfGI 209 (258)
T PRK13111 154 -----------TDE-------RLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVA-VGFGI 209 (258)
T ss_pred -----------CHH-------HHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEE-EEccc
Confidence 122 333333333333443 1 111 4677888888899987 46654
No 135
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.21 E-value=1.1 Score=45.37 Aligned_cols=166 Identities=15% Similarity=0.180 Sum_probs=96.3
Q ss_pred cEEEEecCC--hHHHHHHHHcCCCEEEecchhhh-hhccCCC--------------Cc---CCCHHHHHHHHHHHHcccC
Q 016682 93 PITMVTAYD--YPSAVHLDSAGIDICLVGDSAAM-VVHGHDT--------------TL---PITLEEMLVHCRAVARGAK 152 (384)
Q Consensus 93 ~I~mlTAyD--~~sA~iae~AGiD~IlVGDSl~m-v~lG~~d--------------T~---~VtldeMl~h~raV~Rga~ 152 (384)
||.+-...| ....+.++++|+.+|.+|. +.- -..|++. .. ...+|.++.+.+... .+
T Consensus 61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~kt-vt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~~ 137 (344)
T PRK05286 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGT-VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--RG 137 (344)
T ss_pred CCEECCCCCCChHHHHHHHHcCCCEEEeCC-cCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--CC
Confidence 554333333 3445567788899888874 322 1233331 10 234677777766543 34
Q ss_pred CCcEEEeCCC---CCCcCCHHHHHHHHHHHHHHhCCCEEEeC-------CCc-----cchHHHHHHHHHc-C-----Cce
Q 016682 153 RPLLVGDLPF---GTYESSTNQAVDTAVRILKEGGMDAIKLE-------GGS-----PSRITAARGIVEA-G-----IAV 211 (384)
Q Consensus 153 ~~~vvaDmPf---gsY~~s~e~av~nA~rl~keaGAdaVKLE-------gg~-----~e~~~~I~alv~a-G-----IPV 211 (384)
.| |++.+-- ...+.+.++-.+.+.++- + +||++-|. |+. +...+.+++++++ + +||
T Consensus 138 ~p-vivsI~~~~~~~~~~~~~d~~~~~~~~~-~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV 214 (344)
T PRK05286 138 IP-LGINIGKNKDTPLEDAVDDYLICLEKLY-P-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPL 214 (344)
T ss_pred Cc-EEEEEecCCCCCcccCHHHHHHHHHHHH-h-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCce
Confidence 45 6666621 112346777766555542 3 58987664 110 2344556666652 3 898
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC---------------------C------HH
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV---------------------P------PP 264 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V---------------------p------~e 264 (384)
..=+ +|. -+. +++.+-|++++++||++|++-.- + -+
T Consensus 215 ~vKl--sp~------------~~~---~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~ 277 (344)
T PRK05286 215 LVKI--APD------------LSD---EELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTE 277 (344)
T ss_pred EEEe--CCC------------CCH---HHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHH
Confidence 7532 231 122 35778889999999999998641 1 13
Q ss_pred HHHHHHhhc--CCCEEEEc
Q 016682 265 VAAAATSAL--QIPTIGIG 281 (384)
Q Consensus 265 la~~It~~l--~IPtIGIG 281 (384)
.++++.+++ ++|+||.|
T Consensus 278 ~v~~l~~~~~~~ipIig~G 296 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVG 296 (344)
T ss_pred HHHHHHHHhCCCCCEEEEC
Confidence 677888888 79988765
No 136
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.17 E-value=0.53 Score=46.52 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=71.7
Q ss_pred EeCCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCccccccc
Q 016682 158 GDLPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 158 aDmPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~l 225 (384)
.=+||. ..+.+.+..-+.+-.++ +.|+++|-+=|.+ +|..+.++..++ .++||+.|+|.
T Consensus 15 ~vTPf~~dg~iD~~~l~~li~~l~-~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-------- 85 (303)
T PRK03620 15 PVTPFDADGSFDEAAYREHLEWLA-PYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-------- 85 (303)
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHH-HcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--------
Confidence 345663 23456666666665666 6899999998763 566677776664 46899876431
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----C--HHH---HHHHHhhcCCCEEEEc
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----P--PPV---AAAATSALQIPTIGIG 281 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----p--~el---a~~It~~l~IPtIGIG 281 (384)
...+.++.++..+++||+++++-.. + +++ -+.|++++++|++..-
T Consensus 86 -----------~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 86 -----------GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred -----------CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1246788999999999999987433 1 222 3567888999999875
No 137
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.17 E-value=0.91 Score=43.54 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=65.9
Q ss_pred cCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------------------ccchHHHHHHHHHcCCcee
Q 016682 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG------------------SPSRITAARGIVEAGIAVM 212 (384)
Q Consensus 151 a~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg------------------~~e~~~~I~alv~aGIPV~ 212 (384)
.+.| +++.+- + .++++..+.|.++ ++ ++++|.|--| .+...+.++++.+.++||.
T Consensus 71 ~~~p-~~vqi~--g--~~~~~~~~aa~~~-~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVs 143 (233)
T cd02911 71 SNVL-VGVNVR--S--SSLEPLLNAAALV-AK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVS 143 (233)
T ss_pred cCCe-EEEEec--C--CCHHHHHHHHHHH-hh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEE
Confidence 3444 667763 2 3777777766554 44 4688887533 1334677888888899986
Q ss_pred eeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-C-----HHHHHHHHhhcCCCEEEEc
Q 016682 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-P-----PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 213 gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p-----~ela~~It~~l~IPtIGIG 281 (384)
-=+. .| -+ .+.++-++.++++|++.|-+.+- + -+.++++. +++|+||-|
T Consensus 144 vKir---------~g-----~~----~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIgnG 198 (233)
T cd02911 144 VKIR---------AG-----VD----VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--TELFIIGNN 198 (233)
T ss_pred EEEc---------CC-----cC----cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEEEC
Confidence 3211 11 12 34667788999999999988753 2 35555554 688987544
No 138
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.13 E-value=0.85 Score=46.10 Aligned_cols=141 Identities=21% Similarity=0.257 Sum_probs=81.6
Q ss_pred HHHHHHcCCCEEEe--cchhhhhhc--cCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCCCCCcCCHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLV--GDSAAMVVH--GHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 105 A~iae~AGiD~IlV--GDSl~mv~l--G~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPfgsY~~s~e~av~nA~rl 179 (384)
++.++++|+|.|=| ||.++...+ |++-.. +++.+ ++++...++.-+. .=+| +. .+.++. +.
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~e~i----~~~~~~~~~~~~~~ll~p--g~-~~~~dl-----~~ 95 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DLEYI----EAAADVVKRAKVAVLLLP--GI-GTVHDL-----KA 95 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hHHHH----HHHHHhCCCCEEEEEecc--Cc-cCHHHH-----HH
Confidence 45689999999955 444443333 444322 33333 3333333333233 2234 22 244432 33
Q ss_pred HHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+.|++.|.+-... +...+.|+.+.+.|..|++-+=-. + +. .-+++++.++.++++||+.|
T Consensus 96 a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s---------~----~~--~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 96 AYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS---------H----MT--PPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc---------c----CC--CHHHHHHHHHHHHhcCCCEE
Confidence 347899999875431 345677888888998888642111 1 12 23578999999999999999
Q ss_pred Eec-----CCCH---HHHHHHHhhcC
Q 016682 257 VLE-----CVPP---PVAAAATSALQ 274 (384)
Q Consensus 257 vlE-----~Vp~---ela~~It~~l~ 274 (384)
.+- +.|. ++.+.+.+.++
T Consensus 161 ~i~DT~G~~~P~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 161 YIVDSAGAMLPDDVRDRVRALKAVLK 186 (333)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhCC
Confidence 976 2254 44445555665
No 139
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.08 E-value=2 Score=41.49 Aligned_cols=147 Identities=13% Similarity=0.195 Sum_probs=87.0
Q ss_pred HHHHhhhCCCcEEEEecCChH---HH-HHHHHcCCCEE-E-ecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 83 HLRQKHKNGEPITMVTAYDYP---SA-VHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 83 ~lr~~k~~g~~I~mlTAyD~~---sA-~iae~AGiD~I-l-VGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
.+.+.+.+...++-+..-|.. .+ ..+++ ++|+| + .|=... ++-.|+-..+.-..+-+...+++|+. .+.|
T Consensus 60 e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~P- 136 (231)
T TIGR00736 60 QIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKP- 136 (231)
T ss_pred HHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCc-
Confidence 444554444344444332433 32 44444 78988 3 553222 23334444445566777777788874 4556
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc----chHHHHHHHHHc--CCceeeeccCCcccccccCCcc
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----SRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFR 229 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~----e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfr 229 (384)
|.+=|.- ++ +.++.++.|.++. ++|+++|.+..... -..+.|+.+.++ .|||+|. ||.
T Consensus 137 VsvKiR~-~~--~~~~~~~~a~~l~-~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN-----------GgI- 200 (231)
T TIGR00736 137 IFVKIRG-NC--IPLDELIDALNLV-DDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN-----------NSI- 200 (231)
T ss_pred EEEEeCC-CC--CcchHHHHHHHHH-HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE-----------CCc-
Confidence 7777764 23 3345566665554 79999999976521 246788998886 4999985 332
Q ss_pred ccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 230 PQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 230 vqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
+|. ++|+.+.++||++|-+
T Consensus 201 ---~s~-------eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 201 ---DDI-------ESAKEMLKAGADFVSV 219 (231)
T ss_pred ---CCH-------HHHHHHHHhCCCeEEE
Confidence 233 3555555679998864
No 140
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=95.06 E-value=0.97 Score=46.50 Aligned_cols=152 Identities=22% Similarity=0.327 Sum_probs=103.7
Q ss_pred HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 016682 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (384)
Q Consensus 108 ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAda 187 (384)
+++||+|++=+. |.=.+-....+.|++..+.| ++||+=| .| .-|+ ..+ +.|+|+
T Consensus 51 L~~aGceiVRva---------------v~~~~~a~al~~I~~~~~iP-lvADIHF-d~----~lAl----~a~-~~G~~~ 104 (360)
T PRK00366 51 LARAGCEIVRVA---------------VPDMEAAAALPEIKKQLPVP-LVADIHF-DY----RLAL----AAA-EAGADA 104 (360)
T ss_pred HHHcCCCEEEEc---------------cCCHHHHHhHHHHHHcCCCC-EEEecCC-CH----HHHH----HHH-HhCCCE
Confidence 567777777432 11123345567788888877 9999998 55 3453 456 689999
Q ss_pred EEeCCCc-----cchHHHHHHHHHcCCceeeeccCCcccccc--cCCccccCC-CH-HHHHHHHHHHHHHHHcCCcEEEe
Q 016682 188 IKLEGGS-----PSRITAARGIVEAGIAVMGHVGLTPQAISV--LGGFRPQGK-NV-TSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 188 VKLEgg~-----~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~--lgGfrvqGr-t~-~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
|.|--|. +...+.|++..+.|||+ -||.+--+... +.- .|. |. +-.+.+++.++.+|+-|=+=|++
T Consensus 105 iRINPGNig~~~~~v~~vv~~ak~~~ipI--RIGvN~GSL~~~~~~~---yg~~t~eamveSAl~~~~~le~~~f~~ivi 179 (360)
T PRK00366 105 LRINPGNIGKRDERVREVVEAAKDYGIPI--RIGVNAGSLEKDLLEK---YGEPTPEALVESALRHAKILEELGFDDIKI 179 (360)
T ss_pred EEECCCCCCchHHHHHHHHHHHHHCCCCE--EEecCCccChHHHHHH---cCCCCHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 9998663 23445566666789987 46766543321 111 133 43 34477999999999999999988
Q ss_pred cCC----C--HHHHHHHHhhcCCCE-EEE-cCCCCCCchh
Q 016682 259 ECV----P--PPVAAAATSALQIPT-IGI-GAGPFCSGQV 290 (384)
Q Consensus 259 E~V----p--~ela~~It~~l~IPt-IGI-GAG~~cDGQv 290 (384)
-+= + -+.-+.++++.+-|+ +|+ =||...+|-|
T Consensus 180 S~KsS~v~~~i~ayrlla~~~dyPLHlGvTEAG~~~~G~i 219 (360)
T PRK00366 180 SVKASDVQDLIAAYRLLAKRCDYPLHLGVTEAGMGFKGTV 219 (360)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCCCceecccCCCCCCCcee
Confidence 753 2 355677889999995 576 7999999977
No 141
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.03 E-value=0.65 Score=47.04 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHcc-cCCCcEEEeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCcee
Q 016682 135 ITLEEMLVHCRAVARG-AKRPLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVM 212 (384)
Q Consensus 135 VtldeMl~h~raV~Rg-a~~~~vvaDm-PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~ 212 (384)
.+.+++-...+.++.- ++.| +-+++ .|... ...++- .+++.+.++..|-+-+|.++ .++.+.++||+|+
T Consensus 37 ~~~e~l~~~i~~~~~l~tdkP-fGVnl~~~~~~-~~~~~~----l~vi~e~~v~~V~~~~G~P~---~~~~lk~~Gi~v~ 107 (320)
T cd04743 37 MRGEQVKALLEETAELLGDKP-WGVGILGFVDT-ELRAAQ----LAVVRAIKPTFALIAGGRPD---QARALEAIGISTY 107 (320)
T ss_pred CCHHHHHHHHHHHHHhccCCC-eEEEEeccCCC-cchHHH----HHHHHhcCCcEEEEcCCChH---HHHHHHHCCCEEE
Confidence 4566665555666553 5667 44444 23221 111222 34555789999999888433 3789999999999
Q ss_pred eeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC----------HHHHHHHHhhc---------
Q 016682 213 GHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP----------PPVAAAATSAL--------- 273 (384)
Q Consensus 213 gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp----------~ela~~It~~l--------- 273 (384)
.|++ | ++.|+.++++|||+|++|+.. -.+...+.+.+
T Consensus 108 ~~v~-----------------s-------~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~ 163 (320)
T cd04743 108 LHVP-----------------S-------PGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKA 163 (320)
T ss_pred EEeC-----------------C-------HHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhccccc
Confidence 7621 2 235677889999999998653 12455555555
Q ss_pred -CCCEEEEcCCCCCCchhhhHhhhhcC
Q 016682 274 -QIPTIGIGAGPFCSGQVLVYHDLLGM 299 (384)
Q Consensus 274 -~IPtIGIGAG~~cDGQvLV~~DlLG~ 299 (384)
+||+| -||.=.||.=+...=.||.
T Consensus 164 ~~iPVi--AAGGI~dgr~~aaalaLGA 188 (320)
T cd04743 164 GKIHLL--FAGGIHDERSAAMVSALAA 188 (320)
T ss_pred CCccEE--EEcCCCCHHHHHHHHHcCC
Confidence 79976 4666667776555555554
No 142
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.02 E-value=0.61 Score=49.78 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=45.6
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCCCCCcCCHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPfgsY~~s~e~av~nA~r 178 (384)
.|...+..+-+||+|+|.+- +. +|+.. .++...+.|++..+..+|+ +|. .+.+++ .+
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD-~~----~g~~~-------~~~~~i~~ik~~~p~~~vi~g~v------~t~e~a----~~ 305 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLD-SS----QGDSI-------YQLEMIKYIKKTYPELDVIGGNV------VTMYQA----QN 305 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEe-CC----CCCcH-------HHHHHHHHHHHhCCCCcEEEecC------CCHHHH----HH
Confidence 56788999999999999873 31 23322 2334455666666645555 565 356676 45
Q ss_pred HHHHhCCCEEEeC
Q 016682 179 ILKEGGMDAIKLE 191 (384)
Q Consensus 179 l~keaGAdaVKLE 191 (384)
++ ++|||+|++-
T Consensus 306 a~-~aGaD~i~vg 317 (505)
T PLN02274 306 LI-QAGVDGLRVG 317 (505)
T ss_pred HH-HcCcCEEEEC
Confidence 66 6999999984
No 143
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.01 E-value=0.16 Score=49.51 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=59.2
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~ke 182 (384)
.|+.++++|+|.+++.- |.....+-++++.|.+.|++.++.|+++=|.|. -++..+++.. .++.+.
T Consensus 85 ~a~~a~~~Gad~v~v~p---------P~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~ 151 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVT---------PYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETV----KRLAEE 151 (285)
T ss_pred HHHHHHHcCCCEEEEcC---------CcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHH----HHHHcC
Confidence 46788899999998753 334455779999999999999999999999994 5676787765 356654
Q ss_pred hCCCEEEeCCC
Q 016682 183 GGMDAIKLEGG 193 (384)
Q Consensus 183 aGAdaVKLEgg 193 (384)
-.+.+||-..+
T Consensus 152 ~~v~giK~s~~ 162 (285)
T TIGR00674 152 PNIVAIKEATG 162 (285)
T ss_pred CCEEEEEeCCC
Confidence 56788885544
No 144
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.01 E-value=0.44 Score=47.75 Aligned_cols=194 Identities=14% Similarity=0.071 Sum_probs=100.9
Q ss_pred HHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE--EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-Ee
Q 016682 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC--LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GD 159 (384)
Q Consensus 83 ~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I--lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aD 159 (384)
-|.+|.+.| +.+-+-+...|+++|++|.|.| ++|=.-=-+.-| .+..-.=..+.++|++.++.|.+. .=
T Consensus 11 g~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~g-----g~~Rm~~p~~I~aIk~~V~iPVigk~R 82 (293)
T PRK04180 11 GFAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAG-----GVARMADPKMIEEIMDAVSIPVMAKAR 82 (293)
T ss_pred HHHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcC-----CeeecCCHHHHHHHHHhCCCCeEEeeh
Confidence 366777666 6667778899999999999987 343111112222 111111134556888888888443 33
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc---chHHHHHHHHHc-CCceeeeccCCcccccc-cCCccccCCC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVEA-GIAVMGHVGLTPQAISV-LGGFRPQGKN 234 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~---e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~-lgGfrvqGrt 234 (384)
.. | ..++ +.+.+.|+|.| |.++ -.-+.+..+... ++|+|.-+.=...-... --|+-.++.|
T Consensus 83 ig---h---~~Ea-----~~L~~~GvDiI---D~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 83 IG---H---FVEA-----QILEALGVDYI---DESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred hh---H---HHHH-----HHHHHcCCCEE---eccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeecc
Confidence 33 2 2233 44558999999 3321 111333333332 88888643322211111 1244444433
Q ss_pred -------HHHH----HHHHHHHHHHHHcCCcEEE----ecCCCHHHHHHHHhhcCCCEE--EEcCC-----------CCC
Q 016682 235 -------VTSA----VKVVETALALQEVGCFSVV----LECVPPPVAAAATSALQIPTI--GIGAG-----------PFC 286 (384)
Q Consensus 235 -------~~~a----~~ll~rAkAleeAGAf~Iv----lE~Vp~ela~~It~~l~IPtI--GIGAG-----------~~c 286 (384)
-.+| +.+..+.+.|.-.=-+-+. ...++-++++++.+.+++|++ .+|.= .+|
T Consensus 149 ge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GA 228 (293)
T PRK04180 149 GEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGA 228 (293)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCC
Confidence 0111 2222222222111111111 134678899999999999998 55532 247
Q ss_pred CchhhhHhhhhcC
Q 016682 287 SGQVLVYHDLLGM 299 (384)
Q Consensus 287 DGQvLV~~DlLG~ 299 (384)
|| |.|...++..
T Consensus 229 dg-VaVGSaI~ks 240 (293)
T PRK04180 229 DG-VFVGSGIFKS 240 (293)
T ss_pred CE-EEEcHHhhcC
Confidence 77 4566666543
No 145
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.00 E-value=0.2 Score=48.97 Aligned_cols=146 Identities=26% Similarity=0.328 Sum_probs=81.3
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHH-hCCCEEEeCC---Cc---c---chHHHHHHHHHcCCceeeeccCCccccccc
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKE-GGMDAIKLEG---GS---P---SRITAARGIVEAGIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~ke-aGAdaVKLEg---g~---~---e~~~~I~alv~aGIPV~gHiGLtPQ~~~~l 225 (384)
+.-++- |.+ |.++|++.| |+-+| .|-+-||||= .. + |..+.-+.|++.|.-|+-- +
T Consensus 65 lLPNTa-Gc~--tA~EAv~~A-~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY----------~ 130 (247)
T PF05690_consen 65 LLPNTA-GCR--TAEEAVRTA-RLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY----------C 130 (247)
T ss_dssp EEEE-T-T-S--SHHHHHHHH-HHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEE----------E
T ss_pred ECCcCC-CCC--CHHHHHHHH-HHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeec----------C
Confidence 445654 455 899999988 55555 4789999992 21 3 3344445566788877631 1
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHhhcCCCEE---EEcCCC--------C
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTI---GIGAGP--------F 285 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp---------~ela~~It~~l~IPtI---GIGAG~--------~ 285 (384)
++| +--|+.|+++||-+|..=+-| .+.++.|.++++||+| |||..+ +
T Consensus 131 --------~~D-----~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG 197 (247)
T PF05690_consen 131 --------TDD-----PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (247)
T ss_dssp ---------S------HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT
T ss_pred --------CCC-----HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC
Confidence 111 336899999999998865543 6888999999999999 666654 4
Q ss_pred CCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCC
Q 016682 286 CSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPS 343 (384)
Q Consensus 286 cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~ 343 (384)
||| |||-.-+.-- ....+.++ .+..|+.+-+..-.+|.-|..+
T Consensus 198 ~da-VLvNTAiA~A-------~dPv~MA~-------Af~~AV~AGR~a~~AG~~~~~~ 240 (247)
T PF05690_consen 198 ADA-VLVNTAIAKA-------KDPVAMAR-------AFKLAVEAGRLAYLAGRMPKRE 240 (247)
T ss_dssp -SE-EEESHHHHTS-------SSHHHHHH-------HHHHHHHHHHHHHHH-------
T ss_pred Cce-eehhhHHhcc-------CCHHHHHH-------HHHHHHHHHHHHHHcCCCccCC
Confidence 777 5555544321 12233444 3445666666666666666543
No 146
>PRK07534 methionine synthase I; Validated
Probab=94.98 E-value=0.46 Score=48.12 Aligned_cols=159 Identities=20% Similarity=0.200 Sum_probs=88.0
Q ss_pred HcCCCEEEecchhhhh--hccCCCCcCCCHHHHHHHHHHHHccc-----CCCcEEEeCC-CCCCc-----CCHHHHHH--
Q 016682 110 SAGIDICLVGDSAAMV--VHGHDTTLPITLEEMLVHCRAVARGA-----KRPLLVGDLP-FGTYE-----SSTNQAVD-- 174 (384)
Q Consensus 110 ~AGiD~IlVGDSl~mv--~lG~~dT~~VtldeMl~h~raV~Rga-----~~~~vvaDmP-fgsY~-----~s~e~av~-- 174 (384)
+||.|+|++ .+.++. .++... ..-..+++...+-.++|.+ ...+|.++|+ +|.|- .+.+++.+
T Consensus 56 ~AGAdiI~T-nTy~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~ 133 (336)
T PRK07534 56 DAGSDIILT-NSFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAF 133 (336)
T ss_pred HhcCCEEEe-cCcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHH
Confidence 678999984 344333 222222 1112345544333333322 2467889994 45431 23443322
Q ss_pred -HHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHc
Q 016682 175 -TAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (384)
Q Consensus 175 -nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA 251 (384)
--.+.+.++|+|.+-+|=-. .|....++++.+.++||+..+=+ + .+|...-|-+.+++.+.++. ..+
T Consensus 134 ~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~--~----~~g~l~~G~~~~~~~~~~~~----~~~ 203 (336)
T PRK07534 134 HEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSF--D----TAGRTMMGLTPADLADLVEK----LGE 203 (336)
T ss_pred HHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEE--C----CCCeeCCCCcHHHHHHHHHh----cCC
Confidence 22344557999999999542 56666777777789999865322 1 23455567665555444432 133
Q ss_pred CCcEEEecCCC-HH-HHHHHH----hhcCCCEEEE
Q 016682 252 GCFSVVLECVP-PP-VAAAAT----SALQIPTIGI 280 (384)
Q Consensus 252 GAf~IvlE~Vp-~e-la~~It----~~l~IPtIGI 280 (384)
++++|-+=|.. ++ +.+.+- ..+++|++..
T Consensus 204 ~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vy 238 (336)
T PRK07534 204 PPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAK 238 (336)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 55999999995 44 434432 3346787766
No 147
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.98 E-value=1.3 Score=44.25 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=91.2
Q ss_pred cEEEEecCC--hHHHHHHHHcCCCEEEecchhhhh-hccCCC----------------C-cCCCHHHHHHHHHHHHcccC
Q 016682 93 PITMVTAYD--YPSAVHLDSAGIDICLVGDSAAMV-VHGHDT----------------T-LPITLEEMLVHCRAVARGAK 152 (384)
Q Consensus 93 ~I~mlTAyD--~~sA~iae~AGiD~IlVGDSl~mv-~lG~~d----------------T-~~VtldeMl~h~raV~Rga~ 152 (384)
||..-...| ....+.+.++|+.++.++ |+..- ..|++. + ....++..+...+.... .+
T Consensus 51 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~k-tit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~-~~ 128 (327)
T cd04738 51 PVGLAAGFDKNAEAIDALLALGFGFVEVG-TVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRP-RG 128 (327)
T ss_pred CCEeCcCCCCCHHHHHHHHHCCCcEEEEe-ccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhcc-CC
Confidence 554443344 333344557899998887 33321 223321 0 13346777766665433 34
Q ss_pred CCcEEEeCCCCCC---cCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------cchHHHHHHHHHc------CCce
Q 016682 153 RPLLVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGGS------------PSRITAARGIVEA------GIAV 211 (384)
Q Consensus 153 ~~~vvaDmPfgsY---~~s~e~av~nA~rl~keaGAdaVKLEgg~------------~e~~~~I~alv~a------GIPV 211 (384)
.| +++.+-..++ ....++..+.+.++- .+||++-|.=+. +...+.++++++. .+||
T Consensus 129 ~p-livsi~g~~~~~~~~~~~d~~~~~~~~~--~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv 205 (327)
T cd04738 129 GP-LGVNIGKNKDTPLEDAVEDYVIGVRKLG--PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPL 205 (327)
T ss_pred Ce-EEEEEeCCCCCcccccHHHHHHHHHHHH--hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCe
Confidence 45 6677632122 122444444333322 238887663211 2344556666653 2888
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC-C------------------------C--HH
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-V------------------------P--PP 264 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~-V------------------------p--~e 264 (384)
.-=+ +|. -+. +++.+-+++++++||++|.+-. + | -+
T Consensus 206 ~vKl--~~~------------~~~---~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~ 268 (327)
T cd04738 206 LVKI--APD------------LSD---EELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTE 268 (327)
T ss_pred EEEe--CCC------------CCH---HHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHH
Confidence 7432 221 122 3566778899999999999643 1 1 36
Q ss_pred HHHHHHhhc--CCCEEEEc
Q 016682 265 VAAAATSAL--QIPTIGIG 281 (384)
Q Consensus 265 la~~It~~l--~IPtIGIG 281 (384)
.++.+.+.+ ++|+||.|
T Consensus 269 ~v~~l~~~~~~~ipIi~~G 287 (327)
T cd04738 269 VLRELYKLTGGKIPIIGVG 287 (327)
T ss_pred HHHHHHHHhCCCCcEEEEC
Confidence 678888888 79988766
No 148
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=94.97 E-value=3.3 Score=39.11 Aligned_cols=142 Identities=23% Similarity=0.233 Sum_probs=94.1
Q ss_pred hCCCcEEEEecCChHHH----HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCC
Q 016682 89 KNGEPITMVTAYDYPSA----VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164 (384)
Q Consensus 89 ~~g~~I~mlTAyD~~sA----~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgs 164 (384)
.+.+-+.++...|..-+ ..+-+.|+.++=+...- +-. ....+.+++..+.+++++ -|+
T Consensus 8 ~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~-----------~~~----~~~i~~l~~~~~~~~~iG---aGT 69 (206)
T PRK09140 8 TKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNS-----------PDP----FDSIAALVKALGDRALIG---AGT 69 (206)
T ss_pred HhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC-----------ccH----HHHHHHHHHHcCCCcEEe---EEe
Confidence 44457777777776544 44556799999654322 111 235566776666554443 367
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHH
Q 016682 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET 244 (384)
Q Consensus 165 Y~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~r 244 (384)
. .+.+++ +...++||+.+..-+- ..+.+++....|+++. .| ..|.++
T Consensus 70 V-~~~~~~-----~~a~~aGA~fivsp~~---~~~v~~~~~~~~~~~~------------~G-----~~t~~E------- 116 (206)
T PRK09140 70 V-LSPEQV-----DRLADAGGRLIVTPNT---DPEVIRRAVALGMVVM------------PG-----VATPTE------- 116 (206)
T ss_pred c-CCHHHH-----HHHHHcCCCEEECCCC---CHHHHHHHHHCCCcEE------------cc-----cCCHHH-------
Confidence 7 688877 3444799999988443 4577888888888764 11 234433
Q ss_pred HHHHHHcCCcEEEe---cCCCHHHHHHHHhhcC--CCEEEEc
Q 016682 245 ALALQEVGCFSVVL---ECVPPPVAAAATSALQ--IPTIGIG 281 (384)
Q Consensus 245 AkAleeAGAf~Ivl---E~Vp~ela~~It~~l~--IPtIGIG 281 (384)
+....++||+.|-+ +.+..+..+.+.+.++ +|++.||
T Consensus 117 ~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvvaiG 158 (206)
T PRK09140 117 AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFAVG 158 (206)
T ss_pred HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEEEC
Confidence 33344689999976 5667888899999884 9999998
No 149
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=94.94 E-value=1.1 Score=39.75 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=51.2
Q ss_pred HHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 180 LKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 180 ~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
..+.|+++|+++.. ......++.+...+..+. . ...|. ++++.+.+.|+|.|++-
T Consensus 68 a~~~g~~~vh~~~~-~~~~~~~~~~~~~~~~~g---------------~--~~~t~-------~~~~~~~~~g~d~i~~~ 122 (196)
T cd00564 68 ALAVGADGVHLGQD-DLPVAEARALLGPDLIIG---------------V--STHSL-------EEALRAEELGADYVGFG 122 (196)
T ss_pred HHHcCCCEEecCcc-cCCHHHHHHHcCCCCEEE---------------e--eCCCH-------HHHHHHhhcCCCEEEEC
Confidence 34689999999975 334455555554443221 0 11232 45566778899999874
Q ss_pred CC-------------CHHHHHHHHhhcCCCEEEEcCC
Q 016682 260 CV-------------PPPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 260 ~V-------------p~ela~~It~~l~IPtIGIGAG 283 (384)
.+ ..+.++.+.+..++|++..|+=
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi 159 (196)
T cd00564 123 PVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI 159 (196)
T ss_pred CccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC
Confidence 32 2477788888889999988743
No 150
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=94.94 E-value=0.43 Score=51.88 Aligned_cols=165 Identities=22% Similarity=0.227 Sum_probs=101.8
Q ss_pred EEecCChHHHHHHHHcCCCEEEecch-hhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC---CCCCCcCCHHH
Q 016682 96 MVTAYDYPSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL---PFGTYESSTNQ 171 (384)
Q Consensus 96 mlTAyD~~sA~iae~AGiD~IlVGDS-l~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm---PfgsY~~s~e~ 171 (384)
|.|..-..-|..++++|++.|=+|.. --.+++.+-+. +-....+.+++..++..+.+=+ -.-+|..-+++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~e------dp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~ 96 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNE------DPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDD 96 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCc------cHHHHHHHHHHhCCCCEEEEEeccccccccccccch
Confidence 44444455778899999999955421 11122222221 2244556666665554333221 12245444677
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHH
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAl 248 (384)
+++.-++...+.|++.|.+-+.. ..+...|+.+.+.|..|.+-|..|- +- + ...+.+++-++.+
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~------~p-----~--~t~~~~~~~a~~l 163 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTT------SP-----V--HTIEKYVELAKEL 163 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEecc------CC-----C--CCHHHHHHHHHHH
Confidence 77766666668999999998763 4456677888889988876654332 00 1 1246778888999
Q ss_pred HHcCCcEEEec---C--CC---HHHHHHHHhhcCCCEEEE
Q 016682 249 QEVGCFSVVLE---C--VP---PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 249 eeAGAf~IvlE---~--Vp---~ela~~It~~l~IPtIGI 280 (384)
+++||+.|.+- + .| .++.+.|.+++++| |+|
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~p-i~~ 202 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLP-VQL 202 (592)
T ss_pred HHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCe-EEE
Confidence 99999999986 2 24 35566666667766 455
No 151
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.94 E-value=0.51 Score=43.88 Aligned_cols=136 Identities=16% Similarity=0.084 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
-.|+..+++|+|.|-+=|--++. .=+ ....+.|++.++.|+++.| |-.+++++ +...+
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~~--------~g~----~~~~~~i~~~v~iPi~~~~-----~i~~~~~v-----~~~~~ 92 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKYF--------QGS----LEDLRAVREAVSLPVLRKD-----FIIDPYQI-----YEARA 92 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCcccc--------CCC----HHHHHHHHHhcCCCEEECC-----eecCHHHH-----HHHHH
Confidence 35778899999999543221111 011 2355666666677866543 43456554 44447
Q ss_pred hCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 183 GGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 183 aGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
+|||+|.|=.-. ++..+.++.....|+.++. . + .+. ++++...+.|++.+-+=
T Consensus 93 ~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v----------~-----v--~~~-------~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 93 AGADAVLLIVAALDDEQLKELYELARELGMEVLV----------E-----V--HDE-------EELERALALGAKIIGIN 148 (217)
T ss_pred cCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEE----------E-----E--CCH-------HHHHHHHHcCCCEEEEe
Confidence 999999973210 1223333333444544321 0 0 122 23566677899987433
Q ss_pred -------CCCHHHHHHHHhhc--CCCEEEEcCCC
Q 016682 260 -------CVPPPVAAAATSAL--QIPTIGIGAGP 284 (384)
Q Consensus 260 -------~Vp~ela~~It~~l--~IPtIGIGAG~ 284 (384)
....+..+++.+.+ ++|++.+|...
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~ 182 (217)
T cd00331 149 NRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS 182 (217)
T ss_pred CCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 22346678888875 68999887664
No 152
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=94.93 E-value=0.16 Score=54.29 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=61.7
Q ss_pred CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhh----h-hccCCCCcCCCHHHHHHHHHHHHccc-------------
Q 016682 90 NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----V-VHGHDTTLPITLEEMLVHCRAVARGA------------- 151 (384)
Q Consensus 90 ~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~m----v-~lG~~dT~~VtldeMl~h~raV~Rga------------- 151 (384)
++.+....++.|.....-+. +|.+.|.|.-...+ . --=+||-..-+++-+-..++.|-++-
T Consensus 56 ~~~~~~t~g~~~p~~~~q~~-~~l~~iYvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~ 134 (526)
T PF00463_consen 56 NGYVSHTGGATDPQQVQQMA-KGLEAIYVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLS 134 (526)
T ss_dssp SSSEEEEBBSSHHHHHHHHH-CT-SSEEE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCS
T ss_pred cCCcceecccccHHHHHHHH-hcCCeEEeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 46677777888887777654 79999965432221 1 23356666555555444444332210
Q ss_pred ------------C-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeecc
Q 016682 152 ------------K-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVG 216 (384)
Q Consensus 152 ------------~-~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiG 216 (384)
+ ..+||||-.. || ..+..+++-+..++ |+||.||+|||+. .|-.=|||.|
T Consensus 135 ~~~~~r~~~~~~Dyl~PIIADad~-Gf-GG~~~v~kL~K~fi-EaGaAgiH~EDQ~------------~~~KKCGH~~ 197 (526)
T PF00463_consen 135 MTKEERAKTPYIDYLRPIIADADA-GF-GGLTAVMKLTKLFI-EAGAAGIHFEDQL------------SGEKKCGHMG 197 (526)
T ss_dssp TTSTTHTTS--S-SS--EEEE-TT-TS-SSHHHHHHHHHHHH-HHT-SEEEEESB-------------GGG-B-STTS
T ss_pred ccchhhcccCcccceeeeeecccc-CC-CCHHHHHHHHHHHH-hcCCceechhhcc------------ccccceeccC
Confidence 0 1357866664 55 36677888777777 7999999999982 2446799955
No 153
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.92 E-value=1 Score=43.73 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCCcEE-Ee--CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC---CC--ccchHHHHHHHH----HcCCceeeeccCCc
Q 016682 152 KRPLLV-GD--LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE---GG--SPSRITAARGIV----EAGIAVMGHVGLTP 219 (384)
Q Consensus 152 ~~~~vv-aD--mPfgsY~~s~e~av~nA~rl~keaGAdaVKLE---gg--~~e~~~~I~alv----~aGIPV~gHiGLtP 219 (384)
+.++++ .| .+|+....+ +.-+..+.+.+ +.||++|.+= |. ..+..+.+++++ +.|+|++.+.. |
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~-~~~~~~ve~A~-~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~--~ 148 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPND-KVLVGTVEEAI-KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMY--P 148 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCc-ceeeecHHHHH-HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEe--c
Confidence 344444 34 555432222 33333445666 6899998874 22 123444444444 36999997631 1
Q ss_pred ccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEEcCCCC
Q 016682 220 QAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 220 Q~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGIGAG~~ 285 (384)
.|...-.+.+. +.+.+.++...++|||.|=..-.+ .+..+++++..++|+..+| |..
T Consensus 149 -----~g~~~e~~~~~---~~i~~a~~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~ipV~a~G-Gi~ 206 (267)
T PRK07226 149 -----RGPGIKNEYDP---EVVAHAARVAAELGADIVKTNYTGDPESFREVVEGCPVPVVIAG-GPK 206 (267)
T ss_pred -----CCCccCCCccH---HHHHHHHHHHHHHCCCEEeeCCCCCHHHHHHHHHhCCCCEEEEe-CCC
Confidence 11110011222 344555677789999999877443 6888899988899998888 444
No 154
>PLN02417 dihydrodipicolinate synthase
Probab=94.92 E-value=0.26 Score=48.15 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=53.8
Q ss_pred CCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCC
Q 016682 160 LPFG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgG 227 (384)
+||. ..+.+.+..-+++..++ +.|+++|-+-|.. +|....++..++ .++||+.|+|=+
T Consensus 11 TPf~~~g~iD~~~~~~~i~~l~-~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~--------- 80 (280)
T PLN02417 11 TPYLPDGRFDLEAYDSLVNMQI-ENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN--------- 80 (280)
T ss_pred CCcCCCCCcCHHHHHHHHHHHH-HcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc---------
Confidence 4552 23456776666666677 6899999998753 566666666664 458998875521
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
..++.++.++..+++|||++++-
T Consensus 81 ---------~t~~~i~~a~~a~~~Gadav~~~ 103 (280)
T PLN02417 81 ---------STREAIHATEQGFAVGMHAALHI 103 (280)
T ss_pred ---------cHHHHHHHHHHHHHcCCCEEEEc
Confidence 23456677777777777777664
No 155
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=94.89 E-value=2.9 Score=44.50 Aligned_cols=228 Identities=15% Similarity=0.148 Sum_probs=122.6
Q ss_pred cceeccCchhhhhh---hhHHHhhhHHHHHHHhhhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 016682 9 KRVQVAQPKHLFKQ---TQLLVTLTQHYSRILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLR 85 (384)
Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~~~~~t~~~lr 85 (384)
-++.++-|-++|.. .|+|-.++-..+-|..++.++-... .++++. ...+.|| +.-++.+|
T Consensus 90 ~~v~IayP~~~f~~~~l~~lLt~i~GN~~gm~~~~~irL~Dl-~lP~~~---------~~~F~GP-------~fGi~GiR 152 (468)
T PRK04208 90 YYAFIAYPLDLFEEGSIPNLLASIAGNVFGFKAVKALRLEDI-RFPVAY---------VKTFKGP-------PFGIQVER 152 (468)
T ss_pred EEEEEEechHhcCCCcHHHHHHHHhhhccccccccceEEEEe-cCCHHH---------HhcCCCC-------CCCchhHH
Confidence 36889999999876 7777777665443322222221000 011111 1223343 35566666
Q ss_pred Hhh-hCCCcEEEEecC------ChHHHHHHH---HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH-Hcc---c
Q 016682 86 QKH-KNGEPITMVTAY------DYPSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV-ARG---A 151 (384)
Q Consensus 86 ~~k-~~g~~I~mlTAy------D~~sA~iae---~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV-~Rg---a 151 (384)
++. ..++||++-..- =...|+++. ..|+|+|==- -+..|...-.++|-+..|..+ .|+ +
T Consensus 153 ~~lgv~~RPL~gtiiKP~~GLsp~~~a~~~y~~~~GGvD~IKDD-------E~l~~q~f~p~~~Rv~~~~~a~~~a~~eT 225 (468)
T PRK04208 153 ERLDKYGRPLLGTTPKPKLGLSAKNYGRVVYEALRGGLDFTKDD-------ENLNSQPFNRWRDRFLFVMEAIDKAEAET 225 (468)
T ss_pred HHhCCCCCceEEEeeccccCCCHHHHHHHHHHHHhcCCceeeCC-------CCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence 544 356788774322 123444443 4488887321 123445567788877655544 332 2
Q ss_pred C-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH----cCCceeeeccCCcccccccC
Q 016682 152 K-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE----AGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 152 ~-~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~----aGIPV~gHiGLtPQ~~~~lg 226 (384)
. ..+..+++- ..+.++-++++.+.. +.|+.+|.+.-.. .=...++.|++ .++|+++|=-. .|
T Consensus 226 G~~k~y~~NiT----~~~~~em~~ra~~~~-e~G~~~~mv~~~~-~G~~~l~~l~~~~~~~~l~IhaHrA~-------~g 292 (468)
T PRK04208 226 GERKGHYLNVT----APTMEEMYKRAEFAK-ELGSPIVMIDVVT-AGWTALQSLREWCRDNGLALHAHRAM-------HA 292 (468)
T ss_pred CCcceEEEecC----CCCHHHHHHHHHHHH-HhCCCEEEEeccc-cccHHHHHHHHhhhcCCcEEEecCCc-------cc
Confidence 2 244445543 124789999997776 7899999987431 11233555554 49999999211 12
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhhcCCC
Q 016682 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSALQIP 276 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~l~IP 276 (384)
-|. |+....-...--+|.+.=+|||.+.+..+ +.+....+.+.+.-|
T Consensus 293 a~~---r~~~~Gis~~vl~Kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~l~~~ 345 (468)
T PRK04208 293 AFT---RNPNHGISFRVLAKLLRLIGVDHLHTGTVVGKLEGDRAEVLGYYDILRED 345 (468)
T ss_pred ccc---cCcCCCCCHHHHHHHHHHcCCCccccCCccCCccCCHHHHHHHHHHHhhh
Confidence 121 11111101111667778899999998765 245556666655433
No 156
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=94.86 E-value=1.1 Score=45.71 Aligned_cols=135 Identities=21% Similarity=0.328 Sum_probs=96.4
Q ss_pred HHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----cchHHHHHHHHHcCCceeeecc
Q 016682 141 LVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVG 216 (384)
Q Consensus 141 l~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----~e~~~~I~alv~aGIPV~gHiG 216 (384)
....+.|+++.+.| +++|+=| .|. .| ...+ +.|+|.|.|--|. +...+.|++..+.|||+ -||
T Consensus 61 A~al~~I~~~~~iP-lVADIHF-d~~----lA----l~a~-~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipI--RIG 127 (346)
T TIGR00612 61 AAAFEAIKEGTNVP-LVADIHF-DYR----LA----ALAM-AKGVAKVRINPGNIGFRERVRDVVEKARDHGKAM--RIG 127 (346)
T ss_pred HHhHHHHHhCCCCC-EEEeeCC-CcH----HH----HHHH-HhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCE--EEe
Confidence 45567788899888 9999998 563 33 3456 5899999998653 45566777777899997 467
Q ss_pred CCcccccc--cCCccccC-CCH-HHHHHHHHHHHHHHHcCCcEEEecCC----C--HHHHHHHHhhcCCCE-EEE-cCCC
Q 016682 217 LTPQAISV--LGGFRPQG-KNV-TSAVKVVETALALQEVGCFSVVLECV----P--PPVAAAATSALQIPT-IGI-GAGP 284 (384)
Q Consensus 217 LtPQ~~~~--lgGfrvqG-rt~-~~a~~ll~rAkAleeAGAf~IvlE~V----p--~ela~~It~~l~IPt-IGI-GAG~ 284 (384)
.+--+... +.- .| -|. +-.+.+++.++-+|+-|=+=|++-+= + -+.-+.++++.+-|+ +|+ =||.
T Consensus 128 VN~GSL~~~~~~k---yg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHlGVTEAG~ 204 (346)
T TIGR00612 128 VNHGSLERRLLEK---YGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHLGVTEAGM 204 (346)
T ss_pred cCCCCCcHHHHHH---cCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCceeccccCCC
Confidence 66543331 111 13 243 34477999999999999998888753 2 355677889999995 576 7999
Q ss_pred CCCchhh
Q 016682 285 FCSGQVL 291 (384)
Q Consensus 285 ~cDGQvL 291 (384)
..+|-|-
T Consensus 205 ~~~G~IK 211 (346)
T TIGR00612 205 GVKGIVK 211 (346)
T ss_pred CCCchhH
Confidence 9999773
No 157
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.85 E-value=0.21 Score=48.78 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc-CCCcEEEeCCC-CCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-~~~~vvaDmPf-gsY~~s~e~av~nA~rl~ 180 (384)
-.|+.++++|+|.+++--. .....|-++++.|.+.|+.++ +.|+++=|.|. .++..+++... +|.
T Consensus 87 ~~a~~a~~~Gad~v~~~~P---------~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~----~L~ 153 (288)
T cd00954 87 ELAKHAEELGYDAISAITP---------FYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFL----ELF 153 (288)
T ss_pred HHHHHHHHcCCCEEEEeCC---------CCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHH----HHh
Confidence 3467889999999986532 233457799999999999999 89999999994 56767877663 555
Q ss_pred HHhCCCEEEeCCCccchHHHHHHHHH
Q 016682 181 KEGGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 181 keaGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
+--...+||-+.+ . ...+..+.+
T Consensus 154 ~~pnivgiK~s~~-d--~~~~~~~~~ 176 (288)
T cd00954 154 EIPNVIGVKFTAT-D--LYDLERIRA 176 (288)
T ss_pred cCCCEEEEEeCCC-C--HHHHHHHHH
Confidence 4346889999877 3 344555543
No 158
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.85 E-value=0.37 Score=48.97 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=111.9
Q ss_pred CcEEEEecCC--hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCH
Q 016682 92 EPITMVTAYD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (384)
Q Consensus 92 ~~I~mlTAyD--~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~ 169 (384)
+-|+-..-|- ......++..|.+++-|. .-.....+...-.+-+++...+ .+ +.-++ -|.| |.
T Consensus 85 Rl~~Gtg~y~s~~~~~~a~~asg~e~vTva----~rr~~~~~~~~~~~~~~~~~~~--~~------~lpNT-ag~~--ta 149 (326)
T PRK11840 85 RLLVGTGKYKDFEETAAAVEASGAEIVTVA----VRRVNVSDPGAPMLTDYIDPKK--YT------YLPNT-AGCY--TA 149 (326)
T ss_pred ceeEecCCCCCHHHHHHHHHHhCCCEEEEE----EEeecCcCCCcchHHHhhhhcC--CE------ECccC-CCCC--CH
Confidence 3444444452 234566778899999653 1111111122122223322110 12 22333 2555 89
Q ss_pred HHHHHHHHHHHHHh-CCCEEEeCC--C----ccchHHHHHHH---HHcCCceeeeccCCcccccccCCccccCCCHHHHH
Q 016682 170 NQAVDTAVRILKEG-GMDAIKLEG--G----SPSRITAARGI---VEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 170 e~av~nA~rl~kea-GAdaVKLEg--g----~~e~~~~I~al---v~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
++|++.| |+-+|. |-+-||||= - .++..++|++. ++.|.-|+- . -..+
T Consensus 150 ~eAv~~a-~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~----------y------c~~d----- 207 (326)
T PRK11840 150 EEAVRTL-RLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV----------Y------CSDD----- 207 (326)
T ss_pred HHHHHHH-HHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE----------E------eCCC-----
Confidence 9999988 555554 779999992 1 13444555554 455876642 1 1112
Q ss_pred HHHHHHHHHHHcCCcEEEe-c-------CC-CHHHHHHHHhhcCCCEE---EEcCCC--------CCCchhhhHhhhhcC
Q 016682 240 KVVETALALQEVGCFSVVL-E-------CV-PPPVAAAATSALQIPTI---GIGAGP--------FCSGQVLVYHDLLGM 299 (384)
Q Consensus 240 ~ll~rAkAleeAGAf~Ivl-E-------~V-p~ela~~It~~l~IPtI---GIGAG~--------~cDGQvLV~~DlLG~ 299 (384)
+..|++++++||-+|.. . +| .++.++.+.+..++|+| |||.+. +||| ||+-.-+.
T Consensus 208 --~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadg-VL~nSaIa-- 282 (326)
T PRK11840 208 --PIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDG-VLMNTAIA-- 282 (326)
T ss_pred --HHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEcceec--
Confidence 45788999999944443 1 34 48889999999999988 555554 3666 44444222
Q ss_pred CCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCC
Q 016682 300 MQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPSH 344 (384)
Q Consensus 300 ~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h 344 (384)
. ++.-....+.+..|+.+=+..-.+|.-|...+
T Consensus 283 -~-----------a~dPv~Ma~A~~~av~aGr~a~~ag~~~~~~~ 315 (326)
T PRK11840 283 -E-----------AKNPVLMARAMKLAVEAGRLAYLAGRMPRRRY 315 (326)
T ss_pred -c-----------CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 1 12223455666777777777778888886543
No 159
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.82 E-value=0.27 Score=48.46 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 79 ~t~~~lr~~k~~-g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
.+...++++++. +.|+++=.+-+...|+.+.++|+|.|.|+...|.. .++.+.+++-+....+.+.. +.| |+
T Consensus 159 ~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~----~~~g~~~~~~l~~i~~~~~~--~ip-vi 231 (299)
T cd02809 159 LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ----LDGAPATIDALPEIVAAVGG--RIE-VL 231 (299)
T ss_pred CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC----CCCCcCHHHHHHHHHHHhcC--CCe-EE
Confidence 456677777654 57888888888899999999999999887555432 23445555544443333321 244 78
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
+| |+. .+..+++ +.+ ..||++|.+
T Consensus 232 a~---GGI-~~~~d~~----kal-~lGAd~V~i 255 (299)
T cd02809 232 LD---GGI-RRGTDVL----KAL-ALGADAVLI 255 (299)
T ss_pred Ee---CCC-CCHHHHH----HHH-HcCCCEEEE
Confidence 88 777 4777774 566 489999999
No 160
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.82 E-value=0.43 Score=47.62 Aligned_cols=99 Identities=23% Similarity=0.339 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCc---------------------------cchHHHHHHHHHc---CCceeeeccCCcc
Q 016682 171 QAVDTAVRILKEGGMDAIKLEGGS---------------------------PSRITAARGIVEA---GIAVMGHVGLTPQ 220 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEgg~---------------------------~e~~~~I~alv~a---GIPV~gHiGLtPQ 220 (384)
+.++.|.+.. ++|.|+|+|-++. ....+.|++++++ ++||..- ++|.
T Consensus 155 ~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vr--i~~~ 231 (336)
T cd02932 155 AFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVR--ISAT 231 (336)
T ss_pred HHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEE--Eccc
Confidence 3445555554 7999999998530 1124666666653 5676643 2221
Q ss_pred cccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec----------CC-C---HHHHHHHHhhcCCCEEEEc
Q 016682 221 AISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE----------CV-P---PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 221 ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE----------~V-p---~ela~~It~~l~IPtIGIG 281 (384)
++.-.|-+. ++.++-++.++++|.|.|-+- .+ + .+.++.|.+.+++|+++-|
T Consensus 232 ------~~~~~g~~~---~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 297 (336)
T cd02932 232 ------DWVEGGWDL---EDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVG 297 (336)
T ss_pred ------ccCCCCCCH---HHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeC
Confidence 111234443 466778888999999987641 22 2 4778899999999988543
No 161
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.81 E-value=1.7 Score=44.63 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=77.9
Q ss_pred HHHHHcccCCCcEEEeC-CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc-----C-
Q 016682 144 CRAVARGAKRPLLVGDL-PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA-----G- 208 (384)
Q Consensus 144 ~raV~Rga~~~~vvaDm-PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a-----G- 208 (384)
+|.+...-++|++..=+ |-+ +.|+++..+.+.+++ ++|+|+||.-+.. +|..+.++..++. |
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~--gld~~~la~~~~~l~-~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~ 197 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSI--GLSPEELAELAYELA-LGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGR 197 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCC--CCCHHHHHHHHHHHH-hcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 35555666788766422 333 468999999999999 5999999987652 4455555555531 1
Q ss_pred -CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcCCCEEEEcCC
Q 016682 209 -IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 209 -IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~IPtIGIGAG 283 (384)
.++++ +-|.. .++++++|+..+++||+++++-... -...+.+.+.-++|+.+-=++
T Consensus 198 ~~~y~~------------------nit~~-~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~ 256 (367)
T cd08205 198 KTLYAP------------------NITGD-PDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAF 256 (367)
T ss_pred cceEEE------------------EcCCC-HHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEccCc
Confidence 11111 11222 3799999999999999999887653 233455566668999987444
No 162
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.80 E-value=0.33 Score=50.61 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHH
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e 170 (384)
-+|++-++=++..|+.+.++|+|+|.||-..+...-+..- ...++.-..+..++.+++..+.| |++| |++ .++.
T Consensus 195 ~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vp-VIAd---GGI-~~~~ 269 (404)
T PRK06843 195 LDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNIC-IIAD---GGI-RFSG 269 (404)
T ss_pred CcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCe-EEEe---CCC-CCHH
Confidence 4567779999999999999999999988554443222211 11222222344455666666666 8999 777 4788
Q ss_pred HHHHHHHHHHHHhCCCEEEeC
Q 016682 171 QAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLE 191 (384)
++ .+.+ ..||++|.+-
T Consensus 270 Di----~KAL-alGA~aVmvG 285 (404)
T PRK06843 270 DV----VKAI-AAGADSVMIG 285 (404)
T ss_pred HH----HHHH-HcCCCEEEEc
Confidence 87 4577 5999999993
No 163
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=94.79 E-value=4 Score=43.10 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=108.3
Q ss_pred HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 016682 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (384)
Q Consensus 106 ~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGA 185 (384)
+.+-++|+|++-+-|++.-.- .+.+++..++. .|.. .-+....-++.+ .+++-.++.+.++. +.||
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~---------n~~~~v~~ak~--~G~~-v~~~i~~t~~p~-~~~~~~~~~a~~l~-~~Ga 168 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVR---------NLETAVKATKK--AGGH-AQVAISYTTSPV-HTIDYFVKLAKEMQ-EMGA 168 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHH---------HHHHHHHHHHH--cCCe-EEEEEEeecCCC-CCHHHHHHHHHHHH-HcCC
Confidence 456688999998888875541 24444433321 2321 111112222334 47888888888876 7999
Q ss_pred CEEEeCCCc-----cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 186 DAIKLEGGS-----PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 186 daVKLEgg~-----~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
+.|.|-|-. ....+.|++|.+ .++|+--| ..+..| . .+.-+.+-.+|||+.|=.
T Consensus 169 d~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H------~Hnt~G-l------------A~AN~laAieaGad~vD~- 228 (448)
T PRK12331 169 DSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVH------THATSG-I------------AEMTYLKAIEAGADIIDT- 228 (448)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEE------ecCCCC-c------------HHHHHHHHHHcCCCEEEe-
Confidence 999999852 456677777775 37888877 223332 1 233455567899986431
Q ss_pred CCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCC
Q 016682 260 CVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSF 339 (384)
Q Consensus 260 ~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~F 339 (384)
++. | +|=|+|+.+=-+++..-.-.|... +.- ..+..++.+.+.+--+.|.+ ++.|
T Consensus 229 sv~-------------g-lg~gaGN~~tE~lv~~L~~~g~~t-----gid---l~~L~~~~~~~~~~r~~y~~---~~~~ 283 (448)
T PRK12331 229 AIS-------------P-FAGGTSQPATESMVAALQDLGYDT-----GLD---LEELSEIAEYFNPIRDHYRE---EGIL 283 (448)
T ss_pred ecc-------------c-cCCCcCCHhHHHHHHHHHhcCCCC-----CCC---HHHHHHHHHHHHHHHHHHHh---hccC
Confidence 111 2 222455444333333222235431 110 12233333333333344542 2333
Q ss_pred C------CCCCCCccCChhhHHHHHHHHHhcChh
Q 016682 340 P------GPSHSPYKMSSSDCNGFFNELQKLGFD 367 (384)
Q Consensus 340 P------~~~h~~y~~~~~e~~~f~~~~~~~~~~ 367 (384)
| +.....|.|+-..+.-+...+++.|+.
T Consensus 284 ~~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~ 317 (448)
T PRK12331 284 NPKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAE 317 (448)
T ss_pred CcccccCCcCeeecCCCcchHhHHHHHHHHCCcH
Confidence 3 333333567767777777777766653
No 164
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.79 E-value=0.35 Score=52.49 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=94.0
Q ss_pred HHHHHHHHcCCCEEEecch-hhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE--e-CCCCCCcCCHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDS-AAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG--D-LPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDS-l~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva--D-mPfgsY~~s~e~av~nA~r 178 (384)
.-|..++++|++.|=+|.. --.+++.+-+- +-.|.+ +.+++..++..+.+ - .-.-+|..-++++++.-++
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e---~~~e~l---~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDACIRFLNE---DPWERL---RELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred HHHHHHHHcCCCEEEecCCcccccccccCCC---CHHHHH---HHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 3577789999999965511 11111111111 123344 44444444332321 1 1123565557788887777
Q ss_pred HHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 179 ILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 179 l~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
...+.|+|.|.+-+.. +.+...|+.+.+.|..|.+-|..+- .. + ...+.+++-++.++++||+.
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-----~p------~--~~~~~~~~~~~~~~~~Gad~ 165 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT-----SP------V--HTLETYLDLAEELLEMGVDS 165 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc-----CC------C--CCHHHHHHHHHHHHHcCCCE
Confidence 7668999999998653 4566778888889988876543221 00 0 12456788888999999999
Q ss_pred EEec-C--C--C---HHHHHHHHhhcCCC
Q 016682 256 VVLE-C--V--P---PPVAAAATSALQIP 276 (384)
Q Consensus 256 IvlE-~--V--p---~ela~~It~~l~IP 276 (384)
|.+- . + | .++.+.|.+++++|
T Consensus 166 I~i~Dt~G~~~P~~v~~lv~~lk~~~~~p 194 (582)
T TIGR01108 166 ICIKDMAGILTPKAAYELVSALKKRFGLP 194 (582)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhCCCc
Confidence 9886 2 2 5 35566666667777
No 165
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.78 E-value=0.57 Score=49.80 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=45.1
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
.+...+..+-++|+|+|.+--+ +|+... .+...+.+++..+...|++ |+- .|++++ ..+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a-----~G~s~~-------~~~~i~~ik~~~~~~~v~a----G~V-~t~~~a----~~~ 299 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS-----QGNSIY-------QIDMIKKLKSNYPHVDIIA----GNV-VTADQA----KNL 299 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC-----CCCchH-------HHHHHHHHHhhCCCceEEE----CCc-CCHHHH----HHH
Confidence 4567888888999999976322 344332 2344566666555444555 455 577777 345
Q ss_pred HHHhCCCEEEeC
Q 016682 180 LKEGGMDAIKLE 191 (384)
Q Consensus 180 ~keaGAdaVKLE 191 (384)
+ ++|||+|++-
T Consensus 300 ~-~aGad~I~vg 310 (495)
T PTZ00314 300 I-DAGADGLRIG 310 (495)
T ss_pred H-HcCCCEEEEC
Confidence 5 7999999973
No 166
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.77 E-value=0.48 Score=46.47 Aligned_cols=141 Identities=25% Similarity=0.308 Sum_probs=82.2
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH-
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE- 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke- 182 (384)
....++.+|.+++-|.= =.-+....+-+.++.+.+. . .-.+.-+.- |.| |.++|++.| |+-+|
T Consensus 25 ~~~ai~aSg~~ivTva~-------rR~~~~~~~~~~~~~~i~~----~-~~~~lpNTa-G~~--ta~eAv~~a-~lare~ 88 (248)
T cd04728 25 MKEAIEASGAEIVTVAL-------RRVNIGDPGGESFLDLLDK----S-GYTLLPNTA-GCR--TAEEAVRTA-RLAREA 88 (248)
T ss_pred HHHHHHHhCCCEEEEEE-------EecccCCCCcchHHhhccc----c-CCEECCCCC-CCC--CHHHHHHHH-HHHHHH
Confidence 34567788999997631 1111111222333333221 1 111223332 455 899999988 44444
Q ss_pred hCCCEEEeC--C-C---ccchHHHHHHHH---HcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCC
Q 016682 183 GGMDAIKLE--G-G---SPSRITAARGIV---EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC 253 (384)
Q Consensus 183 aGAdaVKLE--g-g---~~e~~~~I~alv---~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGA 253 (384)
.|-+-|||| + . .++..++|++.. +.|.-|+- .+ ..+ +..|++++++||
T Consensus 89 ~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlp----------yc------~dd-------~~~ar~l~~~G~ 145 (248)
T cd04728 89 LGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLP----------YC------TDD-------PVLAKRLEDAGC 145 (248)
T ss_pred hCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEE----------Ee------CCC-------HHHHHHHHHcCC
Confidence 577999999 2 2 144555555544 45876651 01 111 457899999999
Q ss_pred cEEEe--c------CC-CHHHHHHHHhhcCCCEE---EEcCC
Q 016682 254 FSVVL--E------CV-PPPVAAAATSALQIPTI---GIGAG 283 (384)
Q Consensus 254 f~Ivl--E------~V-p~ela~~It~~l~IPtI---GIGAG 283 (384)
++|-. + ++ ..+.++.|.+..++|+| |||.+
T Consensus 146 ~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tp 187 (248)
T cd04728 146 AAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTP 187 (248)
T ss_pred CEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCH
Confidence 99944 2 22 47888999999999988 44444
No 167
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.74 E-value=0.2 Score=48.42 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=64.1
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~ke 182 (384)
.|+.++++|+|.|++. .|...+.+-++++.|.+.|+.+++.|+++=|.|. .++..|++.. .++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~---------~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~----~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVV---------TPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETV----LRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEc---------ccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHH----HHHhcC
Confidence 4678889999999876 2334455779999999999999999999999994 4566777755 356655
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||...+ ....+..+.+
T Consensus 154 p~v~giK~s~~---~~~~~~~~~~ 174 (284)
T cd00950 154 PNIVGIKEATG---DLDRVSELIA 174 (284)
T ss_pred CCEEEEEECCC---CHHHHHHHHH
Confidence 67899997655 2344444443
No 168
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.70 E-value=5.1 Score=39.91 Aligned_cols=214 Identities=14% Similarity=0.154 Sum_probs=128.8
Q ss_pred HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
|+..++++--+-..|+||..+++. +|+.+.++|+--.-. ...| ..++.+...++.+++.++.| |+.-
T Consensus 8 l~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~---~~~~-----~~~~~~~~~~~~~a~~~~VP-ValH 78 (282)
T TIGR01858 8 LQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPG---TFKH-----AGTEYIVALCSAASTTYNMP-LALH 78 (282)
T ss_pred HHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc---HHhh-----CCHHHHHHHHHHHHHHCCCC-EEEE
Confidence 455667888899999999999874 577899999833211 1222 34777888888888888877 7777
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHH----HHHcCCceeeeccCCccccccc--CCccc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARG----IVEAGIAVMGHVGLTPQAISVL--GGFRP 230 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~a----lv~aGIPV~gHiGLtPQ~~~~l--gGfrv 230 (384)
|.-| . |.+.. .+.+ ++|...|.+-|.. +|-++..+. +...||+|=|=||-.+-...-. .+-..
T Consensus 79 LDHg-~--~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~ 150 (282)
T TIGR01858 79 LDHH-E--SLDDI----RQKV-HAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDA 150 (282)
T ss_pred CCCC-C--CHHHH----HHHH-HcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchh
Confidence 7652 2 44443 5677 5899999997763 344444444 4458999977666544211100 00000
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-CchhhhHhhhh
Q 016682 231 QGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQVLVYHDLL 297 (384)
Q Consensus 231 qGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQvLV~~DlL 297 (384)
.=-+.++|.+.++ +-|+|+|=+= -+.-++.++|.+.+++|+. +-.|++. |=|+. --=-+
T Consensus 151 ~~T~peea~~Fv~------~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLV-lHGgSG~~~e~~~-~ai~~ 222 (282)
T TIGR01858 151 LYTDPQEAKEFVE------ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLV-LHGASDVPDEDVR-RTIEL 222 (282)
T ss_pred ccCCHHHHHHHHH------HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeE-EecCCCCCHHHHH-HHHHc
Confidence 0113344444433 5688877532 2346899999999999964 5444443 33322 11123
Q ss_pred cCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 298 GMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 298 G~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
|.. + +.-+-++.....+++++|.++
T Consensus 223 Gi~------K-----iNi~T~l~~a~~~~~~~~~~~ 247 (282)
T TIGR01858 223 GIC------K-----VNVATELKIAFSGAVKAYFAE 247 (282)
T ss_pred CCe------E-----EEeCcHHHHHHHHHHHHHHHh
Confidence 443 1 233445555566677666644
No 169
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.70 E-value=0.9 Score=45.50 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=90.7
Q ss_pred EEEecCChH----HHHHHHHcCCCEE-E-ecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcC
Q 016682 95 TMVTAYDYP----SAVHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (384)
Q Consensus 95 ~mlTAyD~~----sA~iae~AGiD~I-l-VGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~ 167 (384)
+.+-..|.. .|+++++.|+|.| + .|=... .+..|.-+...-..+.+...+++|+..++.| |.+=+- .+|..
T Consensus 69 vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~p-v~vKiR-~G~~~ 146 (321)
T PRK10415 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVP-VTLKIR-TGWAP 146 (321)
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCc-eEEEEE-ccccC
Confidence 345444443 3677778999999 3 553322 2334444545556677778888888887666 443332 23433
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCc-------cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
+.++.++-+.++ ++.|+++|-+.|.. ....+.|+.+.+ .+|||+|. ||. +|.+++.
T Consensus 147 ~~~~~~~~a~~l-e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~n-----------GgI----~s~~da~ 210 (321)
T PRK10415 147 EHRNCVEIAQLA-EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIAN-----------GDI----TDPLKAR 210 (321)
T ss_pred CcchHHHHHHHH-HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEe-----------CCC----CCHHHHH
Confidence 444566655554 47999999887642 123466677665 58999874 443 3555555
Q ss_pred HHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHh
Q 016682 240 KVVETALALQEVGCFSVVLE--CV-PPPVAAAATS 271 (384)
Q Consensus 240 ~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~ 271 (384)
+++ ++.|||+|.+= .+ .+-+.+.|.+
T Consensus 211 ~~l------~~~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 211 AVL------DYTGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred HHH------hccCCCEEEEChHhhcCChHHHHHHH
Confidence 444 34799988764 22 3445555544
No 170
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.68 E-value=0.4 Score=50.79 Aligned_cols=156 Identities=18% Similarity=0.160 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCCEEEecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE--eCC-CCCCcCCHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG--DLP-FGTYESSTNQAVDTAVR 178 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva--DmP-fgsY~~s~e~av~nA~r 178 (384)
.-|..++++|++.|=+|-... .++..+-+.. -.|.+ +.+++..++..+.+ --+ .-+|..-+++.++.-++
T Consensus 29 ~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~---p~e~l---~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 29 PALEAFDRMGFYSMEVWGGATFDVCVRFLNEN---PWERL---KEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhcccCCC---HHHHH---HHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 457778999999996641111 1111111111 23333 44445444433332 111 12565557777776666
Q ss_pred HHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 179 ILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 179 l~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
...+.|++.|.+-+.. +.+...|+.+.+.|..|.+-|..+= +- +. ..+.+++-++.++++||+.
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~-------~p----~~--t~e~~~~~a~~l~~~Gad~ 169 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTV-------SP----VH--TLEYYLEFARELVDMGVDS 169 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEecc-------CC----CC--CHHHHHHHHHHHHHcCCCE
Confidence 6568999999998763 3455677777889988876553221 00 11 2457888899999999999
Q ss_pred EEec---CC--C---HHHHHHHHhhcCCCE
Q 016682 256 VVLE---CV--P---PPVAAAATSALQIPT 277 (384)
Q Consensus 256 IvlE---~V--p---~ela~~It~~l~IPt 277 (384)
|.+- ++ | .++.+.|.+++++|+
T Consensus 170 I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI 199 (467)
T PRK14041 170 ICIKDMAGLLTPKRAYELVKALKKKFGVPV 199 (467)
T ss_pred EEECCccCCcCHHHHHHHHHHHHHhcCCce
Confidence 9886 22 5 456666667777773
No 171
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.67 E-value=0.78 Score=47.17 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=45.0
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
....++.+.++|+|+|.+--......++++.. ..+++....+. .+.|++.+|. .|++.+ .+++
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~---~~~~i~~~ik~----~~ipVIaG~V------~t~e~A----~~l~ 205 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEG---EPLNLKEFIYE----LDVPVIVGGC------VTYTTA----LHLM 205 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcC---CHHHHHHHHHH----CCCCEEEeCC------CCHHHH----HHHH
Confidence 45778899999999998743333333444432 34455444443 4566444343 355655 4567
Q ss_pred HHhCCCEEEeC
Q 016682 181 KEGGMDAIKLE 191 (384)
Q Consensus 181 keaGAdaVKLE 191 (384)
++|||+|++-
T Consensus 206 -~aGAD~V~VG 215 (368)
T PRK08649 206 -RTGAAGVLVG 215 (368)
T ss_pred -HcCCCEEEEC
Confidence 5999999995
No 172
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.66 E-value=0.64 Score=45.51 Aligned_cols=87 Identities=25% Similarity=0.251 Sum_probs=52.9
Q ss_pred cEEEEecCCh----HHHHHHHHcC-CCEE-E-ecchhhhhhc-cCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCC
Q 016682 93 PITMVTAYDY----PSAVHLDSAG-IDIC-L-VGDSAAMVVH-GHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGT 164 (384)
Q Consensus 93 ~I~mlTAyD~----~sA~iae~AG-iD~I-l-VGDSl~mv~l-G~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgs 164 (384)
-|+-++.+|. ..|+.++++| +|.| + ++- -.... |+. ..-+.+.+.+.+++|++.++.| |.+-|.. +
T Consensus 94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~c--P~~~~gg~~--~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~-~ 167 (301)
T PRK07259 94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISC--PNVKHGGMA--FGTDPELAYEVVKAVKEVVKVP-VIVKLTP-N 167 (301)
T ss_pred EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCC--CCCCCCccc--cccCHHHHHHHHHHHHHhcCCC-EEEEcCC-C
Confidence 3455556653 3477788899 9999 3 221 11112 111 1225677788889998887666 7777763 2
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 165 YESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 165 Y~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
.++..+.+.++ +++|+|+|-+
T Consensus 168 ----~~~~~~~a~~l-~~~G~d~i~~ 188 (301)
T PRK07259 168 ----VTDIVEIAKAA-EEAGADGLSL 188 (301)
T ss_pred ----chhHHHHHHHH-HHcCCCEEEE
Confidence 23555555454 4799999876
No 173
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.66 E-value=0.43 Score=48.88 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=48.3
Q ss_pred EEecCC--hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHH
Q 016682 96 MVTAYD--YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAV 173 (384)
Q Consensus 96 mlTAyD--~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av 173 (384)
.++..| +..+..+-++|+|+|++=-+ +| .-+.++..++.|++.-++.+|++ |+- .+.+.+
T Consensus 102 avg~~~~~~er~~~L~~agvD~ivID~a-----~g-------~s~~~~~~ik~ik~~~~~~~via----GNV-~T~e~a- 163 (352)
T PF00478_consen 102 AVGTRDDDFERAEALVEAGVDVIVIDSA-----HG-------HSEHVIDMIKKIKKKFPDVPVIA----GNV-VTYEGA- 163 (352)
T ss_dssp EEESSTCHHHHHHHHHHTT-SEEEEE-S-----ST-------TSHHHHHHHHHHHHHSTTSEEEE----EEE--SHHHH-
T ss_pred EecCCHHHHHHHHHHHHcCCCEEEcccc-----Cc-------cHHHHHHHHHHHHHhCCCceEEe----ccc-CCHHHH-
Confidence 445655 77888888999999987311 23 33456677788888888555663 233 455666
Q ss_pred HHHHHHHHHhCCCEEEeC
Q 016682 174 DTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 174 ~nA~rl~keaGAdaVKLE 191 (384)
..|+ ++|||+||+-
T Consensus 164 ---~~L~-~aGad~vkVG 177 (352)
T PF00478_consen 164 ---KDLI-DAGADAVKVG 177 (352)
T ss_dssp ---HHHH-HTT-SEEEES
T ss_pred ---HHHH-HcCCCEEEEe
Confidence 3577 6999999996
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.65 E-value=1.4 Score=42.94 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=73.9
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|+|.|=+|.-.+....++..+...+.+.+-...+ ..+ +++-+.+=.-.+.+ +.+ .+ +...+.
T Consensus 25 ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~--~~~~~~~~~~~~~~--~~~-~l----~~a~~~ 94 (266)
T cd07944 25 IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLG-DSK--GNTKIAVMVDYGND--DID-LL----EPASGS 94 (266)
T ss_pred HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHh-hhc--cCCEEEEEECCCCC--CHH-HH----HHHhcC
Confidence 366799999999988853332233333344444444332222 211 12223321111122 233 22 334578
Q ss_pred CCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 184 GMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 184 GAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
|++.|.+-... +...+.|+.+.+.|+.|+.. +... + +. ..+.+++-++.+.++|++.|.+-
T Consensus 95 gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~----~~~a-----~----~~--~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 95 VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN----LMAI-----S----GY--SDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE----EEee-----c----CC--CHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999887542 34556677777889888753 2211 1 11 24567778888889999999876
No 175
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.64 E-value=0.31 Score=47.64 Aligned_cols=168 Identities=22% Similarity=0.323 Sum_probs=111.4
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
|+.++.-|.|+ .-|+.-++.|+|=|.-=|=- +..-| -+-|++-.+.++.-.-.||.++ |
T Consensus 23 F~~lrd~GDpV--------elA~~Y~e~GADElvFlDIt-As~~g--------r~~~~~vv~r~A~~vfiPltVG----G 81 (256)
T COG0107 23 FKNLRDAGDPV--------ELAKRYNEEGADELVFLDIT-ASSEG--------RETMLDVVERVAEQVFIPLTVG----G 81 (256)
T ss_pred ccchhhcCChH--------HHHHHHHHcCCCeEEEEecc-ccccc--------chhHHHHHHHHHhhceeeeEec----C
Confidence 66666777774 56888899999988532211 11122 3446666677777666665554 5
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCccccc--ccCCcccc---CCCHHH
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAIS--VLGGFRPQ---GKNVTS 237 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~--~lgGfrvq---Grt~~~ 237 (384)
+- .|.+++ .+++ .+|||=|-|--..-+..+.|+.+.+. | .=|.-+++-+.+.. ..++|.+. ||. ..
T Consensus 82 GI-~s~eD~----~~ll-~aGADKVSINsaAv~~p~lI~~~a~~FG-sQciVvaIDakr~~~g~~~~~~v~~~gGr~-~t 153 (256)
T COG0107 82 GI-RSVEDA----RKLL-RAGADKVSINSAAVKDPELITEAADRFG-SQCIVVAIDAKRVPDGENGWYEVFTHGGRE-DT 153 (256)
T ss_pred Cc-CCHHHH----HHHH-HcCCCeeeeChhHhcChHHHHHHHHHhC-CceEEEEEEeeeccCCCCCcEEEEecCCCc-CC
Confidence 65 356655 6888 69999998865423456778888763 3 22333455554432 22334442 332 23
Q ss_pred HHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHhhcCCCEEEE
Q 016682 238 AVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 238 a~~ll~rAkAleeAGAf~IvlE~Vp---------~ela~~It~~l~IPtIGI 280 (384)
-.++++.|+.+|+.||==|+|-++. -++.+.|++.++||+|-=
T Consensus 154 ~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v~iPvIAS 205 (256)
T COG0107 154 GLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAVNIPVIAS 205 (256)
T ss_pred CcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhCCCCEEec
Confidence 4678999999999999999998874 589999999999999944
No 176
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.63 E-value=0.29 Score=47.77 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=70.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHcCCceeeeccCCcccccccCCcccc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
+||...+.+.+..-+++-+++ +.|+++|-+=|.+ +|..+.++..++.--+|+.|+|
T Consensus 10 TPf~~g~iD~~~~~~li~~l~-~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg--------------- 73 (279)
T cd00953 10 TPFTGNKIDKEKFKKHCENLI-SKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVG--------------- 73 (279)
T ss_pred cCcCCCCcCHHHHHHHHHHHH-HcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeC---------------
Confidence 677555577887878877777 6999999998763 6777777777764334665544
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEe--cC--C-C--HHH---HHHHHhhcCCCEEEEc
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVL--EC--V-P--PPV---AAAATSALQIPTIGIG 281 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~Ivl--E~--V-p--~el---a~~It~~l~IPtIGIG 281 (384)
. ..-++.++.|+..+++|||++++ +. . + +++ -+.|++ ++|++-.-
T Consensus 74 -~--~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn 128 (279)
T cd00953 74 -S--LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYN 128 (279)
T ss_pred -c--CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEe
Confidence 1 12368899999999999999997 32 2 2 233 244666 89988763
No 177
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.62 E-value=0.28 Score=48.20 Aligned_cols=98 Identities=27% Similarity=0.371 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCc---------------------------cchHHHHHHHHHc---CCceeeeccCCccc
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGS---------------------------PSRITAARGIVEA---GIAVMGHVGLTPQA 221 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~---------------------------~e~~~~I~alv~a---GIPV~gHiGLtPQ~ 221 (384)
.++.|.+. +++|+|+|.|-++. ....+.|++++++ ++||.-- +.|..
T Consensus 143 ~~~aA~~a-~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vr--is~~~ 219 (327)
T cd02803 143 FAAAARRA-KEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVR--LSADD 219 (327)
T ss_pred HHHHHHHH-HHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEE--echhc
Confidence 44455554 47999999998651 1124566666653 5666543 22211
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe------c------------CCCHHHHHHHHhhcCCCEEEEc
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL------E------------CVPPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl------E------------~Vp~ela~~It~~l~IPtIGIG 281 (384)
+.-.|-+ .++.++-++.++++|++.|-+ + ....+.++.|.+.+++|+++.|
T Consensus 220 ------~~~~g~~---~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 220 ------FVPGGLT---LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ------cCCCCCC---HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 1112234 346677888899999999853 1 1113778899999999998654
No 178
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.61 E-value=2.4 Score=45.08 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=73.6
Q ss_pred HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC--CCCCCcCCHHHHHHHHHHHHHHh
Q 016682 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL--PFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 106 ~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm--PfgsY~~s~e~av~nA~rl~kea 183 (384)
+.+-++|+|++-+-|++.- ++.|...++.+++ ... .+.+.+ -|+.. .+++..++.|.++. +.
T Consensus 102 ~~A~~~Gvd~irif~~lnd------------~~n~~~~i~~ak~-~G~-~v~~~i~~t~~p~-~t~e~~~~~a~~l~-~~ 165 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALND------------IRNLEKSIEVAKK-HGA-HVQGAISYTVSPV-HTLEYYLEFARELV-DM 165 (467)
T ss_pred HHHHHCCcCEEEEEEeCCH------------HHHHHHHHHHHHH-CCC-EEEEEEEeccCCC-CCHHHHHHHHHHHH-Hc
Confidence 5667889999999888754 3445555555543 222 233333 23222 46788888887776 79
Q ss_pred CCCEEEeCCCc-----cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 184 GMDAIKLEGGS-----PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 184 GAdaVKLEgg~-----~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
||+.|.|-|-. .+..+.|++|.+ .++|+--| ..+..| . .+.-+.+-.+|||+.|
T Consensus 166 Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H------~Hnt~G-l------------A~AN~laAieaGad~v 225 (467)
T PRK14041 166 GVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVH------SHCTTG-L------------ASLAYLAAVEAGADMF 225 (467)
T ss_pred CCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEE------ecCCCC-c------------HHHHHHHHHHhCCCEE
Confidence 99999999852 456677777775 37888777 223332 1 2334555568999864
No 179
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=94.60 E-value=2.2 Score=42.92 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCC-cCCHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTY-ESSTNQAVDTAVRI 179 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY-~~s~e~av~nA~rl 179 (384)
...-|+.+.++|+.+. +|+ .++ ++.+ .+...-.+.|++-.+.-++++.+.-... ..+. +-++.++.+
T Consensus 72 n~~La~~a~~~g~~~~-~Gs-~~~---~~~~------~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~-~~~~~~i~~ 139 (333)
T TIGR02151 72 NRNLARAARELGIPMG-VGS-QRA---ALKD------PETADTFEVVREEAPNGPLIANIGAPQLVEGGP-EEAQEAIDM 139 (333)
T ss_pred HHHHHHHHHHcCCCeE-EcC-chh---hccC------hhhHhHHHHHHHhCCCCcEEeecCchhhccccH-HHHHHHHHH
Confidence 4456778899998765 554 222 2333 2223333556663444446776632111 0112 334445566
Q ss_pred HHHhCCCEEEeC---------CCc--cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 180 LKEGGMDAIKLE---------GGS--PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 180 ~keaGAdaVKLE---------gg~--~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
+ ++.+..++|. |.. ....+.|+.+++. ++||+-. ..|+ |. ..+.|+.
T Consensus 140 i-~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK----------~~g~---g~-------~~~~a~~ 198 (333)
T TIGR02151 140 I-EADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVK----------EVGF---GI-------SKEVAKL 198 (333)
T ss_pred h-cCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEE----------ecCC---CC-------CHHHHHH
Confidence 6 4556666653 221 1233789999987 9999843 1122 22 2578899
Q ss_pred HHHcCCcEEEecC
Q 016682 248 LQEVGCFSVVLEC 260 (384)
Q Consensus 248 leeAGAf~IvlE~ 260 (384)
++++|+++|.+-+
T Consensus 199 L~~aGvd~I~Vsg 211 (333)
T TIGR02151 199 LADAGVSAIDVAG 211 (333)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999865
No 180
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.59 E-value=0.33 Score=49.23 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=56.9
Q ss_pred cEEEE-ecCChHHHHHHHHcCCCEEEecchhhhhhccCC-CCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHH
Q 016682 93 PITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTN 170 (384)
Q Consensus 93 ~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~-dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e 170 (384)
+++|. ++=+...|+.+.++|+|++.||-..|....-.. ...... +-.+...+.+++..+.| |++| |+. .++.
T Consensus 141 ~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~-~w~l~ai~~~~~~~~ip-VIAd---GGI-~~~~ 214 (326)
T PRK05458 141 TFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTG-GWQLAALRWCAKAARKP-IIAD---GGI-RTHG 214 (326)
T ss_pred CeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCC-ccHHHHHHHHHHHcCCC-EEEe---CCC-CCHH
Confidence 55666 688999999999999999999966654311110 011111 11222334444445556 8898 777 4788
Q ss_pred HHHHHHHHHHHHhCCCEEEeCC
Q 016682 171 QAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEg 192 (384)
++ .+.+ +.||++|.+-+
T Consensus 215 Di----~KaL-a~GA~aV~vG~ 231 (326)
T PRK05458 215 DI----AKSI-RFGATMVMIGS 231 (326)
T ss_pred HH----HHHH-HhCCCEEEech
Confidence 87 4677 57999999943
No 181
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.58 E-value=0.45 Score=48.64 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHc--CCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHH
Q 016682 99 AYDYPSAVHLDSA--GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTA 176 (384)
Q Consensus 99 AyD~~sA~iae~A--GiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA 176 (384)
--|+..+..+-++ |+|+|.+- +.+||.. -++...+.|++..|.++|++ |.- .+++.+
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD-----~AhGhs~-------~~i~~ik~ir~~~p~~~via----GNV-~T~e~a---- 164 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLD-----VANGYSE-------HFVEFVKLVREAFPEHTIMA----GNV-VTGEMV---- 164 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHhhCCCCeEEE----ecc-cCHHHH----
Confidence 3566777777777 49999874 2356654 35666677777778787775 344 577777
Q ss_pred HHHHHHhCCCEEEeCCC--c-----------cchHHHHHHHH----HcCCceeeeccCCcccccccCCccccCCCHHHHH
Q 016682 177 VRILKEGGMDAIKLEGG--S-----------PSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg--~-----------~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
.+++ ++|||+||+-=| + .-+...|...+ ..++||+ ..||++--|
T Consensus 165 ~~Li-~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI-----------aDGGIr~~g------- 225 (343)
T TIGR01305 165 EELI-LSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHII-----------SDGGCTCPG------- 225 (343)
T ss_pred HHHH-HcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEE-----------EcCCcCchh-------
Confidence 4577 699999998611 0 01222222222 3478887 467775443
Q ss_pred HHHHHHHHHHHcCCcEEEec
Q 016682 240 KVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 240 ~ll~rAkAleeAGAf~IvlE 259 (384)
+-+||+. +||+++.+=
T Consensus 226 ---DI~KALA-~GAd~VMlG 241 (343)
T TIGR01305 226 ---DVAKAFG-AGADFVMLG 241 (343)
T ss_pred ---HHHHHHH-cCCCEEEEC
Confidence 1355664 899999876
No 182
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.57 E-value=0.3 Score=48.10 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=60.2
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc-CCCcEEEeCCC-CCCcCCHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-~~~~vvaDmPf-gsY~~s~e~av~nA~rl~k 181 (384)
-|+.++++|+|.+++.- |--.+.+-++++.|.+.|+..+ +.|+++=|.|. -++..+++.. .|+.+
T Consensus 87 ~a~~A~~~Gad~v~v~p---------P~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l----~~L~~ 153 (294)
T TIGR02313 87 LTKFAEEAGADAAMVIV---------PYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTM----ARLRK 153 (294)
T ss_pred HHHHHHHcCCCEEEEcC---------ccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHH----HHHHh
Confidence 45888899999998763 3344557899999999999999 89999999995 3566777755 35664
Q ss_pred H-hCCCEEEeCCC
Q 016682 182 E-GGMDAIKLEGG 193 (384)
Q Consensus 182 e-aGAdaVKLEgg 193 (384)
+ -.+.+||-..+
T Consensus 154 ~~pnv~giK~ss~ 166 (294)
T TIGR02313 154 DCPNIVGAKESNK 166 (294)
T ss_pred hCCCEEEEEeCCC
Confidence 3 57899999876
No 183
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.55 E-value=0.38 Score=48.33 Aligned_cols=100 Identities=20% Similarity=0.232 Sum_probs=61.0
Q ss_pred HHHHHHhhhCC--CcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 81 LTHLRQKHKNG--EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 81 ~~~lr~~k~~g--~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
.+.++++++.. -+|.+-++-+...|+.+.++|+|+|.||=+-+....+... ....+.-..+..+...++..+.| |+
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vp-VI 201 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVP-VI 201 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCc-EE
Confidence 34455555544 3444458999999999999999999885332222211111 11222223444455555544556 77
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
+| |+. .++.++ .+.+ +.||++|.+
T Consensus 202 A~---GGI-~~~~di----~kAl-a~GA~~Vmi 225 (325)
T cd00381 202 AD---GGI-RTSGDI----VKAL-AAGADAVML 225 (325)
T ss_pred ec---CCC-CCHHHH----HHHH-HcCCCEEEe
Confidence 77 777 477777 3567 589999999
No 184
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.54 E-value=0.29 Score=47.74 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=83.4
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~ke 182 (384)
.|+.++++|+|.+++. -|.....+-++++.|.+.|+..++.|+++=|.|. .++..+++.. .++.+-
T Consensus 88 ~a~~a~~~G~d~v~~~---------pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~----~~L~~~ 154 (292)
T PRK03170 88 LTKFAEKAGADGALVV---------TPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETV----ARLAEH 154 (292)
T ss_pred HHHHHHHcCCCEEEEC---------CCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHH----HHHHcC
Confidence 4688889999999874 2334455789999999999999999999999994 4566777655 355543
Q ss_pred hCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--C
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--C 260 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~ 260 (384)
-.+.+||-..+ . ...+..+++.. |.....+. |.+ .++- ..-.+|+++.+-- +
T Consensus 155 p~v~giK~s~~-d--~~~~~~~~~~~----------~~~~~v~~-----G~d-----~~~~---~~l~~G~~G~is~~~n 208 (292)
T PRK03170 155 PNIVGIKEATG-D--LERVSELIELV----------PDDFAVYS-----GDD-----ALAL---PFLALGGVGVISVAAN 208 (292)
T ss_pred CCEEEEEECCC-C--HHHHHHHHHhC----------CCCeEEEE-----CCh-----HhHH---HHHHcCCCEEEEhHHh
Confidence 56889997655 2 34455554421 11111222 221 1111 2245899998743 4
Q ss_pred CCHHHHHHHHhhc
Q 016682 261 VPPPVAAAATSAL 273 (384)
Q Consensus 261 Vp~ela~~It~~l 273 (384)
+=+++..++.+.+
T Consensus 209 ~~P~~~~~l~~~~ 221 (292)
T PRK03170 209 VAPKEMAEMCDAA 221 (292)
T ss_pred hhHHHHHHHHHHH
Confidence 4355556666665
No 185
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.54 E-value=1.2 Score=41.55 Aligned_cols=119 Identities=25% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
++-+-+.|+|.|-+-=..+...-| ..+++....++|++.++ .|+.+ =++. ++ .+++ .+..+.|+..|+
T Consensus 75 ve~A~~~GAdevdvv~~~g~~~~~-------~~~~~~~ei~~v~~~~~g~~lkv-I~e~-~~-l~~~-~i~~a~ria~e~ 143 (203)
T cd00959 75 AREAIADGADEIDMVINIGALKSG-------DYEAVYEEIAAVVEACGGAPLKV-ILET-GL-LTDE-EIIKACEIAIEA 143 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHHhCC-------CHHHHHHHHHHHHHhcCCCeEEE-EEec-CC-CCHH-HHHHHHHHHHHh
Confidence 444557799999543222221111 23455555566666554 33322 2333 22 2444 567777887799
Q ss_pred CCCEEEeCCCcc------chHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 184 GMDAIKLEGGSP------SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 184 GAdaVKLEgg~~------e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
|||.||..-|.. +.+..++.++...+||. .-||.| | ++++..|.++||+-|
T Consensus 144 GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik-----------~aGGik----t-------~~~~l~~~~~g~~ri 200 (203)
T cd00959 144 GADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVK-----------AAGGIR----T-------LEDALAMIEAGATRI 200 (203)
T ss_pred CCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEE-----------EeCCCC----C-------HHHHHHHHHhChhhc
Confidence 999999974422 44555555555455553 346653 4 456777778888643
No 186
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.54 E-value=0.3 Score=48.20 Aligned_cols=120 Identities=18% Similarity=0.309 Sum_probs=75.7
Q ss_pred CCCHHHHHHh-----hhCCCcEEE----EecC-ChHH-----HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHH
Q 016682 78 RVTLTHLRQK-----HKNGEPITM----VTAY-DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLV 142 (384)
Q Consensus 78 ~~t~~~lr~~-----k~~g~~I~m----lTAy-D~~s-----A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~ 142 (384)
.+|++++... ...+.++++ .+.| |.-. .++++++|+|.|-.=|+ .+++.
T Consensus 57 ~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg----------------~~~~~ 120 (263)
T TIGR00222 57 PVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEGG----------------EWLVE 120 (263)
T ss_pred CcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCc----------------HhHHH
Confidence 5777765432 123456666 2566 4322 37888899999976553 45566
Q ss_pred HHHHHHcccCCCcE-------E-EeCCCCCC---cCC---HHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-c
Q 016682 143 HCRAVARGAKRPLL-------V-GDLPFGTY---ESS---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-A 207 (384)
Q Consensus 143 h~raV~Rga~~~~v-------v-aDmPfgsY---~~s---~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-a 207 (384)
..+++.+ ...|++ . +-. +|+| ..+ .+++++-|..+. ++||++|-||+= . .+..+.+++ .
T Consensus 121 ~i~~l~~-~gIpV~gHiGltPq~a~~-~ggy~~qgrt~~~a~~~i~~A~a~e-~AGA~~ivlE~v-p--~~~a~~It~~l 194 (263)
T TIGR00222 121 TVQMLTE-RGVPVVGHLGLTPQSVNI-LGGYKVQGKDEEAAKKLLEDALALE-EAGAQLLVLECV-P--VELAAKITEAL 194 (263)
T ss_pred HHHHHHH-CCCCEEEecCCCceeEee-cCCeeecCCCHHHHHHHHHHHHHHH-HcCCCEEEEcCC-c--HHHHHHHHHhC
Confidence 6666654 345644 1 221 2445 223 446777776655 899999999996 4 477888875 5
Q ss_pred CCceeeeccCCcc
Q 016682 208 GIAVMGHVGLTPQ 220 (384)
Q Consensus 208 GIPV~gHiGLtPQ 220 (384)
.||+.| ||=-|.
T Consensus 195 ~iP~iG-IGaG~~ 206 (263)
T TIGR00222 195 AIPVIG-IGAGNV 206 (263)
T ss_pred CCCEEe-eccCCC
Confidence 899998 775553
No 187
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.44 E-value=1.8 Score=42.55 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=71.7
Q ss_pred HHHhhhCCCcEEE--EecCCh------HHHHHHHHcCCCEEEecc----hhhh--hhccCCC---CcCCCHHHHHHHHHH
Q 016682 84 LRQKHKNGEPITM--VTAYDY------PSAVHLDSAGIDICLVGD----SAAM--VVHGHDT---TLPITLEEMLVHCRA 146 (384)
Q Consensus 84 lr~~k~~g~~I~m--lTAyD~------~sA~iae~AGiD~IlVGD----Sl~m--v~lG~~d---T~~VtldeMl~h~ra 146 (384)
|.++|+++++..+ +|+=|. --++.++++|+|+|=+|- .++= +.+--.. ...+++++.+..++.
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 80 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKE 80 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4556666665444 466543 235567789999996652 1110 0000000 135789999999999
Q ss_pred HH-cccCCCcEEEeCCCCCCcCCHH--HHHHHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 147 VA-RGAKRPLLVGDLPFGTYESSTN--QAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 147 V~-Rga~~~~vvaDmPfgsY~~s~e--~av~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
++ +..+.|+++ ++|- |+- ..++.=.+..+++|++||-|=|=. +|..+..+++.+.||..+
T Consensus 81 ir~~~~~~pivl-----m~Y~-N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 81 IRKKEPDIPIVL-----MTYY-NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HHHHCTSSEEEE-----EE-H-HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEE
T ss_pred HhccCCCCCEEE-----Eeec-cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEE
Confidence 99 666666554 5673 442 234444556678999999998853 455555666667898765
No 188
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.42 E-value=0.35 Score=48.41 Aligned_cols=131 Identities=19% Similarity=0.208 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCCc---------------------------cchHHHHHHHHHc---CCceeeeccCCcc
Q 016682 171 QAVDTAVRILKEGGMDAIKLEGGS---------------------------PSRITAARGIVEA---GIAVMGHVGLTPQ 220 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEgg~---------------------------~e~~~~I~alv~a---GIPV~gHiGLtPQ 220 (384)
+..+.|.|. +++|.|+|.|-++. .-..+.|++++++ ++||.-- +++.
T Consensus 150 ~~~~aA~ra-~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vr--is~~ 226 (338)
T cd04733 150 RFAHAARLA-QEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIK--LNSA 226 (338)
T ss_pred HHHHHHHHH-HHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEE--EcHH
Confidence 345555554 57999999997650 2234566666653 4677643 2221
Q ss_pred cccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe------cCCC---------------HHHHHHHHhhcCCCEEE
Q 016682 221 AISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL------ECVP---------------PPVAAAATSALQIPTIG 279 (384)
Q Consensus 221 ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl------E~Vp---------------~ela~~It~~l~IPtIG 279 (384)
.|.-.|-|. ++.++-++.|+++|++.|-+ +... .+.++.|.+.+++|+++
T Consensus 227 ------~~~~~g~~~---eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 297 (338)
T cd04733 227 ------DFQRGGFTE---EDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMV 297 (338)
T ss_pred ------HcCCCCCCH---HHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEE
Confidence 111224443 35678888999999988863 1110 37788999999999987
Q ss_pred EcCCCCC-CchhhhH---hhhhcCCCCCCCCCCCcchhhhh
Q 016682 280 IGAGPFC-SGQVLVY---HDLLGMMQHPHHAKVTPKFCKQF 316 (384)
Q Consensus 280 IGAG~~c-DGQvLV~---~DlLG~~~~P~~~~~~PkFvk~y 316 (384)
-|.=..- |.+-++- -|++++.. | --.-|-|+++.
T Consensus 298 ~G~i~t~~~a~~~l~~g~aD~V~lgR-~--~iadP~~~~k~ 335 (338)
T cd04733 298 TGGFRTRAAMEQALASGAVDGIGLAR-P--LALEPDLPNKL 335 (338)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeeCh-H--hhhCccHHHHH
Confidence 5532111 2333333 48888763 1 11236666554
No 189
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=94.40 E-value=5.5 Score=39.32 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=79.7
Q ss_pred HHHHhhhCCCcEEE--EecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 83 HLRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 83 ~lr~~k~~g~~I~m--lTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
.|+++.++|++... ++-.+...+.++..+|+|.|++= ---.+++++++...++++.. ...+ .++=.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD----------~EHg~~~~~~l~~~i~a~~~-~g~~-~lVRv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLID----------GEHAPNTIQDLYHQLQAIAP-YASQ-PVIRP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEc----------cccCCCCHHHHHHHHHHHHh-cCCC-eEEEC
Confidence 37777788887643 56778889999999999999873 11237889999988888863 4333 45666
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCc
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTP 219 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtP 219 (384)
|..++ ... .|.+ +.||++|-+-- -+.++..+++++ ..-|-.|+=|+-|
T Consensus 76 p~~~~----~~i----~r~L-D~GA~GIivP~--V~saeeA~~~V~a~rYpP~G~Rg~g~ 124 (267)
T PRK10128 76 VEGSK----PLI----KQVL-DIGAQTLLIPM--VDTAEQARQVVSATRYPPYGERGVGA 124 (267)
T ss_pred CCCCH----HHH----HHHh-CCCCCeeEecC--cCCHHHHHHHHHhcCCCCCCCCCCCC
Confidence 75443 222 5788 79999998854 345666777775 4666666655554
No 190
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.39 E-value=1.8 Score=47.33 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=92.6
Q ss_pred HHHHHHhhhCCCcEEEEe-------cCChH------HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH
Q 016682 81 LTHLRQKHKNGEPITMVT-------AYDYP------SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlT-------AyD~~------sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV 147 (384)
+..||+.- .+.++.|+. -.-|+ ..+.+-+.|+|++=+.|++ -.++-|..+.+++
T Consensus 66 l~~~r~~~-pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~l------------nd~~n~~~~i~~~ 132 (596)
T PRK14042 66 LRQLRQAL-PNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDAL------------NDARNLKVAIDAI 132 (596)
T ss_pred HHHHHHhC-CCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccC------------cchHHHHHHHHHH
Confidence 45555544 456777776 22233 6777789999999999988 3467788888888
Q ss_pred HcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeeccCCcc
Q 016682 148 ARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHVGLTPQ 220 (384)
Q Consensus 148 ~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHiGLtPQ 220 (384)
++.=. .+.+-+=| +|+--+++..++.+.++. +.||+.|.|-|-. ....+.|++|.++ ++|+--|
T Consensus 133 k~~G~--~~~~~i~yt~sp~~t~e~~~~~ak~l~-~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H------ 203 (596)
T PRK14042 133 KSHKK--HAQGAICYTTSPVHTLDNFLELGKKLA-EMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLH------ 203 (596)
T ss_pred HHcCC--EEEEEEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEE------
Confidence 76422 23333222 344457888888887776 7999999999852 4566777777753 7888777
Q ss_pred cccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 221 AISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 221 ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+..| . .+.-..+-.+|||+.|
T Consensus 204 ~Hnt~G-l------------a~an~laAieaGad~i 226 (596)
T PRK14042 204 SHSTSG-L------------ASICHYEAVLAGCNHI 226 (596)
T ss_pred eCCCCC-c------------HHHHHHHHHHhCCCEE
Confidence 222222 1 1334455568999854
No 191
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.38 E-value=6.5 Score=39.75 Aligned_cols=179 Identities=11% Similarity=0.138 Sum_probs=111.8
Q ss_pred CHHH-HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-C
Q 016682 80 TLTH-LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-R 153 (384)
Q Consensus 80 t~~~-lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-~ 153 (384)
|..+ |+..++++--+-..|+||..+++. +|+.+.++|+-.+....- ...++.+...++..++-++ .
T Consensus 4 ~~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~--------~~g~~~~~~~~~~~a~~~~~V 75 (307)
T PRK05835 4 KGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIK--------YMGIDMAVGMVKIMCERYPHI 75 (307)
T ss_pred CHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHh--------hCChHHHHHHHHHHHHhcCCC
Confidence 4444 445567777899999999999864 577799999844332222 2335567777777777775 5
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccccC
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lg 226 (384)
| |+.-+.-| . +.+.. .+.+ ++|.+.|.+-|.. +|-.+..+.++ ..||.|=|=||-.+... +
T Consensus 76 P-ValHLDHg-~--~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e---d 143 (307)
T PRK05835 76 P-VALHLDHG-T--TFESC----EKAV-KAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIE---D 143 (307)
T ss_pred e-EEEECCCC-C--CHHHH----HHHH-HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc---C
Confidence 6 77777752 2 44443 4567 5899999997763 34444444444 58999988777655221 1
Q ss_pred CccccC----C-CHHHHHHHHHHHHHHHHcCCcEEEec--------------CCCHHHHHHHHhhcCCCEEEEcCCCC
Q 016682 227 GFRPQG----K-NVTSAVKVVETALALQEVGCFSVVLE--------------CVPPPVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 227 GfrvqG----r-t~~~a~~ll~rAkAleeAGAf~IvlE--------------~Vp~ela~~It~~l~IPtIGIGAG~~ 285 (384)
+..... - +.++|.+.++ +-|+|+|=+= -+.-++.++|.+.+++|+. +-.|++
T Consensus 144 ~~~~~~~~~~~TdPeeA~~Fv~------~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLV-LHGgSG 214 (307)
T PRK05835 144 NISVDEKDAVLVNPKEAEQFVK------ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLV-LHGASA 214 (307)
T ss_pred CcccccccccCCCHHHHHHHHH------hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEE-EeCCCC
Confidence 111111 1 2344444433 4588876431 2346888999999999975 544444
No 192
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.36 E-value=0.62 Score=47.67 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=71.5
Q ss_pred CChHHHHHHHH--cCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHH
Q 016682 100 YDYPSAVHLDS--AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 100 yD~~sA~iae~--AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~ 177 (384)
-|+..+..+-+ +|+|+|.+- +.+||.. -++...+.|+..-|..+|++ |.- .+++.+ .
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD-----~AhGhs~-------~~i~~ik~ik~~~P~~~vIa----GNV-~T~e~a----~ 166 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICID-----VANGYSE-------HFVQFVAKAREAWPDKTICA----GNV-VTGEMV----E 166 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-----CCCCcHH-------HHHHHHHHHHHhCCCCcEEE----ecc-cCHHHH----H
Confidence 34444444444 699999874 2356554 45566677777777766774 455 566766 3
Q ss_pred HHHHHhCCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHH
Q 016682 178 RILKEGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ 240 (384)
.|+ ++|||+||+-=|. .-..+.-++..+.|+||+ ..||.+--|.
T Consensus 167 ~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI-----------ADGGi~~sGD------- 227 (346)
T PRK05096 167 ELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV-----------SDGGCTVPGD------- 227 (346)
T ss_pred HHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE-----------ecCCcccccH-------
Confidence 466 6999999985331 111222233345688887 4677766651
Q ss_pred HHHHHHHHHHcCCcEEEecC
Q 016682 241 VVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 241 ll~rAkAleeAGAf~IvlE~ 260 (384)
-+||+. +||+++.+=.
T Consensus 228 ---I~KAla-aGAd~VMlGs 243 (346)
T PRK05096 228 ---VAKAFG-GGADFVMLGG 243 (346)
T ss_pred ---HHHHHH-cCCCEEEeCh
Confidence 355654 8999888653
No 193
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.35 E-value=0.48 Score=46.81 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=78.5
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
|++-=+.+-++| -.|+| +.-|...|+-++++|+.+|.---|....-+|..+ -+..+.|+...+.| |+.
T Consensus 126 tl~Aae~Lv~eG-F~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n---------~~~l~~i~e~~~vp-Viv 194 (267)
T CHL00162 126 TLKAAEFLVKKG-FTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQN---------LLNLQIIIENAKIP-VII 194 (267)
T ss_pred HHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCC---------HHHHHHHHHcCCCc-EEE
Confidence 444445566665 55665 7778999999999999999855455555667766 45667777777666 778
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------cchHHHHHHHHHcC
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEAG 208 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------~e~~~~I~alv~aG 208 (384)
| .+- .+++++ .+.| |.|+|+|-+--+. .+|+..++..+++|
T Consensus 195 d---AGI-gt~sDa----~~Am-ElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 195 D---AGI-GTPSEA----SQAM-ELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred e---CCc-CCHHHH----HHHH-HcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 8 455 467777 4577 7999999876441 67888888888776
No 194
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.34 E-value=0.45 Score=48.42 Aligned_cols=124 Identities=22% Similarity=0.351 Sum_probs=78.1
Q ss_pred CCCCHHHHHHhh---hCC--CcEEE---E-ecC--ChHH-----HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHH
Q 016682 77 QRVTLTHLRQKH---KNG--EPITM---V-TAY--DYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEM 140 (384)
Q Consensus 77 ~~~t~~~lr~~k---~~g--~~I~m---l-TAy--D~~s-----A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeM 140 (384)
..+|++++...- .+| .++++ + ..| +... .+++.++|+|+|=.=++. .++
T Consensus 76 ~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~---------------~~~ 140 (332)
T PLN02424 76 LPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS---------------PSR 140 (332)
T ss_pred CCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc---------------HHH
Confidence 367888765432 333 55555 1 346 3333 467788999999543332 566
Q ss_pred HHHHHHHHcccCCCcE----E---EeCCCCCCcC---C---HHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-
Q 016682 141 LVHCRAVARGAKRPLL----V---GDLPFGTYES---S---TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE- 206 (384)
Q Consensus 141 l~h~raV~Rga~~~~v----v---aDmPfgsY~~---s---~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~- 206 (384)
+..+++++ ....|++ . .+.-+|+|.. + .++.++.|.. ++++||.+|-||+= . .+..+.|++
T Consensus 141 ~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~a-le~AGAf~ivLE~V-p--~~la~~It~~ 215 (332)
T PLN02424 141 VTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALA-LQEAGCFAVVLECV-P--APVAAAITSA 215 (332)
T ss_pred HHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHH-HHHcCCcEEEEcCC-c--HHHHHHHHHh
Confidence 77778777 4556744 1 3444577632 2 3356666655 45899999999997 3 336777775
Q ss_pred cCCceeeeccCCccc
Q 016682 207 AGIAVMGHVGLTPQA 221 (384)
Q Consensus 207 aGIPV~gHiGLtPQ~ 221 (384)
..||++| ||=-|..
T Consensus 216 l~IPtIG-IGAG~~c 229 (332)
T PLN02424 216 LQIPTIG-IGAGPFC 229 (332)
T ss_pred CCCCEEe-ecCCCCC
Confidence 5899998 7766643
No 195
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=94.33 E-value=5.4 Score=41.85 Aligned_cols=224 Identities=14% Similarity=0.116 Sum_probs=124.5
Q ss_pred cceeccCchhhhhh---hhHHHhhhHHHHHHHhhhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 016682 9 KRVQVAQPKHLFKQ---TQLLVTLTQHYSRILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLR 85 (384)
Q Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~~~~~t~~~lr 85 (384)
-++.++-|-++|.. .|+|-.+.-...=|...+.++- ---.++++ + ...+.|| +.-++-+|
T Consensus 74 ~~v~IayP~~~f~~~~~~~llt~i~GN~~~~~~~~~irL-~D~~lP~~---~------~~~f~GP-------~fGi~G~R 136 (412)
T TIGR03326 74 GIVKIAYPLTLFEEGNLPGLLASIAGNIFGMKAVKGLRL-LDFHFPAE---F------LRHFKGP-------QFGIEGVR 136 (412)
T ss_pred EEEEEEecHHhcCCccHHHHHHHHhccccccccccceEE-EEecCCHH---H------HhcCCCC-------CCCchhHH
Confidence 47889999999866 6777766654322211222221 00000000 0 1223343 45667777
Q ss_pred Hhhh-CCCcEEEEecCC------hHHHHHHH---HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcc----c
Q 016682 86 QKHK-NGEPITMVTAYD------YPSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG----A 151 (384)
Q Consensus 86 ~~k~-~g~~I~mlTAyD------~~sA~iae---~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rg----a 151 (384)
++.. .++||++-..-= ...|+++. ..|+|+|=== -+..|.-.-+++|-+..|..+.+. +
T Consensus 137 ~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDD-------E~l~~q~~~p~~eRv~~~~~a~~~a~~eT 209 (412)
T TIGR03326 137 EFLGIKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDD-------ENLTSQPFNRFEERVEKLYKVRDKVEAET 209 (412)
T ss_pred HHhCCCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecC-------CCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 6543 457887653322 23444444 4588887311 123344467788887666554432 2
Q ss_pred C-CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH----cCCceeeeccCCcccccccC
Q 016682 152 K-RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE----AGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 152 ~-~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~----aGIPV~gHiGLtPQ~~~~lg 226 (384)
. ..+..+++= .++++-.+++.... +.|+.++.+--. .-=...++.|++ .++|+++|=- ..|
T Consensus 210 G~~~~ya~NiT-----~~~~em~~ra~~~~-~~G~~~~mv~~~-~~G~~~l~~l~~~~~~~~l~ih~Hra-------~~g 275 (412)
T TIGR03326 210 GERKEYLANIT-----APVREMERRAELVA-DLGGQYVMVDVV-VCGWSALQYIRELTEDLGLAIHAHRA-------MHA 275 (412)
T ss_pred CCcceEEEEec-----CCHHHHHHHHHHHH-HhCCCeEEEEee-ccchHHHHHHHHhhccCCeEEEEcCC-------ccc
Confidence 2 344456653 35688999987765 789999988643 111344666664 4899999921 112
Q ss_pred Cccc---cCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-------CHHHHHHHHhhcCCC
Q 016682 227 GFRP---QGKNVTSAVKVVETALALQEVGCFSVVLECV-------PPPVAAAATSALQIP 276 (384)
Q Consensus 227 Gfrv---qGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-------p~ela~~It~~l~IP 276 (384)
-|.. .|=+ ..+ -+|.+.=||||.+.+..+ +.+....|.+.+.-|
T Consensus 276 a~~~~~~~Gis----~~v--l~kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~ 329 (412)
T TIGR03326 276 AFTRNPKHGIS----MFA--LAKLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQK 329 (412)
T ss_pred ccccCCCCcCc----HHH--HHHHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCc
Confidence 2211 1212 122 577888899999999988 355556666665544
No 196
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.32 E-value=1.3 Score=44.82 Aligned_cols=140 Identities=20% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHHHHHcCCCEEEec--chhhhhhc--cCCCCcCCCHHHHHHHHHHHHcccCCCcEEE-eCCCCCCcCCHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVG--DSAAMVVH--GHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 105 A~iae~AGiD~IlVG--DSl~mv~l--G~~dT~~VtldeMl~h~raV~Rga~~~~vva-DmPfgsY~~s~e~av~nA~rl 179 (384)
++.++++|||.|=|| |.++...+ |++. ++-.|++..++... ++.-+.+ =.| ++ .+.++. .+.
T Consensus 31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~---~~~~e~i~~~~~~~---~~~~~~~ll~p--g~-~~~~dl----~~a 97 (337)
T PRK08195 31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGA---HTDEEYIEAAAEVV---KQAKIAALLLP--GI-GTVDDL----KMA 97 (337)
T ss_pred HHHHHHcCCCEEEeecCCCCCCccccCCCCC---CCHHHHHHHHHHhC---CCCEEEEEecc--Cc-ccHHHH----HHH
Confidence 556899999999664 44444333 4443 23455555444333 3332332 124 23 244443 233
Q ss_pred HHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
. +.|++.|.+-... +...+.|+.+.+.|..|++-+= .. ++. .-+++++.++.++++||+.|
T Consensus 98 ~-~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~----~a---------~~~--~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 98 Y-DAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLM----MS---------HMA--PPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred H-HcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEE----ec---------cCC--CHHHHHHHHHHHHhCCCCEE
Confidence 4 6899998876431 3456778888899988876311 11 222 23678888999999999999
Q ss_pred Eec-C----CCH---HHHHHHHhhc
Q 016682 257 VLE-C----VPP---PVAAAATSAL 273 (384)
Q Consensus 257 vlE-~----Vp~---ela~~It~~l 273 (384)
.+- . .|. ++.+.+.+++
T Consensus 162 ~i~DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 162 YVVDSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 976 2 254 3444555556
No 197
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.30 E-value=0.93 Score=43.84 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.|+..++.|+|-|++-|--+.-.. .... +...+.+++.+..| |.++ |+. .+.+++ .+++ +.
T Consensus 35 ~a~~~~~~g~~~l~i~Dl~~~~~~-----~~~n----~~~i~~i~~~~~~p-v~~g---GGi-~s~~d~----~~l~-~~ 95 (258)
T PRK01033 35 AVRIFNEKEVDELIVLDIDASKRG-----SEPN----YELIENLASECFMP-LCYG---GGI-KTLEQA----KKIF-SL 95 (258)
T ss_pred HHHHHHHcCCCEEEEEECCCCcCC-----Cccc----HHHHHHHHHhCCCC-EEEC---CCC-CCHHHH----HHHH-HC
Confidence 478888999999988875322111 1111 33445566666666 4443 455 366665 4566 68
Q ss_pred CCCEEEeCCCccchHHHHHHHHHc----CCceeeeccCCcccccccCCcccc--CCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 184 GMDAIKLEGGSPSRITAARGIVEA----GIAVMGHVGLTPQAISVLGGFRPQ--GKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 184 GAdaVKLEgg~~e~~~~I~alv~a----GIPV~gHiGLtPQ~~~~lgGfrvq--Grt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
|++.|-|--..-+..+.++.+.+. .|.|- +....- -.|.|++. |=.+..-...++-++.+++.|++.|+
T Consensus 96 G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vs----iD~k~g-~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii 170 (258)
T PRK01033 96 GVEKVSINTAALEDPDLITEAAERFGSQSVVVS----IDVKKN-LGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEIL 170 (258)
T ss_pred CCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEE----EEEecC-CCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEE
Confidence 999998732212234455555542 23222 221100 00112221 11111123456778889999999999
Q ss_pred ecCCC---------HHHHHHHHhhcCCCEEEEc
Q 016682 258 LECVP---------PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 258 lE~Vp---------~ela~~It~~l~IPtIGIG 281 (384)
+-.+. -++++++++.+++|+|.=|
T Consensus 171 ~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasG 203 (258)
T PRK01033 171 LNSIDRDGTMKGYDLELLKSFRNALKIPLIALG 203 (258)
T ss_pred EEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeC
Confidence 87665 4888999999999998544
No 198
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.29 E-value=0.53 Score=48.14 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=68.8
Q ss_pred HHHHHHhhhC-CCcEEEEe-cCChHHHHHHHHcCCCEEEecchhhhhhccCCCC-cCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 81 LTHLRQKHKN-GEPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 81 ~~~lr~~k~~-g~~I~mlT-AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT-~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
++.++.+++. ..+.++-+ .-+..-|+.+.++|+|.|.||=..|.+.-+..-+ ..++.=..+..|...+++...| |+
T Consensus 138 i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~-VI 216 (343)
T TIGR01305 138 VEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGH-II 216 (343)
T ss_pred HHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCe-EE
Confidence 3444444432 23555554 9999999999999999999986666666665544 3446666677777777766555 99
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
+| |+.. +..+. .+.+ ..||++|.+-
T Consensus 217 aD---GGIr-~~gDI----~KAL-A~GAd~VMlG 241 (343)
T TIGR01305 217 SD---GGCT-CPGDV----AKAF-GAGADFVMLG 241 (343)
T ss_pred Ec---CCcC-chhHH----HHHH-HcCCCEEEEC
Confidence 99 5553 34444 2456 5899999994
No 199
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=94.28 E-value=0.22 Score=49.55 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=74.5
Q ss_pred CCcEEEEecCChHH----HHHHHHcCCCEE-E-ecchhh-hhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 91 GEPITMVTAYDYPS----AVHLDSAGIDIC-L-VGDSAA-MVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 91 g~~I~mlTAyD~~s----A~iae~AGiD~I-l-VGDSl~-mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
+..++-+...|... |.++.+.|+|.| + .|=... .+--|+-+.+.=..+.+...++++++.++.| |.+-+=.
T Consensus 54 ~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~p-vsvKiR~- 131 (309)
T PF01207_consen 54 RPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIP-VSVKIRL- 131 (309)
T ss_dssp -TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSE-EEEEEES-
T ss_pred cceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccc-eEEeccc-
Confidence 34677788888654 566667799999 4 663222 2455677777788888899999999999877 6666664
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------cchHHHHHHHHH-cCCceeee
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AGIAVMGH 214 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~-aGIPV~gH 214 (384)
++..+.++.++.+.++. ++|+++|-+-+-+ .-..+.|+.+++ ..|||+++
T Consensus 132 g~~~~~~~~~~~~~~l~-~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~N 189 (309)
T PF01207_consen 132 GWDDSPEETIEFARILE-DAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIAN 189 (309)
T ss_dssp ECT--CHHHHHHHHHHH-HTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEE
T ss_pred ccccchhHHHHHHHHhh-hcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEc
Confidence 44456777887776555 7999999887631 334567777775 47999987
No 200
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=94.25 E-value=0.9 Score=42.45 Aligned_cols=149 Identities=20% Similarity=0.289 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+..++.|+|.+.+=|- -|........+ ...+.+++.++.|+.+.+ +. .+.+++ .+++ +.
T Consensus 33 ~a~~~~~~g~~~l~v~dl-----~~~~~g~~~~~----~~i~~i~~~~~~pi~~gg----GI-~~~ed~----~~~~-~~ 93 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDL-----DGAKEGGPVNL----PVIKKIVRETGVPVQVGG----GI-RSLEDV----EKLL-DL 93 (230)
T ss_pred HHHHHHHcCCCEEEEEeC-----CccccCCCCcH----HHHHHHHHhcCCCEEEeC----Cc-CCHHHH----HHHH-Hc
Confidence 467778999999976322 12222222332 333556666677766543 45 467776 3556 68
Q ss_pred CCCEEEeCCCccchHHHHHHHHH-cC-CceeeeccCCcccccccCC-ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 016682 184 GMDAIKLEGGSPSRITAARGIVE-AG-IAVMGHVGLTPQAISVLGG-FRPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 184 GAdaVKLEgg~~e~~~~I~alv~-aG-IPV~gHiGLtPQ~~~~lgG-frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~ 260 (384)
||+.|-+-....+-.+.++.+.+ .| -+++-= +. ..+| ..+.|..+......++.++.|++.||+.+++=.
T Consensus 94 Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~s--id-----~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~ 166 (230)
T TIGR00007 94 GVDRVIIGTAAVENPDLVKELLKEYGPERIVVS--LD-----ARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTD 166 (230)
T ss_pred CCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEE--EE-----EECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEe
Confidence 99999773221112334444443 23 122210 01 0111 122332221113557788999999999777432
Q ss_pred C---------CHHHHHHHHhhcCCCEE
Q 016682 261 V---------PPPVAAAATSALQIPTI 278 (384)
Q Consensus 261 V---------p~ela~~It~~l~IPtI 278 (384)
+ .-++.+.+.+.+++|++
T Consensus 167 ~~~~g~~~g~~~~~i~~i~~~~~ipvi 193 (230)
T TIGR00007 167 ISRDGTLSGPNFELTKELVKAVNVPVI 193 (230)
T ss_pred ecCCCCcCCCCHHHHHHHHHhCCCCEE
Confidence 2 25888999999999977
No 201
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.24 E-value=6.5 Score=39.22 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=129.2
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK 152 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~ 152 (384)
+|..++ +..++++--+-..|+|+..+++. +|+.+.++|+ ++.+. ..| ..++.+...++..++.++
T Consensus 4 v~~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 4 VSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCC
Confidence 455554 45566777899999999999874 5777999998 43221 222 335667778888888888
Q ss_pred CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHH----HHHHHHHcCCceeeeccCCcccccc-
Q 016682 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRIT----AARGIVEAGIAVMGHVGLTPQAISV- 224 (384)
Q Consensus 153 ~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~----~I~alv~aGIPV~gHiGLtPQ~~~~- 224 (384)
.| |+.-+.-| . +.+. +.+.+ ++|...|.+-|.. +|-.. .++.....||.|=|=||-.+-...-
T Consensus 75 VP-V~lHLDHg-~--~~e~----i~~Ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~ 145 (284)
T PRK09195 75 HP-LALHLDHH-E--KFDD----IAQKV-RSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDL 145 (284)
T ss_pred CC-EEEECCCC-C--CHHH----HHHHH-HcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCc
Confidence 88 77777653 2 4433 35667 5899999997763 33333 3444446899997666654421110
Q ss_pred c-CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchh
Q 016682 225 L-GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQV 290 (384)
Q Consensus 225 l-gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQv 290 (384)
. .+-...--+.+++.+.++ +-|+|+|=+= -+.-++.++|.+.+++|+. +-.|+++ |=|+
T Consensus 146 ~~~~~~~~~T~peea~~Fv~------~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLV-LHGgSG~~~e~~ 218 (284)
T PRK09195 146 QVDEADALYTDPAQAREFVE------ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLV-LHGASGLPTKDI 218 (284)
T ss_pred ccccccccCCCHHHHHHHHH------HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeE-EecCCCCCHHHH
Confidence 0 000011124455555544 5688877532 2346899999999999975 5444433 3332
Q ss_pred hhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 291 LVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 291 LV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
.=. =-+|.. | +.-+-++.....+++++|..+
T Consensus 219 ~~a-i~~Gi~----------K-iNi~T~l~~a~~~~~~~~~~~ 249 (284)
T PRK09195 219 QQT-IKLGIC----------K-VNVATELKIAFSQALKNYLTE 249 (284)
T ss_pred HHH-HHcCCe----------E-EEeCcHHHHHHHHHHHHHHHh
Confidence 211 112433 1 223345555566777777654
No 202
>PLN02489 homocysteine S-methyltransferase
Probab=94.23 E-value=1.5 Score=44.26 Aligned_cols=119 Identities=16% Similarity=0.219 Sum_probs=70.9
Q ss_pred CCcEEEeCC-CC-----------CCc--CCHHHHHHHH---HHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcC--Cce
Q 016682 153 RPLLVGDLP-FG-----------TYE--SSTNQAVDTA---VRILKEGGMDAIKLEGGS--PSRITAARGIVEAG--IAV 211 (384)
Q Consensus 153 ~~~vvaDmP-fg-----------sY~--~s~e~av~nA---~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aG--IPV 211 (384)
..+|.++++ +| .|. .+.+++.+.= .+.+.++|+|.+-+|=-. .|....++++.+.+ +|+
T Consensus 132 ~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~ 211 (335)
T PLN02489 132 PILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPA 211 (335)
T ss_pred CcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeE
Confidence 367889985 43 343 3455554442 333447999999999542 55666667776664 787
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH----HHHHHHHhhcCCCEEEEcC
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP----PVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~----ela~~It~~l~IPtIGIGA 282 (384)
+.= ++- ..+|...-|.+.+++.+.++ +..++++|=+=|.++ ++++.+...+++|++..-.
T Consensus 212 ~iS--~t~----~~~~~l~~G~~~~~~~~~~~-----~~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPN 275 (335)
T PLN02489 212 WIS--FNS----KDGVNVVSGDSLLECASIAD-----SCKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPN 275 (335)
T ss_pred EEE--EEe----CCCCccCCCCcHHHHHHHHH-----hcCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECC
Confidence 643 222 12344445655444443332 124788899999853 4556666777888776643
No 203
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=94.22 E-value=0.51 Score=47.59 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCCC---------c------------------cchHHHHHHHHHc---CCceeeeccCCccc
Q 016682 172 AVDTAVRILKEGGMDAIKLEGG---------S------------------PSRITAARGIVEA---GIAVMGHVGLTPQA 221 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg---------~------------------~e~~~~I~alv~a---GIPV~gHiGLtPQ~ 221 (384)
..+.|.| .+++|.|+|.|-++ + ....+.|++++++ .++|.--|+ +.
T Consensus 139 f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~--~~- 214 (353)
T cd02930 139 FARCAAL-AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLS--ML- 214 (353)
T ss_pred HHHHHHH-HHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEec--cc-
Confidence 3444444 45799999999763 0 2223555555553 445543322 21
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe-----c-CCC-----------HHHHHHHHhhcCCCEEEEcCCC
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL-----E-CVP-----------PPVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl-----E-~Vp-----------~ela~~It~~l~IPtIGIGAG~ 284 (384)
++.-.|-+. ++.++-++.|+++|+|.|-+ | -++ .+.+++|.+.+++|+++-|.=.
T Consensus 215 -----D~~~~g~~~---~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~ 286 (353)
T cd02930 215 -----DLVEGGSTW---EEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRIN 286 (353)
T ss_pred -----ccCCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCC
Confidence 111123343 45678888999999999977 2 111 3457889999999988644311
Q ss_pred -CCCchhhhH---hhhhcCCCCCCCCCCCcchhhhhhhhH
Q 016682 285 -FCSGQVLVY---HDLLGMMQHPHHAKVTPKFCKQFARVG 320 (384)
Q Consensus 285 -~cDGQvLV~---~DlLG~~~~P~~~~~~PkFvk~y~~~~ 320 (384)
.-|.+-++- -|++++.. | .-.-|-|+++..+..
T Consensus 287 ~~~~a~~~i~~g~~D~V~~gR-~--~l~dP~~~~k~~~g~ 323 (353)
T cd02930 287 TPEVAERLLADGDADMVSMAR-P--FLADPDFVAKAAAGR 323 (353)
T ss_pred CHHHHHHHHHCCCCChhHhhH-H--HHHCccHHHHHHhCC
Confidence 112333333 36666652 0 011366666655543
No 204
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=94.21 E-value=1.8 Score=43.39 Aligned_cols=194 Identities=15% Similarity=0.113 Sum_probs=97.8
Q ss_pred HHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
|.+|.+.| +.+-+-+...|+|+|+||.-++..=.-+-+-. ..+ +.|.--.=..+.++|.+.++.| |++=.=-
T Consensus 5 ~a~~~kgg---vimdv~~~eqa~iae~aga~avm~le~~p~d~--r~~-ggv~R~~~p~~I~~I~~~V~iP-Vig~~ki- 76 (287)
T TIGR00343 5 LAQMLKGG---VIMDVVNPEQAKIAEEAGAVAVMALERVPADI--RAS-GGVARMSDPKMIKEIMDAVSIP-VMAKVRI- 76 (287)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEEeeccCchhh--Hhc-CCeeecCCHHHHHHHHHhCCCC-EEEEeec-
Confidence 66777665 66677789999999999998887622221111 000 1111111145567888888888 5533222
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc---chHHHHHHHHH-cCCceeeeccCCcccccc-cCCccccCCC----
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGSP---SRITAARGIVE-AGIAVMGHVGLTPQAISV-LGGFRPQGKN---- 234 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~~---e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~-lgGfrvqGrt---- 234 (384)
+| ..++ +.+.+.|+|.| |.++ -.-+.+..+.. -++|+|.-+.=...-... --|+-..+.|
T Consensus 77 gh---~~Ea-----~~L~~~GvDiI---DeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~g 145 (287)
T TIGR00343 77 GH---FVEA-----QILEALGVDYI---DESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAG 145 (287)
T ss_pred cH---HHHH-----HHHHHcCCCEE---EccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCC
Confidence 23 2333 45558999999 3321 11233333333 278887543211111110 1233333322
Q ss_pred -HH--HH----HHHHHHHHHHH------HcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCC-------------CCCc
Q 016682 235 -VT--SA----VKVVETALALQ------EVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGP-------------FCSG 288 (384)
Q Consensus 235 -~~--~a----~~ll~rAkAle------eAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~-------------~cDG 288 (384)
.+ +| ..+-+..+.+. +.=.+.--+ .+|-++.+++.+..++|++-|..|. +|||
T Consensus 146 Tg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdG 224 (287)
T TIGR00343 146 TGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKEL-RVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADG 224 (287)
T ss_pred CccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhccc-CCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCE
Confidence 11 11 11111111111 000001111 3678999999999999999444443 4888
Q ss_pred hhhhHhhhhc
Q 016682 289 QVLVYHDLLG 298 (384)
Q Consensus 289 QvLV~~DlLG 298 (384)
|.|...++.
T Consensus 225 -VaVGSaI~k 233 (287)
T TIGR00343 225 -VFVGSGIFK 233 (287)
T ss_pred -EEEhHHhhc
Confidence 557775654
No 205
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.19 E-value=6.7 Score=39.19 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=129.1
Q ss_pred CCHHH-HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC
Q 016682 79 VTLTH-LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 79 ~t~~~-lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~ 153 (384)
+|..+ |+..++++--+-..|+|++.+++. +|+.+.++|+-...... ....++.+...++..++.++.
T Consensus 4 v~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~--------~~~~~~~~~~~~~~~a~~~~V 75 (286)
T PRK12738 4 ISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTF--------KHIALEEIYALCSAYSTTYNM 75 (286)
T ss_pred CcHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchh--------hhCCHHHHHHHHHHHHHHCCC
Confidence 34444 455667778999999999999975 57789999984211111 124567777778888888877
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHH----HHHHcCCceeeeccCCccccccc-
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAAR----GIVEAGIAVMGHVGLTPQAISVL- 225 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~----alv~aGIPV~gHiGLtPQ~~~~l- 225 (384)
| |+.-|.-| . +.+.. .+.+ ++|...|.+-|.. +|-....+ .....||.|=|=||-......-.
T Consensus 76 P-ValHLDHg-~--~~e~i----~~ai-~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~ 146 (286)
T PRK12738 76 P-LALHLDHH-E--SLDDI----RRKV-HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMS 146 (286)
T ss_pred C-EEEECCCC-C--CHHHH----HHHH-HcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcc
Confidence 7 77777652 2 44444 4566 5899999997763 33343334 44457999976666444211100
Q ss_pred -CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchhh
Q 016682 226 -GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQVL 291 (384)
Q Consensus 226 -gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQvL 291 (384)
.+-...=-+.++|.+.++ +-|+|+|=+= -+.=++.++|.+.+++|+. +-.|+++ |=|+.
T Consensus 147 ~~~~~~~~T~peea~~Fv~------~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLV-LHGgSG~~~e~~~ 219 (286)
T PRK12738 147 VDAESAFLTDPQEAKRFVE------LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLV-LHGASDVPDEFVR 219 (286)
T ss_pred cccchhcCCCHHHHHHHHH------HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEE-EeCCCCCCHHHHH
Confidence 000000013344444433 3599987542 2346889999999999974 5444443 33321
Q ss_pred hHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 292 VYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 292 V~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
=. ==+|+. | +.-+-++.....+++++|..+
T Consensus 220 ka-i~~GI~----------K-iNi~T~l~~a~~~~~~~~~~~ 249 (286)
T PRK12738 220 RT-IELGVT----------K-VNVATELKIAFAGAVKAWFAE 249 (286)
T ss_pred HH-HHcCCe----------E-EEeCcHHHHHHHHHHHHHHHh
Confidence 11 113433 1 233445666666777777655
No 206
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.09 E-value=0.37 Score=47.37 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc-CCCcEEEeCCC-CCCcCCHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF-GTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-~~~~vvaDmPf-gsY~~s~e~av~nA~rl~k 181 (384)
-|+.++++|+|.+++.- |.-.+.|-++++.|.+.|+..+ +.|+++=|.|. .++..+++... ++.+
T Consensus 88 la~~a~~~Gad~v~v~~---------P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~----~L~~ 154 (290)
T TIGR00683 88 LGKYATELGYDCLSAVT---------PFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFG----ELYK 154 (290)
T ss_pred HHHHHHHhCCCEEEEeC---------CcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHH----HHhc
Confidence 45778899999998742 3344567899999999999877 69999999993 46767777553 5654
Q ss_pred HhCCCEEEeCCCccchHHHHHHHHH
Q 016682 182 EGGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 182 eaGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
.-.+.+||-..+ . ...+..+.+
T Consensus 155 ~pnv~giK~s~~-d--~~~~~~~~~ 176 (290)
T TIGR00683 155 NPKVLGVKFTAG-D--FYLLERLKK 176 (290)
T ss_pred CCCEEEEEeCCC-C--HHHHHHHHH
Confidence 456899999876 2 344555543
No 207
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.09 E-value=0.88 Score=42.75 Aligned_cols=124 Identities=20% Similarity=0.166 Sum_probs=72.3
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH---HcccCCCcEEEeCCCCCCc----CCHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV---ARGAKRPLLVGDLPFGTYE----SSTNQAVDTAV 177 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV---~Rga~~~~vvaDmPfgsY~----~s~e~av~nA~ 177 (384)
..-+-++|+|.+.+-...+. ...++++..++.| ++....++++ |....+.+ .+. +.++.+.
T Consensus 82 v~~a~~~Ga~~v~~~~~~~~----------~~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~~~~~~~-~~i~~~~ 149 (235)
T cd00958 82 VEDAVRLGADAVGVTVYVGS----------EEEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAVKNEKDP-DLIAYAA 149 (235)
T ss_pred HHHHHHCCCCEEEEEEecCC----------chHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcccCccCH-HHHHHHH
Confidence 34456889998855433321 1134555444444 4566677665 43221221 233 4455545
Q ss_pred HHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 178 RILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
|...+.|||.||+... .-.+.++.+++. ++||+ ..||-.. +| .++.+++++.+.++||+++
T Consensus 150 ~~a~~~GaD~Ik~~~~--~~~~~~~~i~~~~~~pvv-----------~~GG~~~--~~---~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 150 RIGAELGADIVKTKYT--GDAESFKEVVEGCPVPVV-----------IAGGPKK--DS---EEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHHHCCCEEEecCC--CCHHHHHHHHhcCCCCEE-----------EeCCCCC--CC---HHHHHHHHHHHHHcCCcEE
Confidence 5566899999999642 235677888753 46765 2344211 23 3566788888899999988
Q ss_pred Ee
Q 016682 257 VL 258 (384)
Q Consensus 257 vl 258 (384)
.+
T Consensus 212 ~v 213 (235)
T cd00958 212 AV 213 (235)
T ss_pred Ee
Confidence 74
No 208
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.07 E-value=3 Score=41.13 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCEEE--ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~Il--VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
..|+.++++|+|+|= +|-.-....-|+.....-..+.+..-+++|++.++.| |++=|.- .+ . +..+-+ +.+
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vKl~~-~~-~---~~~~~a-~~~ 189 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAKLTP-NI-T---DIREIA-RAA 189 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEECCC-Cc-h---hHHHHH-HHH
Confidence 456778888999994 4422211111221122234566777788888877777 5555552 22 2 232323 444
Q ss_pred HHhCCCEEE
Q 016682 181 KEGGMDAIK 189 (384)
Q Consensus 181 keaGAdaVK 189 (384)
+++|||+|-
T Consensus 190 ~~~Gadgi~ 198 (299)
T cd02940 190 KEGGADGVS 198 (299)
T ss_pred HHcCCCEEE
Confidence 589999996
No 209
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.07 E-value=1.4 Score=42.20 Aligned_cols=144 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred HHHhhhCCCcE-EEEecCChHH----HHHHHHcCCCEE-E-ecc-hhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 84 LRQKHKNGEPI-TMVTAYDYPS----AVHLDSAGIDIC-L-VGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 84 lr~~k~~g~~I-~mlTAyD~~s----A~iae~AGiD~I-l-VGD-Sl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
+..++..+.|+ +-+-..|... |+.+++ ++|.| + .|= ..-++-.|.-..+.-..+.+.+.+++|++ ++.|
T Consensus 65 ~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p- 141 (233)
T cd02911 65 IKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP- 141 (233)
T ss_pred HHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC-
Confidence 44444444443 3344454433 455555 45887 3 553 22334446555566667788888888887 5666
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
|.+=+.- ++ + ++.++.+.+ ++++|+|+|++..+. .-..+.|+.+. .+|||+|. ||.
T Consensus 142 VsvKir~-g~--~-~~~~~la~~-l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgn-----------GgI---- 200 (233)
T cd02911 142 VSVKIRA-GV--D-VDDEELARL-IEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGN-----------NSV---- 200 (233)
T ss_pred EEEEEcC-Cc--C-cCHHHHHHH-HHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEE-----------CCc----
Confidence 6666553 34 2 455555544 557999999997652 11246666665 68999975 332
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
.|.+ +++.+.+.|||+|.+
T Consensus 201 ~s~e-------da~~~l~~GaD~Vmi 219 (233)
T cd02911 201 TTIE-------SAKEMFSYGADMVSV 219 (233)
T ss_pred CCHH-------HHHHHHHcCCCEEEE
Confidence 2433 444455569999875
No 210
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.06 E-value=0.47 Score=46.66 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEeCCCc--------cchHHHHHHHHH---cCCceeeeccCCcccccccCCccccCC
Q 016682 166 ESSTNQAVDTAVRILKEGG-MDAIKLEGGS--------PSRITAARGIVE---AGIAVMGHVGLTPQAISVLGGFRPQGK 233 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaG-AdaVKLEgg~--------~e~~~~I~alv~---aGIPV~gHiGLtPQ~~~~lgGfrvqGr 233 (384)
+.+.+...++.-.++ +.| +++|-+=|.. +|..+.++..++ ..+||+.|+|-+
T Consensus 17 ~iD~~~~~~~i~~~i-~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~--------------- 80 (290)
T TIGR00683 17 TINEKGLRQIIRHNI-DKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSV--------------- 80 (290)
T ss_pred CcCHHHHHHHHHHHH-hCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCC---------------
Confidence 456777777776766 688 9999998753 666777777765 368998875411
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC---C---HHHH---HHHHhhc-CCCEEEEcCCCCCCchhh
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECV---P---PPVA---AAATSAL-QIPTIGIGAGPFCSGQVL 291 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~V---p---~ela---~~It~~l-~IPtIGIGAG~~cDGQvL 291 (384)
..++.++.++..+++|||+|++-.. + +++. ++|+++. ++|++-.-. |..-|.-|
T Consensus 81 ---~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~-P~~tg~~l 144 (290)
T TIGR00683 81 ---NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSI-PFLTGVNM 144 (290)
T ss_pred ---CHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeC-ccccccCc
Confidence 2357788999999999999998432 1 3443 4466667 699986643 33334433
No 211
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=94.05 E-value=0.099 Score=50.61 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=44.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEE
Q 016682 231 QGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 231 qGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGI 280 (384)
.|+-++.++.+++.|+.|+++||+.|++.|=. ..++..|-+.++||++.|
T Consensus 54 ~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhI 104 (230)
T COG1794 54 AGEWDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHI 104 (230)
T ss_pred cCccccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehH
Confidence 45566677889999999999999999999974 899999999999999987
No 212
>PRK15063 isocitrate lyase; Provisional
Probab=94.02 E-value=1.5 Score=46.17 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCCEEEecchhhh-hhccCCCCc-CCCHHHHHHHHHHHHcccC---CCcEE-E--eCC-------------
Q 016682 103 PSAVHLDSAGIDICLVGDSAAM-VVHGHDTTL-PITLEEMLVHCRAVARGAK---RPLLV-G--DLP------------- 161 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~m-v~lG~~dT~-~VtldeMl~h~raV~Rga~---~~~vv-a--DmP------------- 161 (384)
-..+.+.++|+-.|-.-|.+.. --.|+-.+. .|+.+||+...++++.+.+ .++++ | |-.
T Consensus 165 ~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD 244 (428)
T PRK15063 165 ELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERD 244 (428)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccc
Confidence 3477888999999999999752 344776664 8999999999999986643 24444 3 442
Q ss_pred --CC----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH---cCCc--eeeeccCCcccccc
Q 016682 162 --FG----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE---AGIA--VMGHVGLTPQAISV 224 (384)
Q Consensus 162 --fg----------sY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~---aGIP--V~gHiGLtPQ~~~~ 224 (384)
|- -|....+++|+-+.... + |||+|-+|.+ ....+.++.+++ .-+| ++.. |.+|.. +|
T Consensus 245 ~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa-~-GAD~iw~Et~-~~d~ee~~~fa~~v~~~~P~~~lay-n~sPsf-nW 319 (428)
T PRK15063 245 RPFITGERTAEGFYRVKAGIEQAIARGLAYA-P-YADLIWCETS-TPDLEEARRFAEAIHAKFPGKLLAY-NCSPSF-NW 319 (428)
T ss_pred cccccCCCccccccccccCHHHHHHHHHHHh-c-CCCEEEeCCC-CCCHHHHHHHHHhhcccCccceeec-CCCCCc-cc
Confidence 10 01235789999887765 6 9999999975 333444555554 3346 5544 777743 44
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 225 lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
...| +++. +-.=.+.|.+.|-..+++.
T Consensus 320 ~~~~-----~~~~---~~~f~~eL~~~Gy~~~~~~ 346 (428)
T PRK15063 320 KKNL-----DDAT---IAKFQRELGAMGYKFQFIT 346 (428)
T ss_pred cccc-----CHHH---HHHHHHHHHHcCceEEEec
Confidence 3222 3333 2223467788998777754
No 213
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.01 E-value=1.1 Score=42.43 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE-eCCCCCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva-DmPfgsY~~s~e~av~nA~rl~ 180 (384)
.+|+.+...|.-.| .-| +.+.++|+..++.|.|-- --.|..+..-..=+++.+..++
T Consensus 3 ~mA~Aa~~gGA~giR~~~---------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~ 61 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANG---------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALA 61 (192)
T ss_dssp HHHHHHHHCT-SEEEEES---------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHH
T ss_pred HHHHHHHHCCceEEEcCC---------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHH
Confidence 47888999999998 455 778899999999885542 2223333332333556667788
Q ss_pred HHhCCCEEEeCCCc----cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 181 KEGGMDAIKLEGGS----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 181 keaGAdaVKLEgg~----~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
++|||.|-|.+-. ....+.|+.+.+.+..+|+-+. | +++++.-+++|+|.|
T Consensus 62 -~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADis-----------------t-------~ee~~~A~~~G~D~I 116 (192)
T PF04131_consen 62 -EAGADIIALDATDRPRPETLEELIREIKEKYQLVMADIS-----------------T-------LEEAINAAELGFDII 116 (192)
T ss_dssp -HCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-S-----------------S-------HHHHHHHHHTT-SEE
T ss_pred -HcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecC-----------------C-------HHHHHHHHHcCCCEE
Confidence 6999999997642 3467888888888888886421 1 567777788888877
Q ss_pred Ee------cCC----C-HHHHHHHHhhcCCCEEE
Q 016682 257 VL------ECV----P-PPVAAAATSALQIPTIG 279 (384)
Q Consensus 257 vl------E~V----p-~ela~~It~~l~IPtIG 279 (384)
=- +.. | -++.+++.+. ++|+|.
T Consensus 117 ~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIa 149 (192)
T PF04131_consen 117 GTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIA 149 (192)
T ss_dssp E-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEE
T ss_pred EcccccCCCCCCCCCCCHHHHHHHHhC-CCcEee
Confidence 42 211 2 4777777775 788763
No 214
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=94.00 E-value=3.3 Score=41.64 Aligned_cols=120 Identities=22% Similarity=0.220 Sum_probs=72.7
Q ss_pred CcEE---EEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCC
Q 016682 92 EPIT---MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (384)
Q Consensus 92 ~~I~---mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s 168 (384)
-||+ |-++-|...|..+.++|-=-++.+ ..+.++.....+.++ +...+.+-++ . +
T Consensus 35 ~Piv~apM~~vt~~~ma~ava~~GglGvi~~--------------~~~~~~~~~~i~~vk---~~l~v~~~~~---~--~ 92 (325)
T cd00381 35 IPLVSAPMDTVTESEMAIAMARLGGIGVIHR--------------NMSIEEQAEEVRKVK---GRLLVGAAVG---T--R 92 (325)
T ss_pred CCEEecCCCcCCcHHHHHHHHHCCCEEEEeC--------------CCCHHHHHHHHHHhc---cCceEEEecC---C--C
Confidence 4654 347778888888878875333332 124577666666654 2222223332 2 2
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeC--CC-ccchHHHHHHHHHcC--CceeeeccCCcccccccCCccccCCCHHHHHHHHH
Q 016682 169 TNQAVDTAVRILKEGGMDAIKLE--GG-SPSRITAARGIVEAG--IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (384)
Q Consensus 169 ~e~av~nA~rl~keaGAdaVKLE--gg-~~e~~~~I~alv~aG--IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~ 243 (384)
++..+.+..++ ++|++.|-+. .| .....+.|+.+.+.+ +||+.. . .-| .+
T Consensus 93 -~~~~~~~~~l~-eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G------------~----v~t-------~~ 147 (325)
T cd00381 93 -EDDKERAEALV-EAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG------------N----VVT-------AE 147 (325)
T ss_pred -hhHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEEC------------C----CCC-------HH
Confidence 23455566777 5899987764 22 244578899999877 777631 0 012 34
Q ss_pred HHHHHHHcCCcEEEe
Q 016682 244 TALALQEVGCFSVVL 258 (384)
Q Consensus 244 rAkAleeAGAf~Ivl 258 (384)
.|+.+.++|||+|.+
T Consensus 148 ~A~~l~~aGaD~I~v 162 (325)
T cd00381 148 AARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHhcCCCEEEE
Confidence 677788999999997
No 215
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.96 E-value=0.63 Score=49.11 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=62.7
Q ss_pred CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCC-CCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCH
Q 016682 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~-dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~ 169 (384)
+-||.+=++-++..|+.+.++|+|+|-||-+-+....+.. +...++--+.+..++..++..+.| |++| |++ .++
T Consensus 269 ~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~-viad---GGi-~~~ 343 (486)
T PRK05567 269 DVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIP-VIAD---GGI-RYS 343 (486)
T ss_pred CCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCe-EEEc---CCC-CCH
Confidence 4588888999999999999999999988754432222221 112244455566666555544444 8899 778 478
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC
Q 016682 170 NQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 170 e~av~nA~rl~keaGAdaVKLE 191 (384)
.++ .+.+ +.||++|.+-
T Consensus 344 ~di----~kAl-a~GA~~v~~G 360 (486)
T PRK05567 344 GDI----AKAL-AAGASAVMLG 360 (486)
T ss_pred HHH----HHHH-HhCCCEEEEC
Confidence 887 4567 5899999983
No 216
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.96 E-value=0.3 Score=49.26 Aligned_cols=43 Identities=28% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcC-CcEEEecC------------C---------CHHHHHHHHhhcCCCEEEEc
Q 016682 239 VKVVETALALQEVG-CFSVVLEC------------V---------PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 239 ~~ll~rAkAleeAG-Af~IvlE~------------V---------p~ela~~It~~l~IPtIGIG 281 (384)
++.++-++.|+++| +|.|-+-+ . -.+.++.|.+.+++|+|+-|
T Consensus 228 ~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G 292 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAG 292 (343)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeC
Confidence 45677899999998 89887711 0 13678889999999988754
No 217
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.93 E-value=1.7 Score=42.46 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=62.6
Q ss_pred HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc-EEEeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 016682 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (384)
Q Consensus 107 iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~-vvaDmPfgsY~~s~e~av~nA~rl~keaGA 185 (384)
.+.++|+|.|-+.+++.- ++.+...++.++.. ..-+ +..++.+++. .+++...+.+.++. +.|+
T Consensus 99 ~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~-G~~v~~~i~~~~~~~-~~~~~~~~~~~~~~-~~Ga 163 (275)
T cd07937 99 KAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKA-GKHVEGAICYTGSPV-HTLEYYVKLAKELE-DMGA 163 (275)
T ss_pred HHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHC-CCeEEEEEEecCCCC-CCHHHHHHHHHHHH-HcCC
Confidence 456789999977765533 56677666665432 2221 2246666554 68888888777766 7999
Q ss_pred CEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 186 DAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 186 daVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
+.|.|-|-. .++.+.|+++.++ ++|+--|
T Consensus 164 ~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 198 (275)
T cd07937 164 DSICIKDMAGLLTPYAAYELVKALKKEVGLPIHLH 198 (275)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 999999852 4666777777753 6777766
No 218
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.89 E-value=7.5 Score=38.63 Aligned_cols=179 Identities=21% Similarity=0.275 Sum_probs=97.1
Q ss_pred HHHHhhhCC--CcEEEEecCC------hHHHHHHHHcCCCEEEecchhhh------hhc--cCC-CCcCCCHHHHHHHHH
Q 016682 83 HLRQKHKNG--EPITMVTAYD------YPSAVHLDSAGIDICLVGDSAAM------VVH--GHD-TTLPITLEEMLVHCR 145 (384)
Q Consensus 83 ~lr~~k~~g--~~I~mlTAyD------~~sA~iae~AGiD~IlVGDSl~m------v~l--G~~-dT~~VtldeMl~h~r 145 (384)
.|.+++..+ -.|+-+|+=| ....+.+.++|+|+|=.|--.+- +.+ +.. =...+|+++.++..+
T Consensus 7 ~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~ 86 (265)
T COG0159 7 KFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVE 86 (265)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 455555444 5788888877 22344557899999966521110 000 000 023688999999999
Q ss_pred HHH-cccCCCcEEEeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCccchH-HHHHHHHHcCCceeeeccCCccc
Q 016682 146 AVA-RGAKRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGSPSRI-TAARGIVEAGIAVMGHVGLTPQA 221 (384)
Q Consensus 146 aV~-Rga~~~~vvaDmPfgsY~~s~--e~av~nA~rl~keaGAdaVKLEgg~~e~~-~~I~alv~aGIPV~gHiGLtPQ~ 221 (384)
.++ .+...|++. ++| .|+ ...++.=.+..+++|+|+|-+-|=..|.. +..+...+.||..+
T Consensus 87 ~~r~~~~~~Pivl-----m~Y-~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I--------- 151 (265)
T COG0159 87 EIRAKGVKVPIVL-----MTY-YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI--------- 151 (265)
T ss_pred HHHhcCCCCCEEE-----EEe-ccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE---------
Confidence 998 446666544 344 344 23344334566789999999988543444 44555556776543
Q ss_pred ccccCCccccCCC-HHHHHHHHHHHHHH----HHcCCcEEEecCC--CHHHHHHHHhhcCCCEE-EEcC
Q 016682 222 ISVLGGFRPQGKN-VTSAVKVVETALAL----QEVGCFSVVLECV--PPPVAAAATSALQIPTI-GIGA 282 (384)
Q Consensus 222 ~~~lgGfrvqGrt-~~~a~~ll~rAkAl----eeAGAf~IvlE~V--p~ela~~It~~l~IPtI-GIGA 282 (384)
|.+--.| +++.+++.+.+.-+ --.|+-++=.+.. -.++.++|.+-.++|+. |+|=
T Consensus 152 ------~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGI 214 (265)
T COG0159 152 ------FLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGI 214 (265)
T ss_pred ------EEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCc
Confidence 1122223 33334443333211 1112222222211 15667778777889965 6653
No 219
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.79 E-value=0.6 Score=47.98 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=58.9
Q ss_pred HHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCC-cCCCHHHHHHHHHHHHcc------cC
Q 016682 81 LTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARG------AK 152 (384)
Q Consensus 81 ~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT-~~VtldeMl~h~raV~Rg------a~ 152 (384)
..++.+.++ .+-|++.=++.++..|+-+.++|+|+|.+|-..+....+...+ ..+++-..+.-+..+++. -.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~ 255 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGR 255 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCC
Confidence 444544443 3455544379999999988899999999985544322111111 123333334444333321 11
Q ss_pred CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 153 ~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
.-.|++| |++ .+..+. .+.+ ..||++|.+
T Consensus 256 ~vpVIAd---GGI-~~~~di----akAl-alGAd~Vm~ 284 (368)
T PRK08649 256 YVHVIAD---GGI-GTSGDI----AKAI-ACGADAVML 284 (368)
T ss_pred CCeEEEe---CCC-CCHHHH----HHHH-HcCCCeecc
Confidence 2339999 677 466666 3566 589999999
No 220
>PRK08227 autoinducer 2 aldolase; Validated
Probab=93.73 E-value=1.3 Score=43.77 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc---CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 108 LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 108 ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga---~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
+-+.|.|++.+. +.+| ++ .-.+|+.....|++-+ ..|++. =.|-|.+-.+..+.+..|.|+--|-|
T Consensus 103 AvrlGAdAV~~~-----v~~G-s~----~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELG 171 (264)
T PRK08227 103 AVRLNACAVAAQ-----VFIG-SE----YEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMG 171 (264)
T ss_pred HHHCCCCEEEEE-----EecC-CH----HHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHc
Confidence 346799988654 3334 12 2256776666665544 467555 45777765566679999999988999
Q ss_pred CCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 185 MDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 185 AdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
||.||+-=- -+..+.++++ .+||+ ..||-+. ++ +++++..+.--++||.++.+
T Consensus 172 ADiVK~~y~----~~~f~~vv~a~~vPVv-----------iaGG~k~---~~---~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 172 AQIIKTYYV----EEGFERITAGCPVPIV-----------IAGGKKL---PE---RDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred CCEEecCCC----HHHHHHHHHcCCCcEE-----------EeCCCCC---CH---HHHHHHHHHHHHcCCceeee
Confidence 999999532 2456666654 57876 3565422 22 56777777777799999875
No 221
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=93.73 E-value=1.8 Score=43.38 Aligned_cols=172 Identities=20% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHhhhCCCcEEE---EecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 84 LRQKHKNGEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 84 lr~~k~~g~~I~m---lTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
|-++..=.-||+. -..-+...|..+.+||.=-++ | ....+.+++-...+.++..++.| .-+++
T Consensus 4 ~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l----------~---~~~~~~~~l~~~i~~~~~~t~~p-fgvnl 69 (330)
T PF03060_consen 4 LTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFL----------G---AGGLTPEQLREEIRKIRALTDKP-FGVNL 69 (330)
T ss_dssp HHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEE----------E---CTTSSHHHHHHHHHHHHHH-SS--EEEEE
T ss_pred HHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeec----------c---ccccChHHHHHHHHHHHhhcccc-ccccc
Confidence 3444443456653 234445555555666632222 1 22445577777777777777776 56666
Q ss_pred CCCCCcCCHHHH--------HHHHHHHHHHhC--------------CCEEEeCCCccchHHHHHHHHHcCCceeeeccCC
Q 016682 161 PFGTYESSTNQA--------VDTAVRILKEGG--------------MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLT 218 (384)
Q Consensus 161 PfgsY~~s~e~a--------v~nA~rl~keaG--------------AdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLt 218 (384)
.+ .. .++... -....++..+.| ++.|-+-.| .-..+.|+.+.+.||.|+..++
T Consensus 70 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G-~p~~~~i~~l~~~gi~v~~~v~-- 144 (330)
T PF03060_consen 70 FL-PP-PDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFG-LPPPEVIERLHAAGIKVIPQVT-- 144 (330)
T ss_dssp ET-TS-TTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESS-SC-HHHHHHHHHTT-EEEEEES--
T ss_pred cc-cC-cccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecc-cchHHHHHHHHHcCCccccccC--
Confidence 65 22 233322 111222322334 448888766 3335778888889988875311
Q ss_pred cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC----------C--HHHHHHHHhhcCCCEEEEcCCCCC
Q 016682 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----------P--PPVAAAATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 219 PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----------p--~ela~~It~~l~IPtIGIGAG~~c 286 (384)
| ++.|+..+++|+|+|++|+. . ..+..++.+.++||+|. ||.=+
T Consensus 145 ---------------s-------~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia--AGGI~ 200 (330)
T PF03060_consen 145 ---------------S-------VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA--AGGIA 200 (330)
T ss_dssp ---------------S-------HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEE--ESS--
T ss_pred ---------------C-------HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEE--ecCcC
Confidence 2 44677889999999999964 1 46677888999999874 77777
Q ss_pred CchhhhHhhhhc
Q 016682 287 SGQVLVYHDLLG 298 (384)
Q Consensus 287 DGQvLV~~DlLG 298 (384)
||+=+...=.||
T Consensus 201 dg~~iaaal~lG 212 (330)
T PF03060_consen 201 DGRGIAAALALG 212 (330)
T ss_dssp SHHHHHHHHHCT
T ss_pred CHHHHHHHHHcC
Confidence 887554443344
No 222
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.72 E-value=0.64 Score=44.41 Aligned_cols=103 Identities=24% Similarity=0.309 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCC
Q 016682 139 EMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLT 218 (384)
Q Consensus 139 eMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLt 218 (384)
+....++.+|+..+.+|++-| ..+-| .+.|||+|+|... +.-....+++.
T Consensus 52 ~~a~~~~~lc~~~~v~liINd--------~~dlA--------~~~~AdGVHlGq~-D~~~~~ar~~~------------- 101 (211)
T COG0352 52 ALAEKLRALCQKYGVPLIIND--------RVDLA--------LAVGADGVHLGQD-DMPLAEARELL------------- 101 (211)
T ss_pred HHHHHHHHHHHHhCCeEEecC--------cHHHH--------HhCCCCEEEcCCc-ccchHHHHHhc-------------
Confidence 556778899999988988755 12233 3689999999544 33333344433
Q ss_pred cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC---------C---HHHHHHHHhhcCCCEEEEcC
Q 016682 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV---------P---PPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 219 PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V---------p---~ela~~It~~l~IPtIGIGA 282 (384)
+..++.|.+.. -+++++..++.|+|-|.+=.| | .+..+++.+..+||++.||.
T Consensus 102 -------~~~~iIG~S~h----~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGG 166 (211)
T COG0352 102 -------GPGLIIGLSTH----DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGG 166 (211)
T ss_pred -------CCCCEEEeecC----CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcC
Confidence 33345555432 255677778889999986322 2 57778899989999999994
No 223
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.71 E-value=0.63 Score=46.39 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=57.3
Q ss_pred HHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 83 ~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
.++++|+.| ..++.++.+...|+.++++|+|+|.+ |- ..-||.. ..+. +...+.|++..+.| |+++
T Consensus 101 ~i~~lk~~g-~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~----eagGh~g--~~~~---~~ll~~v~~~~~iP-viaa-- 167 (307)
T TIGR03151 101 YIPRLKENG-VKVIPVVASVALAKRMEKAGADAVIAEGM----ESGGHIG--ELTT---MALVPQVVDAVSIP-VIAA-- 167 (307)
T ss_pred HHHHHHHcC-CEEEEEcCCHHHHHHHHHcCCCEEEEECc----ccCCCCC--CCcH---HHHHHHHHHHhCCC-EEEE--
Confidence 455666665 45678999999999999999999964 42 2223321 1221 33445566666667 6665
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|+. .+.+++ ...+ +.||++|.+
T Consensus 168 -GGI-~~~~~~----~~al-~~GA~gV~i 189 (307)
T TIGR03151 168 -GGI-ADGRGM----AAAF-ALGAEAVQM 189 (307)
T ss_pred -CCC-CCHHHH----HHHH-HcCCCEeec
Confidence 666 466665 3466 489999988
No 224
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.69 E-value=0.77 Score=48.02 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred HHHHhhhC--CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 83 HLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 83 ~lr~~k~~--g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
.+++.++. .-+|.+=|+-+...|+.+-++|+|+|-||=+.|.......- ...++.-..+..+..+++..+.| |++|
T Consensus 255 ~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp-viad 333 (450)
T TIGR01302 255 SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP-VIAD 333 (450)
T ss_pred HHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe-EEEe
Confidence 34444443 34555559999999999999999999887433322211110 11222334556666666656656 9999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
|++ .++.++ .+.+ +.||++|.+-
T Consensus 334 ---GGi-~~~~di----~kAl-a~GA~~V~~G 356 (450)
T TIGR01302 334 ---GGI-RYSGDI----VKAL-AAGADAVMLG 356 (450)
T ss_pred ---CCC-CCHHHH----HHHH-HcCCCEEEEC
Confidence 777 477777 4577 6899999993
No 225
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.55 Score=46.00 Aligned_cols=140 Identities=26% Similarity=0.325 Sum_probs=88.4
Q ss_pred CCCcCCHHHHHHHHHHHHHH-hCCCEEEeCC---Cc---cchHHH---HHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 163 GTYESSTNQAVDTAVRILKE-GGMDAIKLEG---GS---PSRITA---ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~ke-aGAdaVKLEg---g~---~e~~~~---I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
|.| |.++|++.| |+-+| .+-+-||||= .. ++..++ -+.|++.|.-|+-- +
T Consensus 78 Gc~--taeEAv~tA-rlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY----------~------- 137 (262)
T COG2022 78 GCR--TAEEAVRTA-RLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPY----------T------- 137 (262)
T ss_pred ccC--CHHHHHHHH-HHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeec----------c-------
Confidence 555 899999988 55555 4579999992 21 333444 44566778776521 1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC---------HHHHHHHHhhcCCCEE---EEcCCCC--------CCchhhh
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVVLECVP---------PPVAAAATSALQIPTI---GIGAGPF--------CSGQVLV 292 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~IvlE~Vp---------~ela~~It~~l~IPtI---GIGAG~~--------cDGQvLV 292 (384)
++| .--|++|+++||-+|..=|-| ..-++.|.++.+||+| |||.-++ ||+ ||+
T Consensus 138 -~dD-----~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~Da-VL~ 210 (262)
T COG2022 138 -TDD-----PVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADA-VLL 210 (262)
T ss_pred -CCC-----HHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccce-eeh
Confidence 111 225889999999998865544 5777999999999998 7777653 777 555
Q ss_pred HhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCC
Q 016682 293 YHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPS 343 (384)
Q Consensus 293 ~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~ 343 (384)
-.-+-+-. ..++-++. +.-|+.+=+..-.+|.-|...
T Consensus 211 NTAiA~A~-------DPv~MA~A-------f~~Av~AGrlAylAG~~~~r~ 247 (262)
T COG2022 211 NTAIARAK-------DPVAMARA-------FALAVEAGRLAYLAGRIPKRD 247 (262)
T ss_pred hhHhhccC-------ChHHHHHH-------HHHHHHHhHHHHHcCCCcccc
Confidence 44444422 22444444 344555545555566666553
No 226
>TIGR03586 PseI pseudaminic acid synthase.
Probab=93.68 E-value=1.3 Score=44.96 Aligned_cols=152 Identities=16% Similarity=0.275 Sum_probs=0.0
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHH
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a 238 (384)
.|+|.+---+.+.+ .++.+-|++++||--+.--..+.++++.+.|.||+ ..+.-...
T Consensus 90 Gi~~~stpfd~~sv-----d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvi------------------lstG~~t~ 146 (327)
T TIGR03586 90 GLTIFSSPFDETAV-----DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPII------------------MSTGIATL 146 (327)
T ss_pred CCcEEEccCCHHHH-----HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEE------------------EECCCCCH
Q ss_pred HHHHHHHHHHHHcCC-cEEEecCCCH----------HHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCC
Q 016682 239 VKVVETALALQEVGC-FSVVLECVPP----------PVAAAATSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAK 307 (384)
Q Consensus 239 ~~ll~rAkAleeAGA-f~IvlE~Vp~----------ela~~It~~l~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~ 307 (384)
+++.+-+..++++|+ ..++++|+.. ..+..+.+..++| +|+ +. ++.| +.+.-=-..+. +.
T Consensus 147 ~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~p-VG~-SD-Ht~G-~~~~~aAva~G-----A~ 217 (327)
T TIGR03586 147 EEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVP-VGL-SD-HTLG-ILAPVAAVALG-----AC 217 (327)
T ss_pred HHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCC-EEe-eC-CCCc-hHHHHHHHHcC-----CC
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHhccCCCCCCCCCCccCChhhHHHHHHHHHh
Q 016682 308 VTPKFCKQFARVGDVINKALLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQK 363 (384)
Q Consensus 308 ~~PkFvk~y~~~~~~~~~A~~~y~~eV~~g~FP~~~h~~y~~~~~e~~~f~~~~~~ 363 (384)
.+=|+... +..-|.++|. ++++++|++++.+.++.
T Consensus 218 iIEkH~tl--------------------d~~l~G~D~~-~Sl~p~e~~~lv~~ir~ 252 (327)
T TIGR03586 218 VIEKHFTL--------------------DRSDGGVDSA-FSLEPDEFKALVKEVRN 252 (327)
T ss_pred EEEeCCCh--------------------hhcCCCCChh-ccCCHHHHHHHHHHHHH
No 227
>PLN02417 dihydrodipicolinate synthase
Probab=93.63 E-value=0.54 Score=45.97 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=62.2
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHHh
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~kea 183 (384)
|+.++++|+|.+++-- |.-...|-++++.|.+.|++.+ |+++=|.|. -++..+++.. .++.+--
T Consensus 89 a~~a~~~Gadav~~~~---------P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l----~~l~~~p 153 (280)
T PLN02417 89 TEQGFAVGMHAALHIN---------PYYGKTSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVI----FKIAQHP 153 (280)
T ss_pred HHHHHHcCCCEEEEcC---------CccCCCCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHH----HHHhcCC
Confidence 5667899999998753 2233457899999999999965 988999994 4566777755 3555445
Q ss_pred CCCEEEeCCCccchHHHHHHHHHcCCce
Q 016682 184 GMDAIKLEGGSPSRITAARGIVEAGIAV 211 (384)
Q Consensus 184 GAdaVKLEgg~~e~~~~I~alv~aGIPV 211 (384)
...+||-..+ . ..+..+...++.|
T Consensus 154 ni~giKdss~-~---~~~~~~~~~~~~v 177 (280)
T PLN02417 154 NFAGVKECTG-N---DRVKQYTEKGILL 177 (280)
T ss_pred CEEEEEeCCC-c---HHHHHHhcCCeEE
Confidence 6899998776 3 4455544444444
No 228
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.63 E-value=8.1 Score=38.16 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=68.2
Q ss_pred hhhccCCCCcCCCHHHHHHHHHHHHcc---cCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh--CCCEEEeCCC-----
Q 016682 124 MVVHGHDTTLPITLEEMLVHCRAVARG---AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG--GMDAIKLEGG----- 193 (384)
Q Consensus 124 mv~lG~~dT~~VtldeMl~h~raV~Rg---a~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea--GAdaVKLEgg----- 193 (384)
....|+++ -.+|..+.+.+...+. .+.| |++.+- + ++++.++.+.++.+.. |+|+|-|-=+
T Consensus 63 ~N~~G~~n---~g~~~~~~~i~~~~~~~~~~~~p-vivsi~--g---~~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~ 133 (294)
T cd04741 63 INSLGLPN---LGLDYYLEYIRTISDGLPGSAKP-FFISVT--G---SAEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP 133 (294)
T ss_pred cccccCCC---cCHHHHHHHHHHHhhhccccCCe-EEEECC--C---CHHHHHHHHHHHHhhccccccEEEEECCCCCCC
Confidence 34556666 4588888888876543 3445 777762 1 2788888887776434 7998866321
Q ss_pred --------ccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHc--CCcEEEe
Q 016682 194 --------SPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV--GCFSVVL 258 (384)
Q Consensus 194 --------~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA--GAf~Ivl 258 (384)
.+...+.+++++++ .|||.-= |+|. + +. .++.+-|+.++++ |+++|.+
T Consensus 134 ~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK--l~p~-------~-----~~---~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 134 GKPPPAYDFDATLEYLTAVKAAYSIPVGVK--TPPY-------T-----DP---AQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred CcccccCCHHHHHHHHHHHHHhcCCCEEEE--eCCC-------C-----CH---HHHHHHHHHHhccccCCcEEEE
Confidence 13355666666654 7898753 2221 1 21 2456677788888 9998883
No 229
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.62 E-value=0.52 Score=46.14 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=64.4
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e~av~nA~rl~ke 182 (384)
.|+.++++|+|.+++-- |.-...+-++++.|.+.|++.++.|+++=|.|. .++..+++... +|.+-
T Consensus 91 ~a~~a~~~Gad~v~v~~---------P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~----~L~~~ 157 (293)
T PRK04147 91 LAKYATELGYDAISAVT---------PFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFN----ELFTL 157 (293)
T ss_pred HHHHHHHcCCCEEEEeC---------CcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHH----HHhcC
Confidence 46888999999998652 223345679999999999999999999999994 46667777553 45543
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||...+ . ...+..+.+
T Consensus 158 pnvvgiK~s~~-d--~~~~~~~~~ 178 (293)
T PRK04147 158 PKVIGVKQTAG-D--LYQLERIRK 178 (293)
T ss_pred CCEEEEEeCCC-C--HHHHHHHHH
Confidence 57899999876 2 344555543
No 230
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=93.59 E-value=2 Score=42.63 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=69.2
Q ss_pred CcEEEeCC-CCC-----------CcCCHHHHHHH---HHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHc--CCceeee
Q 016682 154 PLLVGDLP-FGT-----------YESSTNQAVDT---AVRILKEGGMDAIKLEGGS--PSRITAARGIVEA--GIAVMGH 214 (384)
Q Consensus 154 ~~vvaDmP-fgs-----------Y~~s~e~av~n---A~rl~keaGAdaVKLEgg~--~e~~~~I~alv~a--GIPV~gH 214 (384)
.+|.++|+ +|. |..+.++..+. -++.+.++|+|.+-+|--. .|....++++.+. ++||+.-
T Consensus 108 ~~VaGsiGP~g~~l~~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is 187 (304)
T PRK09485 108 PLVAGSVGPYGAYLADGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLS 187 (304)
T ss_pred ceEEEecCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 67889994 442 33355655433 1344557999999999642 4555566666655 8999965
Q ss_pred ccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCCH----HHHHHHHhhcCCCEEEE
Q 016682 215 VGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPP----PVAAAATSALQIPTIGI 280 (384)
Q Consensus 215 iGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~----ela~~It~~l~IPtIGI 280 (384)
+=+. .+|...-|.+.+++.+.+. +..++++|-+=|..+ ++.+.+.+.++.|++..
T Consensus 188 ~~~~------~~g~l~~G~~~~~~~~~l~-----~~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~ 246 (304)
T PRK09485 188 FTLR------DGTHISDGTPLAEAAALLA-----ASPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVY 246 (304)
T ss_pred EEeC------CCCcCCCCCCHHHHHHHHh-----cCCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEE
Confidence 3222 2344455666544443332 123578898999843 34445555567786655
No 231
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=93.54 E-value=0.62 Score=46.57 Aligned_cols=103 Identities=25% Similarity=0.311 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEe-C---------CCc--cchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCC
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKL-E---------GGS--PSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGK 233 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKL-E---------gg~--~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGr 233 (384)
.|+||| ++-+++||-+|.- | ||. ..-.+.|+.+.+ -.|||||. +--||
T Consensus 18 ~~~eqa-----~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~---------~kigh----- 78 (287)
T TIGR00343 18 VNPEQA-----KIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAK---------VRIGH----- 78 (287)
T ss_pred CCHHHH-----HHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEE---------eeccH-----
Confidence 589999 7888999988864 4 442 122344455443 38999986 22233
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecC-C--C-HHHHHHHHhhcCCCEEEEcCCCCCCchhhhH----hhhhcCC
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLEC-V--P-PPVAAAATSALQIPTIGIGAGPFCSGQVLVY----HDLLGMM 300 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~-V--p-~ela~~It~~l~IPtIGIGAG~~cDGQvLV~----~DlLG~~ 300 (384)
+..|+.|+++|+|.|= |. + | .++...+-+..++|.+ ||..|=|.-|-- -||+|-+
T Consensus 79 --------~~Ea~~L~~~GvDiID-eTe~lrPade~~~~~K~~f~vpfm---ad~~~l~EAlrai~~GadmI~Tt 141 (287)
T TIGR00343 79 --------FVEAQILEALGVDYID-ESEVLTPADWTFHIDKKKFKVPFV---CGARDLGEALRRINEGAAMIRTK 141 (287)
T ss_pred --------HHHHHHHHHcCCCEEE-ccCCCCcHHHHHHHHHHHcCCCEE---ccCCCHHHHHHHHHCCCCEEecc
Confidence 8899999999999993 42 2 5 6778888788899988 454443443332 4566654
No 232
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.50 E-value=3.9 Score=39.88 Aligned_cols=117 Identities=15% Similarity=0.035 Sum_probs=75.3
Q ss_pred HHHHHHhhhCCCcEEEEe-c--CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHc-ccCCCcE
Q 016682 81 LTHLRQKHKNGEPITMVT-A--YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GAKRPLL 156 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlT-A--yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~R-ga~~~~v 156 (384)
+..+.+..+.+.+|.+.. + +|..--..+.++|+|.|-+.+.. -.++++...++.++. |. .|
T Consensus 61 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~---~v 125 (266)
T cd07944 61 LRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGY---EV 125 (266)
T ss_pred HHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCC---eE
Confidence 334444432234555543 2 24455566678899998776533 157888888887753 33 25
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C--Cceeee
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G--IAVMGH 214 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G--IPV~gH 214 (384)
.+.+.+ ++..+++..++.+.++. +.|++.|.|-|-. .++.+.++++.+. + ||+--|
T Consensus 126 ~~~~~~-a~~~~~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H 189 (266)
T cd07944 126 FFNLMA-ISGYSDEELLELLELVN-EIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH 189 (266)
T ss_pred EEEEEe-ecCCCHHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 566655 34457888888777765 7999999999852 5666777777753 4 777666
No 233
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=93.46 E-value=1.3 Score=45.49 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE-Eecch---hhhhhcc-----CCC--Cc--CCCHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS---AAMVVHG-----HDT--TL--PITLEEMLVH 143 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I-lVGDS---l~mv~lG-----~~d--T~--~VtldeMl~h 143 (384)
+.+|..++.+..+. | .-.|+.+.+||||.| +=+-. +-.-.|- ..| ++ .=-+.-+++.
T Consensus 138 ~~mt~~eI~~ii~~---------f-~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~ei 207 (382)
T cd02931 138 RELTTEEVETFVGK---------F-GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEI 207 (382)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHH
Confidence 56888888877643 1 347888999999999 43311 2111110 011 11 1123345667
Q ss_pred HHHHHcccCCCcEE-EeC-------------------CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccc-------
Q 016682 144 CRAVARGAKRPLLV-GDL-------------------PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS------- 196 (384)
Q Consensus 144 ~raV~Rga~~~~vv-aDm-------------------PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e------- 196 (384)
.++|++.++.-|.+ .=| -.++ .+.+++++-+.++- +.|+|.|.+-+|..+
T Consensus 208 i~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g--~~~e~~~~~~~~l~-~~gvD~l~vs~g~~~~~~~~~~ 284 (382)
T cd02931 208 VEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKG--RDLEEGLKAAKILE-EAGYDALDVDAGSYDAWYWNHP 284 (382)
T ss_pred HHHHHHhcCCCceEEEEEechhhccccccccccccccccCC--CCHHHHHHHHHHHH-HhCCCEEEeCCCCCcccccccC
Confidence 77888877544332 211 0123 37888888776654 789999999876310
Q ss_pred --------hHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHH
Q 016682 197 --------RITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPP 264 (384)
Q Consensus 197 --------~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~e 264 (384)
..+.++.+.+ .+|||++. |++ +|.+.++++ +++-+||+|-+= .+ .++
T Consensus 285 ~~~~~~~~~~~~~~~ik~~~~~pvi~~-----------G~i----~~~~~~~~~------l~~g~~D~V~~gR~~ladP~ 343 (382)
T cd02931 285 PMYQKKGMYLPYCKALKEVVDVPVIMA-----------GRM----EDPELASEA------INEGIADMISLGRPLLADPD 343 (382)
T ss_pred CccCCcchhHHHHHHHHHHCCCCEEEe-----------CCC----CCHHHHHHH------HHcCCCCeeeechHhHhCcc
Confidence 0233344433 37898853 444 244444443 344558888764 22 466
Q ss_pred HHHHHHhhcCCCE-EEEcCCCCC
Q 016682 265 VAAAATSALQIPT-IGIGAGPFC 286 (384)
Q Consensus 265 la~~It~~l~IPt-IGIGAG~~c 286 (384)
+.+.+.+.-.-++ --|++..+|
T Consensus 344 l~~k~~~g~~~~i~~Ci~Cn~~C 366 (382)
T cd02931 344 VVNKIRRGRFKNIRPCISCHDGC 366 (382)
T ss_pred HHHHHHcCCcccCcCChhhHHHH
Confidence 7677665432222 244554445
No 234
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=93.46 E-value=1.5 Score=44.66 Aligned_cols=151 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccCCCCcCCCHHHHHHHHHHH-HcccCCCcEEEeC-----CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHH
Q 016682 127 HGHDTTLPITLEEMLVHCRAV-ARGAKRPLLVGDL-----PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITA 200 (384)
Q Consensus 127 lG~~dT~~VtldeMl~h~raV-~Rga~~~~vvaDm-----PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~ 200 (384)
-.+|...-.++++++.+++.. ..|.+ .++.--. +.|+...+++..+..|+|.+|+.--+.+-+-|=. ..+
T Consensus 48 ~smPg~~r~s~d~l~~~v~~~~~~Gi~-av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVc--Lc~- 123 (323)
T PRK09283 48 PSMPGVYRLSIDLLVKEAEEAVELGIP-AVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVC--LDE- 123 (323)
T ss_pred CCCCCceeeCHHHHHHHHHHHHHCCCC-EEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeee--ccC-
Confidence 445555666666666665543 33332 2232221 2244444455555555555555433433333210 000
Q ss_pred HHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc------
Q 016682 201 ARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL------ 273 (384)
Q Consensus 201 I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l------ 273 (384)
----||.|+.-. |. + -+++..+.+.+.|..+.+||||+|=.-.. +-.+ ..|.+.|
T Consensus 124 --------YT~hGHcGil~~------g~-i--dND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV-~aIR~aLd~~g~~ 185 (323)
T PRK09283 124 --------YTSHGHCGILED------GY-V--DNDETLELLAKQALSQAEAGADIVAPSDMMDGRV-GAIREALDEAGFT 185 (323)
T ss_pred --------CCCCCceecccC------Cc-C--cCHHHHHHHHHHHHHHHHhCCCEEEcccccccHH-HHHHHHHHHCCCC
Confidence 011256665431 11 1 16677788999999999999998876544 4333 5555554
Q ss_pred CCCEEEEcCCCCCCchhhhHhhhhcCC
Q 016682 274 QIPTIGIGAGPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 274 ~IPtIGIGAG~~cDGQvLV~~DlLG~~ 300 (384)
++|+++.. ..+++.=.==+-|.+|-.
T Consensus 186 ~v~ImSYs-aKyaS~fYGPFRdA~~Sa 211 (323)
T PRK09283 186 DVPIMSYS-AKYASAFYGPFRDAAGSA 211 (323)
T ss_pred CCceeecH-HHHHHhhhHHHHHHHhcC
Confidence 46666553 344444333445666654
No 235
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.45 E-value=1.6 Score=42.22 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=113.8
Q ss_pred CCCCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC
Q 016682 75 PNQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (384)
Q Consensus 75 ~~~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~ 154 (384)
+-+++|..+|++|- +|...-|..+..+|+|+|.-|=..|..+.|..- =.|+... +-...+.|
T Consensus 40 pl~~VT~EeL~~M~----------~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~-----d~ei~~~---ie~~~~v~ 101 (238)
T COG3473 40 PLKNVTPEELLKME----------SYTERAALELADAGVDVIVYGCTSGSLIGGPGY-----DKEIAQR---IEEAKGVP 101 (238)
T ss_pred ccccCCHHHHHHHH----------HHHHHHHHhcCccccCEEEEeccceeeecCCch-----hHHHHHH---HHhccCCc
Confidence 44679999999885 366778888999999999766555555555332 1233333 33334434
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-cc-hHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-PS-RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-~e-~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
++ ++.-|+-++.+ .-|+.=|-+=--. +| .-.-++.+...|+.|.--.||-=.. =+=.|
T Consensus 102 -vv----------Tts~Avv~aL~---al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~d------n~eig 161 (238)
T COG3473 102 -VV----------TTSTAVVEALN---ALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITD------NLEIG 161 (238)
T ss_pred -ee----------echHHHHHHHH---hhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcc------cchhc
Confidence 21 22334444444 4477766653210 11 1234667778999987554432211 11245
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHhhcCCCEEEEcCCCCCCchhhhHhhh--hcCC
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIGIGAGPFCSGQVLVYHDL--LGMM 300 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~IvlE~Vp---~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~Dl--LG~~ 300 (384)
|-+ -..+++-|+.+-.-|+|+||+-|.. .+++..|-+.+++|++ ++-|---|.-| +|+.
T Consensus 162 r~~--P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVv-------sSN~AT~W~~Lr~~g~~ 225 (238)
T COG3473 162 RQE--PWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVV-------SSNQATLWMALRLIGLR 225 (238)
T ss_pred ccC--hHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCcee-------eccHHHHHHHHHHcCCc
Confidence 532 2578889999999999999999983 7999999999999999 45555555543 5554
No 236
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=93.41 E-value=4.4 Score=41.71 Aligned_cols=194 Identities=21% Similarity=0.259 Sum_probs=110.9
Q ss_pred HHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHcCCceeeec
Q 016682 144 CRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEAGIAVMGHV 215 (384)
Q Consensus 144 ~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~aGIPV~gHi 215 (384)
+|.+...-++|++..=+ =.. +.|+++.-+.+.++. .+|+|.||--+.. +|.++.+...++.=-.
T Consensus 117 ~R~~lgv~~rPl~~tii-KP~-GL~~~~~a~~~~~~~-~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~----- 188 (364)
T cd08210 117 LRALLGIPERPLLCSAL-KPQ-GLSAAELAELAYAFA-LGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANA----- 188 (364)
T ss_pred HHHHhCCCCCceEEEEe-ccc-cCCHHHHHHHHHHHH-hcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHh-----
Confidence 45565666788655333 223 579999999999999 5999999986542 3444444444421000
Q ss_pred cCCcccccccCC--ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcC-CCEEEE--cCCCCCCc
Q 016682 216 GLTPQAISVLGG--FRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQ-IPTIGI--GAGPFCSG 288 (384)
Q Consensus 216 GLtPQ~~~~lgG--frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~-IPtIGI--GAG~~cDG 288 (384)
..|+ ....+-|.+ ..+++++|+..+++||+++.+-.+. -.....+++... +|+..- ++|..+..
T Consensus 189 --------eTG~~~~y~~Nita~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~ 259 (364)
T cd08210 189 --------ETGGRTLYAPNVTGP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVSS 259 (364)
T ss_pred --------hcCCcceEEEecCCC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEccccccccccC
Confidence 0111 011222332 4599999999999999999988775 355677788888 998887 55544422
Q ss_pred h--h---hhH---hhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHhc--cCCCCCCCCCCccCChhhHHHHH
Q 016682 289 Q--V---LVY---HDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEEVT--NGSFPGPSHSPYKMSSSDCNGFF 358 (384)
Q Consensus 289 Q--v---LV~---~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~eV~--~g~FP~~~h~~y~~~~~e~~~f~ 358 (384)
- + +|+ ..+.|.. --.+|++.-+|.--.++..+-...+.+++. ...||.+.- .|....+.++.
T Consensus 260 ~~~is~~~~~~kl~RlaGad-----~~~~~~~~g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sg---G~~~~~v~~l~ 331 (364)
T cd08210 260 GDGISHALLFGTLFRLAGAD-----AVIFPNYGGRFGFSREECQAIADACRRPMGGLKPILPAPGG---GMSVERAPEMV 331 (364)
T ss_pred CCcccHHHHHHHHHHHhCCC-----EEEeCCCcCCccCCHHHHHHHHHHhcCCccccCCCcCcCCC---CcCHHHHHHHH
Confidence 1 1 223 3455654 123455555554333333332222233322 244565432 25556777777
Q ss_pred HHHH
Q 016682 359 NELQ 362 (384)
Q Consensus 359 ~~~~ 362 (384)
+.+.
T Consensus 332 ~~~G 335 (364)
T cd08210 332 ELYG 335 (364)
T ss_pred HHcC
Confidence 7765
No 237
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.40 E-value=0.91 Score=46.26 Aligned_cols=104 Identities=20% Similarity=0.147 Sum_probs=63.8
Q ss_pred HHHHHHHhCCCEEEeC-----CCc----cchHHHHHHHH----HcCCceeeeccCCccccccc-CCccccCCCHHHHHHH
Q 016682 176 AVRILKEGGMDAIKLE-----GGS----PSRITAARGIV----EAGIAVMGHVGLTPQAISVL-GGFRPQGKNVTSAVKV 241 (384)
Q Consensus 176 A~rl~keaGAdaVKLE-----gg~----~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~l-gGfrvqGrt~~~a~~l 241 (384)
+.+++ +.|||+||+= +.. .++...|+++. +.|||++..+= ++..-... .. .-.++. .-+.+
T Consensus 112 ve~a~-~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l-~y~~~~~~~~~-~~~a~~--~p~~V 186 (340)
T PRK12858 112 VRRIK-EAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPL-TYDGKGSDKKA-EEFAKV--KPEKV 186 (340)
T ss_pred HHHHH-HcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEe-ccCCCcccccc-cccccc--CHHHH
Confidence 34444 7899999992 311 13444455544 58999997421 22110000 00 000111 23577
Q ss_pred HHHHHHHH--HcCCcEEEecCC-CH-------------------HHHHHHHhhcCCCEEEEcCCC
Q 016682 242 VETALALQ--EVGCFSVVLECV-PP-------------------PVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 242 l~rAkAle--eAGAf~IvlE~V-p~-------------------ela~~It~~l~IPtIGIGAG~ 284 (384)
+.-++.+. +.|+|.+=+|-. .. +..+++++..++|.+-.|+|.
T Consensus 187 ~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 187 IKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred HHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 77888888 499999988754 11 567888999999999999997
No 238
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.39 E-value=1.4 Score=44.50 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=90.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE-E-e--cc------h-hhhhh-ccCCCCcCCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-L-V--GD------S-AAMVV-HGHDTTLPITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I-l-V--GD------S-l~mv~-lG~~dT~~VtldeMl~h~ 144 (384)
+.+|..++.+..+. | .-.|+.+.+||||.| + . |. | ..+.. -+|-....=.+.-.++..
T Consensus 129 ~~mt~~eI~~ii~~---------f-~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 198 (343)
T cd04734 129 KAMEEEDIEEIIAA---------F-ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVL 198 (343)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHH
Confidence 46899999887653 1 246778899999999 3 2 21 1 11111 111111222234556777
Q ss_pred HHHHcccCCCcEE-EeCCCCCC---cCCHHHHHHHHHHHHHHhC-CCEEEeCCCcc------------------chHHHH
Q 016682 145 RAVARGAKRPLLV-GDLPFGTY---ESSTNQAVDTAVRILKEGG-MDAIKLEGGSP------------------SRITAA 201 (384)
Q Consensus 145 raV~Rga~~~~vv-aDmPfgsY---~~s~e~av~nA~rl~keaG-AdaVKLEgg~~------------------e~~~~I 201 (384)
++|++.++.+|.+ .=+..-.| +.+.+++++.+.+|- +.| +|.|.+-+|.. ...+.+
T Consensus 199 ~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~-~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (343)
T cd04734 199 AAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA-AEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLA 277 (343)
T ss_pred HHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH-hcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHH
Confidence 8888888766543 33322111 136888888776655 677 89999955411 012333
Q ss_pred HHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhh
Q 016682 202 RGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSA 272 (384)
Q Consensus 202 ~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~ 272 (384)
+.+.+ .+|||++. |++ +|.+.+++++ ++-+||+|.+= .+ .+++...+.+.
T Consensus 278 ~~ik~~~~ipvi~~-----------G~i----~~~~~~~~~l------~~~~~D~V~~gR~~ladP~l~~k~~~g 331 (343)
T cd04734 278 ARIKQAVDLPVFHA-----------GRI----RDPAEAEQAL------AAGHADMVGMTRAHIADPHLVAKAREG 331 (343)
T ss_pred HHHHHHcCCCEEee-----------CCC----CCHHHHHHHH------HcCCCCeeeecHHhHhCccHHHHHHcC
Confidence 44433 37888753 333 2444444443 34568877764 22 35665665543
No 239
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.37 E-value=1.9 Score=43.13 Aligned_cols=81 Identities=21% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHHcC--CCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-----CCcEEEeCCCCCCcCCHHHHHHHH
Q 016682 104 SAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-----RPLLVGDLPFGTYESSTNQAVDTA 176 (384)
Q Consensus 104 sA~iae~AG--iD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-----~~~vvaDmPfgsY~~s~e~av~nA 176 (384)
.+.++++++ +|.|-.--|--++. |... .-..+.+...+++|++.++ .| |.+=|+. + .+.++..+-|
T Consensus 150 ~~~~~~~~~~~ad~ielN~scP~~~-g~~~--~~~~~~~~~iv~av~~~~~~~~~~~P-v~vKl~~--~-~~~~~~~~ia 222 (327)
T cd04738 150 YVIGVRKLGPYADYLVVNVSSPNTP-GLRD--LQGKEALRELLTAVKEERNKLGKKVP-LLVKIAP--D-LSDEELEDIA 222 (327)
T ss_pred HHHHHHHHHhhCCEEEEECCCCCCC-cccc--ccCHHHHHHHHHHHHHHHhhcccCCC-eEEEeCC--C-CCHHHHHHHH
Confidence 566666655 89885432222221 2221 2344566667778877764 56 6666653 2 2445555555
Q ss_pred HHHHHHhCCCEEEeCC
Q 016682 177 VRILKEGGMDAIKLEG 192 (384)
Q Consensus 177 ~rl~keaGAdaVKLEg 192 (384)
.. ++++|||+|.+-+
T Consensus 223 ~~-l~~aGad~I~~~n 237 (327)
T cd04738 223 DV-ALEHGVDGIIATN 237 (327)
T ss_pred HH-HHHcCCcEEEEEC
Confidence 44 5589999999765
No 240
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.32 E-value=2 Score=44.02 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=99.7
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCC-------hHHHHHHH---HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHH
Q 016682 78 RVTLTHLRQKHK-NGEPITMVTAYD-------YPSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRA 146 (384)
Q Consensus 78 ~~t~~~lr~~k~-~g~~I~mlTAyD-------~~sA~iae---~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~ra 146 (384)
+.-+.-+|++.. .++|+++- ..+ ...|++++ +.|+|.|..--++ .+--..+++|=+..++.
T Consensus 115 ~fGi~g~R~~~gv~~rPli~T-i~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~-------ge~~~~~~eER~~~v~~ 186 (367)
T cd08205 115 RFGIEGLRRLLGVHDRPLLGT-IIKPSIGLSPEELAELAYELALGGIDLIKDDELL-------ADQPYAPFEERVRACME 186 (367)
T ss_pred CCCchhHHHHhCCCCCCeeee-eeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccc-------cCcccCCHHHHHHHHHH
Confidence 456666776543 45676443 333 23455555 4599999532222 23346789998888776
Q ss_pred HHcccC-----CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHH-HcCCceeeeccCCcc
Q 016682 147 VARGAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIV-EAGIAVMGHVGLTPQ 220 (384)
Q Consensus 147 V~Rga~-----~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv-~aGIPV~gHiGLtPQ 220 (384)
+++.+. .++++++.- .+.++.++++.... +.||++|.+--- -.-...++.+. +.++|+++|--.
T Consensus 187 av~~a~~~TG~~~~y~~nit-----~~~~e~i~~a~~a~-~~Gad~vmv~~~-~~g~~~~~~l~~~~~lpi~~H~a~--- 256 (367)
T cd08205 187 AVRRANEETGRKTLYAPNIT-----GDPDELRRRADRAV-EAGANALLINPN-LVGLDALRALAEDPDLPIMAHPAF--- 256 (367)
T ss_pred HHHHHHHhhCCcceEEEEcC-----CCHHHHHHHHHHHH-HcCCCEEEEecc-cccccHHHHHHhcCCCeEEEccCc---
Confidence 665554 466667653 24589999997765 799999999643 11223344444 458999999321
Q ss_pred cccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhh
Q 016682 221 AISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSA 272 (384)
Q Consensus 221 ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~ 272 (384)
.|-|. ++.+.....+--+|-..-+|+|.+..... +.+...++.+.
T Consensus 257 ----~ga~~---~~~~~g~~~~~~~kl~RlaGad~~~~~~~~gk~~~~~~~~~~la~~ 307 (367)
T cd08205 257 ----AGALS---RSPDYGSHFLLLGKLMRLAGADAVIFPGPGGRFPFSREECLAIARA 307 (367)
T ss_pred ----ccccc---cCCCCcCCHHHHHHHHHHcCCCccccCCCccCcCCCHHHHHHHHHH
Confidence 12221 11111122244566777899999976543 35555666664
No 241
>PRK10200 putative racemase; Provisional
Probab=93.23 E-value=0.17 Score=48.24 Aligned_cols=51 Identities=29% Similarity=0.317 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEEc
Q 016682 231 QGKNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 231 qGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGIG 281 (384)
.+..++....+++.++.|+++||+.|++.|-. ......+.+++++|+++|-
T Consensus 54 ~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii 105 (230)
T PRK10200 54 RGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIA 105 (230)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehH
Confidence 34455677899999999999999999999986 6667889999999999974
No 242
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.19 E-value=1.6 Score=43.97 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe-cc----------hhhhhhc-cCCCCcCCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD----------SAAMVVH-GHDTTLPITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV-GD----------Sl~mv~l-G~~dT~~VtldeMl~h~ 144 (384)
+.+|..++.+..+.= ...|+.+.++|||.|=+ |. ...+..- .|--...=-+...++.+
T Consensus 125 ~~mt~~eI~~i~~~f----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 194 (353)
T cd02930 125 RELSEEEIEQTIEDF----------ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIV 194 (353)
T ss_pred CCCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHH
Confidence 468888888776431 23778889999999943 31 1111000 00001111255667888
Q ss_pred HHHHcccCCCcEE------EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 016682 145 RAVARGAKRPLLV------GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 145 raV~Rga~~~~vv------aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg 192 (384)
++|++.++..|.+ .|.--+++ +.+++++.+.+| ++.|+|.|.+-.
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~--~~~e~~~i~~~L-e~~G~d~i~vs~ 245 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGS--TWEEVVALAKAL-EAAGADILNTGI 245 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCC--CHHHHHHHHHHH-HHcCCCEEEeCC
Confidence 8998888766555 35433444 788998888776 478999999954
No 243
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.19 E-value=0.82 Score=48.53 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHHHhhhC-CCcEEEE-ecCChHHHHHHHHcCCCEEEecchhhh--hhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 83 HLRQKHKN-GEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAM--VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 83 ~lr~~k~~-g~~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~m--v~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
.+++.|++ .+..+|- ++=++.-|+-+.++|+|+|-||=..|. ...++-. ..+..=..++.|...++..+.| |++
T Consensus 258 ~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~-~~~p~~~av~~~~~~~~~~~~~-via 335 (479)
T PRK07807 258 ALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTG-VGRPQFSAVLECAAAARELGAH-VWA 335 (479)
T ss_pred HHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccC-CchhHHHHHHHHHHHHHhcCCc-EEe
Confidence 34444433 2345666 999999999999999999987644433 2233322 1223444556666666666556 999
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
| |++ .++.++ .+.+ +.||++|.+-
T Consensus 336 ~---ggi-~~~~~~----~~al-~~ga~~v~~g 359 (479)
T PRK07807 336 D---GGV-RHPRDV----ALAL-AAGASNVMIG 359 (479)
T ss_pred c---CCC-CCHHHH----HHHH-HcCCCeeecc
Confidence 9 777 477777 4577 5899999993
No 244
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.19 E-value=4.2 Score=41.35 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=59.0
Q ss_pred CcEEEEec----CChHHHHHHHHcCC--CEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE-eCCCCC
Q 016682 92 EPITMVTA----YDYPSAVHLDSAGI--DICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGT 164 (384)
Q Consensus 92 ~~I~mlTA----yD~~sA~iae~AGi--D~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva-DmPfgs 164 (384)
..++-+.+ -|+..+..+-+||+ |+|.+=-+. |+.. ++.|+ .+.|++..|..+|++ |.-
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~-----gh~~----~~~e~---I~~ir~~~p~~~vi~g~V~--- 149 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH-----GHSD----SVINM---IQHIKKHLPETFVIAGNVG--- 149 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-----CchH----HHHHH---HHHHHhhCCCCeEEEEecC---
Confidence 34554443 55678888889965 999872111 2222 23344 566777777565665 753
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------------cchHHHHHHHHH-cCCceee
Q 016682 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGS---------------PSRITAARGIVE-AGIAVMG 213 (384)
Q Consensus 165 Y~~s~e~av~nA~rl~keaGAdaVKLEgg~---------------~e~~~~I~alv~-aGIPV~g 213 (384)
|.+++ .+++ ++|||+|++-.+. .+....|+.+++ ..+||++
T Consensus 150 ---t~e~a----~~l~-~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIA 206 (326)
T PRK05458 150 ---TPEAV----RELE-NAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA 206 (326)
T ss_pred ---CHHHH----HHHH-HcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEE
Confidence 55666 4566 6999999965321 124445666655 3677763
No 245
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=93.12 E-value=0.68 Score=46.70 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCcEEEec-C--------CCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhH---hhhhcCCCCCCCC
Q 016682 239 VKVVETALALQEVGCFSVVLE-C--------VPPPVAAAATSALQIPTIGIGAGPFCSGQVLVY---HDLLGMMQHPHHA 306 (384)
Q Consensus 239 ~~ll~rAkAleeAGAf~IvlE-~--------Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~---~DlLG~~~~P~~~ 306 (384)
++.++-++.++++|+|.|-+- + ...+.++.|.+.+++|+|+-|.=..-+..-++- -|++++.. | -
T Consensus 241 ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR-~--~ 317 (338)
T cd02933 241 ATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGR-P--F 317 (338)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCH-h--h
Confidence 466778889999999999872 2 236778899999999998765421111111221 36666652 1 1
Q ss_pred CCCcchhhhhhh
Q 016682 307 KVTPKFCKQFAR 318 (384)
Q Consensus 307 ~~~PkFvk~y~~ 318 (384)
-.-|.|+++..+
T Consensus 318 ladP~~~~k~~~ 329 (338)
T cd02933 318 IANPDLVERLKN 329 (338)
T ss_pred hhCcCHHHHHhc
Confidence 123666666543
No 246
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.07 E-value=4.2 Score=40.10 Aligned_cols=154 Identities=21% Similarity=0.270 Sum_probs=94.7
Q ss_pred HHHHHHHcCCCEEEe---cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLV---GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 104 sA~iae~AGiD~IlV---GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
-|+.++++|+|.|++ ||.. =+++-.+.|..-|...++.|.|-+..| |-.++=. .++..++ -+-
T Consensus 39 dA~~leegG~DavivEN~gD~P-----f~k~v~~~tvaaMa~iv~~v~r~v~iP-vGvNVLr----Nd~vaA~----~IA 104 (263)
T COG0434 39 DAAALEEGGVDAVIVENYGDAP-----FLKDVGPETVAAMAVIVREVVREVSIP-VGVNVLR----NDAVAAL----AIA 104 (263)
T ss_pred HHHHHHhCCCcEEEEeccCCCC-----CCCCCChHHHHHHHHHHHHHHHhcccc-ceeeeec----cccHHHH----HHH
Confidence 477789999999986 4443 123667888899999999999998877 4444422 2333333 333
Q ss_pred HHhCCCEEEe--------------CCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 181 KEGGMDAIKL--------------EGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 181 keaGAdaVKL--------------Egg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
..+||+-|.+ ||...|.. +.++....+|.|..-+ .+.+ +.-+.-++- .+++++
T Consensus 105 ~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~-r~r~~L~~~v~vlADv--~VKH-----a~~l~~~~~---~~~v~d-- 171 (263)
T COG0434 105 YAVGADFIRVNVLTGAYATDQGIIEGNAAELA-RYRARLGSRVKVLADV--HVKH-----AVHLGNRSL---EEAVKD-- 171 (263)
T ss_pred HhcCCCEEEEEeeeceEecccceecchHHHHH-HHHHhccCCcEEEeec--chhc-----ccccCCcCH---HHHHHH--
Confidence 4688988873 44312222 2333334777777541 1111 111122232 222222
Q ss_pred HHHHcCCcEEEecCC------CHHHHHHHHhhcCCCEEEEcCCCC
Q 016682 247 ALQEVGCFSVVLECV------PPPVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 247 AleeAGAf~IvlE~V------p~ela~~It~~l~IPtIGIGAG~~ 285 (384)
.+|..+||+|.+-+- ..+..+.+.+.++.|++ +|+|-.
T Consensus 172 tver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~~pvl-vGSGv~ 215 (263)
T COG0434 172 TVERGLADAVIVTGSRTGSPPDLEELKLAKEAVDTPVL-VGSGVN 215 (263)
T ss_pred HHHccCCCEEEEecccCCCCCCHHHHHHHHhccCCCEE-EecCCC
Confidence 367788999999864 26778999999999998 666644
No 247
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=93.07 E-value=4.4 Score=37.98 Aligned_cols=165 Identities=19% Similarity=0.254 Sum_probs=99.4
Q ss_pred HHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCC--CCCCcCCHHHHHHHHHHHHHHh
Q 016682 108 LDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLP--FGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 108 ae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmP--fgsY~~s~e~av~nA~rl~kea 183 (384)
++..|+|+| +==|.+.. .+.+......+.+++..+.|+|+ .-.. =|.|..+.++-++--.+++ +.
T Consensus 19 ~~~~~~D~vElRlD~l~~----------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~-~~ 87 (224)
T PF01487_consen 19 AESSGADAVELRLDYLEN----------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAI-RL 87 (224)
T ss_dssp HHHTTTSEEEEEGGGSTT----------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHH-HH
T ss_pred HHhcCCCEEEEEeccccc----------cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHH-Hc
Confidence 344499999 54455532 56777778888888888777555 2221 1456556665555555556 57
Q ss_pred CCCEEEeCCC-ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 016682 184 GMDAIKLEGG-SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (384)
Q Consensus 184 GAdaVKLEgg-~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp 262 (384)
|++.|-||-. ..+...........+.+|++. .|. ..+|.. .+++.+....+++.|||++=+=+.+
T Consensus 88 ~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S-------~H~------f~~tp~-~~~l~~~~~~~~~~gadivKia~~~ 153 (224)
T PF01487_consen 88 GPDYIDIELDLFPDDLKSRLAARKGGTKIILS-------YHD------FEKTPS-WEELIELLEEMQELGADIVKIAVMA 153 (224)
T ss_dssp TSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEE-------EEE------SS---T-HHHHHHHHHHHHHTT-SEEEEEEE-
T ss_pred CCCEEEEEcccchhHHHHHHHHhhCCCeEEEE-------ecc------CCCCCC-HHHHHHHHHHHHhcCCCeEEEEecc
Confidence 8999999975 234444466677889999875 121 122321 2336666667779999987554332
Q ss_pred ---HHH------HHHHHhhcCCCEEEEcCCCCCCchh-hhHhhhhcC
Q 016682 263 ---PPV------AAAATSALQIPTIGIGAGPFCSGQV-LVYHDLLGM 299 (384)
Q Consensus 263 ---~el------a~~It~~l~IPtIGIGAG~~cDGQv-LV~~DlLG~ 299 (384)
.++ ...+.+..++|+|+|+-|+. |++ -+...++|-
T Consensus 154 ~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~--G~~SRi~~~~~Gs 198 (224)
T PF01487_consen 154 NSPEDVLRLLRFTKEFREEPDIPVIAISMGEL--GRISRILNPIFGS 198 (224)
T ss_dssp SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGG--GHHHHHCHHHHTB
T ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEcCCC--chhHHHHHhhhcC
Confidence 222 22333334699999999986 653 467777774
No 248
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.06 E-value=1.3 Score=46.39 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHH
Q 016682 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 99 AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~r 178 (384)
..|...+..+-++|+|+|.+-.+ +|+.. .++...+.|++--+..+|++ |+- .+++++ ..
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a-----~g~~~-------~~~~~i~~i~~~~~~~~vi~----G~v-~t~~~a----~~ 281 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSS-----HGHSI-------YVIDSIKEIKKTYPDLDIIA----GNV-ATAEQA----KA 281 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECC-----CCcHh-------HHHHHHHHHHHhCCCCCEEE----EeC-CCHHHH----HH
Confidence 36678888889999999987322 34332 24444556655544444555 344 577777 34
Q ss_pred HHHHhCCCEEEeC
Q 016682 179 ILKEGGMDAIKLE 191 (384)
Q Consensus 179 l~keaGAdaVKLE 191 (384)
++ ++|||+|++-
T Consensus 282 l~-~aGad~i~vg 293 (450)
T TIGR01302 282 LI-DAGADGLRVG 293 (450)
T ss_pred HH-HhCCCEEEEC
Confidence 66 6999999974
No 249
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=93.06 E-value=3.8 Score=40.01 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHhhhCCCcEEE--EecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 84 LRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 84 lr~~k~~g~~I~m--lTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
|+++.++|+++.. ++..+...+.++..+|+|.+.+= ---++.+++++..+++++. ....+ .++=+|
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD----------~EHg~~~~~~~~~~i~a~~-~~g~~-~lVRvp 77 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLD----------GEHAPNDVSTFIPQLMALK-GSASA-PVVRVP 77 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEc----------cccCCCCHHHHHHHHHHHh-hcCCC-cEEECC
Confidence 7788888888643 46788899999999999999873 1123678888888888774 34444 455566
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCc
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTP 219 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtP 219 (384)
.. ++... .|.+ +.||++|-+-- -+.++.++.+++ ..-|-.|.=|+.|
T Consensus 78 ~~----~~~~i----~r~L-D~Ga~giivP~--v~tae~a~~~v~a~kypP~G~Rg~~~ 125 (256)
T PRK10558 78 TN----EPVII----KRLL-DIGFYNFLIPF--VETAEEARRAVASTRYPPEGIRGVSV 125 (256)
T ss_pred CC----CHHHH----HHHh-CCCCCeeeecC--cCCHHHHHHHHHHcCCCCCCcCCCCc
Confidence 53 33333 4778 79999998854 345666777765 4666666666655
No 250
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.05 E-value=0.81 Score=44.82 Aligned_cols=109 Identities=23% Similarity=0.210 Sum_probs=69.3
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
|+..-+.+.++| -.|++ +.-|...|+-++++|+.++.---|....-+|..+ -+..+.|+...+.| ||+
T Consensus 112 tl~Aae~Lv~eG-F~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n---------~~~l~~i~~~~~vP-vIv 180 (247)
T PF05690_consen 112 TLKAAEILVKEG-FVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQN---------PYNLRIIIERADVP-VIV 180 (247)
T ss_dssp HHHHHHHHHHTT--EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SST---------HHHHHHHHHHGSSS-BEE
T ss_pred HHHHHHHHHHCC-CEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCC---------HHHHHHHHHhcCCc-EEE
Confidence 445555566666 55555 7778999999999999999865566666677766 34556666666777 777
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------ccchHHHHHHHHHcC
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG------SPSRITAARGIVEAG 208 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg------~~e~~~~I~alv~aG 208 (384)
|=.- .+|.++ ...| |.|+|+|-+--. ...|+...+..+++|
T Consensus 181 DAGi----G~pSda----a~AM-ElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 181 DAGI----GTPSDA----AQAM-ELGADAVLVNTAIAKAKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp ES-------SHHHH----HHHH-HTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred eCCC----CCHHHH----HHHH-HcCCceeehhhHHhccCCHHHHHHHHHHHHHHH
Confidence 8654 356677 4578 799999988522 145777777777766
No 251
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.05 E-value=1.5 Score=44.31 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCCEEEeCCC---------c------------------cchHHHHHHHHHc-CCceeeeccCCccccc
Q 016682 172 AVDTAVRILKEGGMDAIKLEGG---------S------------------PSRITAARGIVEA-GIAVMGHVGLTPQAIS 223 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg---------~------------------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~ 223 (384)
-.+.|.+ .+++|.|+|-|-++ + .-..+.|++++++ +.||.-- +.+.
T Consensus 144 f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vR--is~~--- 217 (337)
T PRK13523 144 FKQAAVR-AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVR--ISAS--- 217 (337)
T ss_pred HHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEE--eccc---
Confidence 3344444 45799999999866 1 1122445555543 5566533 2221
Q ss_pred ccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC----------CC---HHHHHHHHhhcCCCEEEEcCCCCCCch-
Q 016682 224 VLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------VP---PPVAAAATSALQIPTIGIGAGPFCSGQ- 289 (384)
Q Consensus 224 ~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~----------Vp---~ela~~It~~l~IPtIGIGAG~~cDGQ- 289 (384)
+|.--|-+. ++.++-++.++++|+|.|-+-+ .+ .+.++.|.+.+++||++.|. -.|.+
T Consensus 218 ---d~~~~G~~~---~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~--i~~~~~ 289 (337)
T PRK13523 218 ---DYHPGGLTV---QDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL--ITSGAQ 289 (337)
T ss_pred ---ccCCCCCCH---HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC--CCCHHH
Confidence 121224453 5567778888999999997632 11 47889999999999887643 33332
Q ss_pred --hhhH---hhhhcCC
Q 016682 290 --VLVY---HDLLGMM 300 (384)
Q Consensus 290 --vLV~---~DlLG~~ 300 (384)
-++. -|++++.
T Consensus 290 a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 290 AEEILQNNRADLIFIG 305 (337)
T ss_pred HHHHHHcCCCChHHhh
Confidence 2221 4777765
No 252
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.04 E-value=0.22 Score=48.41 Aligned_cols=131 Identities=22% Similarity=0.224 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC-CCCCcCCHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP-FGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP-fgsY~~s~e~av~nA~rl~k 181 (384)
-.|+.++++|+|.+++.- |-....|-++++.|.+.|+..++.|+++=|.| ..++..+++.. .++.+
T Consensus 87 ~~a~~a~~~Gad~v~v~~---------P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l----~~L~~ 153 (289)
T PF00701_consen 87 ELARHAQDAGADAVLVIP---------PYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETL----ARLAK 153 (289)
T ss_dssp HHHHHHHHTT-SEEEEEE---------STSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHH----HHHHT
T ss_pred HHHHHHhhcCceEEEEec---------cccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHH----HHHhc
Confidence 347788899999998752 33346789999999999999999999999999 44665677655 45665
Q ss_pred HhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccc-cCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 182 EGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRP-QGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 182 eaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrv-qGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
--.+.++|...+ . . ..+..+... + .+|.+ .| .+. . ......+|+++.+--
T Consensus 154 ~~nv~giK~s~~-~-~-~~~~~~~~~~~-----------------~~~~v~~G-~d~----~---~~~~l~~G~~G~is~ 205 (289)
T PF00701_consen 154 IPNVVGIKDSSG-D-L-ERLIQLLRAVG-----------------PDFSVFCG-DDE----L---LLPALAAGADGFISG 205 (289)
T ss_dssp STTEEEEEESSS-B-H-HHHHHHHHHSS-----------------TTSEEEES-SGG----G---HHHHHHTTSSEEEES
T ss_pred CCcEEEEEcCch-h-H-HHHHHHhhhcc-----------------cCeeeecc-ccc----c---ccccccccCCEEEEc
Confidence 456899998776 2 2 223333322 1 11221 23 221 1 123345899999866
Q ss_pred CC--CHHHHHHHHhhcC
Q 016682 260 CV--PPPVAAAATSALQ 274 (384)
Q Consensus 260 ~V--p~ela~~It~~l~ 274 (384)
.. =++...+|.+.+.
T Consensus 206 ~~n~~P~~~~~i~~~~~ 222 (289)
T PF00701_consen 206 LANVFPELIVEIYDAFQ 222 (289)
T ss_dssp GGGTHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHH
Confidence 43 3677777777643
No 253
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.03 E-value=3.2 Score=41.46 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe--cc---------hhhhhh-ccCCCCcCCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD---------SAAMVV-HGHDTTLPITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV--GD---------Sl~mv~-lG~~dT~~VtldeMl~h~ 144 (384)
+.+|..++.+..+.= ...|+.+.++|||.|=+ |- ...+.. -.|-....=-+..+++.+
T Consensus 142 ~~mt~~eI~~ii~~~----------~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv 211 (336)
T cd02932 142 RELTREEIAEVVDAF----------VAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVV 211 (336)
T ss_pred CcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHH
Confidence 568888888776430 24678889999999943 21 111110 011112223355667888
Q ss_pred HHHHcccCCC-cEEEeCCC-----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC-----------ccchHHHHHHHHH-
Q 016682 145 RAVARGAKRP-LLVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEGG-----------SPSRITAARGIVE- 206 (384)
Q Consensus 145 raV~Rga~~~-~vvaDmPf-----gsY~~s~e~av~nA~rl~keaGAdaVKLEgg-----------~~e~~~~I~alv~- 206 (384)
++|++.++.- .|..+|.. +++ +.+++++-+.++- +.|+|.|.+-.| ..+..+.++.+.+
T Consensus 212 ~aIR~~vG~d~~v~vri~~~~~~~~g~--~~~e~~~ia~~Le-~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~ 288 (336)
T cd02932 212 DAVRAVWPEDKPLFVRISATDWVEGGW--DLEDSVELAKALK-ELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE 288 (336)
T ss_pred HHHHHHcCCCceEEEEEcccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh
Confidence 8888888432 36677652 233 6888888776654 689999987532 1223455555654
Q ss_pred cCCceee
Q 016682 207 AGIAVMG 213 (384)
Q Consensus 207 aGIPV~g 213 (384)
..|||++
T Consensus 289 ~~iPVi~ 295 (336)
T cd02932 289 AGIPVIA 295 (336)
T ss_pred CCCCEEE
Confidence 4799985
No 254
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.03 E-value=4.8 Score=40.77 Aligned_cols=107 Identities=12% Similarity=0.025 Sum_probs=68.9
Q ss_pred CcEEEEec---CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCC
Q 016682 92 EPITMVTA---YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (384)
Q Consensus 92 ~~I~mlTA---yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s 168 (384)
.+++++.. ++.-.-+.+.++|+|.|-+.++..- .+....|++.++. .. ..+.+.+.. ++..+
T Consensus 77 ~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~d~~~~~i~~ak~-~G-~~v~~~l~~-s~~~~ 141 (333)
T TIGR03217 77 AKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTE------------ADVSEQHIGMARE-LG-MDTVGFLMM-SHMTP 141 (333)
T ss_pred CEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccch------------HHHHHHHHHHHHH-cC-CeEEEEEEc-ccCCC
Confidence 45554432 4666778888999999977654311 1344566665543 22 224444443 45568
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C--Cceeee
Q 016682 169 TNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G--IAVMGH 214 (384)
Q Consensus 169 ~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G--IPV~gH 214 (384)
++..++.+.++. +.|++.|.|-|.. .+..+.++++.+. + ||+--|
T Consensus 142 ~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 142 PEKLAEQAKLME-SYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 888887776654 7999999999853 5667778888764 3 777666
No 255
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.02 E-value=6.7 Score=37.41 Aligned_cols=139 Identities=21% Similarity=0.227 Sum_probs=80.6
Q ss_pred HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC-CcEEEe---------CCCCCCcCCHHHHHHH
Q 016682 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR-PLLVGD---------LPFGTYESSTNQAVDT 175 (384)
Q Consensus 106 ~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~-~~vvaD---------mPfgsY~~s~e~av~n 175 (384)
..+.++|+|++.|=-.. =.+|+..+..+.+.... -++.+| +-...|..+.++.+.+
T Consensus 74 ~~~~~~gad~itvH~~a--------------g~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~ 139 (230)
T PRK00230 74 RALAKLGVDMVNVHASG--------------GPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLR 139 (230)
T ss_pred HHHHHcCCCEEEEcccC--------------CHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHH
Confidence 34578999999752111 14556555554432111 133344 2123455566788888
Q ss_pred HHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 176 AVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
..|..++.|+++|++-.. -...||.+...+.- ...+|.+.+|-..++ ++.+......-++||+.
T Consensus 140 ~a~~a~~~g~dgvv~~~~---~~~~ir~~~~~~~~------------~v~pGI~~~g~~~~d-q~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 140 LAKLAQEAGLDGVVCSAQ---EAAAIREATGPDFL------------LVTPGIRPAGSDAGD-QKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHcCCeEEEeChH---HHHHHHhhcCCceE------------EEcCCcCCCCCCcch-HHHHhCHHHHHHcCCCE
Confidence 889888999999999653 24566666533321 123444444422222 33444555555899999
Q ss_pred EEec-----CC-CHHHHHHHHhhcC
Q 016682 256 VVLE-----CV-PPPVAAAATSALQ 274 (384)
Q Consensus 256 IvlE-----~V-p~ela~~It~~l~ 274 (384)
+++= .- |.+.++.|.+.+.
T Consensus 204 iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCCCCHHHHHHHHHHHhh
Confidence 9863 33 5788888887654
No 256
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=93.00 E-value=0.34 Score=48.15 Aligned_cols=107 Identities=23% Similarity=0.256 Sum_probs=67.9
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHH-cCCceeeec
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVE-AGIAVMGHV 215 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~-aGIPV~gHi 215 (384)
.+++=+- + .+++...+.|.. +.+.|+++|.|-=|- +...+.|+++++ .++||..=|
T Consensus 55 p~~~Ql~--g--~~~~~~~~aa~~-~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKi 129 (309)
T PF01207_consen 55 PLIVQLF--G--NDPEDLAEAAEI-VAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKI 129 (309)
T ss_dssp TEEEEEE-----S-HHHHHHHHHH-HCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEE
T ss_pred ceeEEEe--e--ccHHHHHHHHHh-hhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEec
Confidence 3666552 2 368877776655 446799999998551 455677777775 477875321
Q ss_pred cCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC----------CCHHHHHHHHhhcCCCEEEEc
Q 016682 216 GLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC----------VPPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 216 GLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~----------Vp~ela~~It~~l~IPtIGIG 281 (384)
++ |- ++.-++.++-++.++++|++.|.+-+ ..-+.+++|.+.++||+|+=|
T Consensus 130 --------R~------g~-~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 130 --------RL------GW-DDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp --------ES------EC-T--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred --------cc------cc-ccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 11 11 13446788999999999999999887 335788999999999998755
No 257
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=92.97 E-value=6 Score=42.01 Aligned_cols=295 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred ceeccCchhhhhhhhHHH---hhhHHHHHHHhhhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 016682 10 RVQVAQPKHLFKQTQLLV---TLTQHYSRILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQ 86 (384)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~~~~~t~~~lr~ 86 (384)
++.++-|-.+|...|+.. .+.-..+-|...+.++- ---.++++..+.+. || +.-+.-+|+
T Consensus 76 ~v~IayP~~~fe~~~l~~llt~i~GN~~~~~~~~~irL-~Dl~lP~~~~~~F~---------GP-------~fGi~G~R~ 138 (450)
T cd08212 76 FAYIAYPLDLFEEGSVANLTTSIVGNVFGFKALRALRL-EDLRIPPAYVKTFQ---------GP-------PHGIQVERD 138 (450)
T ss_pred EEEEEcchhhcCcccHHHHHHHHhccccccccccceEE-EEeeCCHHHHhcCC---------CC-------CCCcHHHHH
Q ss_pred hh-hCCCcEEEEecCC---------hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC----
Q 016682 87 KH-KNGEPITMVTAYD---------YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---- 152 (384)
Q Consensus 87 ~k-~~g~~I~mlTAyD---------~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~---- 152 (384)
+. ..++||++-..-= +--+.-+-..|+|+|==- .+..|...-.++|-+..|..+.+.+.
T Consensus 139 ~lgv~~RPL~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IKDD-------E~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG 211 (450)
T cd08212 139 RLNKYGRPLLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTKDD-------ENINSQPFMRWRDRFLFVAEAVNKAQAETG 211 (450)
T ss_pred HhCCCCCceEEEeccCccCCCHHHHHHHHHHHHccCCcccccC-------ccCCCCCCCCHHHHHHHHHHHHHHHHHhhC
Q ss_pred -CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH----cCCceeeeccCCcccccccCC
Q 016682 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE----AGIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 153 -~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~----aGIPV~gHiGLtPQ~~~~lgG 227 (384)
..+..+++-- .+.++-++++.+.. +.|+.+|.+--- . =...++.|++ .++|+++| ....|
T Consensus 212 ~~~~y~~NiTa----~~~~em~~ra~~a~-~~G~~~~mv~~~-~-G~~~l~~l~~~a~~~~l~IhaH--------rA~~g 276 (450)
T cd08212 212 EVKGHYLNVTA----GTMEEMYKRAEFAK-ELGSPIIMHDLL-T-GFTAIQSLAKWCRDNGMLLHLH--------RAGHA 276 (450)
T ss_pred CcceeeccccC----CCHHHHHHHHHHHH-HhCCCeEeeecc-c-ccchHHHHHHHhhhcCceEEec--------cccce
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhhcCCCEE---------------EE-cCCCC
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSALQIPTI---------------GI-GAGPF 285 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~l~IPtI---------------GI-GAG~~ 285 (384)
-......---...++ +|.+.=+|||.+....+ +.+....+.+.+.-|.+ +| .+=|-
T Consensus 277 a~~r~~~~Gis~~vl--~kl~RLaGaD~ih~~t~~Gk~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~q~~~~~k~~~Pv 354 (450)
T cd08212 277 TYDRQKNHGIHFRVL--AKWLRLSGVDHIHAGTVVGKLEGDPLVTLGFYDLLRDDYIEKDRSRGIFFTQDWASLPGVMPV 354 (450)
T ss_pred ecccCccCCcCHHHH--HHHHHHcCCCccccCCCcCCcCCCHHHHHHHHHHHhhhhcccccccccccccccccCCCceEe
Q ss_pred CCchhhhHhhhhcCCCCCCCCCCCcchhhhhhh-------------------hHHHHHHHHHHHHH-------HhccCCC
Q 016682 286 CSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFAR-------------------VGDVINKALLEYKE-------EVTNGSF 339 (384)
Q Consensus 286 cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~-------------------~~~~~~~A~~~y~~-------eV~~g~F 339 (384)
.+| |++ ....|.+.+.|.+ ....+++|+.++.+ -.|+|.-
T Consensus 355 ~sG---------G~~-----~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~~~~~G~~~~~~~~~ 420 (450)
T cd08212 355 ASG---------GIH-----VGQMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEAMVQARNEGRDLAREGPE 420 (450)
T ss_pred cCC---------CCC-----HHHHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHHHHHhhcccchhhhcCch
Q ss_pred CCCCCCCccCChhhHHHHHHHHHhcC
Q 016682 340 PGPSHSPYKMSSSDCNGFFNELQKLG 365 (384)
Q Consensus 340 P~~~h~~y~~~~~e~~~f~~~~~~~~ 365 (384)
|-.+.. .+..++...|+.||
T Consensus 421 ~l~e~a------~~~~eL~~Al~~wg 440 (450)
T cd08212 421 ILREAA------KWSPELAAALETWK 440 (450)
T ss_pred hHHHHh------hcCHHHHHHHHHhc
No 258
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.91 E-value=4.1 Score=37.00 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=78.0
Q ss_pred CHHHHHHhhhCCCcEEE-EecCCh--HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 80 TLTHLRQKHKNGEPITM-VTAYDY--PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~m-lTAyD~--~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v 156 (384)
.++.+++.. .+-+|.. ++..|. ..++.+-++|+|.|.+=+.. . +-++++++..++. .+. .+
T Consensus 43 ~i~~i~~~~-~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~--------~--~~~~~~~i~~~~~--~g~---~~ 106 (202)
T cd04726 43 AVRALREAF-PDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA--------P--LSTIKKAVKAAKK--YGK---EV 106 (202)
T ss_pred HHHHHHHHC-CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC--------C--HHHHHHHHHHHHH--cCC---eE
Confidence 344454432 2334443 355566 36788889999999863221 1 1234555554442 232 26
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC----C---ccchHHHHHHHHH-cCCceeeeccCCcccccccCCc
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG----G---SPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGF 228 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg----g---~~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGf 228 (384)
+.+++ +. .++++.. +.+ ..|+|.|++.= + .....+.++.+.+ ..+|++ ..||.
T Consensus 107 ~v~~~--~~-~t~~e~~----~~~-~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-----------~~GGI 167 (202)
T cd04726 107 QVDLI--GV-EDPEKRA----KLL-KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVA-----------VAGGI 167 (202)
T ss_pred EEEEe--CC-CCHHHHH----HHH-HCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEE-----------EECCc
Confidence 66755 34 3777774 344 46999999841 1 1345678888876 567776 34443
Q ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 229 rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
+. +.++.+.++||+++++=
T Consensus 168 -----~~-------~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 168 -----TP-------DTLPEFKKAGADIVIVG 186 (202)
T ss_pred -----CH-------HHHHHHHhcCCCEEEEe
Confidence 22 24667789999998875
No 259
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.91 E-value=3.9 Score=40.01 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=88.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
-+..|++.+++-...++.++||..++..+++. +|++-+|... ++--+++. ++. .+..| |+.=
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~------------~~n~~LL~---~~a-~~gkP-Vilk 138 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARN------------MQNFELLK---EVG-KQGKP-VLLK 138 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECccc------------ccCHHHHH---HHh-cCCCc-EEEe
Confidence 45557776666667789999999999999999 9999998543 22233444 343 35667 4444
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeCCCcc---------chHHHHHHHHH-cCCceeeeccCCcccccccCCc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGGSP---------SRITAARGIVE-AGIAVMGHVGLTPQAISVLGGF 228 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGA-daVKLEgg~~---------e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGf 228 (384)
.+. . .++++... |+..+++.|. +.+-+|-|.. --...|..+.+ .+.||+ +.|.+. +
T Consensus 139 ~G~--~-~t~~e~~~-Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~----~ds~Hs---~-- 205 (260)
T TIGR01361 139 RGM--G-NTIEEWLY-AAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPII----VDPSHA---A-- 205 (260)
T ss_pred CCC--C-CCHHHHHH-HHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEE----EcCCCC---C--
Confidence 432 1 35566544 4445556787 5666785421 12345556655 388886 333221 2
Q ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEecC
Q 016682 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLEC 260 (384)
Q Consensus 229 rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~ 260 (384)
|+. +-+..-+++-..+||++|++|.
T Consensus 206 ---G~r----~~~~~~~~aAva~Ga~gl~iE~ 230 (260)
T TIGR01361 206 ---GRR----DLVIPLAKAAIAAGADGLMIEV 230 (260)
T ss_pred ---Ccc----chHHHHHHHHHHcCCCEEEEEe
Confidence 321 1223446667789999999993
No 260
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=92.89 E-value=4.3 Score=40.04 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=93.7
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.|+..+++|+|.|++-.-..+=. ..+..+.|..-|-.-++.|++..+.| +-+++=. .++..++. +-+.+
T Consensus 33 ea~~l~~~GvD~viveN~~d~P~--~~~~~p~tva~m~~i~~~v~~~~~~p-~GvnvL~----nd~~aal~----iA~a~ 101 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFDAPF--LKEVDPETVAAMAVIAGQLKSDVSIP-LGINVLR----NDAVAALA----IAMAV 101 (257)
T ss_pred HHHHHHhCCCCEEEEecCCCCCC--cCCCCHHHHHHHHHHHHHHHHhcCCC-eeeeeec----CCCHHHHH----HHHHh
Confidence 58899999999999853222111 11466778888888889999998777 5566543 24445544 44568
Q ss_pred CCCEEEeCCCc-----------cchHHHHHHHHH--cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------PSRITAARGIVE--AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (384)
Q Consensus 184 GAdaVKLEgg~-----------~e~~~~I~alv~--aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAlee 250 (384)
||+-|.++.-. ....+.+|.-.+ ..|.+++- +.+.+...+ -.++ +-+.++..+.
T Consensus 102 ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~ad--V~~kh~~~l-----~~~~------~~e~a~~~~~ 168 (257)
T TIGR00259 102 GAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILAD--IVVKHAVHL-----GNRD------LESIALDTVE 168 (257)
T ss_pred CCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEec--eeecccCcC-----CCCC------HHHHHHHHHH
Confidence 99999986310 112233222222 55666653 333222211 1233 3345555555
Q ss_pred cC-CcEEEecCC------CHHHHHHHHhhc-CCCEEEEcCCCC
Q 016682 251 VG-CFSVVLECV------PPPVAAAATSAL-QIPTIGIGAGPF 285 (384)
Q Consensus 251 AG-Af~IvlE~V------p~ela~~It~~l-~IPtIGIGAG~~ 285 (384)
-| ||+|.+-+. +.+.++.+.+++ ++|++ +|+|-.
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvl-lggGvt 210 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVL-AGSGVN 210 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEE-EECCCC
Confidence 55 999999874 367778887655 58964 776643
No 261
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.84 E-value=0.93 Score=48.24 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=64.2
Q ss_pred HHHHHHhhhC--CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 81 LTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 81 ~~~lr~~k~~--g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
++.++++++. +-+|..=|+-+...|+.+.+||+|.|-||=+.|.......- ...++.-..+..++.+++..+.| |+
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~-vI 348 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVP-CI 348 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCe-EE
Confidence 4456666554 23444448999999999999999999876433322211100 01122234455666666666555 88
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
+| |++ .++.+++ +.+ +.||++|.+-
T Consensus 349 ad---GGi-~~~~di~----kAl-a~GA~~Vm~G 373 (495)
T PTZ00314 349 AD---GGI-KNSGDIC----KAL-ALGADCVMLG 373 (495)
T ss_pred ec---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 88 788 5788873 567 5899999993
No 262
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.83 E-value=3.6 Score=41.58 Aligned_cols=163 Identities=12% Similarity=0.029 Sum_probs=90.7
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe--c--chhhhhhccCC----C--C--cCCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G--DSAAMVVHGHD----T--T--LPITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV--G--DSl~mv~lG~~----d--T--~~VtldeMl~h~ 144 (384)
+.+|..++.+..+. | .-.|+.+.+||||.|-+ | .-+....--+- | + ..=-+.-+++.+
T Consensus 140 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii 209 (338)
T cd02933 140 RALTTEEIPGIVAD---------F-RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVV 209 (338)
T ss_pred CCCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHH
Confidence 46888888876642 1 25788999999999943 2 11111110000 0 0 111234455667
Q ss_pred HHHHcccCCCcEEEeCCC------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc------chHHHHHHHHH-cCCce
Q 016682 145 RAVARGAKRPLLVGDLPF------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP------SRITAARGIVE-AGIAV 211 (384)
Q Consensus 145 raV~Rga~~~~vvaDmPf------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~------e~~~~I~alv~-aGIPV 211 (384)
++|++.++.-+|..=|.- +.++.+.++.++.+..+. +.|+|.|.+..|.. ...+.++.+.+ .+|||
T Consensus 210 ~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~-~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipv 288 (338)
T cd02933 210 DAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELN-KRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPL 288 (338)
T ss_pred HHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHH-HcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCE
Confidence 777776654135543321 123457888888776665 78999999965521 23344444443 37999
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhh
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSA 272 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~ 272 (384)
++ .|++. .+.++++| ++-+||+|-+= .+ .+++.+.+.+.
T Consensus 289 i~-----------~G~i~-----~~~a~~~l------~~g~~D~V~~gR~~ladP~~~~k~~~g 330 (338)
T cd02933 289 IA-----------AGGYD-----AESAEAAL------ADGKADLVAFGRPFIANPDLVERLKNG 330 (338)
T ss_pred EE-----------ECCCC-----HHHHHHHH------HcCCCCEEEeCHhhhhCcCHHHHHhcC
Confidence 85 35542 33444433 33458888764 22 35666666543
No 263
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.82 E-value=1.5 Score=44.35 Aligned_cols=125 Identities=9% Similarity=0.095 Sum_probs=70.1
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe-cc---hhhhhhcc----CCCCcCCCH----HHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GD---SAAMVVHG----HDTTLPITL----EEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV-GD---Sl~mv~lG----~~dT~~Vtl----deMl~h~ 144 (384)
+.+|..++.+..+. | .-.|+.+.+||||.|-+ +. -+....-- ..|.-.=++ .-+++..
T Consensus 132 ~~mt~~eI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii 201 (353)
T cd04735 132 RELTHEEIEDIIDA---------F-GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVV 201 (353)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHH
Confidence 46888888877642 1 25788899999999943 21 11110000 011101122 2345666
Q ss_pred HHHHcccC----CCcEE-EeCC-----CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------------cchHHHHH
Q 016682 145 RAVARGAK----RPLLV-GDLP-----FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------------PSRITAAR 202 (384)
Q Consensus 145 raV~Rga~----~~~vv-aDmP-----fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------------~e~~~~I~ 202 (384)
++|+..++ ..|.+ .-|. .++ .+.++.++.+.++ ++.|+|.|.+-++. .+..+.|+
T Consensus 202 ~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g--~~~ee~~~i~~~L-~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik 278 (353)
T cd04735 202 KAVQEVIDKHADKDFILGYRFSPEEPEEPG--IRMEDTLALVDKL-ADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVK 278 (353)
T ss_pred HHHHHHhccccCCCceEEEEECcccccCCC--CCHHHHHHHHHHH-HHcCCCEEEeccCccccccccCCcchHHHHHHHH
Confidence 77777765 34433 3222 233 3678888777665 47899999997642 11233344
Q ss_pred HHHHcCCceeee
Q 016682 203 GIVEAGIAVMGH 214 (384)
Q Consensus 203 alv~aGIPV~gH 214 (384)
..+..+|||++.
T Consensus 279 ~~~~~~iPVi~~ 290 (353)
T cd04735 279 ERIAGRLPLIAV 290 (353)
T ss_pred HHhCCCCCEEEE
Confidence 444447999875
No 264
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.81 E-value=1 Score=46.08 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 78 ~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v 156 (384)
.+|.+++..+++ -+.||++=..-+...|+.+.++|+|.|.|..+.|... |..+.+++-+....+++. +...|
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~l----d~~~~~~~~l~~i~~a~~---~~i~v 279 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQL----DGGPASFDSLPEIAEAVN---HRVPI 279 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccC----CCCchHHHHHHHHHHHhC---CCCeE
Confidence 467788777664 3568887777788899999999999999877766443 345556654433333321 12338
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
++| |+. .+..+++ +.+ ..||++|.+-
T Consensus 280 i~d---GGI-r~g~Di~----kaL-alGA~~V~iG 305 (351)
T cd04737 280 IFD---SGV-RRGEHVF----KAL-ASGADAVAVG 305 (351)
T ss_pred EEE---CCC-CCHHHHH----HHH-HcCCCEEEEC
Confidence 888 666 4677774 566 4899999993
No 265
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.76 E-value=1.4 Score=45.02 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred cCChHHHHHHHHcCCCEEEecchhhhhhccCCCCc---CCCHHHHHHHHHHHHcccCCCcEEE--eCCCCC-------Cc
Q 016682 99 AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTL---PITLEEMLVHCRAVARGAKRPLLVG--DLPFGT-------YE 166 (384)
Q Consensus 99 AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~---~VtldeMl~h~raV~Rga~~~~vva--DmPfgs-------Y~ 166 (384)
..+.+|..-+-+.|.|++-+- +.+| +|.. .-...+++..+..=|+....||++- =-|.+. |.
T Consensus 106 ~~~~~sve~a~~~GAdAVk~l-----v~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a 179 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLL-----LYYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFA 179 (340)
T ss_pred ccccccHHHHHHcCCCEEEEE-----EEeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccccccc
Confidence 345566777888999988542 3344 3322 2223333444445577778887772 122222 11
Q ss_pred CCHHHHHHHHHHHHH--HhCCCEEEeC
Q 016682 167 SSTNQAVDTAVRILK--EGGMDAIKLE 191 (384)
Q Consensus 167 ~s~e~av~nA~rl~k--eaGAdaVKLE 191 (384)
....+.+..|.|..- |.|||.+|+|
T Consensus 180 ~~~p~~V~~a~r~~~~~elGaDvlKve 206 (340)
T PRK12858 180 KVKPEKVIKTMEEFSKPRYGVDVLKVE 206 (340)
T ss_pred ccCHHHHHHHHHHHhhhccCCeEEEee
Confidence 122345666666665 5999999997
No 266
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.75 E-value=2.7 Score=43.25 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=53.5
Q ss_pred Cc-EEEEecC-C----hHHHHHHHHcCCCEEE--ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 92 EP-ITMVTAY-D----YPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 92 ~~-I~mlTAy-D----~~sA~iae~AGiD~Il--VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
.| |+-++.. | .-.|+.++++|+|+|= +|-......-|......-..+.+..-+++|++.++.| |.+=|.-
T Consensus 100 ~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P-v~vKl~p- 177 (420)
T PRK08318 100 RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP-VIVKLTP- 177 (420)
T ss_pred ceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc-EEEEcCC-
Confidence 44 4555555 4 3356788899999994 4432211112222223345567778888888877777 6666652
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEE
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIK 189 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVK 189 (384)
.+ .+..+. .+.++++|||+|-
T Consensus 178 ~~-~~~~~~----a~~~~~~Gadgi~ 198 (420)
T PRK08318 178 NI-TDIREP----ARAAKRGGADAVS 198 (420)
T ss_pred Cc-ccHHHH----HHHHHHCCCCEEE
Confidence 23 233222 3455589999998
No 267
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.75 E-value=1 Score=45.58 Aligned_cols=83 Identities=19% Similarity=0.304 Sum_probs=53.6
Q ss_pred CcEEEEe-cCChHHHHHHHHcCCCEEEecchhhhhh-------ccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC
Q 016682 92 EPITMVT-AYDYPSAVHLDSAGIDICLVGDSAAMVV-------HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 92 ~~I~mlT-AyD~~sA~iae~AGiD~IlVGDSl~mv~-------lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg 163 (384)
.|+++.. .-++..|+.+.++|+|.|.||-..|..+ .|+++- ++.....++...+.| |++| |
T Consensus 137 ~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~~p-VIad---G 205 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKP-IIAD---G 205 (321)
T ss_pred CCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcCCe-EEEE---C
Confidence 4645554 8899999999999999999884444432 233211 123334444444445 9999 6
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
+.. +..++ .+.+ ..||++|.+-
T Consensus 206 GIr-~~~Di----~KAL-a~GAd~Vmig 227 (321)
T TIGR01306 206 GIR-THGDI----AKSI-RFGASMVMIG 227 (321)
T ss_pred CcC-cHHHH----HHHH-HcCCCEEeec
Confidence 663 55555 3566 5899999983
No 268
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.74 E-value=1.4 Score=42.47 Aligned_cols=123 Identities=21% Similarity=0.192 Sum_probs=74.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH---HcccCCCcEEEeC-CCC---CCcCCHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV---ARGAKRPLLVGDL-PFG---TYESSTNQAVDTAV 177 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV---~Rga~~~~vvaDm-Pfg---sY~~s~e~av~nA~ 177 (384)
++-+-+.|+|.|-+-+..+. + +-.+++..+++| ++..+.||++ +. +.| ++ .+++ .+..+.
T Consensus 96 v~~al~~Ga~~v~~~~~~g~------~----~~~~~~~~~~~i~~~~~~~g~~liv-~~~~~Gvh~~~-~~~~-~~~~~~ 162 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVNVGS------D----TEWEQIRDLGMIAEICDDWGVPLLA-MMYPRGPHIDD-RDPE-LVAHAA 162 (258)
T ss_pred HHHHHHCCCCEEEEEEecCC------c----hHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCccccc-ccHH-HHHHHH
Confidence 45556889998876655431 1 223444444444 4445667666 22 111 22 2444 444444
Q ss_pred HHHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 178 RILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
+...+.|||-||+... .-.+.++.+++ .++||+. .||- +.+..+++++....+.++||+++
T Consensus 163 ~~a~~~GADyikt~~~--~~~~~l~~~~~~~~iPVva-----------~GGi-----~~~~~~~~~~~i~~~~~aGa~Gi 224 (258)
T TIGR01949 163 RLGAELGADIVKTPYT--GDIDSFRDVVKGCPAPVVV-----------AGGP-----KTNSDREFLQMIKDAMEAGAAGV 224 (258)
T ss_pred HHHHHHCCCEEeccCC--CCHHHHHHHHHhCCCcEEE-----------ecCC-----CCCCHHHHHHHHHHHHHcCCcEE
Confidence 5555899999999743 23677888886 5789873 4543 22234566778888889999877
Q ss_pred Ee
Q 016682 257 VL 258 (384)
Q Consensus 257 vl 258 (384)
-+
T Consensus 225 a~ 226 (258)
T TIGR01949 225 AV 226 (258)
T ss_pred eh
Confidence 53
No 269
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.73 E-value=11 Score=37.13 Aligned_cols=165 Identities=18% Similarity=0.194 Sum_probs=95.6
Q ss_pred EEEEecCChHHHHHHHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCCC--CCcCCH
Q 016682 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPFG--TYESST 169 (384)
Q Consensus 94 I~mlTAyD~~sA~iae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPfg--sY~~s~ 169 (384)
+.=+.+.|+.+|..++++|.|=| |+.+ + ...++.-|...|-. +++..+.|+.+ .=-=.| -|....
T Consensus 3 ~lEvcv~s~~~a~~A~~~GAdRiELc~~-L------~~GGlTPS~g~i~~----~~~~~~ipv~vMIRPR~gdF~Ys~~E 71 (248)
T PRK11572 3 LLEICCYSMECALTAQQAGADRIELCAA-P------KEGGLTPSLGVLKS----VRERVTIPVHPIIRPRGGDFCYSDGE 71 (248)
T ss_pred eEEEEECCHHHHHHHHHcCCCEEEEccC-c------CCCCcCCCHHHHHH----HHHhcCCCeEEEEecCCCCCCCCHHH
Confidence 45678999999999999999999 7763 1 12233445555533 33444555443 111112 343333
Q ss_pred HHHHHHHHHHHHHhCCCEEEeC----CCccchHHHHHHHHH--cCCceeeeccCCcccccccCCccccCCCHHHHHHHHH
Q 016682 170 NQAVDTAVRILKEGGMDAIKLE----GGSPSRITAARGIVE--AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (384)
Q Consensus 170 e~av~nA~rl~keaGAdaVKLE----gg~~e~~~~I~alv~--aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~ 243 (384)
-+.+..-++.+++.|+|+|-+- +| .--.+.++.|++ .|.||.=| ..+. .+. +..+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~~dg-~vD~~~~~~Li~~a~~~~vTFH--------RAfD------~~~----d~~~ 132 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLDVDG-HVDMPRMRKIMAAAGPLAVTFH--------RAFD------MCA----NPLN 132 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeECCCC-CcCHHHHHHHHHHhcCCceEEe--------chhh------ccC----CHHH
Confidence 3567777888899999999882 23 223456666665 46777666 1121 111 1223
Q ss_pred HHHHHHHcCCcEEEecCCC------HHHHHHHHhhcCCCEEEEcCCCCCCc
Q 016682 244 TALALQEVGCFSVVLECVP------PPVAAAATSALQIPTIGIGAGPFCSG 288 (384)
Q Consensus 244 rAkAleeAGAf~IvlE~Vp------~ela~~It~~l~IPtIGIGAG~~cDG 288 (384)
....+.+.|++-|+--+=+ .+.++++.+.-+-..|-.|+|-..+-
T Consensus 133 al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~N 183 (248)
T PRK11572 133 ALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGPIIMAGAGVRLSN 183 (248)
T ss_pred HHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHHH
Confidence 3444556699988855432 34555555544444566788876554
No 270
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.72 E-value=2.3 Score=40.54 Aligned_cols=117 Identities=23% Similarity=0.214 Sum_probs=66.5
Q ss_pred HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 016682 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (384)
Q Consensus 107 iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAd 186 (384)
.+-+.|+|-|=+-=.++...-| .++.+....++|++.+....+-+=++. +| .+.++. ..+.|+..++|||
T Consensus 78 ~Av~~GAdEiDvv~n~g~l~~g-------~~~~v~~ei~~i~~~~~g~~lKvIlE~-~~-L~~~ei-~~a~~ia~eaGAD 147 (211)
T TIGR00126 78 EAIKYGADEVDMVINIGALKDG-------NEEVVYDDIRAVVEACAGVLLKVIIET-GL-LTDEEI-RKACEICIDAGAD 147 (211)
T ss_pred HHHHcCCCEEEeecchHhhhCC-------cHHHHHHHHHHHHHHcCCCeEEEEEec-CC-CCHHHH-HHHHHHHHHhCCC
Confidence 3446788887432222222112 234555556666665532223334554 55 566654 4677887799999
Q ss_pred EEEeCCCc------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 187 AIKLEGGS------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 187 aVKLEgg~------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
-||.--|. .+.+..++..+...++|- .-||.| | ++++.+|-+|||+-
T Consensus 148 fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IK-----------aaGGir----t-------~~~a~~~i~aGa~r 200 (211)
T TIGR00126 148 FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVK-----------ASGGVR----T-------AEDAIAMIEAGASR 200 (211)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEE-----------EeCCCC----C-------HHHHHHHHHHhhHH
Confidence 99997442 244555666555455543 356653 5 45677777788753
No 271
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=92.72 E-value=2.6 Score=41.78 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=74.3
Q ss_pred hCCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC---CCcEEEeCCCC
Q 016682 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPLLVGDLPFG 163 (384)
Q Consensus 89 ~~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~---~~~vvaDmPfg 163 (384)
+..-|+++= -+.|+...+.+=++||+.|..-+| ..+++|.+..++.|++-+. .+ |-+|+..-
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s------------~~~~~eni~~t~~v~~~a~~~gv~-veaE~ghl 138 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGS------------HLPLEENIQKTKEIVELAKQYGAT-VEAEIGRV 138 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC------------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeE
Confidence 344575544 578888888888999999987654 3578999999988765543 22 33443322
Q ss_pred ------------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCC---------ccchHHHHHHHHH-cCCceeeec
Q 016682 164 ------------TYESSTNQAVDTAVRILKEGGMDAIKLEGG---------SPSRITAARGIVE-AGIAVMGHV 215 (384)
Q Consensus 164 ------------sY~~s~e~av~nA~rl~keaGAdaVKLEgg---------~~e~~~~I~alv~-aGIPV~gHi 215 (384)
+| .+++++ .++++++|+|.+=+-=| ..--.+.++.+.+ .+||++.|=
T Consensus 139 G~~d~~~~~~g~s~-t~~eea----~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 139 GGSEDGSEDIEMLL-TSTTEA----KRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CCccCCccccccee-CCHHHH----HHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEEC
Confidence 35 578887 46777789999988211 1234567777775 489999984
No 272
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=92.70 E-value=2.3 Score=40.82 Aligned_cols=90 Identities=19% Similarity=0.186 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
..++.++++|+|.|++.|- ...|+..+ ..+ ..++.+++.++.|++.+ |+. .|++++. ++++.
T Consensus 159 ~~~~~l~~~G~~~iivt~i---~~~g~~~g--~~~----~~~~~i~~~~~ipvia~----GGi-~s~~di~----~~~~~ 220 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTSM---DKDGTKSG--YDL----ELTKAVSEAVKIPVIAS----GGA-GKPEHFY----EAFTK 220 (254)
T ss_pred HHHHHHHHcCCCEEEEeCc---CcccCCCC--CCH----HHHHHHHHhCCCCEEEe----CCC-CCHHHHH----HHHHc
Confidence 4467889999999987541 22344322 333 23455666677774443 566 4777773 56755
Q ss_pred hCCCEEEe-----CCCccchHHHHHHHHHcCCce
Q 016682 183 GGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (384)
Q Consensus 183 aGAdaVKL-----Egg~~e~~~~I~alv~aGIPV 211 (384)
+|+++|-+ ||. -...+.++.+.+.||||
T Consensus 221 g~~dgv~~g~a~~~~~-~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 221 GKADAALAASVFHYRE-ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCcceeeEhHHHhCCC-CCHHHHHHHHHHCCCcc
Confidence 66999877 554 44556677777899986
No 273
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.69 E-value=0.81 Score=45.45 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=64.5
Q ss_pred CCCcEEEEec--CCh----HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc-CCCcEEEeCCC
Q 016682 90 NGEPITMVTA--YDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KRPLLVGDLPF 162 (384)
Q Consensus 90 ~g~~I~mlTA--yD~----~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-~~~~vvaDmPf 162 (384)
+|+.-++.++ .+. -.|+.++++|+|.+++-- |.-.+.+-++++.|.+.|++++ +.|+++=|.|-
T Consensus 75 ~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~---------P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 75 AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR---------PMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC---------CcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 4444344544 444 346788899999998752 2234557799999999999999 59999999994
Q ss_pred -CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 163 -GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 163 -gsY~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
-++..+++.. .+|.+--++.+||-.+.
T Consensus 146 ~tg~~l~~~~l----~~L~~~pnivgiKdssd 173 (309)
T cd00952 146 AFKFDFPRAAW----AELAQIPQVVAAKYLGD 173 (309)
T ss_pred hcCCCCCHHHH----HHHhcCCCEEEEEecCC
Confidence 3566676655 35654357899998763
No 274
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.68 E-value=1.2 Score=42.49 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=70.2
Q ss_pred HcC-CCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEE
Q 016682 110 SAG-IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAI 188 (384)
Q Consensus 110 ~AG-iD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaV 188 (384)
+.| +++|..-+- +...-.+.++...++.+++....+|++-|= . .+..+.|||||
T Consensus 37 ~~G~v~~vQlR~K---------~l~~~~~~~~a~~l~~l~~~~gv~liINd~--------~--------dlA~~~~adGV 91 (221)
T PRK06512 37 QGGDVASVILPQY---------GLDEATFQKQAEKLVPVIQEAGAAALIAGD--------S--------RIAGRVKADGL 91 (221)
T ss_pred cCCCccEEEEeCC---------CCCHHHHHHHHHHHHHHHHHhCCEEEEeCH--------H--------HHHHHhCCCEE
Confidence 457 577765422 222224455666777777877778777651 2 23346799999
Q ss_pred EeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCC----CHHHHHHHHHHHHHHHHcCCcEEEecCC---
Q 016682 189 KLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGK----NVTSAVKVVETALALQEVGCFSVVLECV--- 261 (384)
Q Consensus 189 KLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGr----t~~~a~~ll~rAkAleeAGAf~IvlE~V--- 261 (384)
+|-.. +.....++... +..++.|- +.+++ ...++.|||-|.+=.|
T Consensus 92 HLg~~-d~~~~~~r~~~--------------------~~~~iiG~s~~~s~~~a-------~~A~~~gaDYv~~Gpv~t~ 143 (221)
T PRK06512 92 HIEGN-LAALAEAIEKH--------------------APKMIVGFGNLRDRHGA-------MEIGELRPDYLFFGKLGAD 143 (221)
T ss_pred EECcc-ccCHHHHHHhc--------------------CCCCEEEecCCCCHHHH-------HHhhhcCCCEEEECCCCCC
Confidence 99532 21222222221 11223443 22222 2235799999987333
Q ss_pred ------C--HHHHHHHHhhcCCCEEEEcC
Q 016682 262 ------P--PPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 262 ------p--~ela~~It~~l~IPtIGIGA 282 (384)
| .+..+++++.+++|++.||.
T Consensus 144 tK~~~~p~gl~~l~~~~~~~~iPvvAIGG 172 (221)
T PRK06512 144 NKPEAHPRNLSLAEWWAEMIEIPCIVQAG 172 (221)
T ss_pred CCCCCCCCChHHHHHHHHhCCCCEEEEeC
Confidence 1 46788899999999999984
No 275
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=92.61 E-value=2.5 Score=42.98 Aligned_cols=153 Identities=11% Similarity=0.090 Sum_probs=79.9
Q ss_pred hhccCCCCcCCCHHHHHHHHHHHH-cccCCCcEEEeC-----CCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchH
Q 016682 125 VVHGHDTTLPITLEEMLVHCRAVA-RGAKRPLLVGDL-----PFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRI 198 (384)
Q Consensus 125 v~lG~~dT~~VtldeMl~h~raV~-Rga~~~~vvaDm-----PfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~ 198 (384)
-+-.+|.....+++.++.+++... .|.+ .++.--. +.|+...+++-.+..|+|.+|+.=-+.+-+-|=. .+
T Consensus 48 ~I~smPg~~r~sid~l~~~~~~~~~~Gi~-~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVc--Lc 124 (322)
T PRK13384 48 PISTLPGISRLPESALADEIERLYALGIR-YVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDIC--FC 124 (322)
T ss_pred ecCCCCCcceECHHHHHHHHHHHHHcCCC-EEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeee--cc
Confidence 445566666666666666665443 3332 2222211 1244444555555556666655433444443310 00
Q ss_pred HHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc----
Q 016682 199 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL---- 273 (384)
Q Consensus 199 ~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l---- 273 (384)
+ ----||.|+.- +|. + .+++..+.+.+.|..+.+||||+|=.-.. +-.+ ..|.+.|
T Consensus 125 ~---------YT~hGHcGil~------~g~-i--~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g 185 (322)
T PRK13384 125 E---------YTDHGHCGVLH------NDE-V--DNDATVENLVKQSVTAAKAGADMLAPSAMMDGQV-KAIRQGLDAAG 185 (322)
T ss_pred c---------CCCCCceeecc------CCc-C--ccHHHHHHHHHHHHHHHHcCCCeEecccccccHH-HHHHHHHHHCC
Confidence 0 11236766652 121 1 25677788999999999999998876544 4333 5555554
Q ss_pred --CCCEEEEcCCCCCCchhhhHhhhhcCC
Q 016682 274 --QIPTIGIGAGPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 274 --~IPtIGIGAG~~cDGQvLV~~DlLG~~ 300 (384)
++|+++.- ..+++.=.==+-|.+|-.
T Consensus 186 ~~~v~ImSYs-aKyaS~fYGPFRdAa~Sa 213 (322)
T PRK13384 186 FEHVAILAHS-AKFASSFYGPFRAAVDCE 213 (322)
T ss_pred CCCCceeehh-HhhhhhhcchHHHHhcCC
Confidence 46666542 333333333345666554
No 276
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.59 E-value=8.2 Score=35.39 Aligned_cols=139 Identities=20% Similarity=0.196 Sum_probs=85.6
Q ss_pred CcEEEEecCChHH----HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcC
Q 016682 92 EPITMVTAYDYPS----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYES 167 (384)
Q Consensus 92 ~~I~mlTAyD~~s----A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~ 167 (384)
+.+..+...|... ++.+-++|+++|-+-.+- + ..+...+.+++..+...+.+. +. .
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~-----------~----~~~~~i~~l~~~~~~~~iGag----~v-~ 64 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRT-----------P----GALEAIRALRKEFPEALIGAG----TV-L 64 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-----------h----hHHHHHHHHHHHCCCCEEEEE----eC-C
Confidence 4566677777654 455667899999765321 1 123345666666654333332 33 3
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
+.+++ +...+.||++|.+-+. ..+.+++....|++++. |. .|.+ +++.
T Consensus 65 ~~~~~-----~~a~~~Ga~~i~~p~~---~~~~~~~~~~~~~~~i~-------------gv----~t~~-------e~~~ 112 (190)
T cd00452 65 TPEQA-----DAAIAAGAQFIVSPGL---DPEVVKAANRAGIPLLP-------------GV----ATPT-------EIMQ 112 (190)
T ss_pred CHHHH-----HHHHHcCCCEEEcCCC---CHHHHHHHHHcCCcEEC-------------Cc----CCHH-------HHHH
Confidence 55655 3333699999987554 35667777777877651 11 1433 3444
Q ss_pred HHHcCCcEEEec-CCC--HHHHHHHHhhcC-CCEEEEcC
Q 016682 248 LQEVGCFSVVLE-CVP--PPVAAAATSALQ-IPTIGIGA 282 (384)
Q Consensus 248 leeAGAf~IvlE-~Vp--~ela~~It~~l~-IPtIGIGA 282 (384)
..++|||.|-+- +-+ .+..+.+.+.++ +|++-||.
T Consensus 113 A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GG 151 (190)
T cd00452 113 ALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGG 151 (190)
T ss_pred HHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCC
Confidence 457999999653 222 677888888774 99999973
No 277
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.51 E-value=3.9 Score=37.73 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=77.7
Q ss_pred ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHH
Q 016682 98 TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 98 TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~ 177 (384)
+-.+.-.++.+.++|+|+|-.= +-..+...++.++...-.+.+.+......|++| .++++. .
T Consensus 5 Gi~~~ed~~~a~~~Gvd~ig~i-------~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn-------~~~~~i----~ 66 (203)
T cd00405 5 GITTLEDALAAAEAGADAIGFI-------FAPKSPRYVSPEQAREIVAALPPFVKRVGVFVN-------EDLEEI----L 66 (203)
T ss_pred CCCCHHHHHHHHHcCCCEEEEe-------cCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeC-------CCHHHH----H
Confidence 3445667889999999999431 122456677766654433333221111112222 234444 3
Q ss_pred HHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 178 RILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
++.++.|+|+|+|.|. + ..+.++.+.+. |.+++ ++.+-+.....++ .++ .+.|||.+
T Consensus 67 ~ia~~~~~d~Vqlhg~-e-~~~~~~~l~~~~~~~~i----------------~~i~~~~~~~~~~---~~~-~~~~aD~i 124 (203)
T cd00405 67 EIAEELGLDVVQLHGD-E-SPEYCAQLRARLGLPVI----------------KAIRVKDEEDLEK---AAA-YAGEVDAI 124 (203)
T ss_pred HHHHhcCCCEEEECCC-C-CHHHHHHHHhhcCCcEE----------------EEEecCChhhHHH---hhh-ccccCCEE
Confidence 4566789999999775 3 34556666652 54443 1122221111111 222 34699999
Q ss_pred EecCCCH------------HHHHHHHhhcCCCEEEEc
Q 016682 257 VLECVPP------------PVAAAATSALQIPTIGIG 281 (384)
Q Consensus 257 vlE~Vp~------------ela~~It~~l~IPtIGIG 281 (384)
+++.-.. ++.+.+. +++|++.+|
T Consensus 125 l~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaG 159 (203)
T cd00405 125 LLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAG 159 (203)
T ss_pred EEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEEC
Confidence 9997421 3444444 578988777
No 278
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=92.46 E-value=4.1 Score=39.78 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=78.3
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
++.++++|+|.|=+|+ | -.-++|...++.+++-...+-+.+=+ ..+.+.. + +. .++|
T Consensus 28 ~~~L~~~Gv~~IEvG~---------P----~~~~~~~~~~~~l~~~~~~~~v~~~~-----r~~~~di-~---~a-~~~g 84 (262)
T cd07948 28 AKALDAFGVDYIELTS---------P----AASPQSRADCEAIAKLGLKAKILTHI-----RCHMDDA-R---IA-VETG 84 (262)
T ss_pred HHHHHHcCCCEEEEEC---------C----CCCHHHHHHHHHHHhCCCCCcEEEEe-----cCCHHHH-H---HH-HHcC
Confidence 4568999999999984 2 22356666666665433223232211 1234432 2 33 3689
Q ss_pred CCEEEeCCC------------c-----cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 185 MDAIKLEGG------------S-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 185 AdaVKLEgg------------~-----~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
++.|.+--. + +...+.|+.+.+.|+.|+.++ .. .| |++ .+.+++-++.
T Consensus 85 ~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~----ed-----a~----r~~--~~~l~~~~~~ 149 (262)
T cd07948 85 VDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS----ED-----SF----RSD--LVDLLRVYRA 149 (262)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE----Ee-----eC----CCC--HHHHHHHHHH
Confidence 999999431 1 223455567778899988652 11 11 222 3356677778
Q ss_pred HHHcCCcEEEec-C--C--CH---HHHHHHHhhcCCC
Q 016682 248 LQEVGCFSVVLE-C--V--PP---PVAAAATSALQIP 276 (384)
Q Consensus 248 leeAGAf~IvlE-~--V--p~---ela~~It~~l~IP 276 (384)
+.++|++.|.+- . + |. ++.+.|.+.+++|
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~ 186 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD 186 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 888999999876 2 2 53 4455555666655
No 279
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.46 E-value=4.1 Score=37.92 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.+..+.++|+|.|.+++.. ..+++..++ + ...+ ++... .+.+++ .++. +.
T Consensus 72 ~~~~~~~~g~d~v~l~~~~--------------~~~~~~~~~---~-~~i~-~i~~v------~~~~~~----~~~~-~~ 121 (236)
T cd04730 72 LLEVALEEGVPVVSFSFGP--------------PAEVVERLK---A-AGIK-VIPTV------TSVEEA----RKAE-AA 121 (236)
T ss_pred HHHHHHhCCCCEEEEcCCC--------------CHHHHHHHH---H-cCCE-EEEeC------CCHHHH----HHHH-Hc
Confidence 5677788999999987641 133443333 2 2333 33222 134443 3444 58
Q ss_pred CCCEEEeCC----Cc--c---chHHHHHHHHH-cCCceeeeccCC
Q 016682 184 GMDAIKLEG----GS--P---SRITAARGIVE-AGIAVMGHVGLT 218 (384)
Q Consensus 184 GAdaVKLEg----g~--~---e~~~~I~alv~-aGIPV~gHiGLt 218 (384)
|+|.|.+.+ |. . ...+.|+.+.+ .++||+..-|++
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~ 166 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIA 166 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCC
Confidence 999999965 21 1 23456666665 379999764443
No 280
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=92.44 E-value=9.2 Score=40.82 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=85.0
Q ss_pred HHHHHHhhhCCCcEEEEec---------C--Ch--HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH
Q 016682 81 LTHLRQKHKNGEPITMVTA---------Y--DY--PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTA---------y--D~--~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV 147 (384)
+..+++.. .+.+|.|+.- | |. ..-+.+.+.|+|++-+.|++- .++-|..+++++
T Consensus 75 lr~~r~~~-~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln------------d~~n~~~ai~~a 141 (468)
T PRK12581 75 LRTLKKGL-PNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALN------------DPRNIQQALRAV 141 (468)
T ss_pred HHHHHHhC-CCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCC------------CHHHHHHHHHHH
Confidence 44555544 3456666632 2 32 226667788999999999762 567778888887
Q ss_pred HcccCCCcEEEeCCCCCCcC----CHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeeccC
Q 016682 148 ARGAKRPLLVGDLPFGTYES----STNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHVGL 217 (384)
Q Consensus 148 ~Rga~~~~vvaDmPfgsY~~----s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHiGL 217 (384)
++.= .- +.+- .+|.. +.+-.++.+.++. +.||+.|.|-|-. .+..+.|+++.+. ++|+--|
T Consensus 142 k~~G-~~-~~~~---i~yt~sp~~t~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H--- 212 (468)
T PRK12581 142 KKTG-KE-AQLC---IAYTTSPVHTLNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVH--- 212 (468)
T ss_pred HHcC-CE-EEEE---EEEEeCCcCcHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEE---
Confidence 6522 11 2111 23333 3444666676666 7999999999852 5667778887763 5787777
Q ss_pred CcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 218 tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+..| -.+.-..+-.+|||+.|
T Consensus 213 ---~Hnt~G-------------lA~An~laAieAGad~v 235 (468)
T PRK12581 213 ---THATSG-------------ISQMTYLAAVEAGADRI 235 (468)
T ss_pred ---eCCCCc-------------cHHHHHHHHHHcCCCEE
Confidence 222222 12334555568999854
No 281
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=92.41 E-value=11 Score=44.61 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=88.7
Q ss_pred HcCCCEEEecchhhhhhccCCCC-cCCCHHHHHHHHHHHHccc---------CCCcEEEeCCCCC-------------C-
Q 016682 110 SAGIDICLVGDSAAMVVHGHDTT-LPITLEEMLVHCRAVARGA---------KRPLLVGDLPFGT-------------Y- 165 (384)
Q Consensus 110 ~AGiD~IlVGDSl~mv~lG~~dT-~~VtldeMl~h~raV~Rga---------~~~~vvaDmPfgs-------------Y- 165 (384)
+||.|+|.+- +.+++..++.+- ..-...+|...+-.++|.+ +..||.++++-.+ |
T Consensus 61 ~AGAdII~TN-TF~a~~~~L~~yg~~~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGsIGP~g~~~~lgp~~~~~~~~ 139 (1178)
T TIGR02082 61 EAGADIIETN-TFNSTTISQADYDLEDLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGSMGPTNKTATLSPDVERPGFR 139 (1178)
T ss_pred HHhchheecC-CccCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEeCCCCCCccCCCccccCccC
Confidence 6888977643 333333333221 1112344543333333322 1357888885322 1
Q ss_pred cCCHHHHHH---HHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHH------cCCceeeeccCCcccccccCCccccCCC
Q 016682 166 ESSTNQAVD---TAVRILKEGGMDAIKLEGGS--PSRITAARGIVE------AGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 166 ~~s~e~av~---nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~------aGIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
..+.+++.+ --++.+.++|||.+-+|--. .|....+.++.+ .++|||... .+.. -.|...-|.+
T Consensus 140 ~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~-~~~d----~~Gr~~~G~~ 214 (1178)
T TIGR02082 140 NVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISG-TIVD----TSGRTLSGQT 214 (1178)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEE-EEEC----CCCeeCCCCc
Confidence 123444333 33445558999999999641 344455555554 479998642 1111 1344456666
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEecCC--CH---HHHHHHHhhcCCCEEEE-cCC
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLECV--PP---PVAAAATSALQIPTIGI-GAG 283 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE~V--p~---ela~~It~~l~IPtIGI-GAG 283 (384)
.+.+... ++..|+++|=+=|. |. +.++.+++..++|++.. -||
T Consensus 215 ~~~~~~~------l~~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~vyPNAG 263 (1178)
T TIGR02082 215 IEAFLTS------LEHAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVSCHPNAG 263 (1178)
T ss_pred HHHHHHH------HhcCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEEEEeCCC
Confidence 5554433 35789999999998 42 44466666667888766 455
No 282
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.38 E-value=3.2 Score=39.66 Aligned_cols=88 Identities=24% Similarity=0.272 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCEEEecc--hhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVGD--SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGD--Sl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
..+..+++.|++.|++.| .-+ +..|+ . +...+.+++.++.| |++- |+. .|+++.. +++
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g-~~~g~------d----~~~i~~~~~~~~ip-via~---GGv-~s~~d~~----~~~ 216 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDG-TKNGY------D----LELTRAVSDAVNVP-VIAS---GGA-GNLEHFV----EAF 216 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCC-CCCCc------C----HHHHHHHHhhCCCC-EEEE---CCC-CCHHHHH----HHH
Confidence 445777889999887754 222 23454 1 33445566667777 4443 455 4777774 466
Q ss_pred HHhCCCEEEe-----CCCccchHHHHHHHHHcCCce
Q 016682 181 KEGGMDAIKL-----EGGSPSRITAARGIVEAGIAV 211 (384)
Q Consensus 181 keaGAdaVKL-----Egg~~e~~~~I~alv~aGIPV 211 (384)
+..||++|-+ ||. -...+..+.+.+.||+|
T Consensus 217 ~~~G~~gvivg~al~~~~-~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 217 TEGGADAALAASIFHFGE-ITIGELKAYLAEQGIPV 251 (253)
T ss_pred HhCCccEEeEhHHHHcCC-CCHHHHHHHHHHCCCcc
Confidence 5579999988 554 44455666777789886
No 283
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.37 E-value=5.6 Score=40.75 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=70.1
Q ss_pred EEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC--CCcEEEeCCCCCCcCCHHH
Q 016682 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQ 171 (384)
Q Consensus 94 I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~--~~~vvaDmPfgsY~~s~e~ 171 (384)
+++++-....-...+-++|+|.|-+..+..-..+ ..-...|.+|++..+....+-+. ...|..+.|+.+. .+++.
T Consensus 70 i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~--~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r-~~~~~ 146 (378)
T PRK11858 70 ILALNRAVKSDIDASIDCGVDAVHIFIATSDIHI--KHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR-TDLDF 146 (378)
T ss_pred EEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC-CCHHH
Confidence 3333333344566677899999865544432211 01123566777664443322211 1236677887555 68888
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
.++-+.++. +.|++.|.|-|-. .+..+.|+.+.+. ++|+--|
T Consensus 147 l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 194 (378)
T PRK11858 147 LIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKELVEAVDIPIEVH 194 (378)
T ss_pred HHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 888776665 7999999999842 4566777777754 6666555
No 284
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.34 E-value=1.5 Score=46.91 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=44.5
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc-EEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~-vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
...+..+-++|+|+|.+. +..|+++.. +...+.++...+.++ |++ |+- .+++++ ..++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd-----~a~g~~~~~-------~~~i~~ir~~~~~~~~V~a----GnV-~t~e~a----~~li 302 (502)
T PRK07107 244 AERVPALVEAGADVLCID-----SSEGYSEWQ-------KRTLDWIREKYGDSVKVGA----GNV-VDREGF----RYLA 302 (502)
T ss_pred HHHHHHHHHhCCCeEeec-----CcccccHHH-------HHHHHHHHHhCCCCceEEe----ccc-cCHHHH----HHHH
Confidence 477888888999999885 445665532 444555655555432 333 445 467776 4566
Q ss_pred HHhCCCEEEeC
Q 016682 181 KEGGMDAIKLE 191 (384)
Q Consensus 181 keaGAdaVKLE 191 (384)
++|||+||+-
T Consensus 303 -~aGAd~I~vg 312 (502)
T PRK07107 303 -EAGADFVKVG 312 (502)
T ss_pred -HcCCCEEEEC
Confidence 6999999993
No 285
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.30 E-value=4 Score=40.12 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE-EecchhhhhhccC-------C------C--Cc--CCCH
Q 016682 76 NQRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGH-------D------T--TL--PITL 137 (384)
Q Consensus 76 ~~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I-lVGDSl~mv~lG~-------~------d--T~--~Vtl 137 (384)
.+.+|..++.+..+.= ...|+.+.++|||.| +-+. +|| | | ++ .=-+
T Consensus 128 ~~~mt~~ei~~~i~~~----------~~aA~~a~~aGfDgveih~~------~gyL~~qFlsp~~n~R~d~yGgs~enr~ 191 (327)
T cd02803 128 PREMTKEEIEQIIEDF----------AAAARRAKEAGFDGVEIHGA------HGYLLSQFLSPYTNKRTDEYGGSLENRA 191 (327)
T ss_pred CCcCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEcch------hhhHHHHhcCccccCCCcccCCCHHHHH
Confidence 3568999998876531 246888999999999 4321 222 1 1 11 1112
Q ss_pred HHHHHHHHHHHcccCCC-cEEEeCCCCCC---cCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 138 EEMLVHCRAVARGAKRP-LLVGDLPFGTY---ESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 138 deMl~h~raV~Rga~~~-~vvaDmPfgsY---~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
..+++.+++|++.++.- .|.+++.-..+ ..+.+++++.+.++. +.|+|.|.+-++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~-~~G~d~i~vs~g 250 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALE-EAGVDALHVSGG 250 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCC
Confidence 34567778888877432 35577653221 136888888887765 789999987654
No 286
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.23 E-value=1.6 Score=45.21 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCCCHHHHHHhhhC-CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 77 QRVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 77 ~~~t~~~lr~~k~~-g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
..+|..+|..+++. +-||++=++-+.-.|+.+-++|+|.|.|+.+.|-. .|+.+-|++-+.+..+++.. ..|
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~----~d~~~~t~~~L~ei~~~~~~--~~~- 310 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ----VDGSIAALDALPEIVEAVGD--RLT- 310 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC----CCCCcCHHHHHHHHHHHhcC--CCe-
Confidence 35788888887765 56999999999999999999999999988766632 35555566655544444421 234
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|++| |+.. +..+.+ +.+ ..||++|-+
T Consensus 311 vi~d---GGIr-~G~Dv~----KAL-aLGA~~v~i 336 (383)
T cd03332 311 VLFD---SGVR-TGADIM----KAL-ALGAKAVLI 336 (383)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEE
Confidence 8888 6663 555553 556 589999998
No 287
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.22 E-value=2.9 Score=42.31 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=91.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe--cc--hhhhhhcc----CCC--CcCC--CHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GD--SAAMVVHG----HDT--TLPI--TLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV--GD--Sl~mv~lG----~~d--T~~V--tldeMl~h~ 144 (384)
+.+|..++.+..+. | .-.|+.+.+||||.|-+ |- -+....-- ..| ++.+ -+.-.++..
T Consensus 130 ~~mt~eeI~~ii~~---------f-~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii 199 (337)
T PRK13523 130 VEMTKEQIKETVLA---------F-KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREII 199 (337)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHH
Confidence 46899998887653 1 24788899999999942 31 11100000 011 1111 133345666
Q ss_pred HHHHcccCCCcEE----EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc----------chHHHHHHHHH-cCC
Q 016682 145 RAVARGAKRPLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP----------SRITAARGIVE-AGI 209 (384)
Q Consensus 145 raV~Rga~~~~vv----aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~----------e~~~~I~alv~-aGI 209 (384)
++|++.++.|+.+ .|.--+++ ++++.++.+.+|- +.|+|.|.+-+|.. ...+.++.+.+ .+|
T Consensus 200 ~~ir~~~~~~v~vRis~~d~~~~G~--~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i 276 (337)
T PRK13523 200 DAVKEVWDGPLFVRISASDYHPGGL--TVQDYVQYAKWMK-EQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI 276 (337)
T ss_pred HHHHHhcCCCeEEEecccccCCCCC--CHHHHHHHHHHHH-HcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC
Confidence 7777776555443 23333454 6899988887765 78999999987730 12345555554 378
Q ss_pred ceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhhc
Q 016682 210 AVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSAL 273 (384)
Q Consensus 210 PV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~l 273 (384)
||++- |++ +|.+.++++ +++-+||+|.+= .+ .+++...+.+.+
T Consensus 277 pVi~~-----------G~i----~~~~~a~~~------l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 277 ATGAV-----------GLI----TSGAQAEEI------LQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred cEEEe-----------CCC----CCHHHHHHH------HHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 98752 332 244344333 333448877654 22 466666666554
No 288
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.22 E-value=1.2 Score=41.62 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=58.8
Q ss_pred CHHHHH-HhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 80 TLTHLR-QKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 80 t~~~lr-~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
++..+. ..++.+...+++++.+...+..+.++|+|.|.++- .+..-... .+...++ ...+.++...+.| |++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~-~g~t~~~~-~~~~~~~----~~l~~i~~~~~ip-via 182 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTL-SGYTEETA-KTEDPDF----ELLKELRKALGIP-VIA 182 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccC-cccccccc-CCCCCCH----HHHHHHHHhcCCC-EEE
Confidence 444444 45555557778899999999999999999986531 11111000 1222233 4556666666666 555
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
. |+. .+++++ .+++ +.|||+|-+
T Consensus 183 ~---GGI-~~~~~~----~~~l-~~GadgV~v 205 (219)
T cd04729 183 E---GRI-NSPEQA----AKAL-ELGADAVVV 205 (219)
T ss_pred e---CCC-CCHHHH----HHHH-HCCCCEEEE
Confidence 4 455 366666 5677 589999987
No 289
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=92.21 E-value=3.6 Score=39.60 Aligned_cols=153 Identities=25% Similarity=0.315 Sum_probs=88.4
Q ss_pred ChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 101 DYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 101 D~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
|-.-++++++.|.|+|+||-|.+. . -++|+++...+.+++ +.|.+. .|. + +++. .
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v--------~-~~~~~~~~~ik~~~~--~~Pvil--fp~-~----~~~i-------~ 68 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV--------S-STLDNVVRLIKRIRR--PVPVIL--FPS-N----PEAV-------S 68 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch--------h-hhHHHHHHHHHHhcC--CCCEEE--eCC-C----cccc-------C
Confidence 344678888899999999966522 1 378888887887766 456443 231 2 2222 1
Q ss_pred HHhCCCEEEeCC----Cc-cc----hHHHHHHHHH--cCCce--eeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 181 KEGGMDAIKLEG----GS-PS----RITAARGIVE--AGIAV--MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 181 keaGAdaVKLEg----g~-~e----~~~~I~alv~--aGIPV--~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
-|||++-+=- +. .+ +.+.++.+-. .+.-+ .|=|=++|.... ++.-..++...-+.+..-|++
T Consensus 69 --~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v---~~v~~a~~~~~~e~~~ayA~a 143 (219)
T cd02812 69 --PGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTV---ARVTGAKTDLKPEDAAAYALA 143 (219)
T ss_pred --cCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCce---eeeeccCcCCCHHHHHHHHHH
Confidence 3577776531 10 11 1122222211 11111 122223342211 111123333445678888999
Q ss_pred HHHcCCcEEEecC----CCHHHHHHHHhhc-CCCEEEEcCCC
Q 016682 248 LQEVGCFSVVLEC----VPPPVAAAATSAL-QIPTIGIGAGP 284 (384)
Q Consensus 248 leeAGAf~IvlE~----Vp~ela~~It~~l-~IPtIGIGAG~ 284 (384)
-|.-|--.++||. ++.++++.+.+.+ ++|++ +|.|=
T Consensus 144 ae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~-vGGGI 184 (219)
T cd02812 144 AEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLI-VGGGI 184 (219)
T ss_pred HHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEE-EeCCC
Confidence 9999988999994 3589999999999 99988 57765
No 290
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.21 E-value=2.2 Score=45.04 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=41.7
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e~av~nA~r 178 (384)
.+...++.+-++|+|+|.+- +. +|+. ..++...+.+++-.+ .++++ |+- .+.+++ .+
T Consensus 228 ~~~e~a~~L~~agvdvivvD-~a----~g~~-------~~vl~~i~~i~~~~p~~~vi~-----g~v-~t~e~a----~~ 285 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVD-TA----HGHS-------EGVLDRVREIKAKYPDVQIIA-----GNV-ATAEAA----RA 285 (486)
T ss_pred chHHHHHHHHHhCCCEEEEE-CC----CCcc-------hhHHHHHHHHHhhCCCCCEEE-----ecc-CCHHHH----HH
Confidence 44667777888899977542 21 2332 345555666666553 34344 333 466666 34
Q ss_pred HHHHhCCCEEEeCC
Q 016682 179 ILKEGGMDAIKLEG 192 (384)
Q Consensus 179 l~keaGAdaVKLEg 192 (384)
++ ++|||+|++-+
T Consensus 286 l~-~aGad~i~vg~ 298 (486)
T PRK05567 286 LI-EAGADAVKVGI 298 (486)
T ss_pred HH-HcCCCEEEECC
Confidence 66 68999998743
No 291
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=92.18 E-value=3.3 Score=40.24 Aligned_cols=124 Identities=25% Similarity=0.223 Sum_probs=69.4
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH---HcccCCCcEEEeCCCCCC---cCCHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV---ARGAKRPLLVGDLPFGTY---ESSTNQAVDTAVR 178 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV---~Rga~~~~vvaDmPfgsY---~~s~e~av~nA~r 178 (384)
++-+-+.|+|.+-+-.-.+. ...++++.-.++| ++....||++-+.|.|-. ..++++ +..+.+
T Consensus 99 ve~A~~~Gad~v~~~~~~g~----------~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~-i~~a~~ 167 (267)
T PRK07226 99 VEEAIKLGADAVSVHVNVGS----------ETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEV-VAHAAR 167 (267)
T ss_pred HHHHHHcCCCEEEEEEecCC----------hhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHH-HHHHHH
Confidence 45566778887743322211 1133444444444 444567877754332211 014444 444556
Q ss_pred HHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 179 ILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 179 l~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
+..+.|||-||..-. .-.+.++.+++ ..|||+ ..||-+. .|. +++++.....-+|||+++-
T Consensus 168 ~a~e~GAD~vKt~~~--~~~~~l~~~~~~~~ipV~-----------a~GGi~~--~~~---~~~l~~v~~~~~aGA~Gis 229 (267)
T PRK07226 168 VAAELGADIVKTNYT--GDPESFREVVEGCPVPVV-----------IAGGPKT--DTD---REFLEMVRDAMEAGAAGVA 229 (267)
T ss_pred HHHHHCCCEEeeCCC--CCHHHHHHHHHhCCCCEE-----------EEeCCCC--CCH---HHHHHHHHHHHHcCCcEEe
Confidence 666899999999732 13567778876 478987 3566421 133 3455555555779998765
No 292
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.17 E-value=9 Score=38.82 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=71.2
Q ss_pred CCCcEEEEe---cCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCc
Q 016682 90 NGEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE 166 (384)
Q Consensus 90 ~g~~I~mlT---AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~ 166 (384)
++.++.++- -++....+.+.++|+|.|-+.++..- .+....+++.+++. .. -+.+.+.. ++.
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e------------~~~~~~~i~~ak~~-G~-~v~~~l~~-a~~ 140 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE------------ADVSEQHIGLAREL-GM-DTVGFLMM-SHM 140 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch------------HHHHHHHHHHHHHC-CC-eEEEEEEe-ccC
Confidence 345666543 23666677888999999876653211 23456666666532 22 24444443 344
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc---CCceeee
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA---GIAVMGH 214 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a---GIPV~gH 214 (384)
.+++..++.+.++. +.|++.|.|-|.. .++.+.|+++.+. .||+--|
T Consensus 141 ~~~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 141 APPEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 68888888876655 7999999999853 5677888888865 5777666
No 293
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.14 E-value=0.98 Score=46.23 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCEEEeCCCc---------------------------cchHHHHHHHHHc---CCceeeeccCCcccc
Q 016682 173 VDTAVRILKEGGMDAIKLEGGS---------------------------PSRITAARGIVEA---GIAVMGHVGLTPQAI 222 (384)
Q Consensus 173 v~nA~rl~keaGAdaVKLEgg~---------------------------~e~~~~I~alv~a---GIPV~gHiGLtPQ~~ 222 (384)
.+.| +..+++|.|+|-|-++. .-..+.|++++++ .+||.-= |.|-..
T Consensus 147 ~~AA-~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vR--is~~~~ 223 (361)
T cd04747 147 ARAA-ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILR--FSQWKQ 223 (361)
T ss_pred HHHH-HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEE--ECcccc
Confidence 4444 44457999999998651 1223555555553 3666532 222110
Q ss_pred cccCCcccc-CCCHHHHHHHHHHHHHHHHcCCcEEEecCC----------CHHHHHHHHhhcCCCEEEEcC
Q 016682 223 SVLGGFRPQ-GKNVTSAVKVVETALALQEVGCFSVVLECV----------PPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 223 ~~lgGfrvq-Grt~~~a~~ll~rAkAleeAGAf~IvlE~V----------p~ela~~It~~l~IPtIGIGA 282 (384)
..|... |.|. ++.++-++.++++|+|.|-+-+- +.++++.+.+.+++|+++.|.
T Consensus 224 ---~~~~~~~g~~~---~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~ 288 (361)
T cd04747 224 ---QDYTARLADTP---DELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGS 288 (361)
T ss_pred ---cccccCCCCCH---HHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECC
Confidence 112111 4454 36677778889999999865321 246778899999999998775
No 294
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=92.08 E-value=2.9 Score=45.15 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHH-------HHHH
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ-------AVDT 175 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~-------av~n 175 (384)
..|+...+.|+|-|.+=|--+.. ..+..-+.|+...+.|++.+..|+.++ |+. .|.++ +++.
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~------~~~~~~~~~~~~i~~i~~~~~ip~~vG----GGI-r~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFR------DFPLGDLPMLEVLRRASENVFVPLTVG----GGI-RDFTDANGRYYSSLEV 339 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCc------CCcccchhHHHHHHHHHhhCCCCEEEc----CCc-cccccccccccchHHH
Confidence 46888889999988654432210 112233456777788888777776553 344 23333 4666
Q ss_pred HHHHHHHhCCCEEEeCCCccc------------hHHHHHHHHHc-CCc-eeeeccCCccccc------------------
Q 016682 176 AVRILKEGGMDAIKLEGGSPS------------RITAARGIVEA-GIA-VMGHVGLTPQAIS------------------ 223 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~~e------------~~~~I~alv~a-GIP-V~gHiGLtPQ~~~------------------ 223 (384)
+.+++ ++|||=|-|--..-+ -.+.|+.+.+. |=- |+ +++-+.+..
T Consensus 340 ~~~~l-~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~iv--vsiD~k~~~~~~~~~~~~~~~~~~~~~ 416 (538)
T PLN02617 340 ASEYF-RSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVV--VSIDPRRVYVKDPSDVPFKTVKVTNPG 416 (538)
T ss_pred HHHHH-HcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEE--EEEecCcCcccCccccccccccccccC
Confidence 78899 599999998321000 12567776653 321 22 223332110
Q ss_pred ccCC----c--cccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC---------CHHHHHHHHhhcCCCEEEE-cCCCC
Q 016682 224 VLGG----F--RPQGKNVTSAVKVVETALALQEVGCFSVVLECV---------PPPVAAAATSALQIPTIGI-GAGPF 285 (384)
Q Consensus 224 ~lgG----f--rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V---------p~ela~~It~~l~IPtIGI-GAG~~ 285 (384)
..|. | .+.|-.......+++-++.+++.||--|++-.| .-++.+.|++.++||+|-= |+|.-
T Consensus 417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~ 494 (538)
T PLN02617 417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTP 494 (538)
T ss_pred cCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCH
Confidence 0000 1 122322223356788999999999999999888 3789999999999999954 44443
No 295
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.04 E-value=1.6 Score=40.76 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 79 ~t~~~lr~~k~~-g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
.++.++.+.-++ ....+++.+.+...++.+.++|+|+|.++- .|+......+....+..++.++...+.| |+
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~------~g~t~~~~~~~~~~~~~i~~i~~~~~iP-vi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTL------SGYTEETKKPEEPDFALLKELLKAVGCP-VI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCC------ceeecCCCCCCCcCHHHHHHHHHhCCCC-EE
Confidence 355565554444 455677888888899999999999986531 1221111011111234556666666666 55
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
+. |+. .+++++ .+++ +.|||+|-+=
T Consensus 178 a~---GGI-~t~~~~----~~~l-~~GadgV~iG 202 (221)
T PRK01130 178 AE---GRI-NTPEQA----KKAL-ELGAHAVVVG 202 (221)
T ss_pred EE---CCC-CCHHHH----HHHH-HCCCCEEEEc
Confidence 54 466 367766 4566 5899999883
No 296
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.03 E-value=1.8 Score=40.49 Aligned_cols=137 Identities=24% Similarity=0.207 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-++.++++|+|.|=+| ++...+-..+.|-...+.+ +..-+.+-.. + . .+.++.+.+.+++.
T Consensus 19 i~~~L~~~Gv~~iEvg---------~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~---~--~-~~~i~~~~~~~~~~ 79 (237)
T PF00682_consen 19 IAKALDEAGVDYIEVG---------FPFASEDDFEQVRRLREAL----PNARLQALCR---A--N-EEDIERAVEAAKEA 79 (237)
T ss_dssp HHHHHHHHTTSEEEEE---------HCTSSHHHHHHHHHHHHHH----HSSEEEEEEE---S--C-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCEEEEc---------ccccCHHHHHHhhhhhhhh----cccccceeee---e--h-HHHHHHHHHhhHhc
Confidence 3567899999999998 2222233334443333333 3333433322 1 2 23455555555689
Q ss_pred CCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+-... +...+.|+.+.+.|+.|+-. ++- .++++ .+++++-++
T Consensus 80 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~--~~~-----------~~~~~--~~~~~~~~~ 144 (237)
T PF00682_consen 80 GIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFG--CED-----------ASRTD--PEELLELAE 144 (237)
T ss_dssp TSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEE--ETT-----------TGGSS--HHHHHHHHH
T ss_pred cCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeC--ccc-----------ccccc--HHHHHHHHH
Confidence 99999987642 23345566666889988422 111 12332 246777788
Q ss_pred HHHHcCCcEEEec-C----CC---HHHHHHHHhhcC
Q 016682 247 ALQEVGCFSVVLE-C----VP---PPVAAAATSALQ 274 (384)
Q Consensus 247 AleeAGAf~IvlE-~----Vp---~ela~~It~~l~ 274 (384)
.+.++|++.|.+- . .| .++.+.+.+.++
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~ 180 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREALP 180 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHST
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhcc
Confidence 8888899999987 2 25 355666666666
No 297
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=91.96 E-value=12 Score=35.71 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=88.0
Q ss_pred EEEEecCChHHHHHHHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCCcCCHH-
Q 016682 94 ITMVTAYDYPSAVHLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTYESSTN- 170 (384)
Q Consensus 94 I~mlTAyD~~sA~iae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY~~s~e- 170 (384)
+.=+.++++.+|..+++.|+|=| |+.+ +. ..++.-|+..+ +.+++..+.|+.+-==|- |+|..|.+
T Consensus 2 ~lEvcv~s~~~a~~A~~~GAdRiELc~~-l~------~GGlTPS~g~i----~~~~~~~~ipv~vMIRpr~gdF~Ys~~E 70 (201)
T PF03932_consen 2 ILEVCVESLEDALAAEAGGADRIELCSN-LE------VGGLTPSLGLI----RQAREAVDIPVHVMIRPRGGDFVYSDEE 70 (201)
T ss_dssp EEEEEESSHHHHHHHHHTT-SEEEEEBT-GG------GT-B---HHHH----HHHHHHTTSEEEEE--SSSS-S---HHH
T ss_pred eEEEEeCCHHHHHHHHHcCCCEEEECCC-cc------CCCcCcCHHHH----HHHHhhcCCceEEEECCCCCCccCCHHH
Confidence 45578999999999999999999 7762 21 12334455544 333345566644421232 23333444
Q ss_pred -HHHHHHHHHHHHhCCCEEEe----CCCccchHHHHHHHHH--cCCceeeeccCCcccccccCCccccCCCHHHHHHHHH
Q 016682 171 -QAVDTAVRILKEGGMDAIKL----EGGSPSRITAARGIVE--AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (384)
Q Consensus 171 -~av~nA~rl~keaGAdaVKL----Egg~~e~~~~I~alv~--aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~ 243 (384)
+.+..-++.+++.|++++-+ +++ .--.+.++.|++ .|.|+.=| ..+. .+.+ -.+.++
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~~dg-~iD~~~~~~Li~~a~~~~~tFH--------RAfD------~~~d-~~~al~ 134 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALTEDG-EIDEEALEELIEAAGGMPVTFH--------RAFD------EVPD-PEEALE 134 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BETTS-SB-HHHHHHHHHHHTTSEEEE---------GGGG------GSST-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeECCCC-CcCHHHHHHHHHhcCCCeEEEe--------CcHH------HhCC-HHHHHH
Confidence 56777788889999999987 344 333466666664 48888877 1121 1111 233444
Q ss_pred HHHHHHHcCCcEEEecCCC------HHHHHHHHhhc-CCCEEEEcCCCCCC
Q 016682 244 TALALQEVGCFSVVLECVP------PPVAAAATSAL-QIPTIGIGAGPFCS 287 (384)
Q Consensus 244 rAkAleeAGAf~IvlE~Vp------~ela~~It~~l-~IPtIGIGAG~~cD 287 (384)
+ +.+.|.+-|+--+=+ -+..+++.+.- +-..|-.|+|-.++
T Consensus 135 ~---L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~Im~GgGv~~~ 182 (201)
T PF03932_consen 135 Q---LIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEIMPGGGVRAE 182 (201)
T ss_dssp H---HHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEEEEESS--TT
T ss_pred H---HHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHH
Confidence 4 445599999854321 34555555543 34467778776543
No 298
>TIGR00035 asp_race aspartate racemase.
Probab=91.84 E-value=0.37 Score=45.51 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEEEc
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIGIG 281 (384)
.++-...+++.++.|+++||+.|++-|-. .....+|.+.+++|+++|.
T Consensus 57 ~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~ 105 (229)
T TIGR00035 57 EDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMI 105 (229)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechH
Confidence 34456789999999999999999999986 4558899999999999974
No 299
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=91.81 E-value=11 Score=35.08 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=86.4
Q ss_pred HHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC-cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCE
Q 016682 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDA 187 (384)
Q Consensus 109 e~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~-~vvaDmPfgsY~~s~e~av~nA~rl~keaGAda 187 (384)
.+.|+|.+++-- -++.+++...++.+.- -.+++.|+|. .+.+.-+..+.+.+ +.|||.
T Consensus 27 ~~~~~~av~v~p------------------~~v~~~~~~l~~~~~~v~~~~~fp~g~--~~~~~k~~eve~A~-~~GAde 85 (203)
T cd00959 27 KEYGFAAVCVNP------------------CFVPLAREALKGSGVKVCTVIGFPLGA--TTTEVKVAEAREAI-ADGADE 85 (203)
T ss_pred HHcCCCEEEEcH------------------HHHHHHHHHcCCCCcEEEEEEecCCCC--CcHHHHHHHHHHHH-HcCCCE
Confidence 346899998752 2244444333333211 1227888865 35666666677777 579999
Q ss_pred EEe--------CCCccchHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 188 IKL--------EGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 188 VKL--------Egg~~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
|.+ +|...+..+-|+.+++. |+|+..-+. .+.+ + .+++..-++...++|||.|=
T Consensus 86 vdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e--------~~~l-----~---~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 86 IDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILE--------TGLL-----T---DEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred EEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEe--------cCCC-----C---HHHHHHHHHHHHHhCCCEEE
Confidence 977 33324466777777764 677653111 1111 2 24677778899999999886
Q ss_pred ec--C----CCHHHHHHHHhhcC--CCEEEEcCCCCCCchhhhHh
Q 016682 258 LE--C----VPPPVAAAATSALQ--IPTIGIGAGPFCSGQVLVYH 294 (384)
Q Consensus 258 lE--~----Vp~ela~~It~~l~--IPtIGIGAG~~cDGQvLV~~ 294 (384)
.- - ...+.++.+.+.+. +|+-. -.|..++-|.|-+-
T Consensus 150 TsTG~~~~~at~~~v~~~~~~~~~~v~ik~-aGGikt~~~~l~~~ 193 (203)
T cd00959 150 TSTGFGPGGATVEDVKLMKEAVGGRVGVKA-AGGIRTLEDALAMI 193 (203)
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCceEEE-eCCCCCHHHHHHHH
Confidence 64 1 12344455555554 55443 33455777776665
No 300
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.71 E-value=11 Score=41.30 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC--CCCCcCCHHHHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP--FGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP--fgsY~~s~e~av~nA~rl~ke 182 (384)
-+.+-++|+|++-+-|++.-+ +.|...++.++. ... .+.+.+. +..| .+++..++.+.++. +
T Consensus 97 v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~-~G~-~v~~~i~~t~~p~-~~~~~~~~~~~~~~-~ 160 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKK-HGA-HAQGTISYTTSPV-HTLETYLDLAEELL-E 160 (582)
T ss_pred HHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHH-cCC-EEEEEEEeccCCC-CCHHHHHHHHHHHH-H
Confidence 366778899999888888542 456666665543 222 2333222 2233 37888888887776 7
Q ss_pred hCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 183 GGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 183 aGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
+||+.|.|-|-. .+..+.|++|.+. ++|+--| ..+.. |+ .+.-..+-.+|||+.|
T Consensus 161 ~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H------~Hnt~-Gl------------a~An~laAveaGa~~v 221 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLH------SHATT-GM------------AEMALLKAIEAGADGI 221 (582)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEE------ecCCC-Cc------------HHHHHHHHHHhCCCEE
Confidence 999999999842 5566778888753 6787776 22222 21 2334556678999854
No 301
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=91.71 E-value=4 Score=39.93 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC
Q 016682 103 PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP 154 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~ 154 (384)
-.|+.+.++|-|+|+||-|. .+|.+.|....++|+...+.|
T Consensus 32 ei~~~~~~~GTDaImIGGS~-----------gvt~~~~~~~v~~ik~~~~lP 72 (240)
T COG1646 32 EIAEAAAEAGTDAIMIGGSD-----------GVTEENVDNVVEAIKERTDLP 72 (240)
T ss_pred HHHHHHHHcCCCEEEECCcc-----------cccHHHHHHHHHHHHhhcCCC
Confidence 44667788999999999665 578788888888887555555
No 302
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.66 E-value=4 Score=41.27 Aligned_cols=83 Identities=18% Similarity=0.062 Sum_probs=49.7
Q ss_pred HHHHHHHHcC--CCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC-----CCcEEEeCCCCCCcCCHHHHHHH
Q 016682 103 PSAVHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK-----RPLLVGDLPFGTYESSTNQAVDT 175 (384)
Q Consensus 103 ~sA~iae~AG--iD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~-----~~~vvaDmPfgsY~~s~e~av~n 175 (384)
-.+.++++++ +|+|-+--|--++- |..+ .-.-+.+.+.+++|++.++ .| |.+=|.. . .+.++..+-
T Consensus 158 d~~~~~~~~~~~ad~lelN~scP~~~-g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~P-V~vKlsp-~--~~~~~~~~i 230 (344)
T PRK05286 158 DYLICLEKLYPYADYFTVNISSPNTP-GLRD--LQYGEALDELLAALKEAQAELHGYVP-LLVKIAP-D--LSDEELDDI 230 (344)
T ss_pred HHHHHHHHHHhhCCEEEEEccCCCCC-Cccc--ccCHHHHHHHHHHHHHHHhccccCCc-eEEEeCC-C--CCHHHHHHH
Confidence 3456666666 99996544333321 2222 2233555566777777765 56 6666653 2 355565555
Q ss_pred HHHHHHHhCCCEEEeCCC
Q 016682 176 AVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg 193 (384)
|.. ++++|||+|.+-+.
T Consensus 231 a~~-l~~~Gadgi~~~nt 247 (344)
T PRK05286 231 ADL-ALEHGIDGVIATNT 247 (344)
T ss_pred HHH-HHHhCCcEEEEeCC
Confidence 544 45799999999875
No 303
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.65 E-value=2.2 Score=43.98 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=60.8
Q ss_pred HHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcc----cC--CCc
Q 016682 83 HLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG----AK--RPL 155 (384)
Q Consensus 83 ~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rg----a~--~~~ 155 (384)
+|.++++ -+-|+++=.+.++..|+.+.++|+|.|.+|-..+...-+ .....+++.+.+..+.+.++- .. .-.
T Consensus 179 ~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~-~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vp 257 (369)
T TIGR01304 179 NLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL-VLGIEVPMATAIADVAAARRDYLDETGGRYVH 257 (369)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc-ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 3444333 345655437999999998888999999966444332111 111245666666656555441 11 234
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|++| |+. .+..+. .+.+ ..|||+|.+
T Consensus 258 VIAd---GGI-~tg~di----~kAl-AlGAdaV~i 283 (369)
T TIGR01304 258 VIAD---GGI-ETSGDL----VKAI-ACGADAVVL 283 (369)
T ss_pred EEEe---CCC-CCHHHH----HHHH-HcCCCEeee
Confidence 8899 677 467776 3567 589999999
No 304
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.60 E-value=7.4 Score=39.61 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=71.6
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEecchhh----hhhccCCCCcCCCHHHHHHHHHHHH---cccCCCcEEEeCCCCC
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLLVGDLPFGT 164 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~----mv~lG~~dT~~VtldeMl~h~raV~---Rga~~~~vvaDmPfgs 164 (384)
..++++.-.+..-...+.++|+|.|-+-.+.+ ...+| .|.+|++..+.... +... ..+..+.+..+
T Consensus 65 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g-~~v~~~~ed~~ 137 (365)
T TIGR02660 65 ARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRG-LFVSVGGEDAS 137 (365)
T ss_pred cEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCC-CEEEEeecCCC
Confidence 45555554556666777889999985444432 22333 34566554333221 1122 23567888755
Q ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 165 YESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 165 Y~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
. .+++..++.+.++. +.|++.|.|-|-. .++.+.|+.+.+. ++|+--|
T Consensus 138 r-~~~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~l~~H 191 (365)
T TIGR02660 138 R-ADPDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRALRQAVDLPLEMH 191 (365)
T ss_pred C-CCHHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5 68888888777766 7999999999842 5667778888764 6776666
No 305
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=91.57 E-value=1.9 Score=47.88 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCCC---------c---------------------cchHHHHHHHHHcCCceeeeccCCccc
Q 016682 172 AVDTAVRILKEGGMDAIKLEGG---------S---------------------PSRITAARGIVEAGIAVMGHVGLTPQA 221 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg---------~---------------------~e~~~~I~alv~aGIPV~gHiGLtPQ~ 221 (384)
..+.|.|. +++|.|+|-|-++ + .|+++.|+..+..++||.-- |.+.
T Consensus 553 f~~aA~~a-~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~r--i~~~- 628 (765)
T PRK08255 553 FVAAARRA-AEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVR--ISAH- 628 (765)
T ss_pred HHHHHHHH-HHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEE--Eccc-
Confidence 34445554 5799999999765 1 23444444444345666543 2221
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC--------------CCHHHHHHHHhhcCCCEEEEcCCCCCC
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC--------------VPPPVAAAATSALQIPTIGIGAGPFCS 287 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~--------------Vp~ela~~It~~l~IPtIGIGAG~~cD 287 (384)
+|.-.|-+. ++.++-++.++++|+|.|-+-. ...+.+++|.+.+++|+|+- |.-.|
T Consensus 629 -----~~~~~g~~~---~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~--G~i~~ 698 (765)
T PRK08255 629 -----DWVEGGNTP---DDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAV--GAISE 698 (765)
T ss_pred -----cccCCCCCH---HHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEe--CCCCC
Confidence 222224443 4567788889999999998741 12567788999999998764 44444
Q ss_pred c
Q 016682 288 G 288 (384)
Q Consensus 288 G 288 (384)
.
T Consensus 699 ~ 699 (765)
T PRK08255 699 A 699 (765)
T ss_pred H
Confidence 3
No 306
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.53 E-value=2.7 Score=43.99 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=42.0
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE-EEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v-vaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
.-.+..+-++|+|+|.+ |+. +|+ +.++.+++. .+++-.|..+| ++|.- |.+++ .+++
T Consensus 155 ~~~v~~lv~aGvDvI~i-D~a----~g~----~~~~~~~v~---~ik~~~p~~~vi~g~V~------T~e~a----~~l~ 212 (404)
T PRK06843 155 IERVEELVKAHVDILVI-DSA----HGH----STRIIELVK---KIKTKYPNLDLIAGNIV------TKEAA----LDLI 212 (404)
T ss_pred HHHHHHHHhcCCCEEEE-ECC----CCC----ChhHHHHHH---HHHhhCCCCcEEEEecC------CHHHH----HHHH
Confidence 46778888999999986 333 133 344555554 44455554434 45753 45566 4566
Q ss_pred HHhCCCEEEe
Q 016682 181 KEGGMDAIKL 190 (384)
Q Consensus 181 keaGAdaVKL 190 (384)
++|||+|++
T Consensus 213 -~aGaD~I~v 221 (404)
T PRK06843 213 -SVGADCLKV 221 (404)
T ss_pred -HcCCCEEEE
Confidence 689999997
No 307
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.49 E-value=16 Score=36.42 Aligned_cols=219 Identities=14% Similarity=0.129 Sum_probs=127.3
Q ss_pred CCHHHH-HHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC
Q 016682 79 VTLTHL-RQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 79 ~t~~~l-r~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~ 153 (384)
+|+.++ +..++++--+-..|+||+.+++. +|+.+.++|+--.....-. ..++.+...++..++.++.
T Consensus 4 v~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~--------~g~~~~~~~~~~~a~~~~V 75 (284)
T PRK12737 4 ISTKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSY--------AGTDYIVAIAEVAARKYNI 75 (284)
T ss_pred CcHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhh--------CCHHHHHHHHHHHHHHCCC
Confidence 455554 44556777899999999999874 5778999998322221121 2345566777888888877
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHH----HHHHcCCceeeeccCCcccccccC
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAAR----GIVEAGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~----alv~aGIPV~gHiGLtPQ~~~~lg 226 (384)
| |+.-+.-|. +.+.. .+.+ ++|...|.+-|.. +|-....+ .+...|+.|=|=||-.+-...-..
T Consensus 76 P-ValHLDH~~---~~e~i----~~ai-~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~ 146 (284)
T PRK12737 76 P-LALHLDHHE---DLDDI----KKKV-RAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLV 146 (284)
T ss_pred C-EEEECCCCC---CHHHH----HHHH-HcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcc
Confidence 7 777766522 44433 5677 5899999997763 33343344 444589999665554431111000
Q ss_pred -Cc-cccCCCHHHHHHHHHHHHHHHHcCCcEEEec------------CCCHHHHHHHHhhcCCCEEEEcCCCCC-Cchhh
Q 016682 227 -GF-RPQGKNVTSAVKVVETALALQEVGCFSVVLE------------CVPPPVAAAATSALQIPTIGIGAGPFC-SGQVL 291 (384)
Q Consensus 227 -Gf-rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE------------~Vp~ela~~It~~l~IPtIGIGAG~~c-DGQvL 291 (384)
+- ...=-+.++|.+.+++ -|+|+|=+= -+.-++.++|.+.+++|+ .+-.|+++ |=|+.
T Consensus 147 ~~~~~~~~T~peeA~~Fv~~------TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPL-VlHGgSG~~~e~~~ 219 (284)
T PRK12737 147 VDEKDAMYTNPDAAAEFVER------TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPL-VLHGASGVPDEDVK 219 (284)
T ss_pred cccccccCCCHHHHHHHHHH------hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCE-EEeCCCCCCHHHHH
Confidence 00 0001244566655554 698877532 234688999999999997 46445443 22221
Q ss_pred hHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 292 VYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 292 V~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
=. =-+|.. | +.-+-++.....+++++|..+
T Consensus 220 ka-i~~Gi~----------K-iNi~T~l~~a~~~~~~~~~~~ 249 (284)
T PRK12737 220 KA-ISLGIC----------K-VNVATELKIAFSDAVKKYFYE 249 (284)
T ss_pred HH-HHCCCe----------E-EEeCcHHHHHHHHHHHHHHHh
Confidence 11 112333 1 223345555566777777654
No 308
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=91.41 E-value=3.2 Score=40.77 Aligned_cols=168 Identities=24% Similarity=0.295 Sum_probs=86.4
Q ss_pred HcCCCEEEecchhhh-----hhccCCCCcCCCHHHHHHHHHHHHccc-C------CCcEEEeCC-CC----------CCc
Q 016682 110 SAGIDICLVGDSAAM-----VVHGHDTTLPITLEEMLVHCRAVARGA-K------RPLLVGDLP-FG----------TYE 166 (384)
Q Consensus 110 ~AGiD~IlVGDSl~m-----v~lG~~dT~~VtldeMl~h~raV~Rga-~------~~~vvaDmP-fg----------sY~ 166 (384)
+||.|+|.+- +..+ .-+|+++. .+.++...+-.++|.+ + +.+|.++++ +| .|.
T Consensus 52 ~AGAdiI~Tn-Ty~a~~~~l~~~g~~~~---~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiGP~ga~l~g~~y~~~~~ 127 (305)
T PF02574_consen 52 EAGADIITTN-TYQASRERLKEYGLSDE---EAEELNRAAVELAREAADEYGSGRKVLVAGSIGPYGAYLSGSEYPGDYG 127 (305)
T ss_dssp HHT-SEEEEC--TT-SHHHHGGGT-GGG---CHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE--S--------CTTCT
T ss_pred HCCCCeEEec-CCcCchhhhhhcCCcHH---HHHHHHHHHHHHHHHHHhhccCCCccEEEEEcccccccchhhhcccccc
Confidence 6899988754 2222 22355443 3556654433333221 1 367888886 33 454
Q ss_pred CCHHHHHHHH---HHHHHHhCCCEEEeCCC--ccchHHHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHH
Q 016682 167 SSTNQAVDTA---VRILKEGGMDAIKLEGG--SPSRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVK 240 (384)
Q Consensus 167 ~s~e~av~nA---~rl~keaGAdaVKLEgg--~~e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ 240 (384)
.+.+++.+.= .+.+.++|+|.+-+|=- ..|....++++.+ .+.|+...+=+.+ +|...-|.+..++.+
T Consensus 128 ~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~~is~~~~~------~~~l~~g~~~~~~~~ 201 (305)
T PF02574_consen 128 LSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPVWISFSCKD------SGRLRDGTSLEDAVQ 201 (305)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCSSEEE-EEE------EES-TCTTBCTTSHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhceeccchhh------hccccCCCCHHHHHH
Confidence 4555443322 34455789999999943 2677777888887 6777764322221 122223444334444
Q ss_pred HHHHH-HHHHHcCCcEEEecCCC-HHHHHHHHhh---c-CCCEEEEc-CCCCCCc
Q 016682 241 VVETA-LALQEVGCFSVVLECVP-PPVAAAATSA---L-QIPTIGIG-AGPFCSG 288 (384)
Q Consensus 241 ll~rA-kAleeAGAf~IvlE~Vp-~ela~~It~~---l-~IPtIGIG-AG~~cDG 288 (384)
.++.+ ..+ +.|+++|=+-|.. +.+...+.+. . .+|++-.- +|...|.
T Consensus 202 ~~~~~~~~~-~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~~~~~ 255 (305)
T PF02574_consen 202 VIDELLRAL-PPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSGEPYDV 255 (305)
T ss_dssp HHHHHHHHH-CTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS-TTS
T ss_pred HHHHHHHHh-hhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCCCCccc
Confidence 44444 344 8999999999994 4444443332 2 67887663 4433333
No 309
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.40 E-value=1.4 Score=43.09 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=71.0
Q ss_pred HHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHc
Q 016682 177 VRILKEGGMDAIKLEGGS-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA 251 (384)
.+..++-|.++|-|.+|+ ++....|+.+.+.|..|.--+|....... ..-...+.++.++..-+|
T Consensus 77 l~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~----------~~~~~~~~i~~~~~~LeA 146 (237)
T TIGR03849 77 LNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKD----------SELTPDDRIKLINKDLEA 146 (237)
T ss_pred HHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCccc----------ccCCHHHHHHHHHHHHHC
Confidence 347788999999999995 56778899999999988876665331100 011246889999999999
Q ss_pred CCcEEEecC---------------CCHHHHHHHHhhcCCCEEEEcCC
Q 016682 252 GCFSVVLEC---------------VPPPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 252 GAf~IvlE~---------------Vp~ela~~It~~l~IPtIGIGAG 283 (384)
||+.|.+|+ +-.+++..|.++++.=-+-+=|.
T Consensus 147 GA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp 193 (237)
T TIGR03849 147 GADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAP 193 (237)
T ss_pred CCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECC
Confidence 999999999 34677777777766544545443
No 310
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=91.38 E-value=4.1 Score=41.46 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=79.9
Q ss_pred hccCCCCcCCCHHHHHHHHHHHH-cccCCCcEEEe-------CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccch
Q 016682 126 VHGHDTTLPITLEEMLVHCRAVA-RGAKRPLLVGD-------LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSR 197 (384)
Q Consensus 126 ~lG~~dT~~VtldeMl~h~raV~-Rga~~~~vvaD-------mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~ 197 (384)
.-++|..-..+++.++.+++... .|.+ .+++.- -++|+...+++..+..|+|.+|+.=-+.+-+-|=. .
T Consensus 42 I~smPg~~r~s~d~l~~~v~~~~~~Gi~-~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVc--l 118 (320)
T cd04823 42 IPSMPGVFRLSIDELLKEAEEAVDLGIP-AVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVA--L 118 (320)
T ss_pred cCCCCCceeeCHHHHHHHHHHHHHcCCC-EEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeee--c
Confidence 34556666666666666555433 3333 222211 12344444555555555666654423433333210 0
Q ss_pred HHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc---
Q 016682 198 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL--- 273 (384)
Q Consensus 198 ~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l--- 273 (384)
++ ----||.|+.-. |+ + .+++..+.+.+.|..+.+||||+|=.-.. .-.+ ..|.+.|
T Consensus 119 c~---------YT~hGHcGil~~-----~~--i--dND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV-~aIR~aLd~~ 179 (320)
T cd04823 119 DP---------YTSHGHDGIVRD-----GG--I--LNDETVEVLCKQALVQAEAGADIVAPSDMMDGRI-GAIREALDAE 179 (320)
T ss_pred cC---------CCCCCcceeccC-----Cc--C--cCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHH-HHHHHHHHHC
Confidence 00 112366665520 11 1 25667788999999999999998876544 4333 5555554
Q ss_pred ---CCCEEEEcCCCCCCchhhhHhhhhcCC
Q 016682 274 ---QIPTIGIGAGPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 274 ---~IPtIGIGAG~~cDGQvLV~~DlLG~~ 300 (384)
++|+++.- ..+++.=.==+-|.+|-.
T Consensus 180 g~~~v~ImSYs-aKyaS~fYGPFRdAa~Sa 208 (320)
T cd04823 180 GFTNVSILSYA-AKYASAFYGPFRDALGSA 208 (320)
T ss_pred CCCCCceeech-HHhhhhccchhHHHhcCC
Confidence 57777663 344444443445666654
No 311
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=91.37 E-value=0.86 Score=45.03 Aligned_cols=86 Identities=28% Similarity=0.399 Sum_probs=51.8
Q ss_pred HHHHHhCCCEEEeCCCc---------------cchHHHHHHHHHcCCc---eeeeccCCcccccccCCccccCCCHHHHH
Q 016682 178 RILKEGGMDAIKLEGGS---------------PSRITAARGIVEAGIA---VMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~---------------~e~~~~I~alv~aGIP---V~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
+++.++|+|.|-+-|.. ++|.-..++.++ |.| |++- .| ++-| | .+ .+
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R-ga~~~~vv~D---mP-----f~sy--~-~s---~e 94 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR-GAPNAFVVAD---MP-----FGSY--Q-AS---PE 94 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH-H-TSSEEEEE----------TTSS--T-SS---HH
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh-cCCCceEEec---CC-----cccc--c-CC---HH
Confidence 77889999999887651 556655555554 222 2211 12 2222 1 23 34
Q ss_pred HHHHHHHHHHH-cCCcEEEecCCC--HHHHHHHHhhcCCCEEE
Q 016682 240 KVVETALALQE-VGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (384)
Q Consensus 240 ~ll~rAkAlee-AGAf~IvlE~Vp--~ela~~It~~l~IPtIG 279 (384)
+.++-|..+-+ +||++|-+|+-. .++++.|+++ +||++|
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~-GIPV~g 136 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDA-GIPVMG 136 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHT-T--EEE
T ss_pred HHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHC-CCcEEE
Confidence 56667766655 999999999875 7889999885 999996
No 312
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.34 E-value=11 Score=34.26 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=71.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
.+.+.++|+|.|-+... |.....+.+.+...+.+++..+.++++.| | .++..+.|
T Consensus 27 ~~~~~~~gv~~v~lr~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~-----------~~~a~~~g 81 (212)
T PRK00043 27 VEAALEGGVTLVQLREK---------GLDTRERLELARALKELCRRYGVPLIVND-----R-----------VDLALAVG 81 (212)
T ss_pred HHHHHhcCCCEEEEeCC---------CCCHHHHHHHHHHHHHHHHHhCCeEEEeC-----h-----------HHHHHHcC
Confidence 34466779999865311 11122222334444555555555555431 1 13344689
Q ss_pred CCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-C-
Q 016682 185 MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-P- 262 (384)
Q Consensus 185 AdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-p- 262 (384)
+++|.+... ......++.+...++.+ | . .-.|.+ +++...+.|+|.|.+-.+ |
T Consensus 82 ad~vh~~~~-~~~~~~~~~~~~~~~~~----g-----------~--~~~t~~-------e~~~a~~~gaD~v~~~~~~~~ 136 (212)
T PRK00043 82 ADGVHLGQD-DLPVADARALLGPDAII----G-----------L--STHTLE-------EAAAALAAGADYVGVGPIFPT 136 (212)
T ss_pred CCEEecCcc-cCCHHHHHHHcCCCCEE----E-----------E--eCCCHH-------HHHHHhHcCCCEEEECCccCC
Confidence 999999654 32234444444444322 1 0 112322 344555789999986322 1
Q ss_pred -----------HHHHHHHHhhcC-CCEEEEcCC
Q 016682 263 -----------PPVAAAATSALQ-IPTIGIGAG 283 (384)
Q Consensus 263 -----------~ela~~It~~l~-IPtIGIGAG 283 (384)
.+..+.+.+.++ +|++.+|.=
T Consensus 137 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI 169 (212)
T PRK00043 137 PTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI 169 (212)
T ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc
Confidence 467888888888 999988743
No 313
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=91.28 E-value=15 Score=35.78 Aligned_cols=176 Identities=14% Similarity=0.042 Sum_probs=102.2
Q ss_pred CCcEEEEecCChHHHHHH------HHcCCC--EEEecchhhhhhccCCCC--cCCCHHHHHHHHHHHHcccCC-CcEEEe
Q 016682 91 GEPITMVTAYDYPSAVHL------DSAGID--ICLVGDSAAMVVHGHDTT--LPITLEEMLVHCRAVARGAKR-PLLVGD 159 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~ia------e~AGiD--~IlVGDSl~mv~lG~~dT--~~VtldeMl~h~raV~Rga~~-~~vvaD 159 (384)
=++|.-+||.|.....+. .++|++ ++++||.... |.++. ..-.--+++... ++..+. .+-++-
T Consensus 59 ~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~---~~~~~~~~f~~a~~Li~~i---~~~~~~f~ig~a~ 132 (272)
T TIGR00676 59 IPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPKG---EGTPTPGGFNYASELVEFI---RNEFGDFDIGVAA 132 (272)
T ss_pred CCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CCCCCCCCCCCHHHHHHHH---HHhcCCeeEEEEe
Confidence 378999999998766554 478999 5579998753 32111 111333444443 332222 222377
Q ss_pred CCCCCCcCC-HHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCc-cccc----c--cCCcc
Q 016682 160 LPFGTYESS-TNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTP-QAIS----V--LGGFR 229 (384)
Q Consensus 160 mPfgsY~~s-~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtP-Q~~~----~--lgGfr 229 (384)
-|+|..+.. .++-++.-.+=+ ++||+-+---=-. +...+.++.+.++||.+--+.|+.| .+.. . +-|..
T Consensus 133 ~Peghp~~~~~~~~~~~L~~K~-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~ 211 (272)
T TIGR00676 133 YPEKHPEAPNLEEDIENLKRKV-DAGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAE 211 (272)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-HcCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCC
Confidence 788766542 333334333334 6899866543110 3344556667778887778899998 1111 1 22322
Q ss_pred cc---------CCCH-H-----HHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhc
Q 016682 230 PQ---------GKNV-T-----SAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSAL 273 (384)
Q Consensus 230 vq---------Grt~-~-----~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l 273 (384)
+- .+++ + ..+-.++-++.+.+.|+++|-+=.+- ++.+.+|.+++
T Consensus 212 vP~~~~~~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~~~~~~il~~l 271 (272)
T TIGR00676 212 IPAWLVKRLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRADATLEICENL 271 (272)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHhh
Confidence 21 1221 1 12346666778888899999988884 88888888765
No 314
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.28 E-value=8.2 Score=38.71 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHhhhC-CCc-EEEEecCCh----HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCH-HHHHHHHHHHHcccCCC
Q 016682 82 THLRQKHKN-GEP-ITMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL-EEMLVHCRAVARGAKRP 154 (384)
Q Consensus 82 ~~lr~~k~~-g~~-I~mlTAyD~----~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~Vtl-deMl~h~raV~Rga~~~ 154 (384)
..+++.++. +.| |+-++..|. --|+.++++|+|.|=+-=|--.. -++-....+ +.+...+++|++.++.|
T Consensus 89 ~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~---~~~~~g~~~~~~~~eiv~~v~~~~~iP 165 (325)
T cd04739 89 ELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT---DPDISGAEVEQRYLDILRAVKSAVTIP 165 (325)
T ss_pred HHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC---CCCcccchHHHHHHHHHHHHHhccCCC
Confidence 344444332 333 344555555 35778889999999433221000 011111122 33457788898888877
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
|++=+. ..+ .+..+. .+.++++|||+|-+-+.
T Consensus 166 -v~vKl~-p~~-~~~~~~----a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 166 -VAVKLS-PFF-SALAHM----AKQLDAAGADGLVLFNR 197 (325)
T ss_pred -EEEEcC-CCc-cCHHHH----HHHHHHcCCCeEEEEcC
Confidence 555554 123 233333 34455899999988764
No 315
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=91.27 E-value=1.7 Score=39.50 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=72.5
Q ss_pred HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 016682 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (384)
Q Consensus 110 ~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVK 189 (384)
++|++.|..-+- +...-.+.+.+.....+++....++++-| ++ .+..+.|+++|+
T Consensus 23 ~~gv~~v~lR~k---------~~~~~~~~~~a~~l~~~~~~~~~~liin~--------~~--------~la~~~~~dGvH 77 (180)
T PF02581_consen 23 AAGVDLVQLREK---------DLSDEELLELARRLAELCQKYGVPLIIND--------RV--------DLALELGADGVH 77 (180)
T ss_dssp HTT-SEEEEE-S---------SS-HHHHHHHHHHHHHHHHHTTGCEEEES---------H--------HHHHHCT-SEEE
T ss_pred HCCCcEEEEcCC---------CCCccHHHHHHHHHHHHhhcceEEEEecC--------CH--------HHHHhcCCCEEE
Confidence 457777765432 21222344445555666776677877766 12 233468999999
Q ss_pred eCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC--------
Q 016682 190 LEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-------- 261 (384)
Q Consensus 190 LEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-------- 261 (384)
|... ......++.+...+ +..|.+... .++++..++.|+|.+++-.|
T Consensus 78 l~~~-~~~~~~~r~~~~~~--------------------~~ig~S~h~----~~e~~~a~~~g~dYv~~gpvf~T~sk~~ 132 (180)
T PF02581_consen 78 LGQS-DLPPAEARKLLGPD--------------------KIIGASCHS----LEEAREAEELGADYVFLGPVFPTSSKPG 132 (180)
T ss_dssp EBTT-SSSHHHHHHHHTTT--------------------SEEEEEESS----HHHHHHHHHCTTSEEEEETSS--SSSSS
T ss_pred eccc-ccchHHhhhhcccc--------------------eEEEeecCc----HHHHHHhhhcCCCEEEECCccCCCCCcc
Confidence 9765 33333344443222 223322212 22355666999999998776
Q ss_pred ----CHHHHHHHHhhcCCCEEEEcC
Q 016682 262 ----PPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 262 ----p~ela~~It~~l~IPtIGIGA 282 (384)
.-+..+++.+.+++|++.||.
T Consensus 133 ~~~~g~~~l~~~~~~~~~pv~AlGG 157 (180)
T PF02581_consen 133 APPLGLDGLREIARASPIPVYALGG 157 (180)
T ss_dssp -TTCHHHHHHHHHHHTSSCEEEESS
T ss_pred ccccCHHHHHHHHHhCCCCEEEEcC
Confidence 156778889999999999994
No 316
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=91.21 E-value=11 Score=34.16 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEec--chhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 103 PSAVHLDSAGIDICLVG--DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 103 ~sA~iae~AGiD~IlVG--DSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
..++.++++|+|.|=.+ |.. -.+ +..+++ ..++.+++-.+.+ +.+|+ +.| ++++- .+.+
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~-----~~~-~~~~~~----~~v~~i~~~~~~~-v~v~l--m~~--~~~~~----~~~~ 75 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGH-----FVP-NLTFGP----PVLEALRKYTDLP-IDVHL--MVE--NPDRY----IEDF 75 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCC-----CCC-CcccCH----HHHHHHHhcCCCc-EEEEe--eeC--CHHHH----HHHH
Confidence 35677889999999654 211 111 223554 3446676544444 44665 356 34444 3455
Q ss_pred HHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 181 KEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 181 keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
.+.|+|+|.+=++. ++....++.+...|+.+.
T Consensus 76 ~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 76 AEAGADIITVHPEASEHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred HHcCCCEEEEccCCchhHHHHHHHHHHcCCcEE
Confidence 58999997776552 455667777777887653
No 317
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=91.21 E-value=19 Score=36.71 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=111.5
Q ss_pred CCCHHHHH-HhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc
Q 016682 78 RVTLTHLR-QKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 78 ~~t~~~lr-~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga 151 (384)
-+++.++. ..++++--+-..|+|+..+++. +|+.+.++|+ +..+. ....|.. .+..|...++..++.+
T Consensus 9 lv~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~-~~~~g~~-----~~~~~~~~~~~~a~~a 82 (321)
T PRK07084 9 LVNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGA-RKYANAT-----LLRYMAQGAVEYAKEL 82 (321)
T ss_pred ccCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhH-HhhCCch-----HHHHHHHHHHHHHHHc
Confidence 35665554 4556777889999999999975 5677999998 44332 2212211 1455665556655544
Q ss_pred --CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchH----HHHHHHHHcCCceeeeccCCcccc
Q 016682 152 --KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRI----TAARGIVEAGIAVMGHVGLTPQAI 222 (384)
Q Consensus 152 --~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~----~~I~alv~aGIPV~gHiGLtPQ~~ 222 (384)
+.| |+.-+.-| .+.+.. .+.+ ++|...|.+-|.. +|-. +.++.+...|+.|=|=||-.....
T Consensus 83 ~~~VP-V~lHLDHg---~~~e~i----~~ai-~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e 153 (321)
T PRK07084 83 GCPIP-IVLHLDHG---DSFELC----KDCI-DSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE 153 (321)
T ss_pred CCCCc-EEEECCCC---CCHHHH----HHHH-HcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 455 66666652 245543 5677 5899999997763 3333 344444468999987777554221
Q ss_pred cccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe-----------------cCCCHHHHHHHHhhc-CCCEEEEcCCC
Q 016682 223 SVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL-----------------ECVPPPVAAAATSAL-QIPTIGIGAGP 284 (384)
Q Consensus 223 ~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl-----------------E~Vp~ela~~It~~l-~IPtIGIGAG~ 284 (384)
.-..+-...=-+.++|.+.+++ -|+|+|=+ +-+.-++.++|.+.+ ++|+ .+-.|+
T Consensus 154 d~~~~~~~~~T~peeA~~Fv~~------TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPL-VLHGgS 226 (321)
T PRK07084 154 DEVSAEHHTYTQPEEVEDFVKK------TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPI-VLHGSS 226 (321)
T ss_pred CCccCcccccCCHHHHHHHHHH------hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCE-EEeCCC
Confidence 1100000001134555554443 58887642 124468899999999 6996 465555
Q ss_pred CCC
Q 016682 285 FCS 287 (384)
Q Consensus 285 ~cD 287 (384)
+++
T Consensus 227 g~~ 229 (321)
T PRK07084 227 SVP 229 (321)
T ss_pred CCc
Confidence 543
No 318
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=91.19 E-value=3.2 Score=42.29 Aligned_cols=93 Identities=25% Similarity=0.313 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc------CCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCC
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL------QIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHA 306 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l------~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~ 306 (384)
+++..+.+.+.|..+.+||||+|-.-.. +-.+ ..|.+.| ++|+++.-+ .+++.=.==+-|.+|-.
T Consensus 142 ND~Tl~~Lak~Al~~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~~~v~ImSYsa-KyaS~fYGPFRdAa~Sa------ 213 (324)
T PF00490_consen 142 NDETLERLAKQALSHAEAGADIVAPSDMMDGRV-GAIREALDEAGFSDVPIMSYSA-KYASAFYGPFRDAAGSA------ 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEE-S--TTHH-HHHHHHHHHTTCTTSEEEEEEE-EB-SSTGHHHHHHHT-H------
T ss_pred cHHHHHHHHHHHHHHHHhCCCeeccccccCCHH-HHHHHHHHhCCCCCccEEechH-HHhhhhhHhHHHHhcCC------
Confidence 4556678889999999999998887644 5333 4444443 688887743 46666555566777754
Q ss_pred CCCcch--hhhhh-hhHHHHHHHHHHHHHHhccCC
Q 016682 307 KVTPKF--CKQFA-RVGDVINKALLEYKEEVTNGS 338 (384)
Q Consensus 307 ~~~PkF--vk~y~-~~~~~~~~A~~~y~~eV~~g~ 338 (384)
|+| -|.|. |.. ...+|+++-..|+.+|.
T Consensus 214 ---p~fgDrktYQmdp~-N~~EAlre~~~D~~EGA 244 (324)
T PF00490_consen 214 ---PKFGDRKTYQMDPA-NRREALREAELDIEEGA 244 (324)
T ss_dssp ---HSSSTSTTTSB-TT--HHHHHHHHHHHHHTT-
T ss_pred ---ccccCcccccCCCc-cHHHHHHHhhhhHhhCC
Confidence 332 25553 332 34566666666777663
No 319
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=91.15 E-value=8 Score=37.87 Aligned_cols=165 Identities=17% Similarity=0.148 Sum_probs=93.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHH--HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSA--VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA--~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
|-+.|++..+.+. ||..-. +-..++|+|+|=||-. .+..-..+.|....+.|....+.| |+
T Consensus 11 ~~~~~~~~~~~~d-------~~~i~~~A~~~~~~GAdiIDVg~~---------~~~~eE~~r~~~~v~~l~~~~~~p-ls 73 (261)
T PRK07535 11 TRKSIAEAIEAKD-------AAFIQKLALKQAEAGADYLDVNAG---------TAVEEEPETMEWLVETVQEVVDVP-LC 73 (261)
T ss_pred hhHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCEEEECCC---------CCchhHHHHHHHHHHHHHHhCCCC-EE
Confidence 4455666655543 333333 3345789999987732 122344667888888887666666 78
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccc-hHHHHHHHHHcCCceee-ec---cCCcccccccCCccccC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPS-RITAARGIVEAGIAVMG-HV---GLTPQAISVLGGFRPQG 232 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e-~~~~I~alv~aGIPV~g-Hi---GLtPQ~~~~lgGfrvqG 232 (384)
.|.+. + ++++.|.+.++ |++.||==-+..+ ....+..+.+.|.||+. |. | +|
T Consensus 74 IDT~~------~-~v~eaaL~~~~--G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P------------- 130 (261)
T PRK07535 74 IDSPN------P-AAIEAGLKVAK--GPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IP------------- 130 (261)
T ss_pred EeCCC------H-HHHHHHHHhCC--CCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCC-CC-------------
Confidence 88542 2 45565555553 8888874333121 23445556678999986 42 2 22
Q ss_pred CCHH-HHHHHHHHHHHHHHcCC---cEEEecCC-C-----------HHHHHHHHhhc-CCCEEEEcCCCC
Q 016682 233 KNVT-SAVKVVETALALQEVGC---FSVVLECV-P-----------PPVAAAATSAL-QIPTIGIGAGPF 285 (384)
Q Consensus 233 rt~~-~a~~ll~rAkAleeAGA---f~IvlE~V-p-----------~ela~~It~~l-~IPtIGIGAG~~ 285 (384)
+|.+ ..+.+.+....++++|. +.++=+++ | -+.++.+.+.. +.||. +|.++-
T Consensus 131 ~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l-~G~Sn~ 199 (261)
T PRK07535 131 KDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTT-CGLSNI 199 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEE-EEeCCC
Confidence 2222 22334444556779999 44443333 2 12345555656 68865 555544
No 320
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=91.13 E-value=9.7 Score=34.50 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=69.0
Q ss_pred HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 016682 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (384)
Q Consensus 110 ~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVK 189 (384)
+.|+++|..-+ ++-..-.+.+++...+.+++....+|++-| . .++..+.|+++|+
T Consensus 24 ~~g~~~v~lR~---------~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~--------~--------~~la~~~g~~GvH 78 (196)
T TIGR00693 24 KGGVTLVQLRD---------KGSNTRERLALAEKLQELCRRYGVPFIVND--------R--------VDLALALGADGVH 78 (196)
T ss_pred hcCCCEEEEec---------CCCCHHHHHHHHHHHHHHHHHhCCeEEEEC--------H--------HHHHHHcCCCEEe
Confidence 56888875532 111122344566666777766667777754 1 1344468999999
Q ss_pred eCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC--------
Q 016682 190 LEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-------- 261 (384)
Q Consensus 190 LEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-------- 261 (384)
|..+ .-....++.+...+. ..|.+....+ ++....+.|++.|.+-.+
T Consensus 79 l~~~-~~~~~~~r~~~~~~~--------------------~ig~s~h~~~----e~~~a~~~g~dyi~~~~v~~t~~k~~ 133 (196)
T TIGR00693 79 LGQD-DLPASEARALLGPDK--------------------IIGVSTHNLE----ELAEAEAEGADYIGFGPIFPTPTKKD 133 (196)
T ss_pred cCcc-cCCHHHHHHhcCCCC--------------------EEEEeCCCHH----HHHHHhHcCCCEEEECCccCCCCCCC
Confidence 9654 222333444432221 1222221222 233455689999986221
Q ss_pred -----CHHHHHHHHhhc-CCCEEEEcCC
Q 016682 262 -----PPPVAAAATSAL-QIPTIGIGAG 283 (384)
Q Consensus 262 -----p~ela~~It~~l-~IPtIGIGAG 283 (384)
..+..+.+.+.. ++|++.+|.=
T Consensus 134 ~~~~~g~~~l~~~~~~~~~~pv~a~GGI 161 (196)
T TIGR00693 134 PAPPAGVELLREIAATSIDIPIVAIGGI 161 (196)
T ss_pred CCCCCCHHHHHHHHHhcCCCCEEEECCc
Confidence 256778887766 4999988743
No 321
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.13 E-value=11 Score=37.68 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=50.7
Q ss_pred EEEEecCCh----HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHH-HHHHHHHHHcccCCCcEEEeCCCCCCcCC
Q 016682 94 ITMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEE-MLVHCRAVARGAKRPLLVGDLPFGTYESS 168 (384)
Q Consensus 94 I~mlTAyD~----~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~Vtlde-Ml~h~raV~Rga~~~~vvaDmPfgsY~~s 168 (384)
|+-+..++. -.|+.++++|+|+|-+--|... +.++...-+..+ +...+++|++.++.| |++=+.- .+ .+
T Consensus 105 i~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp---~~~~~~g~~~~~~~~eil~~v~~~~~iP-V~vKl~p-~~-~~ 178 (334)
T PRK07565 105 IASLNGSSAGGWVDYARQIEQAGADALELNIYYLP---TDPDISGAEVEQRYLDILRAVKSAVSIP-VAVKLSP-YF-SN 178 (334)
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---CCCCCccccHHHHHHHHHHHHHhccCCc-EEEEeCC-Cc-hh
Confidence 444455554 4577888999999954322100 111111122333 457778888888888 5555431 22 12
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 169 TNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 169 ~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
..+. .+.++++|+|+|-+-+.
T Consensus 179 ~~~~----a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 179 LANM----AKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHH----HHHHHHcCCCeEEEECC
Confidence 2222 35566899999987543
No 322
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=91.12 E-value=5.5 Score=37.34 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=80.8
Q ss_pred HHHHHhhhCCCcEEEEec--CChHH-----HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc-CC
Q 016682 82 THLRQKHKNGEPITMVTA--YDYPS-----AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA-KR 153 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTA--yD~~s-----A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga-~~ 153 (384)
..++.+++.+. .+++-. +|.+. ++.+-++|+|++.|= ++.. .+|+..+....+.. +.
T Consensus 40 ~~v~~l~~~~~-~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh--------~~~g------~~~l~~~~~~~~~~~~~ 104 (213)
T TIGR01740 40 KIIDELAKLNK-LIFLDLKFADIPNTVKLQYESKIKQGADMVNVH--------GVAG------SESVEAAKEAASEGGRG 104 (213)
T ss_pred HHHHHHHHcCC-CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEc--------CCCC------HHHHHHHHHHhhcCCCe
Confidence 34555555543 455555 88764 444678999999763 1111 24444333332222 23
Q ss_pred CcEEEeCCCC-C--CcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccc
Q 016682 154 PLLVGDLPFG-T--YESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRP 230 (384)
Q Consensus 154 ~~vvaDmPfg-s--Y~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrv 230 (384)
.|+++.|=-. + ++.+..+.+..-.+..++.|.+++-. + .+....||.+.. +... ..+|.+.
T Consensus 105 v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~--~-~~~~~~ir~~~~-~~~~------------vtPGI~~ 168 (213)
T TIGR01740 105 LLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVC--S-AEEAKEIRKFTG-DFLI------------LTPGIRL 168 (213)
T ss_pred EEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEe--C-HHHHHHHHHhcC-CceE------------EeCCcCC
Confidence 4777877532 1 23345455554455566778888753 2 455666776653 3222 3558888
Q ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 231 QGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 231 qGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
||-+..+ .+-+--.+.+.++||+.+++=
T Consensus 169 ~g~~~~d-q~~~~~~~~~~~~Gad~iVvG 196 (213)
T TIGR01740 169 QSKGADD-QQRVVTLEDAKEAGADVIIVG 196 (213)
T ss_pred CCCCcCC-ccccCCHHHHHHcCCCEEEEC
Confidence 8743221 122334567789999988763
No 323
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=91.09 E-value=10 Score=44.92 Aligned_cols=178 Identities=20% Similarity=0.205 Sum_probs=96.4
Q ss_pred HHHHHHhCCCEEEeCCCc--cchHHHHHHHHH------cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHH
Q 016682 177 VRILKEGGMDAIKLEGGS--PSRITAARGIVE------AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL 248 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~--~e~~~~I~alv~------aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAl 248 (384)
.+.+.++|+|.+-+|=-. .|....+.++.+ .++|||..+=++.. .|...-|.+.+.+ +..+
T Consensus 170 i~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~-----~Gr~lsG~~~ea~------~~~l 238 (1229)
T PRK09490 170 TRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDA-----SGRTLSGQTTEAF------WNSL 238 (1229)
T ss_pred HHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECC-----CCccCCCCcHHHH------HHHH
Confidence 344447999999999541 344444444444 37999976433221 3444566665443 3334
Q ss_pred HHcCCcEEEecCC--C---HHHHHHHHhhcCCCEEEE-cCCCCCCchhhhHhhhhcCCC-CCCCCCCCcchhhhhhhhH-
Q 016682 249 QEVGCFSVVLECV--P---PPVAAAATSALQIPTIGI-GAGPFCSGQVLVYHDLLGMMQ-HPHHAKVTPKFCKQFARVG- 320 (384)
Q Consensus 249 eeAGAf~IvlE~V--p---~ela~~It~~l~IPtIGI-GAG~~cDGQvLV~~DlLG~~~-~P~~~~~~PkFvk~y~~~~- 320 (384)
+..|+++|=+=|. | .+.++.+++..++|++.. -||-. + ..|.++ .| ...-.++++|.+.+
T Consensus 239 ~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP-~--------~~~~yd~tP---e~~a~~~~~~~~~G~ 306 (1229)
T PRK09490 239 RHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLP-N--------AFGEYDETP---EEMAAQIGEFAESGF 306 (1229)
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCC-C--------CCCCCCCCH---HHHHHHHHHHHHcCC
Confidence 6889999999998 3 344555556667888766 34411 1 112221 12 22345556665444
Q ss_pred -----------HHHHHHHHHHHHHhccCCCCCCCCC---------------Cc-cC----ChhhHHHHHHHHHhcChhHH
Q 016682 321 -----------DVINKALLEYKEEVTNGSFPGPSHS---------------PY-KM----SSSDCNGFFNELQKLGFDKA 369 (384)
Q Consensus 321 -----------~~~~~A~~~y~~eV~~g~FP~~~h~---------------~y-~~----~~~e~~~f~~~~~~~~~~~~ 369 (384)
..=++++.+..+..+-+.-|....+ +| -| ...=..+|.+++.+.-++.|
T Consensus 307 v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~a 386 (1229)
T PRK09490 307 LNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEA 386 (1229)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHH
Confidence 2233455554444444433322211 01 01 11113578888888888888
Q ss_pred HHHHHHHH
Q 016682 370 AAVAAEAA 377 (384)
Q Consensus 370 ~~~~~~~~ 377 (384)
...|-.-.
T Consensus 387 l~~A~~qv 394 (1229)
T PRK09490 387 LDVARQQV 394 (1229)
T ss_pred HHHHHHHH
Confidence 77665543
No 324
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=91.04 E-value=1.8 Score=41.67 Aligned_cols=89 Identities=27% Similarity=0.393 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
.++++++..+..++ ++|..+|-|-=-++.-.+.|+++++.-=.+. || -| |-=. -+++.
T Consensus 22 ~~~e~a~~~a~Ali-~gGi~~IEITl~sp~a~e~I~~l~~~~p~~l--IG--------------AG-TVL~----~~q~~ 79 (211)
T COG0800 22 DDVEEALPLAKALI-EGGIPAIEITLRTPAALEAIRALAKEFPEAL--IG--------------AG-TVLN----PEQAR 79 (211)
T ss_pred CCHHHHHHHHHHHH-HcCCCeEEEecCCCCHHHHHHHHHHhCcccE--Ec--------------cc-cccC----HHHHH
Confidence 57899999999999 7999998886444556788999987420111 11 11 1100 23567
Q ss_pred HHHHcCCcEEEecCCCHHHHHHHHhhcCCCEE
Q 016682 247 ALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (384)
Q Consensus 247 AleeAGAf~IvlE~Vp~ela~~It~~l~IPtI 278 (384)
++.+|||..||=+++.+|+++. +..-++|++
T Consensus 80 ~a~~aGa~fiVsP~~~~ev~~~-a~~~~ip~~ 110 (211)
T COG0800 80 QAIAAGAQFIVSPGLNPEVAKA-ANRYGIPYI 110 (211)
T ss_pred HHHHcCCCEEECCCCCHHHHHH-HHhCCCccc
Confidence 7889999999999999999776 455799988
No 325
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.01 E-value=3.5 Score=43.87 Aligned_cols=69 Identities=30% Similarity=0.393 Sum_probs=42.5
Q ss_pred CChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE-eCCCCCCcCCHHHHHHHHHH
Q 016682 100 YDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG-DLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 100 yD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva-DmPfgsY~~s~e~av~nA~r 178 (384)
-+...+..+-++|+|+|.+ |+. +|+ ...+.+|+ +.|++.-|..+|++ |.- +.+++ ..
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~-D~a----~~~----~~~~~~~i---~~ik~~~p~~~v~agnv~------t~~~a----~~ 284 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVV-DTA----HGH----QEKMLEAL---RAVRALDPGVPIVAGNVV------TAEGT----RD 284 (479)
T ss_pred hHHHHHHHHHHhCCCEEEE-ecc----CCc----cHHHHHHH---HHHHHHCCCCeEEeeccC------CHHHH----HH
Confidence 3345566666789999876 322 455 34455555 45555666666765 652 44555 45
Q ss_pred HHHHhCCCEEEeC
Q 016682 179 ILKEGGMDAIKLE 191 (384)
Q Consensus 179 l~keaGAdaVKLE 191 (384)
++ ++|||+||+-
T Consensus 285 l~-~aGad~v~vg 296 (479)
T PRK07807 285 LV-EAGADIVKVG 296 (479)
T ss_pred HH-HcCCCEEEEC
Confidence 66 6999999953
No 326
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.99 E-value=4.6 Score=40.46 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE-Eecch----------hhhh---hccCCCCcCCCHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS----------AAMV---VHGHDTTLPITLEEMLV 142 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I-lVGDS----------l~mv---~lG~~dT~~VtldeMl~ 142 (384)
+.+|..++++..+. | .-.|+.+.+||||.| +=+-. ..+. -+| -...=-+...++
T Consensus 137 ~~mt~~eI~~~i~~---------~-~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yG--GslenR~rf~~E 204 (338)
T cd04733 137 RAMTEEEIEDVIDR---------F-AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYG--GSLENRARLLLE 204 (338)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCC--CCHHHHHHHHHH
Confidence 46888888887653 1 347888999999999 42211 1111 111 111223455678
Q ss_pred HHHHHHcccCCC-cEEEeCCC-----CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC
Q 016682 143 HCRAVARGAKRP-LLVGDLPF-----GTYESSTNQAVDTAVRILKEGGMDAIKLEGG 193 (384)
Q Consensus 143 h~raV~Rga~~~-~vvaDmPf-----gsY~~s~e~av~nA~rl~keaGAdaVKLEgg 193 (384)
.+++|++.++.- .|..|+.- +++ +.+++++-+.+| ++.|+|.|.+-++
T Consensus 205 iI~aIR~avG~d~~v~vris~~~~~~~g~--~~eea~~ia~~L-e~~Gvd~iev~~g 258 (338)
T cd04733 205 IYDAIRAAVGPGFPVGIKLNSADFQRGGF--TEEDALEVVEAL-EEAGVDLVELSGG 258 (338)
T ss_pred HHHHHHHHcCCCCeEEEEEcHHHcCCCCC--CHHHHHHHHHHH-HHcCCCEEEecCC
Confidence 888999888643 35688741 345 788888877665 4789999987655
No 327
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=90.91 E-value=10 Score=38.78 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=88.5
Q ss_pred HHHHHHHHHcccCCCcEEEeCCCCCCcC------------C----HHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHH
Q 016682 140 MLVHCRAVARGAKRPLLVGDLPFGTYES------------S----TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARG 203 (384)
Q Consensus 140 Ml~h~raV~Rga~~~~vvaDmPfgsY~~------------s----~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~a 203 (384)
+...+++|++..|.-+|++|.=+-.|.. + .+...+-|.... ++|||.|--.|=-+-++..||.
T Consensus 99 v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A-~AGaDiVAPSdMMDGrV~aIR~ 177 (323)
T PRK09283 99 VQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDNDETLELLAKQALSQA-EAGADIVAPSDMMDGRVGAIRE 177 (323)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccCCcCcCHHHHHHHHHHHHHHH-HhCCCEEEcccccccHHHHHHH
Confidence 4667788888889988999986655521 1 233444455555 6999999877532335666666
Q ss_pred HHH-cCCceeeeccCCcccc---ccc-CCcccc-------C-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 016682 204 IVE-AGIAVMGHVGLTPQAI---SVL-GGFRPQ-------G-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (384)
Q Consensus 204 lv~-aGIPV~gHiGLtPQ~~---~~l-gGfrvq-------G-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp-~ 263 (384)
..+ +|. .|+++.+=+. +.+ |=||-- | | +....++.++.+..=.+=|||+|.+. +.| -
T Consensus 178 aLd~~g~---~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YL 254 (323)
T PRK09283 178 ALDEAGF---TDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPYL 254 (323)
T ss_pred HHHHCCC---CCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 554 442 2334433221 111 112110 1 1 22345788888888888999999886 778 8
Q ss_pred HHHHHHHhhcCCCEEEE
Q 016682 264 PVAAAATSALQIPTIGI 280 (384)
Q Consensus 264 ela~~It~~l~IPtIGI 280 (384)
++++.+.+++++|+...
T Consensus 255 DIi~~~k~~~~~PvaaY 271 (323)
T PRK09283 255 DIIRRVKDEFNLPVAAY 271 (323)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 99999999999999876
No 328
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.86 E-value=1.3 Score=45.55 Aligned_cols=100 Identities=22% Similarity=0.378 Sum_probs=63.6
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
+..|++.+. .-+|..=|+=++..|+-+.++|+|.|.||=..|..+-=..- +..++.---++.|..+++....| ||+|
T Consensus 140 ik~ik~~~~-~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~-iIAD 217 (352)
T PF00478_consen 140 IKKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP-IIAD 217 (352)
T ss_dssp HHHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE-EEEE
T ss_pred HHHHHHhCC-CceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc-eeec
Confidence 444444432 34666669999999999999999999998555443321111 11333455577788888877655 9999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
|+- .+..+. .+.+ .+|||+|.+-
T Consensus 218 ---GGi-~~sGDi----~KAl-a~GAd~VMlG 240 (352)
T PF00478_consen 218 ---GGI-RTSGDI----VKAL-AAGADAVMLG 240 (352)
T ss_dssp ---SS--SSHHHH----HHHH-HTT-SEEEES
T ss_pred ---CCc-Ccccce----eeee-eecccceeec
Confidence 555 355565 3556 5999999994
No 329
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=90.80 E-value=15 Score=35.36 Aligned_cols=114 Identities=9% Similarity=-0.001 Sum_probs=70.2
Q ss_pred CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhh----hccCCCCcCCCHHHHH----HHHHHHHcccCCCcEEEeCCC
Q 016682 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV----VHGHDTTLPITLEEML----VHCRAVARGAKRPLLVGDLPF 162 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv----~lG~~dT~~VtldeMl----~h~raV~Rga~~~~vvaDmPf 162 (384)
+.++.++.-.+.--...+.++|+|.|-+..+..-. .+| .|.++.+ ..++..+. ... .+....|+
T Consensus 61 ~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~------~~~~~~~~~~~~~i~~a~~-~G~-~v~~~~~~ 132 (259)
T cd07939 61 PARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLG------KDRAWVLDQLRRLVGRAKD-RGL-FVSVGAED 132 (259)
T ss_pred CCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHH-CCC-eEEEeecc
Confidence 34555555345555666778999998654444322 222 3444444 33333322 222 35677787
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 163 GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
.+. .+++..++.+.++. +.|++.|.|-|-. .++.+.|+.+.+. ++|+--|
T Consensus 133 ~~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H 188 (259)
T cd07939 133 ASR-ADPDFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLRAATDLPLEFH 188 (259)
T ss_pred CCC-CCHHHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 554 68888888887776 6999999999842 5566777777753 5666555
No 330
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.80 E-value=2.4 Score=45.10 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=64.0
Q ss_pred CHHHHHHhhhC--CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhh--ccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 80 TLTHLRQKHKN--GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVV--HGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 80 t~~~lr~~k~~--g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~--lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
.+..+++.|+. +-++..=++-++..|+.+.++|+|+|-||=..|... -++..- .++.-.-+..|...++..+.|
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~-g~~~~~a~~~~~~~~~~~~~~- 330 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGV-GRPQFSAVLECAAEARKLGGH- 330 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCC-CCchHHHHHHHHHHHHHcCCc-
Confidence 33445555543 334444349999999999999999998776555432 222222 233334444444444444445
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg 192 (384)
|++| |++ .++.+.+ +.+ .+||++|.+-+
T Consensus 331 viad---Ggi-~~~~di~----kal-a~GA~~vm~g~ 358 (475)
T TIGR01303 331 VWAD---GGV-RHPRDVA----LAL-AAGASNVMVGS 358 (475)
T ss_pred EEEe---CCC-CCHHHHH----HHH-HcCCCEEeech
Confidence 9999 777 4777773 566 58999999943
No 331
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=90.75 E-value=4.9 Score=40.78 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc------CCCEEEEcCCCCCCchhhhHhhhhcCC
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL------QIPTIGIGAGPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l------~IPtIGIGAG~~cDGQvLV~~DlLG~~ 300 (384)
+++..+.+.+.|..+.+||||+|=.-.. +-.+ ..|.+.| ++|+++.- -.+++.=.==+-|.+|-.
T Consensus 132 ND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~~~v~ImsYs-aKyaSafYGPFRdAa~Sa 203 (314)
T cd00384 132 NDATLELLAKIAVSHAEAGADIVAPSDMMDGRV-AAIREALDEAGFSDVPIMSYS-AKYASAFYGPFRDAADSA 203 (314)
T ss_pred cHHHHHHHHHHHHHHHHcCCCeeecccccccHH-HHHHHHHHHCCCCCCceeecH-HHhhhhccchHHHHhhcC
Confidence 5667788999999999999998876544 4333 5555554 46666553 334444333445666654
No 332
>PRK09875 putative hydrolase; Provisional
Probab=90.74 E-value=12 Score=37.29 Aligned_cols=183 Identities=11% Similarity=0.144 Sum_probs=115.8
Q ss_pred CHHHHHHhhh-CCCcEEEEecCCh-----HHHHHHHHcCCCEEE-ecchhhhhhccCCC-CcCCCHHHHH-HHHHHHHcc
Q 016682 80 TLTHLRQKHK-NGEPITMVTAYDY-----PSAVHLDSAGIDICL-VGDSAAMVVHGHDT-TLPITLEEML-VHCRAVARG 150 (384)
Q Consensus 80 t~~~lr~~k~-~g~~I~mlTAyD~-----~sA~iae~AGiD~Il-VGDSl~mv~lG~~d-T~~VtldeMl-~h~raV~Rg 150 (384)
.+..|+++++ .++-|+=+|++++ .-+++.++.|+.+|. +|.-.... +|+ ....+.+++. ...+-|..|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~---~p~~~~~~~~e~la~~~i~ei~~G 112 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQDAF---FPEHVATRSVQELAQEMVDEIEQG 112 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc---CCHHHhcCCHHHHHHHHHHHHHHh
Confidence 5566666654 5578888999987 468899999999996 77543222 222 2356778876 556777777
Q ss_pred cC----CCcEEEeC--CCCCCcCCHHHHHHHHHHHHHHhCCC-EEEeCCCccchHHHHHHHHHcCC----ceeeeccCCc
Q 016682 151 AK----RPLLVGDL--PFGTYESSTNQAVDTAVRILKEGGMD-AIKLEGGSPSRITAARGIVEAGI----AVMGHVGLTP 219 (384)
Q Consensus 151 a~----~~~vvaDm--PfgsY~~s~e~av~nA~rl~keaGAd-aVKLEgg~~e~~~~I~alv~aGI----PV~gHiGLtP 219 (384)
.+ ++=+++=+ .++......+.+++.+.+.-+++|+- .++.+.+ .+-.+.++.+.+.|+ =|++|...++
T Consensus 113 i~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~-~~g~e~l~il~e~Gvd~~rvvi~H~d~~~ 191 (292)
T PRK09875 113 IDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFS-TMGLEQLALLQAHGVDLSRVTVGHCDLKD 191 (292)
T ss_pred hccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCc-cchHHHHHHHHHcCcCcceEEEeCCCCCC
Confidence 65 44445333 33334455667999999998899973 3456665 456777888999998 3568855332
Q ss_pred ccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE----ecC-CC-HHHHHHHHhhcCCCEEEEcCCCCCCchhhhH
Q 016682 220 QAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV----LEC-VP-PPVAAAATSALQIPTIGIGAGPFCSGQVLVY 293 (384)
Q Consensus 220 Q~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv----lE~-Vp-~ela~~It~~l~IPtIGIGAG~~cDGQvLV~ 293 (384)
+ ++.-+.+.+.||+.=| .++ .| ++.++.|..-+ -. +.-.|+|+.
T Consensus 192 --------------d-------~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~-------~~--Gy~drilLS 241 (292)
T PRK09875 192 --------------N-------LDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALR-------DR--GLLNRVMLS 241 (292)
T ss_pred --------------C-------HHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHH-------hc--CCCCeEEEe
Confidence 1 2344556678887554 122 34 34444443321 11 234688899
Q ss_pred hhh
Q 016682 294 HDL 296 (384)
Q Consensus 294 ~Dl 296 (384)
+|+
T Consensus 242 ~D~ 244 (292)
T PRK09875 242 MDI 244 (292)
T ss_pred CCC
Confidence 998
No 333
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=90.68 E-value=2.2 Score=43.64 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=79.4
Q ss_pred cEEEEecCChHHH---HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCH
Q 016682 93 PITMVTAYDYPSA---VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST 169 (384)
Q Consensus 93 ~I~mlTAyD~~sA---~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~ 169 (384)
.+.++|-....-. ..+=++|+++|..- .++...-.+.++....+.+++....+|++-|= +
T Consensus 148 ~LylIT~~~~~ll~~l~~al~~Gv~~VQLR---------~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~--------v 210 (347)
T PRK02615 148 RLYLITSPSENLLEVVEAALKGGVTLVQYR---------DKTADDRQRLEEAKKLKELCHRYGALFIVNDR--------V 210 (347)
T ss_pred CEEEEECCchhHHHHHHHHHHcCCCEEEEC---------CCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh--------H
Confidence 4666665422111 12225577776543 22222334556677777888777777777661 2
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 170 NQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 170 e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
+ +..+.|+|||+| |+ ... + +..... .+|-.++.|.+... +++++.-.
T Consensus 211 d--------lAl~~~aDGVHL-gq-~dl-~-~~~aR~-----------------llg~~~iIG~S~Hs----~~e~~~A~ 257 (347)
T PRK02615 211 D--------IALAVDADGVHL-GQ-EDL-P-LAVARQ-----------------LLGPEKIIGRSTTN----PEEMAKAI 257 (347)
T ss_pred H--------HHHHcCCCEEEe-Ch-hhc-C-HHHHHH-----------------hcCCCCEEEEecCC----HHHHHHHH
Confidence 2 223579999999 43 221 1 111111 01222345655433 23444555
Q ss_pred HcCCcEEEecC------------CCHHHHHHHHhhcCCCEEEEcC
Q 016682 250 EVGCFSVVLEC------------VPPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 250 eAGAf~IvlE~------------Vp~ela~~It~~l~IPtIGIGA 282 (384)
+.|||.|++=. +..+..+.+.+.+++|++.||.
T Consensus 258 ~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGG 302 (347)
T PRK02615 258 AEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGG 302 (347)
T ss_pred HcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECC
Confidence 78999998622 2257889999999999999984
No 334
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=90.51 E-value=4.6 Score=40.30 Aligned_cols=106 Identities=14% Similarity=0.236 Sum_probs=71.9
Q ss_pred CcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCC-----
Q 016682 92 EPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPF----- 162 (384)
Q Consensus 92 ~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPf----- 162 (384)
-|+++= -+.|+-..+.+=++||+-+.. |....+++|-+..||.|++-+... .|=+-+..
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~------------DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~e 145 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMI------------DASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQE 145 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence 365544 577888888888889888875 344679999999999887655321 01121111
Q ss_pred C-------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 163 G-------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 g-------sY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
+ -| .+|++| .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 146 d~~~~~~~~y-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLH 209 (285)
T PRK07709 146 DDVIAEGVIY-ADPAEC----KHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLH 209 (285)
T ss_pred CCcccccccC-CCHHHH----HHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEe
Confidence 0 16 689998 579999999998776332 2234566666653 8999988
No 335
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.45 E-value=7.1 Score=36.75 Aligned_cols=134 Identities=27% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCH------HHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITL------EEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~Vtl------deMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~r 178 (384)
+..++++|+|.|=+| .+.+. ++-...++.+++..+..-+.+..+-+ ....+
T Consensus 25 ~~~L~~~GV~~IEvg-------------~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~----------~~~i~ 81 (265)
T cd03174 25 AEALDEAGVDSIEVG-------------SGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR----------EKGIE 81 (265)
T ss_pred HHHHHHcCCCEEEec-------------cCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc----------hhhHH
Q ss_pred HHHHhCCCEEEeCCCccc------------------hHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCH--HHH
Q 016682 179 ILKEGGMDAIKLEGGSPS------------------RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNV--TSA 238 (384)
Q Consensus 179 l~keaGAdaVKLEgg~~e------------------~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~--~~a 238 (384)
..+++|++.|.+-.. .. ..+.|+.+.+.|++|... +-.-+. ..-
T Consensus 82 ~a~~~g~~~i~i~~~-~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~---------------~~~~~~~~~~~ 145 (265)
T cd03174 82 RALEAGVDEVRIFDS-ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS---------------LEDAFGCKTDP 145 (265)
T ss_pred HHHhCCcCEEEEEEe-cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE---------------EEeecCCCCCH
Q ss_pred HHHHHHHHHHHHcCCcEEEec-----CCC---HHHHHHHHhhcC-CCE
Q 016682 239 VKVVETALALQEVGCFSVVLE-----CVP---PPVAAAATSALQ-IPT 277 (384)
Q Consensus 239 ~~ll~rAkAleeAGAf~IvlE-----~Vp---~ela~~It~~l~-IPt 277 (384)
+.+.+.++.+.++|++.|.+- +.| .++.+.+.+.++ +|+
T Consensus 146 ~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~ 193 (265)
T cd03174 146 EYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPL 193 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeE
No 336
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.42 E-value=2.9 Score=43.08 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 78 ~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v 156 (384)
.++..++..+++ -+.||++=++-+...|+.+.++|+|.|.|+-+.|-.. |+.+-+++-+.. |++..+.+ |
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql----d~~~~~~~~L~e----i~~~~~~~-v 292 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL----DDAIAPIEALAE----IVAATYKP-V 292 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC----cCCccHHHHHHH----HHHHhCCe-E
Confidence 467777666554 2458888899999999999999999999886665443 222334444443 33334444 8
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
++| |++. +..+++ +.+ ..||++|-+-
T Consensus 293 i~d---GGIr-~g~Dv~----KAL-aLGA~aV~iG 318 (361)
T cd04736 293 LID---SGIR-RGSDIV----KAL-ALGANAVLLG 318 (361)
T ss_pred EEe---CCCC-CHHHHH----HHH-HcCCCEEEEC
Confidence 888 7774 666774 566 5899999983
No 337
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=90.39 E-value=0.9 Score=44.73 Aligned_cols=61 Identities=34% Similarity=0.440 Sum_probs=41.9
Q ss_pred eeeccCCcccccccCCccccCCCH-HHHHHHHHHHHHHHHcCCcEEEecCC---CH-------------HHHHHHHhhcC
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNV-TSAVKVVETALALQEVGCFSVVLECV---PP-------------PVAAAATSALQ 274 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~-~~a~~ll~rAkAleeAGAf~IvlE~V---p~-------------ela~~It~~l~ 274 (384)
|-|+.=.|-+.. | |.+- +-.+.++++|++|+++|+|+|.+|.. |= -++.++.+.++
T Consensus 7 mvHl~pLPGsP~----~---~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~ 79 (257)
T TIGR00259 7 MVHLLPLPGSPS----F---DDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVS 79 (257)
T ss_pred EEcCCCCCCCCC----C---CCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 557665564443 2 3333 34478999999999999999999954 31 24455678889
Q ss_pred CCEEEE
Q 016682 275 IPTIGI 280 (384)
Q Consensus 275 IPtIGI 280 (384)
+| +||
T Consensus 80 ~p-~Gv 84 (257)
T TIGR00259 80 IP-LGI 84 (257)
T ss_pred CC-eee
Confidence 99 555
No 338
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=90.33 E-value=3 Score=40.29 Aligned_cols=153 Identities=22% Similarity=0.285 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.+..+.+.|.|+|+||-|. .+|.+.|..-.++|++.. .|.+. .| |+. ++. . -
T Consensus 19 ~~~~~~~~gtdai~vGGS~-----------~vt~~~~~~~v~~ik~~~-lPvil--fp-~~~----~~i-------~--~ 70 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQ-----------GVTYEKTDTLIEALRRYG-LPIIL--FP-SNP----TNV-------S--R 70 (223)
T ss_pred HHHHHHhcCCCEEEEcCCC-----------cccHHHHHHHHHHHhccC-CCEEE--eC-CCc----ccc-------C--c
Confidence 4556778899999999665 578888888888888755 88665 56 232 222 2 3
Q ss_pred CCCEEEeCC----Cc-cc----hHHHHHHHHHcCCce--eeeccCCccc-ccccCCccccCCCHHHHHHHHHHHHHHHH-
Q 016682 184 GMDAIKLEG----GS-PS----RITAARGIVEAGIAV--MGHVGLTPQA-ISVLGGFRPQGKNVTSAVKVVETALALQE- 250 (384)
Q Consensus 184 GAdaVKLEg----g~-~e----~~~~I~alv~aGIPV--~gHiGLtPQ~-~~~lgGfrvqGrt~~~a~~ll~rAkAlee- 250 (384)
+||++-+=- .. .+ +.+.++.+.+.+..+ .|=|=++|.. +.++++-+..=++. .++.. +-++.+
T Consensus 71 ~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~---~~~aa-~~~lA~~ 146 (223)
T TIGR01768 71 DADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDK---EDLAA-YAAMAEE 146 (223)
T ss_pred CCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCc---HHHHH-HHHHHHH
Confidence 588876531 10 11 122222222222111 1222233322 11222111111111 22222 222222
Q ss_pred -cCCcEEEecC-------CCHHHHHHHHhhc-CCCEEEEcCCCCCCch
Q 016682 251 -VGCFSVVLEC-------VPPPVAAAATSAL-QIPTIGIGAGPFCSGQ 289 (384)
Q Consensus 251 -AGAf~IvlE~-------Vp~ela~~It~~l-~IPtIGIGAG~~cDGQ 289 (384)
-|--.++||. ++.++++.+.+.+ ++|++ +|.|=.+.-|
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~-vGGGIrs~e~ 193 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLF-VGGGIRSVEK 193 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEE-EecCCCCHHH
Confidence 5888999993 2478999999998 89986 4666544333
No 339
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=90.32 E-value=3.7 Score=42.10 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEecC---------CC---------HHHHHHHHhhcCCCEEEEcCCCCCCch----
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLEC---------VP---------PPVAAAATSALQIPTIGIGAGPFCSGQ---- 289 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE~---------Vp---------~ela~~It~~l~IPtIGIGAG~~cDGQ---- 289 (384)
|.|. ++.++-++.++++|+|.|-+-+ .| .+.++.|.+.+++|+|+- |.-.|-+
T Consensus 248 g~~~---e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~--G~i~~~~~~~~ 322 (382)
T cd02931 248 GRDL---EEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMA--GRMEDPELASE 322 (382)
T ss_pred CCCH---HHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEe--CCCCCHHHHHH
Confidence 4454 4456678888999999997631 11 257888999999998854 4443322
Q ss_pred hhh--HhhhhcCCCCCCCCCCCcchhhhhhhhH
Q 016682 290 VLV--YHDLLGMMQHPHHAKVTPKFCKQFARVG 320 (384)
Q Consensus 290 vLV--~~DlLG~~~~P~~~~~~PkFvk~y~~~~ 320 (384)
+|= .-|++|+.. | --.-|-|+++..+..
T Consensus 323 ~l~~g~~D~V~~gR-~--~ladP~l~~k~~~g~ 352 (382)
T cd02931 323 AINEGIADMISLGR-P--LLADPDVVNKIRRGR 352 (382)
T ss_pred HHHcCCCCeeeech-H--hHhCccHHHHHHcCC
Confidence 221 247888763 1 112477777776654
No 340
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.19 E-value=2.9 Score=42.16 Aligned_cols=116 Identities=24% Similarity=0.265 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHcC--CceeeeccCCcccccccC
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS------------------PSRITAARGIVEAG--IAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~aG--IPV~gHiGLtPQ~~~~lg 226 (384)
.+|+...++| +++.+-|++.|.|--|. +-..+.|++++++. |||.- ..-
T Consensus 76 sdp~~l~eaA-~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTV---------KiR- 144 (323)
T COG0042 76 SDPELLAEAA-KIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTV---------KIR- 144 (323)
T ss_pred CCHHHHHHHH-HHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEE---------EEe-
Confidence 4786666655 55557889999998661 45667888888765 89852 111
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC----------HHHHHHHHhhcC-CCEEEEcCC------------
Q 016682 227 GFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP----------PPVAAAATSALQ-IPTIGIGAG------------ 283 (384)
Q Consensus 227 GfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp----------~ela~~It~~l~-IPtIGIGAG------------ 283 (384)
.|-++.+ ....+-++.++++||++|.+=+=. =+.++++.+.++ ||+|+=|.-
T Consensus 145 ----lG~d~~~-~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 145 ----LGWDDDD-ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred ----cccCccc-ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHh
Confidence 2333322 345678899999999999987643 367899999999 999865542
Q ss_pred CCCCchhhhHhhhhcC
Q 016682 284 PFCSGQVLVYHDLLGM 299 (384)
Q Consensus 284 ~~cDGQvLV~~DlLG~ 299 (384)
.+||| |++.-..+|.
T Consensus 220 tg~Dg-VMigRga~~n 234 (323)
T COG0042 220 TGADG-VMIGRGALGN 234 (323)
T ss_pred hCCCE-EEEcHHHccC
Confidence 23777 6666666653
No 341
>PLN02535 glycolate oxidase
Probab=90.18 E-value=3.8 Score=42.21 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=69.8
Q ss_pred CCCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 77 ~~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
..+|.++++.+++ -+.||++=.+-+...|+.+.++|+|.|.|..+.|. ..|..+.|++-+.+..+++.. ..|
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr----~~d~~~~t~~~L~ev~~av~~--~ip- 280 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR----QLDYSPATISVLEEVVQAVGG--RVP- 280 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC----CCCCChHHHHHHHHHHHHHhc--CCC-
Confidence 3578888887764 23588888888888999999999999988766653 234455565555554444422 344
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg 192 (384)
|++| |+. .+..+++ +.+ ..||++|-+-.
T Consensus 281 Vi~d---GGI-r~g~Dv~----KAL-alGA~aV~vGr 308 (364)
T PLN02535 281 VLLD---GGV-RRGTDVF----KAL-ALGAQAVLVGR 308 (364)
T ss_pred EEee---CCC-CCHHHHH----HHH-HcCCCEEEECH
Confidence 8888 777 4677774 566 58999999943
No 342
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.13 E-value=2.8 Score=41.16 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH-
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE- 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke- 182 (384)
.|+.++++|+|.+++--. .-...+-++++.|.+.|+..++.|+++=|.| ++..+++.. .+|.++
T Consensus 86 ~a~~a~~~Gad~v~~~pP---------~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~--g~~l~~~~l----~~L~~~~ 150 (289)
T cd00951 86 YAQAAEKAGADGILLLPP---------YLTEAPQEGLYAHVEAVCKSTDLGVIVYNRA--NAVLTADSL----ARLAERC 150 (289)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHH----HHHHhcC
Confidence 357788999999987321 1224578999999999999999999998854 455677765 356642
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||-..+ . ...+..+.+
T Consensus 151 pnivgiKds~~-d--~~~~~~~~~ 171 (289)
T cd00951 151 PNLVGFKDGVG-D--IELMRRIVA 171 (289)
T ss_pred CCEEEEEeCCC-C--HHHHHHHHH
Confidence 56889998766 2 344444543
No 343
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.07 E-value=17 Score=37.11 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=52.4
Q ss_pred cCCh-HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHH
Q 016682 99 AYDY-PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 99 AyD~-~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~ 177 (384)
.||. .-.++++..+.|++-++=.... -+..+. ..-.++.++...+.|++.++.|+++=-.++ ..+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l~~~q-e~~~p~-g~~~f~~~le~i~~i~~~~~vPVivK~~g~---g~s~~~a----- 203 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHLNPLQ-ELVQPE-GDRDFRGWLDNIAEIVSALPVPVIVKEVGF---GISKETA----- 203 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCccch-hhcCCC-CcccHHHHHHHHHHHHHhhCCCEEEEeCCC---CCcHHHH-----
Confidence 4543 3566788889999977621111 112222 233578888999999998888866532333 2455444
Q ss_pred HHHHHhCCCEEEeCC
Q 016682 178 RILKEGGMDAIKLEG 192 (384)
Q Consensus 178 rl~keaGAdaVKLEg 192 (384)
+.+.++|+|+|-+-|
T Consensus 204 ~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 204 KRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHcCCCEEEECC
Confidence 344479999999965
No 344
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.06 E-value=19 Score=35.43 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=88.7
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
-+..|++.+++-...++-++||..++..+.+ .+|++-+|... ++--+++. ++.+ ++.| |+.=
T Consensus 67 gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~~------------~~n~~LL~---~va~-tgkP-Vilk 128 (250)
T PRK13397 67 GIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGARN------------MQNFEFLK---TLSH-IDKP-ILFK 128 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECccc------------ccCHHHHH---HHHc-cCCe-EEEe
Confidence 4666666666656668889999999999999 69999999544 22244544 4443 4566 5555
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeC-CCc----c-c-h--HHHHHHHHH-cCCceeeeccCCcccccccCCc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGM-DAIKLE-GGS----P-S-R--ITAARGIVE-AGIAVMGHVGLTPQAISVLGGF 228 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGA-daVKLE-gg~----~-e-~--~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGf 228 (384)
-++ . .++++....+-++. +.|. +.+-+| |-+ . + . ...|..+.+ .+.||+- -|. |.
T Consensus 129 ~G~--~-~t~~e~~~A~e~i~-~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPViv----d~S--Hs---- 194 (250)
T PRK13397 129 RGL--M-ATIEEYLGALSYLQ-DTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIV----DVS--HS---- 194 (250)
T ss_pred CCC--C-CCHHHHHHHHHHHH-HcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEE----CCC--CC----
Confidence 442 2 46777665555554 6777 688888 421 1 1 1 123444444 5788752 222 12
Q ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 016682 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (384)
Q Consensus 229 rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V 261 (384)
.|+- +-+..-+++-..+||++|++|.=
T Consensus 195 --~G~r----~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 195 --TGRR----DLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred --Cccc----chHHHHHHHHHHhCCCEEEEEec
Confidence 2221 22344577888999999999954
No 345
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.02 E-value=2.4 Score=43.74 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=78.6
Q ss_pred ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHH
Q 016682 98 TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAV 177 (384)
Q Consensus 98 TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~ 177 (384)
+.=|.+++.++-+.|..-++....+ ...++++ +.++. .|. ++ - .+++. ..|.
T Consensus 54 gVtd~~fr~~~~~~Galgvvsaegl---~~~~~~~-----~~~~~---QI~-g~-------------~-~~~~~--a~aa 105 (369)
T TIGR01304 54 ALVSPEFAIELGELGGLGVLNLEGL---WGRHEDP-----DPAIA---KIA-EA-------------Y-EEGDQ--AAAT 105 (369)
T ss_pred cccCHHHHHHHHHcCCcccccchHH---HhcCCCH-----HHHHH---HHh-hc-------------C-CChHH--HHHH
Confidence 5679999999999998433222111 2345553 33331 111 11 1 23333 2355
Q ss_pred HHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
+++++.+++.++. +-+.+.|+.++++++.|-. .++| ....+.++.++++|+++|+
T Consensus 106 ~~~~e~~~~~~~p----~l~~~ii~~vr~a~Vtvki--Rl~~-------------------~~~~e~a~~l~eAGad~I~ 160 (369)
T TIGR01304 106 RLLQELHAAPLKP----ELLGERIAEVRDSGVITAV--RVSP-------------------QNAREIAPIVVKAGADLLV 160 (369)
T ss_pred HHHHHcCCCccCh----HHHHHHHHHHHhcceEEEE--ecCC-------------------cCHHHHHHHHHHCCCCEEE
Confidence 6778888888654 4467888999988744332 1211 2456688899999999999
Q ss_pred ec-----------CCCHHHHHHHHhhcCCCEEE
Q 016682 258 LE-----------CVPPPVAAAATSALQIPTIG 279 (384)
Q Consensus 258 lE-----------~Vp~ela~~It~~l~IPtIG 279 (384)
+- .-+...+.++.++++||+|+
T Consensus 161 ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 161 IQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred EeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 73 12334446666789999985
No 346
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.98 E-value=4.5 Score=40.38 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC---CCcEEEeCCCC-
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---RPLLVGDLPFG- 163 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~---~~~vvaDmPfg- 163 (384)
.+-|+++= -+.|+...+-+=++||+-+.+ |....+++|.+..++.|++-+. .+ |=+-+..-
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~------------DgS~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vg 139 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMI------------DGAALPFEENIAFTKEAVDFAKSYGVP-VEAELGAIL 139 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeccCC
Confidence 34455443 566777777777889888876 3456799999999998876543 22 21222211
Q ss_pred -----------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc-CCceeee
Q 016682 164 -----------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 164 -----------sY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a-GIPV~gH 214 (384)
.| .+|+++ .+|++++|+|++.+-=|+ .-..++++.|.++ +||++-|
T Consensus 140 g~ed~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlH 205 (283)
T PRK07998 140 GKEDDHVSEADCK-TEPEKV----KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIH 205 (283)
T ss_pred Ccccccccccccc-CCHHHH----HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEe
Confidence 15 688888 679999999999887542 1225777777764 8999988
No 347
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.95 E-value=6.3 Score=43.06 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=74.8
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC--CCCCCcCCHHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL--PFGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm--PfgsY~~s~e~av~nA~rl~k 181 (384)
..+.+.++|+|++-+-|++.-. +.|...++.+++. .. .+.+.+ -++.+ .+++..++.+.++.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~-G~-~v~~~i~~t~~p~-~t~~~~~~~a~~l~- 164 (592)
T PRK09282 101 FVEKAAENGIDIFRIFDALNDV------------RNMEVAIKAAKKA-GA-HVQGTISYTTSPV-HTIEKYVELAKELE- 164 (592)
T ss_pred HHHHHHHCCCCEEEEEEecChH------------HHHHHHHHHHHHc-CC-EEEEEEEeccCCC-CCHHHHHHHHHHHH-
Confidence 3566778899999998888543 4555555655432 21 232222 22334 47888988888887
Q ss_pred HhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcE
Q 016682 182 EGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFS 255 (384)
Q Consensus 182 eaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~ 255 (384)
++||+.|.|-|-. .+..+.|+++.+. ++|+--| ..+.. |+ .+.-..+--+|||+.
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H------~Hnt~-Gl------------a~An~laAv~aGad~ 225 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLH------SHCTS-GL------------APMTYLKAVEAGVDI 225 (592)
T ss_pred HcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEE------EcCCC-Cc------------HHHHHHHHHHhCCCE
Confidence 7999999999842 4566777777764 6777666 22222 21 233455556899985
Q ss_pred E
Q 016682 256 V 256 (384)
Q Consensus 256 I 256 (384)
|
T Consensus 226 v 226 (592)
T PRK09282 226 I 226 (592)
T ss_pred E
Confidence 4
No 348
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.93 E-value=24 Score=38.76 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=82.0
Q ss_pred HHHHHHhhhCCCcEEEEec------CCh-------HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH
Q 016682 81 LTHLRQKHKNGEPITMVTA------YDY-------PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTA------yD~-------~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV 147 (384)
+..|++.. .+.+|.|+.- |.- ..-+.+.++|+|++-+.|++.- ++-|...++.+
T Consensus 67 lr~l~~~~-~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd------------~~~~~~ai~~a 133 (593)
T PRK14040 67 LRELKKAM-PNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND------------PRNLETALKAV 133 (593)
T ss_pred HHHHHHhC-CCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc------------HHHHHHHHHHH
Confidence 55565543 4467766532 222 1244567889999999987743 25566666666
Q ss_pred HcccCCC--cEE-EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeeccCC
Q 016682 148 ARGAKRP--LLV-GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHVGLT 218 (384)
Q Consensus 148 ~Rga~~~--~vv-aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHiGLt 218 (384)
+..-... .|. .+-| . .+.+-.++.+..+. +.||+.|.|-|-. .+..+.|++|.+. ++|+--|
T Consensus 134 k~~G~~~~~~i~yt~~p---~-~~~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H---- 204 (593)
T PRK14040 134 RKVGAHAQGTLSYTTSP---V-HTLQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLH---- 204 (593)
T ss_pred HHcCCeEEEEEEEeeCC---c-cCHHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEE----
Confidence 5321111 011 2333 1 25666666665555 7999999999852 5566777777753 6888777
Q ss_pred cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 219 PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+.+| -.+.-..+-.+|||+.|
T Consensus 205 --~Hnt~G-------------lA~An~laAieAGa~~v 227 (593)
T PRK14040 205 --CHATTG-------------LSTATLLKAIEAGIDGV 227 (593)
T ss_pred --ECCCCc-------------hHHHHHHHHHHcCCCEE
Confidence 223232 12334556678999854
No 349
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.93 E-value=5 Score=41.64 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=71.2
Q ss_pred hhccCCCCcCC---CHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC----------
Q 016682 125 VVHGHDTTLPI---TLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE---------- 191 (384)
Q Consensus 125 v~lG~~dT~~V---tldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE---------- 191 (384)
.+.|+++...+ +++..+.+.+.+.+..+.-.|++.+- +.| ++++-.+.+.++ +++|||++-|-
T Consensus 82 n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~-~~~--s~~~~~~~a~~~-e~~GaD~iELNiSCPn~~~~r 157 (385)
T PLN02495 82 RVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIM-EEY--NKDAWEEIIERV-EETGVDALEINFSCPHGMPER 157 (385)
T ss_pred ccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEcc-CCC--CHHHHHHHHHHH-HhcCCCEEEEECCCCCCCCcC
Confidence 45677777644 59999998888876665433777763 334 677777777665 57999998762
Q ss_pred C------CccchH-HHHHHHHH-cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 192 G------GSPSRI-TAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 192 g------g~~e~~-~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
+ +..+.+ +.++++.+ ..|||+-= |+|.. ..+.+-|++++++||++|++
T Consensus 158 ~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vK--LsPn~-----------------t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 158 KMGAAVGQDCDLLEEVCGWINAKATVPVWAK--MTPNI-----------------TDITQPARVALKSGCEGVAA 213 (385)
T ss_pred ccchhhccCHHHHHHHHHHHHHhhcCceEEE--eCCCh-----------------hhHHHHHHHHHHhCCCEEEE
Confidence 1 111222 22244443 36898854 33421 12667788899999999985
No 350
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.91 E-value=3.4 Score=42.35 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCcEEEe--------cCCC--HHHHHHHHhhc--CCCEEEEcCCCCCCchh
Q 016682 243 ETALALQEVGCFSVVL--------ECVP--PPVAAAATSAL--QIPTIGIGAGPFCSGQV 290 (384)
Q Consensus 243 ~rAkAleeAGAf~Ivl--------E~Vp--~ela~~It~~l--~IPtIGIGAG~~cDGQv 290 (384)
++|+.+.++||++|++ .+.| -+...+|.+++ .+|+|+ .|.-.+|+=
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~--dGGIr~g~D 290 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIF--DSGVRRGEH 290 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEE--ECCCCCHHH
Confidence 6888999999999999 4444 36777888888 588764 444444443
No 351
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=89.89 E-value=3 Score=41.05 Aligned_cols=109 Identities=26% Similarity=0.227 Sum_probs=74.0
Q ss_pred CHHHHHHhhhCCCcEEEE-ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 80 TLTHLRQKHKNGEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
|++.-..+-+.| -++++ |--|..-|+-++++|+-++.=.-+..-.-+|..+ -+..+-|+..++.| ||+
T Consensus 119 tl~Aae~Lv~eG-F~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n---------~~~l~iiie~a~VP-viV 187 (262)
T COG2022 119 TLKAAEQLVKEG-FVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQN---------PYNLEIIIEEADVP-VIV 187 (262)
T ss_pred HHHHHHHHHhCC-CEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCC---------HHHHHHHHHhCCCC-EEE
Confidence 444445566665 66776 5567889999999999999733344444456555 34456666777777 889
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCC------ccchHHHHHHHHHcC
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGG------SPSRITAARGIVEAG 208 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg------~~e~~~~I~alv~aG 208 (384)
|-.-|+ |.+| ...| |-|+|+|-+--. ...|+...+..+++|
T Consensus 188 DAGiG~----pSdA----a~aM-ElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AG 234 (262)
T COG2022 188 DAGIGT----PSDA----AQAM-ELGADAVLLNTAIARAKDPVAMARAFALAVEAG 234 (262)
T ss_pred eCCCCC----hhHH----HHHH-hcccceeehhhHhhccCChHHHHHHHHHHHHHh
Confidence 977654 4455 3567 799999988632 146777788888776
No 352
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=89.88 E-value=23 Score=38.15 Aligned_cols=142 Identities=15% Similarity=0.248 Sum_probs=79.6
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
|+-..++|+|+|=+|-. +|.+ ..++|....+++++..+.| |+.|.. +++.+ + +.+ ++|
T Consensus 171 A~~~~~~GADIIDIG~~---------st~p-~~~~v~~~V~~l~~~~~~p-ISIDT~------~~~v~-e---aAL-~aG 228 (499)
T TIGR00284 171 AARMERDGADMVALGTG---------SFDD-DPDVVKEKVKTALDALDSP-VIADTP------TLDEL-Y---EAL-KAG 228 (499)
T ss_pred HHHHHHCCCCEEEECCC---------cCCC-cHHHHHHHHHHHHhhCCCc-EEEeCC------CHHHH-H---HHH-HcC
Confidence 33444789999988721 2222 3456888888887665555 889964 34433 3 345 369
Q ss_pred CCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec-CC-C
Q 016682 185 MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-CV-P 262 (384)
Q Consensus 185 AdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE-~V-p 262 (384)
|+.|+==.+ ...-+.+..+.+.|.+|+. +|.. ...+.+.+.+....+.++|..-|++. .+ |
T Consensus 229 AdiINsVs~-~~~d~~~~l~a~~g~~vVl----m~~~------------~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 229 ASGVIMPDV-ENAVELASEKKLPEDAFVV----VPGN------------QPTNYEELAKAVKKLRTSGYSKVAADPSLSP 291 (499)
T ss_pred CCEEEECCc-cchhHHHHHHHHcCCeEEE----EcCC------------CCchHHHHHHHHHHHHHCCCCcEEEeCCCCc
Confidence 999983222 1122333444566888873 3421 01122455556677889999556655 33 2
Q ss_pred --HHHHH------HHHhhcCCCEEEEcCCCCC
Q 016682 263 --PPVAA------AATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 263 --~ela~------~It~~l~IPtIGIGAG~~c 286 (384)
.++.+ .+.+.++.|+. +|.|+-+
T Consensus 292 ~~~~l~~sL~~l~~~r~~~~~Pil-~GvSNvt 322 (499)
T TIGR00284 292 PLLGLLESIIRFRRASRLLNVPLV-FGAANVT 322 (499)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEE-Eeecccc
Confidence 22322 23346789964 4555553
No 353
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.86 E-value=5.2 Score=40.45 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCcEEEecC---------C---CHHHHHHHHhhc--CCCEEEEcC
Q 016682 239 VKVVETALALQEVGCFSVVLEC---------V---PPPVAAAATSAL--QIPTIGIGA 282 (384)
Q Consensus 239 ~~ll~rAkAleeAGAf~IvlE~---------V---p~ela~~It~~l--~IPtIGIGA 282 (384)
++.++-++.++++|+|.|-+-+ . ..+.++.|.+.+ ++|+|+.|.
T Consensus 235 ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg 292 (353)
T cd04735 235 EDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS 292 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC
Confidence 4567788888999999987632 0 135567777776 899987654
No 354
>PRK12999 pyruvate carboxylase; Reviewed
Probab=89.86 E-value=4.6 Score=47.38 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=93.6
Q ss_pred HHHHHHHHc--CCCEEEecchhhh-hhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE---EeCCCCCCcCCHHHHHHHH
Q 016682 103 PSAVHLDSA--GIDICLVGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV---GDLPFGTYESSTNQAVDTA 176 (384)
Q Consensus 103 ~sA~iae~A--GiD~IlVGDSl~m-v~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv---aDmPfgsY~~s~e~av~nA 176 (384)
.-|..++++ |++.|=+|-.... +++.+-+. +--|.+ +.+++..++..+. =-.-.-+|..-|+..++--
T Consensus 559 ~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e---~p~erl---~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 559 RIAPATARLLPNLFSLEMWGGATFDVAYRFLKE---DPWERL---AELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred HHHHHHHHHhCCCCEEEeeCCcchhhhccccCC---CHHHHH---HHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 457788999 9999966632211 22333222 113333 4444444433222 1111124543356666654
Q ss_pred HHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCC
Q 016682 177 VRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC 253 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGA 253 (384)
++...+.|+|.+.+=+.. +.+...|+++.++|.-+.+-|+.| |+..--.|+....+-+++-++.++++||
T Consensus 633 i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~yt-------g~~~d~~~~~~~~~~~~~~a~~l~~~Ga 705 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYT-------GDILDPARAKYDLDYYVDLAKELEKAGA 705 (1146)
T ss_pred HHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEE-------ecCCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 555557999999998874 345566777777885444444433 1111112322345678889999999999
Q ss_pred cEEEec-C--C--C---HHHHHHHHhhcCCCE
Q 016682 254 FSVVLE-C--V--P---PPVAAAATSALQIPT 277 (384)
Q Consensus 254 f~IvlE-~--V--p---~ela~~It~~l~IPt 277 (384)
+.|.+- + + | .++.+.|.+++++|+
T Consensus 706 ~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi 737 (1146)
T PRK12999 706 HILAIKDMAGLLKPAAAYELVSALKEEVDLPI 737 (1146)
T ss_pred CEEEECCccCCCCHHHHHHHHHHHHHHcCCeE
Confidence 999886 2 2 5 466677777788884
No 355
>PRK07475 hypothetical protein; Provisional
Probab=89.86 E-value=0.55 Score=45.27 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcCCCEEE
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQIPTIG 279 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~IPtIG 279 (384)
.+++-...+++.++.|+++||++|++.|=. .....+|.++++||++.
T Consensus 59 ~~~~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ 106 (245)
T PRK07475 59 DDPSLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVAT 106 (245)
T ss_pred CCccHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEec
Confidence 345567899999999999999999999964 66778888889999984
No 356
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=89.84 E-value=5.6 Score=40.45 Aligned_cols=138 Identities=20% Similarity=0.275 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHcccCCCcEE-----EeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH
Q 016682 134 PITLEEMLVHCRAVARGAKRPLLV-----GDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 134 ~VtldeMl~h~raV~Rga~~~~vv-----aDmPfgsY~~s~--e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
..+.+.+-...+.++.-++.|+.+ .-.|++-+.... ....+..--++++.|.-.|..+-| .--.+.|+.+..
T Consensus 47 ~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g-~~~~~~i~~~~~ 125 (336)
T COG2070 47 GLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFG-APPAEFVARLKA 125 (336)
T ss_pred cCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCC-CCcHHHHHHHHH
Confidence 344455556666666677777332 111121111111 122222334555558999999887 445678888888
Q ss_pred cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-----------C---HHHHHHHHhh
Q 016682 207 AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV-----------P---PPVAAAATSA 272 (384)
Q Consensus 207 aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V-----------p---~ela~~It~~ 272 (384)
.|+.|..- . . + .+.|+.++++|+|.|+.++- . ..|..+|.+.
T Consensus 126 ~g~~v~~~----------v-----~--~-------~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~ 181 (336)
T COG2070 126 AGIKVIHS----------V-----I--T-------VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDA 181 (336)
T ss_pred cCCeEEEE----------e-----C--C-------HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHH
Confidence 99887521 0 1 1 34788999999999999876 1 5788999999
Q ss_pred cC-CCEEEEcCCCCCCchhhhHhhhhc
Q 016682 273 LQ-IPTIGIGAGPFCSGQVLVYHDLLG 298 (384)
Q Consensus 273 l~-IPtIGIGAG~~cDGQvLV~~DlLG 298 (384)
++ ||+| -||.-.||.=+..-=+||
T Consensus 182 ~~~iPVi--AAGGI~dg~~i~AAlalG 206 (336)
T COG2070 182 VDGIPVI--AAGGIADGRGIAAALALG 206 (336)
T ss_pred hcCCCEE--EecCccChHHHHHHHHhc
Confidence 99 9997 356666666555444455
No 357
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=89.81 E-value=22 Score=35.16 Aligned_cols=179 Identities=16% Similarity=0.079 Sum_probs=101.3
Q ss_pred CcEEEEecCChHHHHHHH------HcCCCEE--EecchhhhhhccCCCCcCC-CHHHHHHHHHHHHcccCCCcEE--EeC
Q 016682 92 EPITMVTAYDYPSAVHLD------SAGIDIC--LVGDSAAMVVHGHDTTLPI-TLEEMLVHCRAVARGAKRPLLV--GDL 160 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae------~AGiD~I--lVGDSl~mv~lG~~dT~~V-tldeMl~h~raV~Rga~~~~vv--aDm 160 (384)
++|.-+||.|.....+-+ ++|++=| +.||....--...+..... .-.++++..+ +-.+..|-+ +--
T Consensus 61 ~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~---~~~~~~f~igva~~ 137 (281)
T TIGR00677 61 ETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIR---SKYGDYFCIGVAGY 137 (281)
T ss_pred CeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHH---HhCCCceEEEEEEC
Confidence 688999999998665543 6799976 5999874221111111111 1345555444 322222333 777
Q ss_pred CCCCCcCC-HHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCcc-ccc------ccCCccc
Q 016682 161 PFGTYESS-TNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQ-AIS------VLGGFRP 230 (384)
Q Consensus 161 PfgsY~~s-~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtPQ-~~~------~lgGfrv 230 (384)
|.|..+.. .+.-++.-.+=+ ++||+-+---=-. +...+.++.+.++||.+-...|++|= +.. .+.|-.+
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki-~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~~Gi~v 216 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKV-DAGADFIITQLFYDVDNFLKFVNDCRAIGIDCPIVPGIMPINNYASFLRRAKWSKTKI 216 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-HcCCCEeeccceecHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHhcCCCCC
Confidence 87655433 222233333333 5899966442110 33456677777776665557899992 111 1223322
Q ss_pred c---------CCCH-H-----HHHHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcC
Q 016682 231 Q---------GKNV-T-----SAVKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQ 274 (384)
Q Consensus 231 q---------Grt~-~-----~a~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~ 274 (384)
- .+++ + ..+-.++.++.+.+.|+.+|-+=.+- ++.+..|.++++
T Consensus 217 P~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~~~~~~il~~l~ 276 (281)
T TIGR00677 217 PQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLEKAALMILERLG 276 (281)
T ss_pred CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCchHHHHHHHHHcC
Confidence 1 1222 2 11345667777778899998888884 888888888776
No 358
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.81 E-value=11 Score=36.36 Aligned_cols=144 Identities=20% Similarity=0.234 Sum_probs=79.9
Q ss_pred HHHHHHHcCCCEEEecchhhh----hhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRI 179 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~m----v~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl 179 (384)
-++.++++|+|.|=+|...++ .-.+++. .+-.|.+..++....+++.. +..+ | ++ .+.+. ++ +.
T Consensus 27 i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~-~~~~-~--~~-~~~~~-i~---~a 94 (263)
T cd07943 27 IARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLG-VLLL-P--GI-GTVDD-LK---MA 94 (263)
T ss_pred HHHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEE-EEec-C--Cc-cCHHH-HH---HH
Confidence 356689999999988843211 1122222 22344555443322333221 1122 2 23 23333 22 33
Q ss_pred HHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 180 LKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 180 ~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
. +.|++.|.+-... ....+.++.+.+.|..|+..+ .. .++. +-+.+++-++.+.++|++.|
T Consensus 95 ~-~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~----~~---------~~~~--~~~~~~~~~~~~~~~G~d~i 158 (263)
T cd07943 95 A-DLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL----MM---------SHMA--SPEELAEQAKLMESYGADCV 158 (263)
T ss_pred H-HcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE----Ee---------ccCC--CHHHHHHHHHHHHHcCCCEE
Confidence 4 6899999986542 345677777788998887642 11 1222 22568888889999999999
Q ss_pred Eec----CC-CH---HHHHHHHhhcCC
Q 016682 257 VLE----CV-PP---PVAAAATSALQI 275 (384)
Q Consensus 257 vlE----~V-p~---ela~~It~~l~I 275 (384)
.+- .. |. ++.+.+.++++.
T Consensus 159 ~l~DT~G~~~P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 159 YVTDSAGAMLPDDVRERVRALREALDP 185 (263)
T ss_pred EEcCCCCCcCHHHHHHHHHHHHHhCCC
Confidence 986 22 43 334445455553
No 359
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.73 E-value=4.6 Score=41.73 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCCCHHHHHHhhhC-CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 77 QRVTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 77 ~~~t~~~lr~~k~~-g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
..+|.++|+.+++. +-||++=..-+...|+.+.++|+|.|.|+-..+-.. |..+.+++.+....+++. -+.+
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~----~~~~a~~~~L~ei~~av~--~~i~- 285 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQL----DGGPAAFDSLQEVAEAVD--KRVP- 285 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCC----CCCCcHHHHHHHHHHHhC--CCCc-
Confidence 35788888877653 468888888889999999999999998887776433 344556665544434331 1234
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
|++| |+. .+..+++ +.+ ..||++|-+-
T Consensus 286 vi~d---GGI-r~g~Dv~----KaL-alGAd~V~ig 312 (367)
T TIGR02708 286 IVFD---SGV-RRGQHVF----KAL-ASGADLVALG 312 (367)
T ss_pred EEee---CCc-CCHHHHH----HHH-HcCCCEEEEc
Confidence 8888 666 4667774 567 4899999983
No 360
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.70 E-value=2.9 Score=41.29 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH-HH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL-KE 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~-ke 182 (384)
.++.++++|+|.+++--. .-...+-++++.|-+.|++.++.|+++=|.| ++..+++... ++. +-
T Consensus 93 ~~~~a~~~Gadav~~~pP---------~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~--g~~l~~~~l~----~L~~~~ 157 (303)
T PRK03620 93 YAQAAERAGADGILLLPP---------YLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD--NAVLTADTLA----RLAERC 157 (303)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC--CCCCCHHHHH----HHHhhC
Confidence 357788999999987422 1224467999999999999999999998865 5667777663 565 22
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||-..+ . ...++.+.+
T Consensus 158 pni~giK~s~~-d--~~~~~~~~~ 178 (303)
T PRK03620 158 PNLVGFKDGVG-D--IELMQRIVR 178 (303)
T ss_pred CCEEEEEeCCC-C--HHHHHHHHH
Confidence 47899999866 2 345555543
No 361
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=89.63 E-value=28 Score=36.09 Aligned_cols=233 Identities=10% Similarity=0.055 Sum_probs=126.4
Q ss_pred HhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhh-cc--CCC----C-cCCCHHHHHHHHHHHHcccCC
Q 016682 86 QKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVV-HG--HDT----T-LPITLEEMLVHCRAVARGAKR 153 (384)
Q Consensus 86 ~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~-lG--~~d----T-~~VtldeMl~h~raV~Rga~~ 153 (384)
..++++--+-..|+|+..+++. +|+...++|+=-....... -| +++ . .-+....+...++.++..++.
T Consensus 21 ~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~V 100 (357)
T TIGR01520 21 YAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGV 100 (357)
T ss_pred HHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 3456778899999999999875 5677999998332222222 22 333 2 223445577777888877877
Q ss_pred CcEEEeCCCC-CCc-CCHHHHHHHHHHHHHHhC---CCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCccc
Q 016682 154 PLLVGDLPFG-TYE-SSTNQAVDTAVRILKEGG---MDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQA 221 (384)
Q Consensus 154 ~~vvaDmPfg-sY~-~s~e~av~nA~rl~keaG---AdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~ 221 (384)
| |+.-|.-| +|+ .-.+++++.....+.++| ...|.+-|.. +|-+...+.++ ..||.|=+=||-.+..
T Consensus 101 P-ValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~ 179 (357)
T TIGR01520 101 P-VVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGE 179 (357)
T ss_pred C-EEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence 7 77777764 221 012344443322233454 9999997763 34444444444 5799998877766532
Q ss_pred cccc-CCc---cccCCCHHHHHHHHHHHHHHHHcCCcEEEe-----------c--CCCHHHHHHH----HhhcCCC----
Q 016682 222 ISVL-GGF---RPQGKNVTSAVKVVETALALQEVGCFSVVL-----------E--CVPPPVAAAA----TSALQIP---- 276 (384)
Q Consensus 222 ~~~l-gGf---rvqGrt~~~a~~ll~rAkAleeAGAf~Ivl-----------E--~Vp~ela~~I----t~~l~IP---- 276 (384)
..-. .+- ...=-+.++|.+.+++-- ..-|+|+|=+ . -+.-++.++| .+++++|
T Consensus 180 Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~--~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~ 257 (357)
T TIGR01520 180 EDGVDNSHMDAEALYTQPEDVYYAYEELS--KISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKP 257 (357)
T ss_pred cCCcccccccccccCCCHHHHHHHHHHhc--cCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCC
Confidence 2110 000 000013344444433210 0016666532 1 2346888888 5677888
Q ss_pred E-EEEcCCCCC-CchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 277 T-IGIGAGPFC-SGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 277 t-IGIGAG~~c-DGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
+ +.+-.|+++ |=|+- --=-+|+. | +.-+-++.....+++++|.++
T Consensus 258 ~pLVLHGgSGi~~e~i~-kai~~GI~----------K-INi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 258 LFFVFHGGSGSTKQEIK-EALSYGVV----------K-MNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred CcEEEeCCCCCCHHHHH-HHHHCCCe----------E-EEeCcHHHHHHHHHHHHHHHh
Confidence 1 345444443 33321 11113443 1 344567777778888888754
No 362
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.60 E-value=3.4 Score=42.48 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=66.3
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCC-CcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDT-TLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~d-T~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
+..+|+.. .+..|..=|+=+...|+-+.+||+|++-||=..|.++-=..- +..++.---++.|..+++....| |++|
T Consensus 142 ik~ik~~~-P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvp-iIAD 219 (346)
T PRK05096 142 VAKAREAW-PDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQ-IVSD 219 (346)
T ss_pred HHHHHHhC-CCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCC-EEec
Confidence 44444433 335666778999999999999999999887555544322221 22334455577788888877666 9999
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
|+.. ++.+. .+.+ .+|||+|.|-
T Consensus 220 ---GGi~-~sGDI----~KAl-aaGAd~VMlG 242 (346)
T PRK05096 220 ---GGCT-VPGDV----AKAF-GGGADFVMLG 242 (346)
T ss_pred ---CCcc-cccHH----HHHH-HcCCCEEEeC
Confidence 5553 33444 2456 5899999994
No 363
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=89.60 E-value=15 Score=38.07 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred ceeccCchhhhhh---hhHHHhhhHHHHHHHhhhcccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 016682 10 RVQVAQPKHLFKQ---TQLLVTLTQHYSRILNNSNMSFSRINRARPLLVRCMSNIPENSVYGGPKPQNPNQRVTLTHLRQ 86 (384)
Q Consensus 10 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~~~~~~~~~~t~~~lr~ 86 (384)
+++++-|-++|.. .|+|-.++-..+=|.-...++- ---.+++...+.+. || +.-++-+|+
T Consensus 58 ~v~IayP~~~f~~g~~~~llt~i~GN~~~~~~~~~irL-~D~~~P~~~~~~F~---------GP-------~fGi~G~R~ 120 (366)
T cd08148 58 IVKIAYPVELFEPGNIPQILTVTAGNLFGLGALEAVRL-EDLEFPEEYKKLFP---------GP-------KFGIDGIRK 120 (366)
T ss_pred EEEEEecHHHcCCccHHHHHHHHhchhcccccccceEE-EEeeCCHHHHhcCC---------CC-------CCCchhHHH
Q ss_pred hhh-CCCcEEEEecCCh------HHHHHHHHc---CCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC----
Q 016682 87 KHK-NGEPITMVTAYDY------PSAVHLDSA---GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK---- 152 (384)
Q Consensus 87 ~k~-~g~~I~mlTAyD~------~sA~iae~A---GiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~---- 152 (384)
+.. .++||++-..-=. ..|+++.+. |+|+|=== .+..|.-...++|-+..|..+.+-+.
T Consensus 121 ~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IKDD-------E~l~~q~~~p~~eRv~~~~~a~~~a~~eTG 193 (366)
T cd08148 121 LLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIKDD-------ETLTDQPFCPLRDRITEVAAALDRVQEETG 193 (366)
T ss_pred HhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccccc-------cccCCCCCCcHHHHHHHHHHHHHHHHHhhC
Q ss_pred -CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH--c-CCceeeeccCCcccccccCCc
Q 016682 153 -RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE--A-GIAVMGHVGLTPQAISVLGGF 228 (384)
Q Consensus 153 -~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~--a-GIPV~gHiGLtPQ~~~~lgGf 228 (384)
..+-..++= .+.++-.+++.... +.|+.++.+--. ..=...++.|++ . ++|+++| -.+.
T Consensus 194 ~~~~y~~NiT-----~~~~em~~ra~~~~-~~G~~~~mv~~~-~~G~~~l~~l~~~~~~~l~IhaH----------rA~~ 256 (366)
T cd08148 194 EKKLYAVNVT-----AGTFEIIERAERAL-ELGANMLMVDVL-TAGFSALQALAEDFEIDLPIHVH----------RAMH 256 (366)
T ss_pred CcceEEEEcc-----CCHHHHHHHHHHHH-HhCCCEEEEecc-ccchHHHHHHHHhCcCCcEEEec----------cccc
Q ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhhcCCCEEEE-cCCCCCCchhhhHhhhhcCCC
Q 016682 229 RPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSALQIPTIGI-GAGPFCSGQVLVYHDLLGMMQ 301 (384)
Q Consensus 229 rvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~l~IPtIGI-GAG~~cDGQvLV~~DlLG~~~ 301 (384)
-..-++.......+--+|.+.=+|||.+....+ +.+....+.+.+.-|--+| .+=|-++| |++
T Consensus 257 ga~~~~~~~G~~~~~l~kl~RLaGaD~~~~~t~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sg---------G~~- 326 (366)
T cd08148 257 GAVTRSKFHGISMLVLAKLLRMAGGDFIHTGTVVGKMALEREEALGIADALTDDWAGFKRVFPVASG---------GIH- 326 (366)
T ss_pred cccccCCCCCcCHHHHHHHHHHcCCCccccCCcccCcCCCHHHHHHHHHHHhCcccCCCCceEeccC---------CCC-
Q ss_pred CCCCCCCCcchhhhhhh
Q 016682 302 HPHHAKVTPKFCKQFAR 318 (384)
Q Consensus 302 ~P~~~~~~PkFvk~y~~ 318 (384)
....|.+.+.|.+
T Consensus 327 ----~~~vp~~~~~~G~ 339 (366)
T cd08148 327 ----PGLVPGILRDFGI 339 (366)
T ss_pred ----hhHHHHHHHHhCC
No 364
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.56 E-value=2.3 Score=42.28 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=67.6
Q ss_pred EEEEecCCh----HHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCC-CCcCC
Q 016682 94 ITMVTAYDY----PSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFG-TYESS 168 (384)
Q Consensus 94 I~mlTAyD~----~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfg-sY~~s 168 (384)
|+-+++.+. .-|+.+++.|+|.|++- -|.-..-+.+++..|-++|++.++.|+++=+.|.- ++..+
T Consensus 77 iaG~g~~~t~eai~lak~a~~~Gad~il~v---------~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~ 147 (299)
T COG0329 77 IAGVGSNSTAEAIELAKHAEKLGADGILVV---------PPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLS 147 (299)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCEEEEe---------CCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCC
Confidence 344556544 34678899999999853 13334556899999999999999999999999952 33345
Q ss_pred HHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH
Q 016682 169 TNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 169 ~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
++.. .|+.+-....|||-..|. ...++.+..
T Consensus 148 ~e~i----~~la~~~nivgiKd~~gd---~~~~~~~~~ 178 (299)
T COG0329 148 PETI----ARLAEHPNIVGVKDSSGD---LDRLEEIIA 178 (299)
T ss_pred HHHH----HHHhcCCCEEEEEeCCcC---HHHHHHHHH
Confidence 5554 456543478999998882 444555543
No 365
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=89.53 E-value=24 Score=35.19 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=109.0
Q ss_pred HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEE
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVG 158 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vva 158 (384)
|+..++++--|-..|+||..+++. +++.+.++|+ +.-+..-. + .++.+...+++.++.++.| |..
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~-~--------~~~~~~~~~~~~a~~~~vP-Val 78 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKY-M--------GLEYLAAMVKAAAEEASVP-VAL 78 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHH-H--------HHHHHHHHHHHHHHHSTSE-EEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhh-h--------hHHHHHHHHHHHHHHcCCC-EEe
Confidence 455567788999999999999864 6788999997 43222222 1 6677788888888888877 565
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchH----HHHHHHHHcCCceeeeccCCcccccccCCccc-
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRI----TAARGIVEAGIAVMGHVGLTPQAISVLGGFRP- 230 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~----~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrv- 230 (384)
-+.- +. +.+.. .+.+ +.|.+.|.+-|.. +|-. +.++.+...||.|=|=||-...... |...
T Consensus 79 HLDH-~~--~~e~i----~~ai-~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed---~~~~~ 147 (287)
T PF01116_consen 79 HLDH-GK--DFEDI----KRAI-DAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKED---GIESE 147 (287)
T ss_dssp EEEE-E---SHHHH----HHHH-HHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCT---TCSSS
T ss_pred eccc-CC--CHHHH----HHHH-HhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCC---Ccccc
Confidence 5554 22 33333 4666 4799999997763 3333 3444444689999887776553211 1111
Q ss_pred ----cCCC-HHHHHHHHHHHHHHHHcCCcEEEe---------cC-----CCHHHHHHHHhhc-CCCEEEEcCCCC-CCch
Q 016682 231 ----QGKN-VTSAVKVVETALALQEVGCFSVVL---------EC-----VPPPVAAAATSAL-QIPTIGIGAGPF-CSGQ 289 (384)
Q Consensus 231 ----qGrt-~~~a~~ll~rAkAleeAGAf~Ivl---------E~-----Vp~ela~~It~~l-~IPtIGIGAG~~-cDGQ 289 (384)
.--| .+++.+. +++-|+|+|=+ .. +.-++.++|.+.+ ++|+. +-.|++ .|=|
T Consensus 148 ~~~~~~~TdP~~a~~F------v~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLV-lHGgSG~~~e~ 220 (287)
T PF01116_consen 148 EETESLYTDPEEAKEF------VEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLV-LHGGSGLPDEQ 220 (287)
T ss_dssp TT-TTCSSSHHHHHHH------HHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEE-ESSCTTS-HHH
T ss_pred ccccccccCHHHHHHH------HHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEE-EECCCCCCHHH
Confidence 1122 3343333 36789999864 22 3478999999999 99965 544444 3434
Q ss_pred hh
Q 016682 290 VL 291 (384)
Q Consensus 290 vL 291 (384)
+-
T Consensus 221 ~~ 222 (287)
T PF01116_consen 221 IR 222 (287)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 366
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=89.44 E-value=12 Score=38.23 Aligned_cols=137 Identities=19% Similarity=0.258 Sum_probs=88.0
Q ss_pred HHHHHHHHHcccCCCcEEEeCCCCCCc------------CCH----HHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHH
Q 016682 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SST----NQAVDTAVRILKEGGMDAIKLEGGSPSRITAARG 203 (384)
Q Consensus 140 Ml~h~raV~Rga~~~~vvaDmPfgsY~------------~s~----e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~a 203 (384)
+...++.|++..|.-+|++|.=+-.|. .+. +...+.|.... ++|||.|--.|=-+-++..||.
T Consensus 96 v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A-~AGADiVAPSdMMDGrV~aIR~ 174 (320)
T cd04823 96 VCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDGGILNDETVEVLCKQALVQA-EAGADIVAPSDMMDGRIGAIRE 174 (320)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCCcCcCHHHHHHHHHHHHHHH-HhCCCEEEcccchhhHHHHHHH
Confidence 456678888888888888998654442 122 23344455555 6999999876532234555555
Q ss_pred HHH-cCCceeeeccCCcccc---cc-cCCcccc-------C-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 016682 204 IVE-AGIAVMGHVGLTPQAI---SV-LGGFRPQ-------G-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (384)
Q Consensus 204 lv~-aGIPV~gHiGLtPQ~~---~~-lgGfrvq-------G-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp-~ 263 (384)
..+ +|. .|+++++=+. +. .|=||-- | | +.....+.++.+..=.+=|||+|.+. +.| -
T Consensus 175 aLd~~g~---~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~YL 251 (320)
T cd04823 175 ALDAEGF---TNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMPYL 251 (320)
T ss_pred HHHHCCC---CCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 444 452 3344444222 21 1223221 2 1 12334788888888899999999886 778 8
Q ss_pred HHHHHHHhhcCCCEEEE
Q 016682 264 PVAAAATSALQIPTIGI 280 (384)
Q Consensus 264 ela~~It~~l~IPtIGI 280 (384)
++++.+.++.++|+...
T Consensus 252 DIi~~~k~~~~lPvaaY 268 (320)
T cd04823 252 DIIRRVKDEFGVPTFAY 268 (320)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 99999999999999876
No 367
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=89.37 E-value=10 Score=38.64 Aligned_cols=137 Identities=18% Similarity=0.303 Sum_probs=88.0
Q ss_pred HHHHHHHHHcccCCCcEEEeCCCCCCc------------CCHH----HHHHHHHHHHHHhCCCEEEeCCCccchHHHHHH
Q 016682 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SSTN----QAVDTAVRILKEGGMDAIKLEGGSPSRITAARG 203 (384)
Q Consensus 140 Ml~h~raV~Rga~~~~vvaDmPfgsY~------------~s~e----~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~a 203 (384)
+...++.++...|.-+|++|.=+-.|. .+.+ ...+-|.... ++|||.|--.|=.+-++..||.
T Consensus 101 v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A-~AGADiVAPSdMMDGrV~aIR~ 179 (322)
T PRK13384 101 LARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDNDATVENLVKQSVTAA-KAGADMLAPSAMMDGQVKAIRQ 179 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeeeecccCCCCCceeeccCCcCccHHHHHHHHHHHHHHH-HcCCCeEecccccccHHHHHHH
Confidence 356678888888988899998554441 1223 3334444555 6999999877532335556665
Q ss_pred HHH-cCCceeeeccCCcccc---cc-cCCccc------cC-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-HH
Q 016682 204 IVE-AGIAVMGHVGLTPQAI---SV-LGGFRP------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-PP 264 (384)
Q Consensus 204 lv~-aGIPV~gHiGLtPQ~~---~~-lgGfrv------qG-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp-~e 264 (384)
..+ +|. .|+++.+=+. +. .|=||- +| | +....++.++.+..=.+=|||+|.+. +.| -+
T Consensus 180 aLd~~g~---~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLD 256 (322)
T PRK13384 180 GLDAAGF---EHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLD 256 (322)
T ss_pred HHHHCCC---CCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHH
Confidence 554 452 3444444222 21 122221 12 1 12334788888888889999999886 778 89
Q ss_pred HHHHHHhhcCCCEEEE
Q 016682 265 VAAAATSALQIPTIGI 280 (384)
Q Consensus 265 la~~It~~l~IPtIGI 280 (384)
+++.+.+.+.+|+...
T Consensus 257 Ii~~~k~~~~lPvaaY 272 (322)
T PRK13384 257 VLSRLRQETHLPLAAY 272 (322)
T ss_pred HHHHHHhccCCCEEEE
Confidence 9999999999999876
No 368
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.35 E-value=17 Score=35.30 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=77.3
Q ss_pred HHHhhhCCCcEEE--EecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 84 LRQKHKNGEPITM--VTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 84 lr~~k~~g~~I~m--lTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
|+++.++|++... ++-.+...+.++..+|+|.+++= ---.+++++++..+++++.. ...+ .++=+|
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD----------~EHg~~~~~~~~~~~~a~~~-~g~~-~~VRvp 70 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLD----------GEHAPNDVLTFIPQLMALKG-SASA-PVVRPP 70 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEe----------cccCCCCHHHHHHHHHHHhh-cCCC-cEEECC
Confidence 6777778887543 56778889999999999999873 11237788999888888754 3333 345557
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceeeeccCCc
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMGHVGLTP 219 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~gHiGLtP 219 (384)
.. ++... .|.+ +.||++|-+-- -+.++-.+++++ ..-|-.|.=|+.|
T Consensus 71 ~~----~~~~i----~r~L-D~Ga~gIivP~--v~taeea~~~v~a~kypP~G~Rg~~~ 118 (249)
T TIGR03239 71 WN----EPVII----KRLL-DIGFYNFLIPF--VESAEEAERAVAATRYPPEGIRGVSV 118 (249)
T ss_pred CC----CHHHH----HHHh-cCCCCEEEecC--cCCHHHHHHHHHHcCCCCCCcCCCCc
Confidence 53 33333 5778 79999998854 345666777764 4566666666655
No 369
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=89.30 E-value=14 Score=39.22 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=92.8
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE-EEeCCCCCCcCCHH
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL-VGDLPFGTYESSTN 170 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v-vaDmPfgsY~~s~e 170 (384)
..=+++-++|...+..+-++|.++|.| .+...-|++-=+..+..+....|...+ |+ + +|. .+++
T Consensus 159 Gl~~lvEvh~~~El~~al~~~a~iiGi-----------NnRdL~t~~vd~~~~~~l~~~ip~~~~~vs--e-SGI-~t~~ 223 (454)
T PRK09427 159 NMGVLTEVSNEEELERAIALGAKVIGI-----------NNRNLRDLSIDLNRTRELAPLIPADVIVIS--E-SGI-YTHA 223 (454)
T ss_pred CCcEEEEECCHHHHHHHHhCCCCEEEE-----------eCCCCccceECHHHHHHHHhhCCCCcEEEE--e-CCC-CCHH
Confidence 344566777777777777777666544 444444444445566666666654433 44 2 366 4888
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCC----ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 171 QAVDTAVRILKEGGMDAIKLEGG----SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLEgg----~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
++. ++ +. |+|||-+ |. .+.....++.+....|.+||- ++ .++++
T Consensus 224 d~~----~~-~~-~~davLi-G~~lm~~~d~~~~~~~L~~~~vKICGi------------------t~-------~eda~ 271 (454)
T PRK09427 224 QVR----EL-SP-FANGFLI-GSSLMAEDDLELAVRKLILGENKVCGL------------------TR-------PQDAK 271 (454)
T ss_pred HHH----HH-Hh-cCCEEEE-CHHHcCCCCHHHHHHHHhccccccCCC------------------CC-------HHHHH
Confidence 873 33 44 6999976 42 145567788888877888852 12 45788
Q ss_pred HHHHcCCcEEEe---cC----CCHHHHHHHHhhcCCCEEEEcCCC
Q 016682 247 ALQEVGCFSVVL---EC----VPPPVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 247 AleeAGAf~Ivl---E~----Vp~ela~~It~~l~IPtIGIGAG~ 284 (384)
+..++|||.|=+ +. |+.+.++.|.+.+++.++|.=..+
T Consensus 272 ~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~ 316 (454)
T PRK09427 272 AAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNA 316 (454)
T ss_pred HHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCC
Confidence 888899997633 32 448889999998886666554333
No 370
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=89.25 E-value=5.1 Score=40.91 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCcEEEecCC--------CHHHHHHHHhhcCCCEEEEcCCCCC-CchhhhH---hhhhcCCCCCCCCCC
Q 016682 241 VVETALALQEVGCFSVVLECV--------PPPVAAAATSALQIPTIGIGAGPFC-SGQVLVY---HDLLGMMQHPHHAKV 308 (384)
Q Consensus 241 ll~rAkAleeAGAf~IvlE~V--------p~ela~~It~~l~IPtIGIGAG~~c-DGQvLV~---~DlLG~~~~P~~~~~ 308 (384)
.++-++.|+++|+|.|-+-+- +.+.+++|.+.+++|+++-|. -.. ...-++- -|++|+.. |- -.
T Consensus 251 ~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~V~~gR-~~--ia 326 (362)
T PRK10605 251 ALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDAVAFGR-DY--IA 326 (362)
T ss_pred HHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCEEEECH-Hh--hh
Confidence 577788889999998866532 356788899999999886653 210 1111121 47888863 11 12
Q ss_pred Ccchhhhhhhh
Q 016682 309 TPKFCKQFARV 319 (384)
Q Consensus 309 ~PkFvk~y~~~ 319 (384)
-|-|+++..+.
T Consensus 327 dPd~~~k~~~g 337 (362)
T PRK10605 327 NPDLVARLQRK 337 (362)
T ss_pred CccHHHHHhcC
Confidence 37777776654
No 371
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=89.25 E-value=5.9 Score=37.95 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHHHHHHHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll 242 (384)
++++..+.+.+.+ +.|..++|+--|. ++-.++|++++++ +++++- ..- +|-| .++++
T Consensus 85 ~~~~~~~~~~~~~-~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~~l~v---------Dan-----~~~~---~~~a~ 146 (265)
T cd03315 85 EPAEVAEEARRAL-EAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRV---------DAN-----RGWT---PKQAI 146 (265)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEE---------eCC-----CCcC---HHHHH
Confidence 6788888888877 5799999997542 2456778888864 333331 111 2234 34566
Q ss_pred HHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcCCCEE
Q 016682 243 ETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTI 278 (384)
Q Consensus 243 ~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~IPtI 278 (384)
+-++++++.|.+.|.-++.+ .+..++|++.+++|+.
T Consensus 147 ~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia 184 (265)
T cd03315 147 RALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIM 184 (265)
T ss_pred HHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEE
Confidence 77788888888776644444 5778899999999977
No 372
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=89.23 E-value=12 Score=38.23 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=80.0
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|+|.|=+|... . +-+| .+.++.+..-...+-|.+=.. .+.++ ++ +.+ ++
T Consensus 27 ia~~L~~~Gv~~IEvG~p~---------~---~~~~-~e~i~~i~~~~~~~~v~~~~r-----~~~~d-i~---~a~-~~ 83 (363)
T TIGR02090 27 IARKLDELGVDVIEAGFPI---------A---SEGE-FEAIKKISQEGLNAEICSLAR-----ALKKD-ID---KAI-DC 83 (363)
T ss_pred HHHHHHHcCCCEEEEeCCC---------C---ChHH-HHHHHHHHhcCCCcEEEEEcc-----cCHHH-HH---HHH-Hc
Confidence 3667899999999887432 1 1122 344555654444554443332 23333 22 333 78
Q ss_pred CCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+-... +.+.+.|+.+.+.|..|+.. +.. -+|+ .-+.+++-++
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~----~ed---------a~r~--~~~~l~~~~~ 148 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS----AED---------ATRT--DIDFLIKVFK 148 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE----Eee---------cCCC--CHHHHHHHHH
Confidence 99999995431 23446777777889888643 211 1343 2456777788
Q ss_pred HHHHcCCcEEEec-CC----CH---HHHHHHHhhcCCCE
Q 016682 247 ALQEVGCFSVVLE-CV----PP---PVAAAATSALQIPT 277 (384)
Q Consensus 247 AleeAGAf~IvlE-~V----p~---ela~~It~~l~IPt 277 (384)
++.++|++.|.+- .+ |. ++++.|.+.+++|+
T Consensus 149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l 187 (363)
T TIGR02090 149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPI 187 (363)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceE
Confidence 8889999999875 22 53 34445545555553
No 373
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=89.09 E-value=23 Score=35.96 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHcCCCEEE--ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 106 VHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 106 ~iae~AGiD~Il--VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
.+.|+.|..+++ +||+. +.|......|...++.| ++-|-+ .-++++.|.+..+|.
T Consensus 63 elsd~tg~p~~~~v~~~~~---------------eam~k~I~~v~~~~d~P-l~IDSt-------~p~a~eaaLk~~~e~ 119 (308)
T PRK00979 63 ELSDKTGNPALLDVVGESP---------------EAMEKYIDFVSEITDLP-FLIDST-------SPEARIAAAKYATEL 119 (308)
T ss_pred HHHHHhCCCeEEEEecChH---------------HHHHHHHHHHHhcCCCC-EEEeCC-------CHHHHHHHHHHhhhc
Confidence 466788999885 88776 56667777776666656 555543 236778888888776
Q ss_pred C------CCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHH---------HHHH
Q 016682 184 G------MDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET---------ALAL 248 (384)
Q Consensus 184 G------AdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~r---------AkAl 248 (384)
| .+.|+.|.+ + +.+..+.+.|+..+.=+.+.|. .. |.++-.+++++ ....
T Consensus 120 G~~gR~IiNSIn~e~~-~---eel~llk~yg~aavIvLa~d~~---------~p--t~e~Rl~i~~~~~~~~~~gll~~a 184 (308)
T PRK00979 120 GLADRAIYNSINPSIE-E---EEIEALKESDIKAAIVLAFDPM---------DP--SVEGRLKMLEEGGKGQDKGMLPLA 184 (308)
T ss_pred CCCCceEEEeccCCCC-H---HHHHHHHHhCCceEEEEEcCCC---------CC--CHHHHHHHHHhccccchHHHHHHH
Confidence 6 357888876 3 4588999999773322333331 22 66666667776 4555
Q ss_pred HHcCCcEEEecCC--C-------HHHHHHHHhhcCCCEE
Q 016682 249 QEVGCFSVVLECV--P-------PPVAAAATSALQIPTI 278 (384)
Q Consensus 249 eeAGAf~IvlE~V--p-------~ela~~It~~l~IPtI 278 (384)
++.|..-+++.+. | -+.++.|.+++++||.
T Consensus 185 ~~~GI~diliDplVlpvs~~~~tl~aI~~iK~~~G~pt~ 223 (308)
T PRK00979 185 EEAGIERPLVDTAVTPLPGSGAAIRAIFAVKAKFGYPVG 223 (308)
T ss_pred HHcCCCcEEeccCCCcCccHHHHHHHHHHHHHHcCCCeE
Confidence 8999988888753 3 3567778888999976
No 374
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.98 E-value=5.9 Score=40.40 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCHHHHHHhhhC-CCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHc--ccCCCc
Q 016682 79 VTLTHLRQKHKN-GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR--GAKRPL 155 (384)
Q Consensus 79 ~t~~~lr~~k~~-g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~R--ga~~~~ 155 (384)
.+..++..+++. +.||++=++-+.-.|+.+.++|+|.|.|....|+.. |+..-|++ .+..++...+ +-+.+
T Consensus 200 ~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~----d~~~~~~~-~L~~i~~~~~~~~~~~~- 273 (344)
T cd02922 200 LTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL----DTAPAPIE-VLLEIRKHCPEVFDKIE- 273 (344)
T ss_pred CCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC----CCCCCHHH-HHHHHHHHHHHhCCCce-
Confidence 567777777653 358888899999999999999999998877776653 22222333 2322333221 12334
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|++| |+. .+..+++ +.+ ..||++|-+
T Consensus 274 vi~~---GGI-r~G~Dv~----kal-aLGA~aV~i 299 (344)
T cd02922 274 VYVD---GGV-RRGTDVL----KAL-CLGAKAVGL 299 (344)
T ss_pred EEEe---CCC-CCHHHHH----HHH-HcCCCEEEE
Confidence 8888 677 4666763 566 589999998
No 375
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=88.93 E-value=21 Score=35.47 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=95.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
-+.-|++.+++=.--++.-..|...+..+.+. +|+|-+|--+.- + .|++ +++.+ ++.| |..=
T Consensus 61 GL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~r------n------~~LL---~a~g~-t~kp-V~lK 122 (258)
T TIGR01362 61 GLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCR------Q------TDLL---VAAAK-TGRI-VNVK 122 (258)
T ss_pred HHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcc------h------HHHH---HHHhc-cCCe-EEec
Confidence 45566665554444466678999999999888 999999943311 1 2444 44444 4555 3333
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------cchHHHHHHHHHcCCceeeeccCCcccccccCCcc
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFR 229 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfr 229 (384)
=++ + .++++-+-.|.+++.++.-+.+-+|-|. -...+.++ +.+.||+ +-|.+..+..|-
T Consensus 123 rG~--~-~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k---~~~~PVi----~DpSHsvq~pg~- 191 (258)
T TIGR01362 123 KGQ--F-LSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMR---ELGCPVI----FDATHSVQQPGG- 191 (258)
T ss_pred CCC--c-CCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHH---hcCCCEE----EeCCccccCCCC-
Confidence 222 3 6899888878787754445677788773 11233343 4489998 456554333331
Q ss_pred ccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 016682 230 PQGKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (384)
Q Consensus 230 vqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp 262 (384)
.-|.+.-..+-+..-|+|-..+|||+|++|.=|
T Consensus 192 ~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHp 224 (258)
T TIGR01362 192 LGGASGGLREFVPTLARAAVAVGIDGLFMETHP 224 (258)
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 112222233455666888899999999999765
No 376
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=88.82 E-value=17 Score=36.72 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=50.1
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
..+.++..+.|++-++=.... -...+.. .-+++..+...+.|++.++.|+++=-.+|| .+.+.+ +.++++
T Consensus 133 ~~~~i~~i~adal~i~ln~~q-~~~~p~g-~~~f~~~le~i~~i~~~~~vPVivK~~g~g---~~~~~a-----~~L~~a 202 (333)
T TIGR02151 133 AQEAIDMIEADALAIHLNVLQ-ELVQPEG-DRNFKGWLEKIAEICSQLSVPVIVKEVGFG---ISKEVA-----KLLADA 202 (333)
T ss_pred HHHHHHHhcCCCEEEcCcccc-cccCCCC-CcCHHHHHHHHHHHHHhcCCCEEEEecCCC---CCHHHH-----HHHHHc
Confidence 556677778888866521111 1122222 234677888999999998888666333442 355444 445589
Q ss_pred CCCEEEeCCC
Q 016682 184 GMDAIKLEGG 193 (384)
Q Consensus 184 GAdaVKLEgg 193 (384)
|+|+|.+-|.
T Consensus 203 Gvd~I~Vsg~ 212 (333)
T TIGR02151 203 GVSAIDVAGA 212 (333)
T ss_pred CCCEEEECCC
Confidence 9999999763
No 377
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=88.82 E-value=17 Score=33.39 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=73.7
Q ss_pred cEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHH
Q 016682 93 PITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQA 172 (384)
Q Consensus 93 ~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~a 172 (384)
+|-.-|..|--.+..+.++|.|.|.++.+. .+.+..++. ...+ ++. +. .|++++
T Consensus 57 ~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~---------------~~~~~~~~~----~~~~-~i~-----gv-~t~~e~ 110 (190)
T cd00452 57 LIGAGTVLTPEQADAAIAAGAQFIVSPGLD---------------PEVVKAANR----AGIP-LLP-----GV-ATPTEI 110 (190)
T ss_pred EEEEEeCCCHHHHHHHHHcCCCEEEcCCCC---------------HHHHHHHHH----cCCc-EEC-----Cc-CCHHHH
Confidence 445557888999999999999999755322 345444442 2333 332 44 278887
Q ss_pred HHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHH
Q 016682 173 VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (384)
Q Consensus 173 v~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAlee 250 (384)
. +.+ +.|||.|++--....-.+.++.+... .+|++ ..||. | .+.+..|.+
T Consensus 111 ~----~A~-~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~-----------a~GGI-----~-------~~n~~~~~~ 162 (190)
T cd00452 111 M----QAL-ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFM-----------PTGGV-----S-------LDNAAEWLA 162 (190)
T ss_pred H----HHH-HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEE-----------EeCCC-----C-------HHHHHHHHH
Confidence 4 345 58999999953323345667777652 47776 34543 3 246778899
Q ss_pred cCCcEEEecC
Q 016682 251 VGCFSVVLEC 260 (384)
Q Consensus 251 AGAf~IvlE~ 260 (384)
+||+++.+=.
T Consensus 163 ~G~~~v~v~s 172 (190)
T cd00452 163 AGVVAVGGGS 172 (190)
T ss_pred CCCEEEEEch
Confidence 9999988654
No 378
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.72 E-value=20 Score=33.50 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=86.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhh----hhccCCCCcCCCHHHHHHHHHHHHccc
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~m----v~lG~~dT~~VtldeMl~h~raV~Rga 151 (384)
.+..+.+...+ .++.+++-++...-+. +.++|+|.+-+-+++.- ..++. +..-.++.+...++..+. .
T Consensus 45 ~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~--~~~~~~~~~~~~v~~ak~-~ 120 (237)
T PF00682_consen 45 QVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNK--SREEALERIEEAVKYAKE-L 120 (237)
T ss_dssp HHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCS--HHHHHHHHHHHHHHHHHH-T
T ss_pred Hhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcC--CHHHHHHHHHHHHHHHHh-c
Confidence 45666666655 6777777666655444 34599999966555533 33322 111113333333333322 2
Q ss_pred CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C-CceeeeccCCcccccc
Q 016682 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G-IAVMGHVGLTPQAISV 224 (384)
Q Consensus 152 ~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G-IPV~gHiGLtPQ~~~~ 224 (384)
... +...++..+. .+++..++.+.++. +.|++.|.|-|.. .+..+.|+++.+. + +|+--| ..+-
T Consensus 121 g~~-v~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H------~Hnd 191 (237)
T PF00682_consen 121 GYE-VAFGCEDASR-TDPEELLELAEALA-EAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFH------AHND 191 (237)
T ss_dssp TSE-EEEEETTTGG-SSHHHHHHHHHHHH-HHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEE------EBBT
T ss_pred CCc-eEeCcccccc-ccHHHHHHHHHHHH-HcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEE------ecCC
Confidence 222 4566665443 68888888777766 7899999999852 4566777777763 3 555555 2233
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 225 lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
+| + .+.-+.+-.+|||+.|
T Consensus 192 ~G-l------------a~An~laA~~aGa~~i 210 (237)
T PF00682_consen 192 LG-L------------AVANALAALEAGADRI 210 (237)
T ss_dssp TS--------------HHHHHHHHHHTT-SEE
T ss_pred cc-c------------hhHHHHHHHHcCCCEE
Confidence 32 1 2445666778999875
No 379
>PLN02858 fructose-bisphosphate aldolase
Probab=88.71 E-value=58 Score=39.28 Aligned_cols=183 Identities=17% Similarity=0.252 Sum_probs=111.0
Q ss_pred CCCCHHHHHHh-hhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc
Q 016682 77 QRVTLTHLRQK-HKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 77 ~~~t~~~lr~~-k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga 151 (384)
.++|..++.+. ++++--+-..|+||..+++. +|+.+.++|+--.....-..| ++ +...++..++.+
T Consensus 1098 ~~v~~~~~l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~--------~~-~~~~~~~~a~~~ 1168 (1378)
T PLN02858 1098 ARSSTKELLLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG--------IP-LVSCCIAAAEQA 1168 (1378)
T ss_pred CCccHHHHHHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC--------HH-HHHHHHHHHHHC
Confidence 35777776654 45667899999999999875 577899999843222222222 33 555556666667
Q ss_pred CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHH----HcCCceeeeccCCcccccc
Q 016682 152 KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIV----EAGIAVMGHVGLTPQAISV 224 (384)
Q Consensus 152 ~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~ 224 (384)
+.| |+.-+..| + +.+.. .+.+ +.|.+.|.+-|.. +|.+...+.++ ..||+|=+=||-..-...-
T Consensus 1169 ~vp-V~lHLDHg-~--~~~~i----~~ai-~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~ 1239 (1378)
T PLN02858 1169 SVP-ITVHFDHG-T--SKHEL----LEAL-ELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDG 1239 (1378)
T ss_pred CCC-EEEECCCC-C--CHHHH----HHHH-HhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCC
Confidence 777 77777753 2 44443 4566 5899999997763 44444444444 5799997766655422111
Q ss_pred c--CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec-------------CCCHHHHHHHHhhc---CCCEEEEcCC
Q 016682 225 L--GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE-------------CVPPPVAAAATSAL---QIPTIGIGAG 283 (384)
Q Consensus 225 l--gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE-------------~Vp~ela~~It~~l---~IPtIGIGAG 283 (384)
. ......-.+.++|.+.++ +-|+|++=+= .+.-++.++|.+.+ +||+.-=|+.
T Consensus 1240 ~~~~~~~~~~T~p~~a~~Fv~------~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgS 1310 (1378)
T PLN02858 1240 LTVEEYEAKLTDVDQAKEFID------ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGAS 1310 (1378)
T ss_pred ccccccccCCCCHHHHHHHHH------hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCC
Confidence 0 001011123344444443 3588877531 23467999999999 7996544433
No 380
>PRK00915 2-isopropylmalate synthase; Validated
Probab=88.69 E-value=12 Score=40.12 Aligned_cols=137 Identities=16% Similarity=0.171 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|||.|=+|.-. ..+-.++ .++.+++..+.+-+.+=.. .. ..-++.+.+.++++
T Consensus 31 ia~~L~~~Gv~~IE~G~p~---------~s~~d~~----~v~~i~~~~~~~~i~a~~r-----~~-~~did~a~~a~~~~ 91 (513)
T PRK00915 31 IAKQLERLGVDVIEAGFPA---------SSPGDFE----AVKRIARTVKNSTVCGLAR-----AV-KKDIDAAAEALKPA 91 (513)
T ss_pred HHHHHHHcCCCEEEEcCCC---------CChHHHH----HHHHHHhhCCCCEEEEEcc-----CC-HHHHHHHHHHhhcC
Confidence 4677999999999888422 1222233 3355544444443332211 12 23366666777778
Q ss_pred CCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+-... +...+.|+.+.+.|..|+ +.+.. -+|++ -+.+++-++
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~----f~~ed---------~~r~d--~~~l~~~~~ 156 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE----FSAED---------ATRTD--LDFLCRVVE 156 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE----EEeCC---------CCCCC--HHHHHHHHH
Confidence 99889887652 113467777778898875 22221 12443 456777888
Q ss_pred HHHHcCCcEEEec-----CCCH---HHHHHHHhhcC
Q 016682 247 ALQEVGCFSVVLE-----CVPP---PVAAAATSALQ 274 (384)
Q Consensus 247 AleeAGAf~IvlE-----~Vp~---ela~~It~~l~ 274 (384)
++.++||+.|.|. +.|. ++++.+.+.++
T Consensus 157 ~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~ 192 (513)
T PRK00915 157 AAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVP 192 (513)
T ss_pred HHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCC
Confidence 8899999999876 2253 34445555554
No 381
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.67 E-value=3.5 Score=40.26 Aligned_cols=89 Identities=18% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCcEEEEecCChH----HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC-CCC
Q 016682 91 GEPITMVTAYDYP----SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF-GTY 165 (384)
Q Consensus 91 g~~I~mlTAyD~~----sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf-gsY 165 (384)
++.|+-+++.+.. .|+.++++|+|.+++--.. | ..+.+-+++..|.+.|+. +.|+++=|.|. -++
T Consensus 66 ~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~------y--~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~ 135 (279)
T cd00953 66 DKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPY------Y--FPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGY 135 (279)
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc------C--CCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCC
Confidence 3455555555442 5788899999999875322 1 112356899999999999 79999999995 346
Q ss_pred cCCHHHHHHHHHHHHHH-hCCCEEEeCCC
Q 016682 166 ESSTNQAVDTAVRILKE-GGMDAIKLEGG 193 (384)
Q Consensus 166 ~~s~e~av~nA~rl~ke-aGAdaVKLEgg 193 (384)
..+++.. .|+.++ -...+||-..+
T Consensus 136 ~l~~~~l----~~L~~~~p~vvgiK~s~~ 160 (279)
T cd00953 136 DINARMA----KEIKKAGGDIIGVKDTNE 160 (279)
T ss_pred CCCHHHH----HHHHhcCCCEEEEEeCcc
Confidence 6777755 467754 47899998876
No 382
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=88.62 E-value=11 Score=37.90 Aligned_cols=132 Identities=23% Similarity=0.366 Sum_probs=85.3
Q ss_pred hHHHHHHHHcCCCEE-E-ecchhhh-hhccCCCCcCCCHHHHHHHHHHHHcccC-CCcEEEeCCCCCCcCCHH-HHHHHH
Q 016682 102 YPSAVHLDSAGIDIC-L-VGDSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAK-RPLLVGDLPFGTYESSTN-QAVDTA 176 (384)
Q Consensus 102 ~~sA~iae~AGiD~I-l-VGDSl~m-v~lG~~dT~~VtldeMl~h~raV~Rga~-~~~vvaDmPfgsY~~s~e-~av~nA 176 (384)
+..|+++++.|+|.| | +|=-.-- +--|.-+.+.-..+-+.+.+++++.+++ .| |.+=+=- ++ .+.+ .+.+.+
T Consensus 82 ~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iP-VTVKiRl-G~-d~~~~~~~~ia 158 (323)
T COG0042 82 AEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIP-VTVKIRL-GW-DDDDILALEIA 158 (323)
T ss_pred HHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCC-eEEEEec-cc-CcccccHHHHH
Confidence 457889999999998 4 6632222 3345556666777788888899999985 67 6655553 44 1222 344444
Q ss_pred HHHHHHhCCCEEEeCCCc-------cchHHHHHHHHH-cC-CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 177 VRILKEGGMDAIKLEGGS-------PSRITAARGIVE-AG-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~-aG-IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
+.++++|++++-+=|-+ +...+.|+.+.+ .. |||+++ |+. +|.+++.+.
T Consensus 159 -~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~N-----------GdI----~s~~~a~~~------ 216 (323)
T COG0042 159 -RILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIAN-----------GDI----KSLEDAKEM------ 216 (323)
T ss_pred -HHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeC-----------CCc----CCHHHHHHH------
Confidence 55668999999997632 234677888775 34 999976 221 354444443
Q ss_pred HHHcCCcEEEe
Q 016682 248 LQEVGCFSVVL 258 (384)
Q Consensus 248 leeAGAf~Ivl 258 (384)
++.-|||+|.+
T Consensus 217 l~~tg~DgVMi 227 (323)
T COG0042 217 LEYTGADGVMI 227 (323)
T ss_pred HHhhCCCEEEE
Confidence 44568999886
No 383
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=88.51 E-value=33 Score=35.47 Aligned_cols=229 Identities=11% Similarity=0.073 Sum_probs=127.5
Q ss_pred HHHhhhCCCcEEEEecCChHHHHH----HHHcCCCEEE-ecchhhhhhcc---CCCC----cCCCHHHHHHHHHHHHccc
Q 016682 84 LRQKHKNGEPITMVTAYDYPSAVH----LDSAGIDICL-VGDSAAMVVHG---HDTT----LPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 84 lr~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~Il-VGDSl~mv~lG---~~dT----~~VtldeMl~h~raV~Rga 151 (384)
|...++++--+-..|+|++.+++. +|+...++|+ +..+.. ..+| +++- .-.....+...++..++.+
T Consensus 13 L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 91 (350)
T PRK09197 13 FDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGA-AFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY 91 (350)
T ss_pred HHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 555667888999999999999875 5777999998 433332 2223 2220 1112223667777888888
Q ss_pred CCCcEEEeCCCC-C--CcCCHHHHHHHHHHHHHH---hCCCEEEeCCCc---cchHHH----HHHHHHcCCceeeeccCC
Q 016682 152 KRPLLVGDLPFG-T--YESSTNQAVDTAVRILKE---GGMDAIKLEGGS---PSRITA----ARGIVEAGIAVMGHVGLT 218 (384)
Q Consensus 152 ~~~~vvaDmPfg-s--Y~~s~e~av~nA~rl~ke---aGAdaVKLEgg~---~e~~~~----I~alv~aGIPV~gHiGLt 218 (384)
+.| |+.-+.-| + | ....++++...+.+++ .|...|.+-|.. +|-+.. ++.....||.|=+=||-.
T Consensus 92 ~VP-ValHLDHg~~~~~-~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~I 169 (350)
T PRK09197 92 GVP-VILHTDHCAKKLL-PWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVT 169 (350)
T ss_pred CCC-EEEECCCCCCcch-HHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 877 77777653 2 2 1234454444333322 359999997763 333433 444446899998777765
Q ss_pred ccccccc--CCc--cccCCCHHHHHHHHHHHHHHHHcCC----cEEE----------ecC---CCHHHHHHHHhhc----
Q 016682 219 PQAISVL--GGF--RPQGKNVTSAVKVVETALALQEVGC----FSVV----------LEC---VPPPVAAAATSAL---- 273 (384)
Q Consensus 219 PQ~~~~l--gGf--rvqGrt~~~a~~ll~rAkAleeAGA----f~Iv----------lE~---Vp~ela~~It~~l---- 273 (384)
+....-. .+. ...=-+.++|.+.++ +-|+ |+|= -.. +.-++.+.|.+.+
T Consensus 170 gg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~------~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~ 243 (350)
T PRK09197 170 GGEEDGVDNSHEDNSKLYTQPEDVLYAYE------ALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKF 243 (350)
T ss_pred CCCcCCccccccccccccCCHHHHHHHHH------HhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhh
Confidence 5322110 000 000123455555444 3455 5443 212 3468899999999
Q ss_pred -----CCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 274 -----QIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 274 -----~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
++|+.-=|+..-.|=|+.=. ==+|.. | +.-+-++.....+++++|..+
T Consensus 244 ~~~~~~vPLVLHGgSGipde~i~~a-i~~GI~----------K-INi~T~l~~a~~~~~~~~~~~ 296 (350)
T PRK09197 244 GLPAKPFDFVFHGGSGSTLEEIREA-VSYGVV----------K-MNIDTDTQWAFWRGVLDYYFK 296 (350)
T ss_pred CCCCCCCCEEEeCCCCCCHHHHHHH-HHCCCe----------e-EEeCcHHHHHHHHHHHHHHHh
Confidence 79966444443333333211 113443 1 233456666677777777643
No 384
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=88.45 E-value=1.3 Score=43.37 Aligned_cols=76 Identities=26% Similarity=0.329 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHH
Q 016682 176 AVRILKEGGMDAIKLEGGS-----PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAlee 250 (384)
-.+..++-|.++|-|.+|+ ++....|+.+.+.|..|.-.+|-...... ......++++.++.--+
T Consensus 89 yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~----------~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 89 YLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESD----------FSLDPEELIEQAKRDLE 158 (244)
T ss_dssp HHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHH----------TT--CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhc----------ccCCHHHHHHHHHHHHH
Confidence 3566788999999999995 56678888888999999877662221100 00123689999999999
Q ss_pred cCCcEEEecCC
Q 016682 251 VGCFSVVLECV 261 (384)
Q Consensus 251 AGAf~IvlE~V 261 (384)
|||+.|.+|+=
T Consensus 159 AGA~~ViiEar 169 (244)
T PF02679_consen 159 AGADKVIIEAR 169 (244)
T ss_dssp HTECEEEE--T
T ss_pred CCCCEEEEeee
Confidence 99999999975
No 385
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=88.42 E-value=16 Score=37.60 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=101.0
Q ss_pred CCCHHHHHHhhh-CCCcEEEEec----CC-hHHHHHHH---HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHH
Q 016682 78 RVTLTHLRQKHK-NGEPITMVTA----YD-YPSAVHLD---SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA 148 (384)
Q Consensus 78 ~~t~~~lr~~k~-~g~~I~mlTA----yD-~~sA~iae---~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~ 148 (384)
+.-++-+|++.. .++||++-.. .| -..|+++. ..|+|.|-.--+ ..|.-..+++|=+..+..+.
T Consensus 111 ~~Gi~g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~-------l~~~~~~p~~eRv~~v~~av 183 (364)
T cd08210 111 RFGIAGLRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHG-------LADQPFAPFEERVKACQEAV 183 (364)
T ss_pred CCChHHHHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCcc-------ccCccCCCHHHHHHHHHHHH
Confidence 456777776653 4678877532 12 22344443 469999843212 23444678999887776655
Q ss_pred cccC-----CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-cC-CceeeeccCCccc
Q 016682 149 RGAK-----RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AG-IAVMGHVGLTPQA 221 (384)
Q Consensus 149 Rga~-----~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aG-IPV~gHiGLtPQ~ 221 (384)
+.+. +.+.++++- .+.++.+++|.+.. +.|+++|.+--. ..-...++.|.+ .+ .|+++|=
T Consensus 184 ~~a~~eTG~~~~y~~Nit-----a~~~em~~ra~~a~-~~Ga~~vMv~~~-~~G~~~~~~l~~~~~~l~i~aHr------ 250 (364)
T cd08210 184 AEANAETGGRTLYAPNVT-----GPPTQLLERARFAK-EAGAGGVLIAPG-LTGLDTFRELAEDFDFLPILAHP------ 250 (364)
T ss_pred HHHHhhcCCcceEEEecC-----CCHHHHHHHHHHHH-HcCCCEEEeecc-cchHHHHHHHHhcCCCcEEEEcc------
Confidence 4443 456667764 23569999997765 799999999754 222445666664 56 8889881
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC------CHHHHHHHHhhcCCC
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV------PPPVAAAATSALQIP 276 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V------p~ela~~It~~l~IP 276 (384)
...|-|. + +...-.--+--++-..-+|+|.+..... +.+....+.+.+.-|
T Consensus 251 -a~~ga~~-~--~~~~is~~~~~~kl~RlaGad~~~~~~~~g~~~~~~e~~~~ia~~~~~~ 307 (364)
T cd08210 251 -AFAGAFV-S--SGDGISHALLFGTLFRLAGADAVIFPNYGGRFGFSREECQAIADACRRP 307 (364)
T ss_pred -ccccccc-c--CCCcccHHHHHHHHHHHhCCCEEEeCCCcCCccCCHHHHHHHHHHhcCC
Confidence 1112221 1 1111000011345556699999876543 356667677654434
No 386
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=88.39 E-value=5.6 Score=40.98 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=100.9
Q ss_pred EEEEecCChHHHHHHHHcCCCEEE--ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC--CC---Cc
Q 016682 94 ITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF--GT---YE 166 (384)
Q Consensus 94 I~mlTAyD~~sA~iae~AGiD~Il--VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf--gs---Y~ 166 (384)
.++-+-|-...|.++++||+++.- |- ..-+-|.+-.+.--+-..++-+.+++.| +=+||.. |+ .+
T Consensus 261 ~~LAGL~PHqQa~l~~kAGanvFGPVvN-------tntS~t~~WNlaRaVTf~Ka~veas~iP-~HvnmGMGVGGiPm~e 332 (466)
T PF09505_consen 261 VTLAGLWPHQQAPLAEKAGANVFGPVVN-------TNTSKTSPWNLARAVTFIKAAVEASPIP-CHVNMGMGVGGIPMLE 332 (466)
T ss_pred EeeeccCcccccchHHhcCcceecceec-------CCCccccchHHHHHHHHHHHHHhcCCCC-cccccCcCcCCccccc
Confidence 456678889999999999999872 22 1112344555556667778888888888 5555554 22 34
Q ss_pred CCHHHHHHHHHHHH-HHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHH----HHH
Q 016682 167 SSTNQAVDTAVRIL-KEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA----VKV 241 (384)
Q Consensus 167 ~s~e~av~nA~rl~-keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a----~~l 241 (384)
.-|-+++.-|.+.| +-+|+|++.+--| +-+.=-|.++...| ++|.|.-|.-.++- ..=
T Consensus 333 TpP~DavsRaSkAmvEi~~vDGi~iGvG-Dp~gM~isH~maSG----------------M~G~RaaGDLVARmq~sknmr 395 (466)
T PF09505_consen 333 TPPIDAVSRASKAMVEIAGVDGIAIGVG-DPMGMPISHIMASG----------------MTGMRAAGDLVARMQFSKNMR 395 (466)
T ss_pred CCCcHHHHHHHHHHHHHhcCCceeeccC-CcccChhHHHHhcc----------------cccccchhhhhhhhhhccccc
Confidence 45667777665554 4489999999766 43333355555544 44555544322221 234
Q ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEE
Q 016682 242 VETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIG 279 (384)
Q Consensus 242 l~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIG 279 (384)
|..||.|..----.=..+...+-+.+++.++|+|=+|-
T Consensus 396 i~EAK~YVa~KL~V~~~dLsDe~~MrelReeL~IG~it 433 (466)
T PF09505_consen 396 IGEAKEYVAKKLGVEPMDLSDEYVMRELREELNIGVIT 433 (466)
T ss_pred hhHHHHHHHHhhCCChhhcccHHHHHHHHHhcCcceee
Confidence 66777776432222344566789999999999987763
No 387
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=88.37 E-value=20 Score=32.79 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=75.7
Q ss_pred HcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Q 016682 110 SAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIK 189 (384)
Q Consensus 110 ~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVK 189 (384)
+.|+|+|=+|-++- .-.| +...+.+++-.+.-.+.+|+... ++... . .+.+.++|||.|-
T Consensus 22 ~~~v~~iev~~~l~-~~~g------------~~~i~~l~~~~~~~~i~~d~k~~----d~~~~--~-~~~~~~~Gad~i~ 81 (206)
T TIGR03128 22 ADYVDIIEIGTPLI-KNEG------------IEAVKEMKEAFPDRKVLADLKTM----DAGEY--E-AEQAFAAGADIVT 81 (206)
T ss_pred ccCeeEEEeCCHHH-HHhC------------HHHHHHHHHHCCCCEEEEEEeec----cchHH--H-HHHHHHcCCCEEE
Confidence 45777776764441 1111 34556666654445688999764 33321 1 2333479999986
Q ss_pred eCCCc--cchHHHHHHHHHcCCceeeeccC-CcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC------
Q 016682 190 LEGGS--PSRITAARGIVEAGIAVMGHVGL-TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC------ 260 (384)
Q Consensus 190 LEgg~--~e~~~~I~alv~aGIPV~gHiGL-tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~------ 260 (384)
+-.-. ....+.++.+.+.|++++. ++ +| .| ..++++.+.+.|++.|-+.-
T Consensus 82 vh~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~-------------~t------~~~~~~~~~~~g~d~v~~~pg~~~~~ 140 (206)
T TIGR03128 82 VLGVADDATIKGAVKAAKKHGKEVQV--DLINV-------------KD------KVKRAKELKELGADYIGVHTGLDEQA 140 (206)
T ss_pred EeccCCHHHHHHHHHHHHHcCCEEEE--EecCC-------------CC------hHHHHHHHHHcCCCEEEEcCCcCccc
Confidence 53321 1346778888899999874 11 22 11 34455556777999887651
Q ss_pred C---CHHHHHHHHhhcCCCEEE-Ec
Q 016682 261 V---PPPVAAAATSALQIPTIG-IG 281 (384)
Q Consensus 261 V---p~ela~~It~~l~IPtIG-IG 281 (384)
. ..+..+.+.+.++.|.+. +|
T Consensus 141 ~~~~~~~~i~~l~~~~~~~~i~v~G 165 (206)
T TIGR03128 141 KGQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEC
Confidence 1 234457777777655554 44
No 388
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=88.37 E-value=5.5 Score=41.34 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcE
Q 016682 78 RVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLL 156 (384)
Q Consensus 78 ~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~v 156 (384)
.+|.++|..+.+ -+-|+++=++-+...|+.+.++|+|.|.|+-+.|-.. |+..-|++-+....+++.. +.| |
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~----d~~~~t~~~L~~i~~a~~~--~~~-v 303 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL----DGVLSSARALPAIADAVKG--DIT-I 303 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC----CCcccHHHHHHHHHHHhcC--CCe-E
Confidence 467777776543 3469999999999999999999999999886554422 3334445444333343321 233 8
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
++| |+.. +..+.+ +.+ ..||++|-+
T Consensus 304 i~d---GGIr-~g~Di~----KAL-aLGA~~V~i 328 (381)
T PRK11197 304 LAD---SGIR-NGLDVV----RMI-ALGADTVLL 328 (381)
T ss_pred Eee---CCcC-cHHHHH----HHH-HcCcCceeE
Confidence 888 6773 666663 456 579999988
No 389
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.32 E-value=3.1 Score=44.47 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHHHHhhhC-CCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCC-CCcCCCHHHHHHHHHHHHc------c
Q 016682 81 LTHLRQKHKN-GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHD-TTLPITLEEMLVHCRAVAR------G 150 (384)
Q Consensus 81 ~~~lr~~k~~-g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~-dT~~VtldeMl~h~raV~R------g 150 (384)
+..++.+++. +.++.+. |+.++.-|+.+-++|+|.|-||=..|..+-=.. ....++.-..++.|...++ +
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 4455555443 2234433 699999999999999999999766663322221 1123333344444444442 3
Q ss_pred cCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 151 AKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 151 a~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
...| |++| |+.. +..+. .+.+ .+|||+|.+-
T Consensus 351 ~~~~-viad---gGir-~~gdi----~KAl-a~GA~~vm~G 381 (502)
T PRK07107 351 VYIP-ICSD---GGIV-YDYHM----TLAL-AMGADFIMLG 381 (502)
T ss_pred Ccce-EEEc---CCCC-chhHH----HHHH-HcCCCeeeeC
Confidence 2234 9999 5564 34444 3566 5899999993
No 390
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=88.31 E-value=4.4 Score=39.80 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH-
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE- 182 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke- 182 (384)
.|+.++++|+|.+++--. .-...+-++++.|.+.|+.+++.|+++=+.+ ++..+++.. .+|.++
T Consensus 91 ~a~~a~~~Gadav~~~pP---------~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~--g~~l~~~~~----~~La~~~ 155 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPP---------YLINGEQEGLYAHVEAVCESTDLGVIVYQRD--NAVLNADTL----ERLADRC 155 (296)
T ss_pred HHHHHHHhCCCEEEECCC---------CCCCCCHHHHHHHHHHHHhccCCCEEEEeCC--CCCCCHHHH----HHHHhhC
Confidence 578888999999987432 2234567999999999999999998888733 555677765 356642
Q ss_pred hCCCEEEeCCCccchHHHHHHHHH
Q 016682 183 GGMDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 183 aGAdaVKLEgg~~e~~~~I~alv~ 206 (384)
-.+.+||-..+ -...+..+.+
T Consensus 156 ~nvvgiKds~~---d~~~~~~~~~ 176 (296)
T TIGR03249 156 PNLVGFKDGIG---DMEQMIEITQ 176 (296)
T ss_pred CCEEEEEeCCC---CHHHHHHHHH
Confidence 47899998765 2334444443
No 391
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=88.28 E-value=21 Score=38.54 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=82.9
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHH-cccCCCcEEEeC-C-CCCCcCCHHHHHHHHHHHH
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA-RGAKRPLLVGDL-P-FGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~-Rga~~~~vvaDm-P-fgsY~~s~e~av~nA~rl~ 180 (384)
-|+.++++|||.|=+|.+.+ .+ .| ...++.++ ++.+.+-|.+=. . --+-..+.+..++ ..
T Consensus 28 Ia~~L~~~GVd~IE~G~p~~---------s~---~d-~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~e----a~ 90 (526)
T TIGR00977 28 IAERLDDLGIHYIEGGWPGA---------NP---KD-VQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQ----AL 90 (526)
T ss_pred HHHHHHHcCCCEEEEeCCCC---------Ch---HH-HHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHH----HH
Confidence 36779999999998874432 22 22 22334444 343334343321 0 0011112334443 33
Q ss_pred HHhCCCEEEeCCCc-------------cch----HHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHH
Q 016682 181 KEGGMDAIKLEGGS-------------PSR----ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (384)
Q Consensus 181 keaGAdaVKLEgg~-------------~e~----~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~ 243 (384)
.++|++.|.+-... +|. .+.|+.+.+.|..|.. .+.. +..+| |+ +-+.+++
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~----~~e~--f~D~~----r~--~~~~l~~ 158 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIY----DAEH--FFDGY----KA--NPEYALA 158 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE----Eeee--eeecc----cC--CHHHHHH
Confidence 46899999885431 222 4456677778887752 2211 22344 33 2356667
Q ss_pred HHHHHHHcCCcEEEecC-----CC---HHHHHHHHhhcCCCEEEEcC
Q 016682 244 TALALQEVGCFSVVLEC-----VP---PPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 244 rAkAleeAGAf~IvlE~-----Vp---~ela~~It~~l~IPtIGIGA 282 (384)
-++++.++||+.|.+-= .| .++++.+.+.++.|.+++-+
T Consensus 159 ~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~ 205 (526)
T TIGR00977 159 TLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHA 205 (526)
T ss_pred HHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 77777899999998762 35 35556666667777666643
No 392
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=88.28 E-value=8.3 Score=39.25 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=62.4
Q ss_pred HHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCc---
Q 016682 178 RILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCF--- 254 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf--- 254 (384)
.++.+-|++++||--+.--..+.|+++.+.|.||+-= .| + -| ..++.+-+..+.++|+.
T Consensus 103 d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilS----------tG-m----at---l~Ei~~Av~~i~~~G~~~~~ 164 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILS----------TG-M----AT---LEEIEAAVGVLRDAGTPDSN 164 (329)
T ss_pred HHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEE----------CC-C----CC---HHHHHHHHHHHHHcCCCcCc
Confidence 5677789999999655335579999999999999842 22 1 13 34555556666789985
Q ss_pred EEEecCCC----------HHHHHHHHhhcCCCEEEEcCCCCCCc
Q 016682 255 SVVLECVP----------PPVAAAATSALQIPTIGIGAGPFCSG 288 (384)
Q Consensus 255 ~IvlE~Vp----------~ela~~It~~l~IPtIGIGAG~~cDG 288 (384)
.+++.|+. -..+..+.+..++|+. + + .++.|
T Consensus 165 i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG-~-S-dHt~G 205 (329)
T TIGR03569 165 ITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVG-Y-S-DHTLG 205 (329)
T ss_pred EEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEE-E-C-CCCcc
Confidence 88888873 2456777788888844 4 3 45555
No 393
>PRK00865 glutamate racemase; Provisional
Probab=88.25 E-value=1.5 Score=42.57 Aligned_cols=90 Identities=21% Similarity=0.265 Sum_probs=63.4
Q ss_pred CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 153 RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 153 ~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
.|.-+-|=..||+. .++...+.+- ..+-|.+-|. . ..| .| .
T Consensus 6 ~~IgvfDSGiGGLt-----vl~~i~~~lp--~~~~iY~~D~-~------------~~P--------------YG-----~ 46 (261)
T PRK00865 6 APIGVFDSGVGGLT-----VLREIRRLLP--DEHIIYVGDT-A------------RFP--------------YG-----E 46 (261)
T ss_pred CeEEEEECCccHHH-----HHHHHHHHCC--CCCEEEEecC-C------------CCC--------------CC-----C
Confidence 46667888888872 4444456663 5688888665 1 111 12 2
Q ss_pred CCHHHHHH-HHHHHHHHHHcCCcEEEecCCCHH--HHHHHHhhcCCCEEEEc
Q 016682 233 KNVTSAVK-VVETALALQEVGCFSVVLECVPPP--VAAAATSALQIPTIGIG 281 (384)
Q Consensus 233 rt~~~a~~-ll~rAkAleeAGAf~IvlE~Vp~e--la~~It~~l~IPtIGIG 281 (384)
|+.++..+ +.+-++.+++.||++|++-|-.+. ....+.+.+++|++||-
T Consensus 47 ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi~ 98 (261)
T PRK00865 47 KSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVGIV 98 (261)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEeeH
Confidence 67666644 556678899999999999999754 45889999999999963
No 394
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.21 E-value=26 Score=36.10 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=91.2
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
-+.-|++.+++-...++-+.+|...+..+.+. +|++-+|.-. ++--++ .+++.+ ++.| |+.-
T Consensus 153 gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~------------~~n~~L---L~~va~-t~kP-Vllk 214 (352)
T PRK13396 153 ALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARN------------MQNFSL---LKKVGA-QDKP-VLLK 214 (352)
T ss_pred HHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECccc------------ccCHHH---HHHHHc-cCCe-EEEe
Confidence 45566665555556677999999999999998 9999998443 121233 455544 4567 4433
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhCC-CEEEeCCCc----------cchHHHHHHHHHc-CCceeeeccCCcccccccCC
Q 016682 160 LPFGTYESSTNQAVDTAVRILKEGGM-DAIKLEGGS----------PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 160 mPfgsY~~s~e~av~nA~rl~keaGA-daVKLEgg~----------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgG 227 (384)
-+. . .++++....+-.++ +.|- +.+-+|-|. .--...|..+.+. +.||+. .|.+..
T Consensus 215 ~G~--~-~t~ee~~~A~e~i~-~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~----DpsH~~---- 282 (352)
T PRK13396 215 RGM--A-ATIDEWLMAAEYIL-AAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMI----DPSHGT---- 282 (352)
T ss_pred CCC--C-CCHHHHHHHHHHHH-HcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEE----CCcccC----
Confidence 332 2 47777776666666 5666 688888752 0112344445443 889973 453322
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V 261 (384)
|+.+ -+..-+++-..+||++|++|.=
T Consensus 283 ----G~sd----~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 283 ----GKSE----YVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred ----CcHH----HHHHHHHHHHhhCCCeEEEEec
Confidence 4433 2335778888999999999953
No 395
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.20 E-value=23 Score=34.67 Aligned_cols=126 Identities=10% Similarity=0.008 Sum_probs=72.8
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhh----hhhccCCCCcCCCHHHHHHHHHHHHcccC--C
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVARGAK--R 153 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~----mv~lG~~dT~~VtldeMl~h~raV~Rga~--~ 153 (384)
.++.+.++..+ ..+......+..-...+.++|+|.|-+-.+++ -..+| -|.+|.+..++.+.+-++ .
T Consensus 53 ~~~~l~~~~~~-~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~------~~~~e~~~~~~~~i~~a~~~G 125 (262)
T cd07948 53 DCEAIAKLGLK-AKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHG------KSITEIIESAVEVIEFVKSKG 125 (262)
T ss_pred HHHHHHhCCCC-CcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHCC
Confidence 34444443322 45555556677778888899999985433322 22233 455665544432222111 1
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
-.|...+.- ++..+++...+.+.++. +.|++.|.|-|-. .++.+.++.+.+. ++|+--|
T Consensus 126 ~~v~~~~ed-a~r~~~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H 190 (262)
T cd07948 126 IEVRFSSED-SFRSDLVDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDIEFH 190 (262)
T ss_pred CeEEEEEEe-eCCCCHHHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 224455553 55556777776666665 7999999999852 4556666776653 5666555
No 396
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=88.18 E-value=9.2 Score=38.24 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=71.9
Q ss_pred CcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCCC----
Q 016682 92 EPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPFG---- 163 (384)
Q Consensus 92 ~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPfg---- 163 (384)
-|+++= -+.|+...+.+=++||.-+.. |....+++|-+..|+.|++-+... .|=+-+..-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~------------DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e 145 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMI------------DASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQE 145 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc
Confidence 366554 567888888888889988875 344678999999999887655411 011211110
Q ss_pred --------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 164 --------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 164 --------sY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
-| .+|+++ .+|++++|+|++=+-=|+ .-..++++.+.+. +||.+-|
T Consensus 146 d~~~~~~~~y-T~peea----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLH 209 (286)
T PRK08610 146 DDVVADGIIY-ADPKEC----QELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLH 209 (286)
T ss_pred CCCCCccccc-CCHHHH----HHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEe
Confidence 16 689988 579999999988776432 2235666666653 8999988
No 397
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=88.14 E-value=22 Score=36.27 Aligned_cols=135 Identities=20% Similarity=0.148 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|||.|=+| +|... -+| ...++.+++..+.+-+++ |.- .+.++ ++ ...++
T Consensus 28 ia~~L~~~Gv~~IEvG---------~p~~~---~~~-~e~i~~i~~~~~~~~i~~---~~r--~~~~d-i~----~a~~~ 84 (365)
T TIGR02660 28 IARALDEAGVDELEVG---------IPAMG---EEE-RAVIRAIVALGLPARLMA---WCR--ARDAD-IE----AAARC 84 (365)
T ss_pred HHHHHHHcCCCEEEEe---------CCCCC---HHH-HHHHHHHHHcCCCcEEEE---EcC--CCHHH-HH----HHHcC
Confidence 3567899999999887 33322 111 233455554433332322 111 23333 33 33378
Q ss_pred CCCEEEeCCCc-------------cc----hHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-------------PS----RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-------------~e----~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+-... ++ ..+.|+.+.+.|..|+.. +. -.+|++ -+.+++-++
T Consensus 85 g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~----~e---------d~~r~~--~~~l~~~~~ 149 (365)
T TIGR02660 85 GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG----GE---------DASRAD--PDFLVELAE 149 (365)
T ss_pred CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe----ec---------CCCCCC--HHHHHHHHH
Confidence 99999987652 11 235677777789877632 11 123443 356777777
Q ss_pred HHHHcCCcEEEec-C----CCH---HHHHHHHhhcCCC
Q 016682 247 ALQEVGCFSVVLE-C----VPP---PVAAAATSALQIP 276 (384)
Q Consensus 247 AleeAGAf~IvlE-~----Vp~---ela~~It~~l~IP 276 (384)
++.++|++.|.+. . .|. ++.+.+.+.+++|
T Consensus 150 ~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~v~ 187 (365)
T TIGR02660 150 VAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP 187 (365)
T ss_pred HHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 8889999999876 2 253 4455555655655
No 398
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=88.14 E-value=7.5 Score=43.37 Aligned_cols=164 Identities=20% Similarity=0.212 Sum_probs=88.4
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe--c---------chhhhhhc-cCCCCcCCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--G---------DSAAMVVH-GHDTTLPITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV--G---------DSl~mv~l-G~~dT~~VtldeMl~h~ 144 (384)
+.+|..++.+..+. | .-.|+.+.++|||.|=+ | +...+..- .|-....=-+.-.++..
T Consensus 539 ~~mt~~eI~~~i~~---------f-~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv 608 (765)
T PRK08255 539 REMTRADMDRVRDD---------F-VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVF 608 (765)
T ss_pred CcCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHH
Confidence 46888888887653 1 24678889999999933 3 11111110 11000011134455666
Q ss_pred HHHHcccCC--CcEE----EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCcc-----------chHHHHHHHHH-
Q 016682 145 RAVARGAKR--PLLV----GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSP-----------SRITAARGIVE- 206 (384)
Q Consensus 145 raV~Rga~~--~~vv----aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~-----------e~~~~I~alv~- 206 (384)
++|+..++. |+.+ .|.--++ .+.+++++-+..+ ++.|+|.|.+-+|.. ...+..+.+.+
T Consensus 609 ~~ir~~~~~~~~v~~ri~~~~~~~~g--~~~~~~~~~~~~l-~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~ 685 (765)
T PRK08255 609 RAVRAVWPAEKPMSVRISAHDWVEGG--NTPDDAVEIARAF-KAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNE 685 (765)
T ss_pred HHHHHhcCCCCeeEEEEccccccCCC--CCHHHHHHHHHHH-HhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHH
Confidence 777776643 3222 1322233 3788888877665 478999999975421 11233333333
Q ss_pred cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhhcC
Q 016682 207 AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSALQ 274 (384)
Q Consensus 207 aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~l~ 274 (384)
.+|||++. |++ +|.+.++++|+ +-+||+|.+= .+ .++.......++.
T Consensus 686 ~~~pv~~~-----------G~i----~~~~~a~~~l~------~g~~D~v~~gR~~l~dP~~~~~~~~~~~ 735 (765)
T PRK08255 686 AGIATIAV-----------GAI----SEADHVNSIIA------AGRADLCALARPHLADPAWTLHEAAEIG 735 (765)
T ss_pred cCCEEEEe-----------CCC----CCHHHHHHHHH------cCCcceeeEcHHHHhCccHHHHHHHHcC
Confidence 37888753 333 25555555543 3458888764 22 3444444444443
No 399
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=88.10 E-value=18 Score=35.56 Aligned_cols=149 Identities=21% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCcEEEEecCChHHHHHHHHcCCCEEEecchhh----hhhccCCCCcCCCHHHHHHHHHHHHccc---CCCcE-----EE
Q 016682 91 GEPITMVTAYDYPSAVHLDSAGIDICLVGDSAA----MVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLL-----VG 158 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~----mv~lG~~dT~~VtldeMl~h~raV~Rga---~~~~v-----va 158 (384)
+-+++.+. -..--...+-++|+|.|-+..+.. -..++ .|.++.+..+....+-+ ..-+. ..
T Consensus 66 ~~~~~~~~-~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f 138 (274)
T cd07938 66 GVRYSALV-PNLRGAERALAAGVDEVAVFVSASETFSQKNIN------CSIAESLERFEPVAELAKAAGLRVRGYVSTAF 138 (274)
T ss_pred CCEEEEEC-CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEe
Confidence 34455553 344556677789999986554443 22333 34444444433322222 22211 25
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc--CCceeeeccCCcccccccCCcccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
+.||.+. .+++..++.+.++. +.|++.|.|-|-. .+..+.|+.+.+. ++|+--| ..+-+|
T Consensus 139 ~~~~~~~-~~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H------~Hnd~G----- 205 (274)
T cd07938 139 GCPYEGE-VPPERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALH------FHDTRG----- 205 (274)
T ss_pred cCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEE------ECCCCC-----
Confidence 5677666 58888888777766 7999999999852 5667788888765 4666666 222222
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCC
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGP 284 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~ 284 (384)
-.+.-+.+--+|||+. ++.=+.|||..|
T Consensus 206 --------lA~AN~laA~~aGa~~-----------------id~t~~GlGgcp 233 (274)
T cd07938 206 --------QALANILAALEAGVRR-----------------FDSSVGGLGGCP 233 (274)
T ss_pred --------hHHHHHHHHHHhCCCE-----------------EEEeccccCCCC
Confidence 2234556667899963 345578998433
No 400
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.08 E-value=25 Score=33.80 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=59.2
Q ss_pred HHHHHHcCCCEEEec--------chhhh-hhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCH------
Q 016682 105 AVHLDSAGIDICLVG--------DSAAM-VVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESST------ 169 (384)
Q Consensus 105 A~iae~AGiD~IlVG--------DSl~m-v~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~------ 169 (384)
++.++++|+|+|=+| |.--. ...-..=...++++..+..++.|++..+.|+++ ++| .|+
T Consensus 20 ~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l-----m~y-~n~~~~~G~ 93 (242)
T cd04724 20 LKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL-----MGY-YNPILQYGL 93 (242)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE-----EEe-cCHHHHhCH
Confidence 556778888888776 21100 000000012345677788889998766666332 345 244
Q ss_pred HHHHHHHHHHHHHhCCCEEEeCCCc-cchHHHHHHHHHcCCcee
Q 016682 170 NQAVDTAVRILKEGGMDAIKLEGGS-PSRITAARGIVEAGIAVM 212 (384)
Q Consensus 170 e~av~nA~rl~keaGAdaVKLEgg~-~e~~~~I~alv~aGIPV~ 212 (384)
+.- .+.++++|+++|-+=|=. ++..+.++.+.+.|+...
T Consensus 94 ~~f----i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 94 ERF----LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HHH----HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEE
Confidence 444 455668999999995521 455678888888998553
No 401
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=88.07 E-value=23 Score=36.32 Aligned_cols=163 Identities=18% Similarity=0.183 Sum_probs=97.9
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEec----chhhhhhccCCCCcCCCHHHHHHHHHHHHccc---CCCcEE------E
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVG----DSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLV------G 158 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVG----DSl~mv~lG~~dT~~VtldeMl~h~raV~Rga---~~~~vv------a 158 (384)
-.+..+ ++...-...+-++|+|.|.+. |.....-+ ..|.+|.+...+.+.+-+ ... |. .
T Consensus 115 ~~~~~l-~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~------~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~f 186 (347)
T PLN02746 115 ARFPVL-TPNLKGFEAAIAAGAKEVAVFASASESFSKSNI------NCSIEESLVRYREVALAAKKHSIP-VRGYVSCVV 186 (347)
T ss_pred CceeEE-cCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeee
Confidence 344545 457777777889999987433 22222222 355677666444333322 222 32 2
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C-CceeeeccCCcccccccCCcccc
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G-IAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G-IPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
..||.+. .+++..++.+.++. +.||+.|.|-|-. .++.+.|+++.+. + +|+--| ..+.+|
T Consensus 187 g~p~~~r-~~~~~l~~~~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H------~Hnd~G----- 253 (347)
T PLN02746 187 GCPIEGP-VPPSKVAYVAKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVH------FHDTYG----- 253 (347)
T ss_pred cCCccCC-CCHHHHHHHHHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEE------ECCCCC-----
Confidence 3577565 68888888888877 7999999999852 5667778888764 3 234444 112222
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcC--------CCCCCchhhhHhhhhcCC
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGA--------GPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGA--------G~~cDGQvLV~~DlLG~~ 300 (384)
-.+.-+.+--+|||+.+ +.=+.|||. |+-+==+++.+-+.+|..
T Consensus 254 --------lA~AN~lAA~~aGa~~v-----------------d~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~ 305 (347)
T PLN02746 254 --------QALANILVSLQMGISTV-----------------DSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVS 305 (347)
T ss_pred --------hHHHHHHHHHHhCCCEE-----------------EEecccccCCCCCCCCCCChhHHHHHHHHHhcCCC
Confidence 23445666678999743 445678883 555444566665555665
No 402
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=88.03 E-value=21 Score=32.64 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=64.0
Q ss_pred ChH--HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHH
Q 016682 101 DYP--SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVR 178 (384)
Q Consensus 101 D~~--sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~r 178 (384)
|.. .++.+-++|+|+|.+= +.. ...++.+++..++. +| .+ ++.+++- .....+++ ..
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh--------~~~--~~~~~~~~i~~~~~--~g--~~-~~~~~~~--~~t~~~~~----~~ 121 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVL--------GVA--DDATIKGAVKAAKK--HG--KE-VQVDLIN--VKDKVKRA----KE 121 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEe--------ccC--CHHHHHHHHHHHHH--cC--CE-EEEEecC--CCChHHHH----HH
Confidence 544 6777889999999753 111 12345666666553 33 33 6667542 22233444 23
Q ss_pred HHHHhCCCEEEeCCCc------cchHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHH
Q 016682 179 ILKEGGMDAIKLEGGS------PSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQE 250 (384)
Q Consensus 179 l~keaGAdaVKLEgg~------~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAlee 250 (384)
.. +.|+|.|++.-+. ....+.|+.+.+. .++++ ..||. +. +.+..+.+
T Consensus 122 ~~-~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~-----------v~GGI-----~~-------~n~~~~~~ 177 (206)
T TIGR03128 122 LK-ELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVA-----------VAGGI-----NL-------DTIPDVIK 177 (206)
T ss_pred HH-HcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEE-----------EECCc-----CH-------HHHHHHHH
Confidence 34 5699999997331 2345667777652 22221 24553 32 23456778
Q ss_pred cCCcEEEe
Q 016682 251 VGCFSVVL 258 (384)
Q Consensus 251 AGAf~Ivl 258 (384)
+||+.+++
T Consensus 178 ~Ga~~v~v 185 (206)
T TIGR03128 178 LGPDIVIV 185 (206)
T ss_pred cCCCEEEE
Confidence 99998887
No 403
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=87.94 E-value=9.3 Score=38.12 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=72.2
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCC---
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPF--- 162 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPf--- 162 (384)
.+-|+.+= -+.|+...+-+-++||.-|.. |....+++|-+..|+.|++-+... -|=+-+..
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVMi------------DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 73 YNIPLALHLDHHEDLDDIKKKVRAGIRSVMI------------DGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEe------------cCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 34465443 477777778888888887765 344679999999999987765421 01111111
Q ss_pred -----------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 163 -----------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 -----------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
..| .+|++| .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 141 ~e~~~~~~~~~~~~-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlH 208 (284)
T PRK12737 141 QEDDLVVDEKDAMY-TNPDAA----AEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLH 208 (284)
T ss_pred ccCCcccccccccC-CCHHHH----HHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEe
Confidence 116 688888 579999999998876442 2245667777653 8999988
No 404
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=87.94 E-value=26 Score=33.81 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=65.2
Q ss_pred CCCcEEEEe---cCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHH-cccCCCcEEEeCCCCCC
Q 016682 90 NGEPITMVT---AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA-RGAKRPLLVGDLPFGTY 165 (384)
Q Consensus 90 ~g~~I~mlT---AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~-Rga~~~~vvaDmPfgsY 165 (384)
.+.+++++. ..+.-.-..+.++|+|.+-+.++..-. +.+...++.++ +|.. +.+.+. .+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~------------~~~~~~i~~ak~~G~~---v~~~~~-~~~ 136 (263)
T cd07943 73 KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEA------------DVSEQHIGAARKLGMD---VVGFLM-MSH 136 (263)
T ss_pred cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhH------------HHHHHHHHHHHHCCCe---EEEEEE-ecc
Confidence 356777663 334445566678899999776655422 23344444333 2322 333332 134
Q ss_pred cCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CC-ceeee
Q 016682 166 ESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GI-AVMGH 214 (384)
Q Consensus 166 ~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GI-PV~gH 214 (384)
..+++..++.+.++. +.|++.|.|-|-. .++.+.++.+.+. +. |+--|
T Consensus 137 ~~~~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H 191 (263)
T cd07943 137 MASPEELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFH 191 (263)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence 468888888776665 7999999999852 4556666666653 43 66666
No 405
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=87.92 E-value=16 Score=35.58 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=75.1
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHc-cc-CCCcEEEeCC-CCCCcCCHHHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVAR-GA-KRPLLVGDLP-FGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~R-ga-~~~~vvaDmP-fgsY~~s~e~av~nA~rl~k 181 (384)
++.++++|||.|=+|... ++-++ ...++.++. +. +..++...++ --++..-.+..+ +...
T Consensus 26 ~~~L~~~Gv~~IE~G~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~a~ 88 (273)
T cd07941 26 ARKLDELGVDYIEGGWPG------------SNPKD-TEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNL----QALL 88 (273)
T ss_pred HHHHHHcCCCEEEecCCc------------CCHHH-HHHHHHHHHcCCCCcEEEEEecccccCCCccchHHH----HHHH
Confidence 556899999999887421 12222 333444433 22 2233332211 112221112232 3344
Q ss_pred HhCCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHH
Q 016682 182 EGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVET 244 (384)
Q Consensus 182 eaGAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~r 244 (384)
+.|++.|.+-... +...+.|+.+.+.|+.|+. ++.. ...++ ++ +.+.+++-
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~----~~~~--~~d~~----~~--~~~~~~~~ 156 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF----DAEH--FFDGY----KA--NPEYALAT 156 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE----eEEe--ccccC----CC--CHHHHHHH
Confidence 7899999985321 2335566677788988874 1211 11122 33 23566777
Q ss_pred HHHHHHcCCcEEEec-----CCCHHH---HHHHHhhcC
Q 016682 245 ALALQEVGCFSVVLE-----CVPPPV---AAAATSALQ 274 (384)
Q Consensus 245 AkAleeAGAf~IvlE-----~Vp~el---a~~It~~l~ 274 (384)
++.+.++|++.|.+- +.|.++ .+.+.++++
T Consensus 157 ~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 157 LKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCC
Confidence 788889999999887 446443 444444444
No 406
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=87.80 E-value=9.9 Score=37.95 Aligned_cols=108 Identities=13% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCC---
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPF--- 162 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPf--- 162 (384)
..-|+++= -+.|+...+-+=++||+-|.+ |....+++|-+..|+.|++-+..- .|=+-+..
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~------------DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 140 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMI------------DGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG 140 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEe------------CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC
Confidence 34565544 566777777777888888865 344678999999999887655311 01121111
Q ss_pred -----------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 163 -----------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 -----------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
..| .+|+++ .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 141 ~e~~~~~~~~~~~~-T~peea----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLH 208 (284)
T PRK09195 141 QEDDLQVDEADALY-TDPAQA----REFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLH 208 (284)
T ss_pred cccCcccccccccC-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEe
Confidence 015 688888 579999999998776442 2345666666654 8999988
No 407
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=87.74 E-value=20 Score=36.59 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred HHHHHHHHHcccCCCcEEEeCCCCCCc------------CCHHHH----HHHHHHHHHHhCCCEEEeCCCccchHHHHHH
Q 016682 140 MLVHCRAVARGAKRPLLVGDLPFGTYE------------SSTNQA----VDTAVRILKEGGMDAIKLEGGSPSRITAARG 203 (384)
Q Consensus 140 Ml~h~raV~Rga~~~~vvaDmPfgsY~------------~s~e~a----v~nA~rl~keaGAdaVKLEgg~~e~~~~I~a 203 (384)
+...+++|++..|.-+|++|.=+-.|. .+.+++ .+.|.... ++|||.|--.|=-+.++..||.
T Consensus 91 v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A-~AGADiVAPSdMMDGrV~aIR~ 169 (314)
T cd00384 91 VQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKDDYVDNDATLELLAKIAVSHA-EAGADIVAPSDMMDGRVAAIRE 169 (314)
T ss_pred HHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCCcCccHHHHHHHHHHHHHHH-HcCCCeeecccccccHHHHHHH
Confidence 456778888888888888998554441 223333 34444445 6999999876532335666665
Q ss_pred HHH-cCCceeeeccCCcccc---cc-cCCccc-------cC-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-H
Q 016682 204 IVE-AGIAVMGHVGLTPQAI---SV-LGGFRP-------QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-P 263 (384)
Q Consensus 204 lv~-aGIPV~gHiGLtPQ~~---~~-lgGfrv-------qG-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp-~ 263 (384)
..+ +|. .|+++.+=+. +. .|=||- .| | +....++.++.+..=.+=|||+|.+- +.| -
T Consensus 170 aLd~~g~---~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~YL 246 (314)
T cd00384 170 ALDEAGF---SDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAYL 246 (314)
T ss_pred HHHHCCC---CCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHH
Confidence 554 442 2333333221 11 122221 11 1 12334788888888888999999886 778 8
Q ss_pred HHHHHHHhhcCCCEEEE
Q 016682 264 PVAAAATSALQIPTIGI 280 (384)
Q Consensus 264 ela~~It~~l~IPtIGI 280 (384)
++++.+.++.++|+...
T Consensus 247 DIi~~~k~~~~~PvaaY 263 (314)
T cd00384 247 DIIRDVRERFDLPVAAY 263 (314)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 99999999999999876
No 408
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=87.73 E-value=21 Score=36.55 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=77.2
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|||.|=+| +|...+ +| ...++.+.+....+.+++--. . ..+ -++ +.+ ++
T Consensus 31 ia~~L~~~GV~~IE~G---------~p~~~~---~~-~e~i~~i~~~~~~~~i~~~~r---~--~~~-di~---~a~-~~ 87 (378)
T PRK11858 31 IARMLDEIGVDQIEAG---------FPAVSE---DE-KEAIKAIAKLGLNASILALNR---A--VKS-DID---ASI-DC 87 (378)
T ss_pred HHHHHHHhCCCEEEEe---------CCCcCh---HH-HHHHHHHHhcCCCeEEEEEcc---c--CHH-HHH---HHH-hC
Confidence 4677899999999887 232222 22 223344443222333333321 1 222 233 333 68
Q ss_pred CCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+-... +...+.|+.+.+.|+.|+.. +. -.+|++ -+.+++-++
T Consensus 88 g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~----~e---------d~~r~~--~~~l~~~~~ 152 (378)
T PRK11858 88 GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS----AE---------DASRTD--LDFLIEFAK 152 (378)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE----ec---------cCCCCC--HHHHHHHHH
Confidence 99999986542 22345677777889888743 11 123442 356777788
Q ss_pred HHHHcCCcEEEec-C----CCH---HHHHHHHhhcCCC
Q 016682 247 ALQEVGCFSVVLE-C----VPP---PVAAAATSALQIP 276 (384)
Q Consensus 247 AleeAGAf~IvlE-~----Vp~---ela~~It~~l~IP 276 (384)
++.++||+.|.+- . .|. ++.+.+.+.+++|
T Consensus 153 ~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 190 (378)
T PRK11858 153 AAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP 190 (378)
T ss_pred HHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCe
Confidence 8889999999876 2 253 4455555665555
No 409
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=87.63 E-value=28 Score=33.65 Aligned_cols=125 Identities=21% Similarity=0.151 Sum_probs=77.6
Q ss_pred CCcEEEEecCChHHHHHHH------HcCCCEE--EecchhhhhhccCCC---CcCCCHHHHHHHHHHHHcccCCCcEEEe
Q 016682 91 GEPITMVTAYDYPSAVHLD------SAGIDIC--LVGDSAAMVVHGHDT---TLPITLEEMLVHCRAVARGAKRPLLVGD 159 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae------~AGiD~I--lVGDSl~mv~lG~~d---T~~VtldeMl~h~raV~Rga~~~~vvaD 159 (384)
-++|.-+||.|.....+-+ ++|++=| +.||..... .+++ ....+--|++...+... +.....-++-
T Consensus 59 ~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~--~~~~~~~~~~~~a~~Li~~i~~~~-~~~~~igva~ 135 (274)
T cd00537 59 IEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKGG--DQPGAKPVGFVYAVDLVELIRKEN-GGGFSIGVAA 135 (274)
T ss_pred CCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHhc-CCCCcccccc
Confidence 4689999999999877655 7799944 579977532 1222 23445566666666442 2223333355
Q ss_pred CCCCCCcCC-HHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCc
Q 016682 160 LPFGTYESS-TNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTP 219 (384)
Q Consensus 160 mPfgsY~~s-~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtP 219 (384)
-|-+..... .+.-++.-.+=+ ++||+-+-.-=.. +...+.++.+.+.||.|-.+.|++|
T Consensus 136 yPe~hp~~~~~~~~~~~L~~Ki-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p 197 (274)
T cd00537 136 YPEGHPEAPSLEEDIKRLKRKV-DAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMP 197 (274)
T ss_pred CCCcCCCCCCHHHHHHHHHHHH-HCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccc
Confidence 665554333 555555444444 5788887653211 4556677778889987778899999
No 410
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.49 E-value=9.2 Score=37.90 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=79.2
Q ss_pred CcEEEEe--cCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC--CcEEEeCCC-----
Q 016682 92 EPITMVT--AYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR--PLLVGDLPF----- 162 (384)
Q Consensus 92 ~~I~mlT--AyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~--~~vvaDmPf----- 162 (384)
-|+.+=. +.|.-..+.+=++||+.|..-. ...+++|.+..++.|++-+.. .-|-+-+..
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~------------s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~e 142 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDG------------SHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIE 142 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECC------------CCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcc
Confidence 4555442 3356666666688888886643 345899999999988733221 113322222
Q ss_pred -------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeeeccCCccccccc
Q 016682 163 -------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGHVGLTPQAISVL 225 (384)
Q Consensus 163 -------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~l 225 (384)
.+| .|++++ .+++++.|+|.+=+-=|. .--.+.++.+.+. +||++.|=
T Consensus 143 d~~~g~~~~~-t~~eea----~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hG---------- 207 (282)
T TIGR01859 143 DGVDEKEAEL-ADPDEA----EQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHG---------- 207 (282)
T ss_pred cccccccccc-CCHHHH----HHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEEC----------
Confidence 346 589988 457766899998754221 2235677777754 79999983
Q ss_pred CCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 226 GGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 226 gGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
| -|-++ ++.+..-++|++.|-+=
T Consensus 208 -g---SGi~~-------e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 208 -A---SGIPE-------EQIKKAIKLGIAKINID 230 (282)
T ss_pred -C---CCCCH-------HHHHHHHHcCCCEEEEC
Confidence 1 12232 23444566788877654
No 411
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.46 E-value=24 Score=32.68 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=65.0
Q ss_pred HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 016682 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (384)
Q Consensus 106 ~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGA 185 (384)
+.+.++|+|++.+---.+ .-++..++..++ ..|. ..+++.++..-+.......-++...++..+-|+
T Consensus 74 ~~~~~~gad~vtvh~e~g----------~~~l~~~i~~~~--~~g~-~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~ 140 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTG----------RDSLKAVVEAAA--ESGG-KVFVVVEMSHPGALEFIQPHADKLAKLAQEAGA 140 (215)
T ss_pred HHHHhCCCCEEEEcCcCC----------HHHHHHHHHHHH--hcCC-eEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 455689999997642111 112333443333 1233 344556654311112334556777788888999
Q ss_pred CEEEeCCCccchHHHHHHHHHc-CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 186 DAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 186 daVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
++.++... ..++|+.+.+. +-+++ . ..||.+.+|.+ .+.+.++||+.+++=
T Consensus 141 ~g~~~~~~---~~~~i~~l~~~~~~~~~---------i-vdgGI~~~g~~----------~~~~~~aGad~iV~G 192 (215)
T PRK13813 141 FGVVAPAT---RPERVRYIRSRLGDELK---------I-ISPGIGAQGGK----------AADAIKAGADYVIVG 192 (215)
T ss_pred CeEEECCC---cchhHHHHHHhcCCCcE---------E-EeCCcCCCCCC----------HHHHHHcCCCEEEEC
Confidence 99998654 35666666542 11111 1 34566666543 555667899977653
No 412
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=87.37 E-value=6.7 Score=40.37 Aligned_cols=137 Identities=27% Similarity=0.344 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCc------------------------------cchHHHHHHHHHcCCceeeeccCCccc
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGS------------------------------PSRITAARGIVEAGIAVMGHVGLTPQA 221 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~------------------------------~e~~~~I~alv~aGIPV~gHiGLtPQ~ 221 (384)
...+|.+..+++|.|+|-|-|.- .|.++.|++.+....||.-- |+|-.
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~R--ls~~d 227 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVR--LSPDD 227 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEE--ECccc
Confidence 44556666668999999999851 44555555555566666543 44432
Q ss_pred ccccCCccccCCCHHHHHHHHHHHHHHHHcC-CcEEEecC--------CC--H-----HHHHHHHhhcCCCEEEEcCCCC
Q 016682 222 ISVLGGFRPQGKNVTSAVKVVETALALQEVG-CFSVVLEC--------VP--P-----PVAAAATSALQIPTIGIGAGPF 285 (384)
Q Consensus 222 ~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG-Af~IvlE~--------Vp--~-----ela~~It~~l~IPtIGIGAG~~ 285 (384)
. ..+ .|-+ .++.++-++.|++.| ++.|-+-. ++ . +.++.|...+.+|||.-|....
T Consensus 228 ~-~~~----~g~~---~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~ 299 (363)
T COG1902 228 F-FDG----GGLT---IEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGIND 299 (363)
T ss_pred c-CCC----CCCC---HHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCC
Confidence 2 111 1444 346677889999999 57664321 11 1 5677788889999998876443
Q ss_pred CC--chhhhH--hhhhcCCCCCCCCCCCcchhhhhhhhHH
Q 016682 286 CS--GQVLVY--HDLLGMMQHPHHAKVTPKFCKQFARVGD 321 (384)
Q Consensus 286 cD--GQvLV~--~DlLG~~~~P~~~~~~PkFvk~y~~~~~ 321 (384)
-| -++|=- -||+|+.. |- -.-|.|+++-.+...
T Consensus 300 ~~~Ae~~l~~g~aDlVa~gR-~~--ladP~~~~k~~~g~~ 336 (363)
T COG1902 300 PEQAEEILASGRADLVAMGR-PF--LADPDLVLKAAEGRE 336 (363)
T ss_pred HHHHHHHHHcCCCCEEEech-hh--hcCccHHHHHHcCCC
Confidence 22 233333 69999973 11 124888887665543
No 413
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=87.27 E-value=11 Score=37.52 Aligned_cols=115 Identities=20% Similarity=0.303 Sum_probs=67.1
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe--cchhhhhhccCCCCcCCCHHHHHHHHHHHHccc----CC
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV--GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA----KR 153 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV--GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga----~~ 153 (384)
-+.-++..++. .-+|++=++|.-.|+...+||+|+|.+ |=..+ -..|.++ ..|++|.+..++.|.+++ +.
T Consensus 139 EVemi~~A~~~-gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~g-G~~Ga~~--~~sl~~a~~~~~~i~~aa~~v~~d 214 (268)
T PF09370_consen 139 EVEMIRKAHEK-GLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTG-GSIGAKT--ALSLEEAAERIQEIFDAARAVNPD 214 (268)
T ss_dssp HHHHHHHHHHT-T-EE--EE-SHHHHHHHHHHT-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHHC-CCeeeeeecCHHHHHHHHHcCCCEEEecCCccCC-CCcCccc--cCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35557766655 599999999999999999999999974 32221 1234443 579999999988886653 44
Q ss_pred CcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC-CCEEEeCCCccchHHHHHHHHH
Q 016682 154 PLLVGDLPFGTYESSTNQAVDTAVRILKEGG-MDAIKLEGGSPSRITAARGIVE 206 (384)
Q Consensus 154 ~~vvaDmPfgsY~~s~e~av~nA~rl~keaG-AdaVKLEgg~~e~~~~I~alv~ 206 (384)
.++.+. |+-=.+|+++ ..+++.+. +++. +-+.+-|..|+=+++.+
T Consensus 215 ii~l~h---GGPI~~p~D~----~~~l~~t~~~~Gf-~G~Ss~ERlP~E~ai~~ 260 (268)
T PF09370_consen 215 IIVLCH---GGPIATPEDA----QYVLRNTKGIHGF-IGASSMERLPVERAITE 260 (268)
T ss_dssp -EEEEE---CTTB-SHHHH----HHHHHH-TTEEEE-EESTTTTHHHHHHHHHH
T ss_pred eEEEEe---CCCCCCHHHH----HHHHhcCCCCCEE-ecccchhhccHHHHHHH
Confidence 555554 5555789988 45777665 7885 43444566665555543
No 414
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=87.26 E-value=2.4 Score=41.72 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=40.6
Q ss_pred eeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC---------CHH-------HHHHHHhhcCC
Q 016682 212 MGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV---------PPP-------VAAAATSALQI 275 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V---------p~e-------la~~It~~l~I 275 (384)
|-|+.=.|-+.... |.=++-.+.++++|++|+++|.|+|.+|.. +.+ ++.+|.+.+++
T Consensus 8 mvHL~pLPGsp~~~------~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~ 81 (254)
T PF03437_consen 8 MVHLPPLPGSPRYD------GSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSV 81 (254)
T ss_pred EEcCCCCCcCCCCC------CCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45766555443322 211334578999999999999999999973 122 33456678889
Q ss_pred CEEEE
Q 016682 276 PTIGI 280 (384)
Q Consensus 276 PtIGI 280 (384)
| +|+
T Consensus 82 p-~GV 85 (254)
T PF03437_consen 82 P-VGV 85 (254)
T ss_pred C-EEe
Confidence 8 444
No 415
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=87.25 E-value=25 Score=34.87 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=79.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
|+.++++|+|.|=+|... .|.-.+-.-++ -..++.+.+. +..-+.+=.| +.+. ++ +.+ ++|
T Consensus 32 a~~L~~~Gv~~IEvgsf~------~p~~~p~~~d~-~e~~~~l~~~-~~~~~~~l~~------~~~~-ie---~A~-~~g 92 (287)
T PRK05692 32 IDRLSAAGLSYIEVASFV------SPKWVPQMADA-AEVMAGIQRR-PGVTYAALTP------NLKG-LE---AAL-AAG 92 (287)
T ss_pred HHHHHHcCCCEEEeCCCc------CcccccccccH-HHHHHhhhcc-CCCeEEEEec------CHHH-HH---HHH-HcC
Confidence 566899999999998321 33322221121 2333444432 2221211111 3222 22 334 689
Q ss_pred CCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 185 MDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 185 AdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
++.|.+-... +...+.|+.+.+.|+.|.+.|..+ ++. -.-|+++ .+.+++-++.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~------~~~-~~~~~~~--~~~~~~~~~~ 163 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCV------LGC-PYEGEVP--PEAVADVAER 163 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEE------ecC-CCCCCCC--HHHHHHHHHH
Confidence 9999987542 124456777778899988765431 110 1134443 4678888999
Q ss_pred HHHcCCcEEEec-C----CCH---HHHHHHHhhcC
Q 016682 248 LQEVGCFSVVLE-C----VPP---PVAAAATSALQ 274 (384)
Q Consensus 248 leeAGAf~IvlE-~----Vp~---ela~~It~~l~ 274 (384)
++++||+.|.+. . .|. ++.+.+.++++
T Consensus 164 ~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 164 LFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCC
Confidence 999999999987 2 253 44445555554
No 416
>PRK06852 aldolase; Validated
Probab=87.10 E-value=6.4 Score=39.75 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHccc---CCCcEEEeCCCCCCcCCH--HHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHH-c-
Q 016682 138 EEMLVHCRAVARGA---KRPLLVGDLPFGTYESST--NQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVE-A- 207 (384)
Q Consensus 138 deMl~h~raV~Rga---~~~~vvaDmPfgsY~~s~--e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~-a- 207 (384)
.+|+.....|++-+ ..|+|+-=.|.|.+-.+. -+.+..|.|+--|-|||.||+-=-. ....+..+.+++ +
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g 229 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAG 229 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCC
Confidence 56776666665443 467666567777652221 2588889999889999999996310 023566666776 4
Q ss_pred CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHH-HHcCCcEEEe
Q 016682 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALAL-QEVGCFSVVL 258 (384)
Q Consensus 208 GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAl-eeAGAf~Ivl 258 (384)
.+||+ ..||=+. + .+++++..+.. +++||.++.+
T Consensus 230 ~vpVv-----------iaGG~k~---~---~~e~L~~v~~ai~~aGa~Gv~~ 264 (304)
T PRK06852 230 RTKVV-----------CAGGSST---D---PEEFLKQLYEQIHISGASGNAT 264 (304)
T ss_pred CCcEE-----------EeCCCCC---C---HHHHHHHHHHHHHHcCCceeee
Confidence 57775 3455322 2 24677777755 4499999875
No 417
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=87.07 E-value=29 Score=33.26 Aligned_cols=93 Identities=24% Similarity=0.330 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcccCCCc--EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHc---C
Q 016682 137 LEEMLVHCRAVARGAKRPL--LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEA---G 208 (384)
Q Consensus 137 ldeMl~h~raV~Rga~~~~--vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~a---G 208 (384)
+++...-.++|++.....+ |+-..|+ .+.++ +..+.++..++|+|-||.--|. ....+.|+.+.+. .
T Consensus 105 ~~~v~~ei~~v~~~~~~~~lKvIlEt~~----L~~e~-i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~ 179 (221)
T PRK00507 105 WDAVEADIRAVVEAAGGAVLKVIIETCL----LTDEE-KVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPR 179 (221)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCc----CCHHH-HHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 6777777777776432111 3345554 45555 4666777779999999995431 1234455555442 2
Q ss_pred CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 209 IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 209 IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
+++- .-||. || +++|..|.+|||+-|
T Consensus 180 ~~IK-----------asGGI----rt-------~~~a~~~i~aGA~ri 205 (221)
T PRK00507 180 VGVK-----------ASGGI----RT-------LEDALAMIEAGATRL 205 (221)
T ss_pred ceEE-----------eeCCc----CC-------HHHHHHHHHcCcceE
Confidence 2221 13433 44 567888889999865
No 418
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.03 E-value=30 Score=33.47 Aligned_cols=114 Identities=11% Similarity=-0.031 Sum_probs=69.4
Q ss_pred CCcEEEEecCChHHHHHHHHcC----CCEEEecchhhhh----hccCCCCcCCCHHHHH----HHHHHHHcccCCCcEEE
Q 016682 91 GEPITMVTAYDYPSAVHLDSAG----IDICLVGDSAAMV----VHGHDTTLPITLEEML----VHCRAVARGAKRPLLVG 158 (384)
Q Consensus 91 g~~I~mlTAyD~~sA~iae~AG----iD~IlVGDSl~mv----~lG~~dT~~VtldeMl----~h~raV~Rga~~~~vva 158 (384)
+.++.++.=........+-++| +|.|-+-+++.-. .+| .|.++.+ ..++.+++ .. .-|..
T Consensus 61 ~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~------~~~~~~~~~~~~~i~~a~~-~G-~~v~~ 132 (268)
T cd07940 61 NAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK------KTREEVLERAVEAVEYAKS-HG-LDVEF 132 (268)
T ss_pred CCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHH-cC-CeEEE
Confidence 4666766533344455566778 9998665544322 123 2334433 33333322 12 22557
Q ss_pred eCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-C---Cceeee
Q 016682 159 DLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-G---IAVMGH 214 (384)
Q Consensus 159 DmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-G---IPV~gH 214 (384)
..|+.+. .+++...+.+.++. +.|++.|.|-|-. .+..+.++.+.+. + ||+--|
T Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 133 SAEDATR-TDLDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred eeecCCC-CCHHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 7777555 68888888887776 7999999999852 5566777777764 3 776666
No 419
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=86.89 E-value=8.1 Score=38.79 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=56.0
Q ss_pred HHHHHhhhC-CCcEEE---EecCChHHHHHHHHcCCCEEEecchhhhh-h-----ccCC---------CCcCCCHHHHHH
Q 016682 82 THLRQKHKN-GEPITM---VTAYDYPSAVHLDSAGIDICLVGDSAAMV-V-----HGHD---------TTLPITLEEMLV 142 (384)
Q Consensus 82 ~~lr~~k~~-g~~I~m---lTAyD~~sA~iae~AGiD~IlVGDSl~mv-~-----lG~~---------dT~~VtldeMl~ 142 (384)
..++...+. +-|+++ -+..+...|+.++++|+|.|.|+-..|.. . -+.. ....++.-+.+.
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLL 247 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHH
Confidence 445555554 567776 23367889999999999999875433311 1 0110 011222223333
Q ss_pred HHHHHHccc-CCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC
Q 016682 143 HCRAVARGA-KRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE 191 (384)
Q Consensus 143 h~raV~Rga-~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE 191 (384)
.+ ++.. +.| |+++ |+. .+..+++ +.+ ..||++|-+-
T Consensus 248 ~~---~~~~~~ip-Iias---GGI-r~~~dv~----kal-~lGAd~V~i~ 284 (326)
T cd02811 248 EV---RSALPDLP-LIAS---GGI-RNGLDIA----KAL-ALGADLVGMA 284 (326)
T ss_pred HH---HHHcCCCc-EEEE---CCC-CCHHHHH----HHH-HhCCCEEEEc
Confidence 33 3333 444 8887 667 3777773 566 4799999983
No 420
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=86.87 E-value=1.4 Score=42.60 Aligned_cols=172 Identities=18% Similarity=0.186 Sum_probs=97.0
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHH----HcCCCEEEecchhhhhhccCCCCcCCCHHH--HHHHHHHH-----Hc
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLD----SAGIDICLVGDSAAMVVHGHDTTLPITLEE--MLVHCRAV-----AR 149 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae----~AGiD~IlVGDSl~mv~lG~~dT~~Vtlde--Ml~h~raV-----~R 149 (384)
++++......+-.|+-.++-|..|..-++ +.|=+.+.+- ..|+..|++.+ +....+.. ..
T Consensus 16 ~p~l~~~l~~~v~i~e~G~LDgls~~eI~~~aP~~ge~vLvTr---------L~DG~~V~ls~~~v~~~lq~~i~~le~~ 86 (221)
T PF07302_consen 16 TPELTEILGEGVEIVEAGALDGLSREEIAALAPEPGEYVLVTR---------LRDGTQVVLSKKKVEPRLQACIAQLEAQ 86 (221)
T ss_pred HHHHHHHcCCCceEEEeccCCCCCHHHHHHhCCCCCCceeEEE---------eCCCCEEEEEHHHHHHHHHHHHHHHHHC
Confidence 45666666565578888888888876553 2344444432 34444444332 22333321 23
Q ss_pred ccCCCcEEEeCCCCCCc-----CCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHH-HHHHHcCCceeeeccCCccccc
Q 016682 150 GAKRPLLVGDLPFGTYE-----SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAA-RGIVEAGIAVMGHVGLTPQAIS 223 (384)
Q Consensus 150 ga~~~~vvaDmPfgsY~-----~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I-~alv~aGIPV~gHiGLtPQ~~~ 223 (384)
|.+.-++.+==.|..+. .-|+..+.+.+.-+-..+--||-.-. +++.+.. +.-...+.+++. ..
T Consensus 87 G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~--~eQ~~~~~~kW~~l~~~~~~--------a~ 156 (221)
T PF07302_consen 87 GYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPL--PEQIAQQAEKWQPLGNPVVV--------AA 156 (221)
T ss_pred CCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecC--HHHHHHHHHHHHhcCCCeEE--------EE
Confidence 44444444333333332 23677777777666333333443322 3444422 222233444431 11
Q ss_pred ccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcCCCEE
Q 016682 224 VLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTI 278 (384)
Q Consensus 224 ~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~IPtI 278 (384)
... | . ....++.+.|+.|.+.||+.|++.|+- .+.-+.+.+.+++|++
T Consensus 157 asP-y--~----~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVl 206 (221)
T PF07302_consen 157 ASP-Y--E----GDEEELAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVL 206 (221)
T ss_pred eCC-C--C----CCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEE
Confidence 111 1 1 134689999999999999999999994 7777778888999997
No 421
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.60 E-value=7 Score=38.90 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVT 236 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~ 236 (384)
++++.++.+.++. +.|.+++||--|. ++..+.|++++++ +++++- . .- +|-+.
T Consensus 139 ~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~v-------D--aN-----~~~~~- 202 (357)
T cd03316 139 SPEELAEEAKRAV-AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMV-------D--AN-----GRWDL- 202 (357)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEE-------E--CC-----CCCCH-
Confidence 6888888887776 6899999997542 2356778888864 455542 1 11 23344
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcCCCEE
Q 016682 237 SAVKVVETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTI 278 (384)
Q Consensus 237 ~a~~ll~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~IPtI 278 (384)
+++++-++.+++.|.+.|.=++.+ -+..+.|.+++++|++
T Consensus 203 --~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~ipi~ 244 (357)
T cd03316 203 --AEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATSVPIA 244 (357)
T ss_pred --HHHHHHHHHhCccCCCeEcCCCCccCHHHHHHHHHhCCCCEE
Confidence 445566677777776544322323 4677899999999976
No 422
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=86.57 E-value=15 Score=36.58 Aligned_cols=108 Identities=13% Similarity=0.200 Sum_probs=71.6
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCC---
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPF--- 162 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPf--- 162 (384)
.+-|+++= -+.|+-..+-+-++||+-|.. |....+++|-+..++.|++-+..- .|=+-+..
T Consensus 71 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~------------DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 138 (282)
T TIGR01858 71 YNMPLALHLDHHESLDDIRQKVHAGVRSAMI------------DGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG 138 (282)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEee------------cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC
Confidence 34565544 467777778888888888865 345678999999999987655311 01111111
Q ss_pred -----------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 163 -----------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 -----------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
..| .+|+++ .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 139 ~e~~~~~~~~~~~~-T~peea----~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlH 206 (282)
T TIGR01858 139 VEDDLSVDEEDALY-TDPQEA----KEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLH 206 (282)
T ss_pred ccCCCccccchhcc-CCHHHH----HHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEe
Confidence 116 688888 579999999998776442 2234566666643 8999988
No 423
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=86.55 E-value=26 Score=35.84 Aligned_cols=162 Identities=18% Similarity=0.272 Sum_probs=91.3
Q ss_pred HHHcCCCEEE-ec-------chhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCc-------------
Q 016682 108 LDSAGIDICL-VG-------DSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYE------------- 166 (384)
Q Consensus 108 ae~AGiD~Il-VG-------DSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~------------- 166 (384)
+.+.|+..++ -| |..|...+ ...+ -+...+++|+...|.-+|++|.=+-.|.
T Consensus 66 ~~~~GI~~v~lFgvi~~~~Kd~~gs~a~--~~~g-----~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g 138 (324)
T PF00490_consen 66 AVDLGIRAVILFGVIDPSKKDEEGSEAY--NPDG-----LVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDG 138 (324)
T ss_dssp HHHTT--EEEEEEE-SCSC-BSS-GGGG--STTS-----HHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTS
T ss_pred HHHCCCCEEEEEeeCCcccCCcchhccc--CCCC-----hHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCC
Confidence 5677898885 33 33333222 1111 2356677788888998888997543331
Q ss_pred -CCHHHH----HHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHH-cC---CceeeeccCCccccccc-CCccc------
Q 016682 167 -SSTNQA----VDTAVRILKEGGMDAIKLEGGSPSRITAARGIVE-AG---IAVMGHVGLTPQAISVL-GGFRP------ 230 (384)
Q Consensus 167 -~s~e~a----v~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aG---IPV~gHiGLtPQ~~~~l-gGfrv------ 230 (384)
.+.+++ .+.|.... ++|||.|--.|=.+-.+..||...+ +| +++|.. ..-..+.+ |=||-
T Consensus 139 ~idND~Tl~~Lak~Al~~A-~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSY---saKyaS~fYGPFRdAa~Sap 214 (324)
T PF00490_consen 139 EIDNDETLERLAKQALSHA-EAGADIVAPSDMMDGRVGAIREALDEAGFSDVPIMSY---SAKYASAFYGPFRDAAGSAP 214 (324)
T ss_dssp SBEHHHHHHHHHHHHHHHH-HHT-SEEEE-S--TTHHHHHHHHHHHTTCTTSEEEEE---EEEB-SSTGHHHHHHHT-HH
T ss_pred eEecHHHHHHHHHHHHHHH-HhCCCeeccccccCCHHHHHHHHHHhCCCCCccEEec---hHHHhhhhhHhHHHHhcCCc
Confidence 223333 34444445 6999999887632335666666554 43 444433 11222211 11211
Q ss_pred -cC-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-HHHHHHHHhhcCCCEEEE
Q 016682 231 -QG-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP-PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 231 -qG-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp-~ela~~It~~l~IPtIGI 280 (384)
.| | +....++.++.+..=.+=|||+|.+. +.| -++++.+.+++.+|+...
T Consensus 215 ~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~~P~~aY 273 (324)
T PF00490_consen 215 KFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALPYLDIIRRVKERFDLPVAAY 273 (324)
T ss_dssp SSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGGGHHHHHHHHHHCTS-EEEE
T ss_pred cccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchhHHHHHHHHHHhcCCCEEEE
Confidence 12 1 22345788888888889999999986 778 899999999999999866
No 424
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=86.49 E-value=11 Score=38.47 Aligned_cols=160 Identities=10% Similarity=0.060 Sum_probs=88.3
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEe-cch---hhhhhccC----CCCcCCCHH----HHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLV-GDS---AAMVVHGH----DTTLPITLE----EMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlV-GDS---l~mv~lG~----~dT~~Vtld----eMl~h~ 144 (384)
+.+|..++.+..+. | ...|+.+.+||||.|-+ |.. +...+--+ .|-=.=|+| -.++.+
T Consensus 147 ~~mt~~eI~~ii~~---------f-~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv 216 (362)
T PRK10605 147 RALELEEIPGIVND---------F-RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVV 216 (362)
T ss_pred ccCCHHHHHHHHHH---------H-HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHH
Confidence 46888888877653 1 34788999999999943 211 11111111 111011333 234555
Q ss_pred HHHHcccCCCcEEEeC------CC--CCCcCCHHH-HHHHHHHHHHHhCCCEEEeCCCc--------cchHHHHHHHHHc
Q 016682 145 RAVARGAKRPLLVGDL------PF--GTYESSTNQ-AVDTAVRILKEGGMDAIKLEGGS--------PSRITAARGIVEA 207 (384)
Q Consensus 145 raV~Rga~~~~vvaDm------Pf--gsY~~s~e~-av~nA~rl~keaGAdaVKLEgg~--------~e~~~~I~alv~a 207 (384)
++|++.++.-+|..=| ++ +++ +.++ +++-+..|- +.|+|.|.+-.+. ....+.|+..+
T Consensus 217 ~aVr~~vg~~~igvRis~~~~~~~~~~G~--~~~e~~~~~~~~L~-~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~-- 291 (362)
T PRK10605 217 DAGIAEWGADRIGIRISPLGTFNNVDNGP--NEEADALYLIEQLG-KRGIAYLHMSEPDWAGGEPYSDAFREKVRARF-- 291 (362)
T ss_pred HHHHHHcCCCeEEEEECCccccccCCCCC--CHHHHHHHHHHHHH-HcCCCEEEeccccccCCccccHHHHHHHHHHC--
Confidence 6666666543444322 11 233 6677 677776654 6899999998641 11233344433
Q ss_pred CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec--CC-CHHHHHHHHhhc
Q 016682 208 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE--CV-PPPVAAAATSAL 273 (384)
Q Consensus 208 GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE--~V-p~ela~~It~~l 273 (384)
++||++- |+ .|.+.++++|+ +-.||+|-+= .+ .+++.+.+.+..
T Consensus 292 ~~pv~~~-----------G~-----~~~~~ae~~i~------~G~~D~V~~gR~~iadPd~~~k~~~g~ 338 (362)
T PRK10605 292 HGVIIGA-----------GA-----YTAEKAETLIG------KGLIDAVAFGRDYIANPDLVARLQRKA 338 (362)
T ss_pred CCCEEEe-----------CC-----CCHHHHHHHHH------cCCCCEEEECHHhhhCccHHHHHhcCC
Confidence 6788742 22 24445555443 3348988875 33 578878877643
No 425
>PRK15452 putative protease; Provisional
Probab=86.44 E-value=48 Score=35.11 Aligned_cols=175 Identities=13% Similarity=0.072 Sum_probs=102.8
Q ss_pred cEEEEecCChHHHHHHHHcCCCEEEecc-hhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHH
Q 016682 93 PITMVTAYDYPSAVHLDSAGIDICLVGD-SAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (384)
Q Consensus 93 ~I~mlTAyD~~sA~iae~AGiD~IlVGD-Sl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~ 171 (384)
|=.+..|-|....+.+-++|+|.|.+|- +.++-.. ....+.+|+-..++-. +..... |..=+|--.++...+.
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~----~~~f~~edl~eav~~a-h~~g~k-vyvt~n~i~~e~el~~ 77 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVR----NNEFNHENLALGINEA-HALGKK-FYVVVNIAPHNAKLKT 77 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhh----ccCCCHHHHHHHHHHH-HHcCCE-EEEEecCcCCHHHHHH
Confidence 4466778899999999999999998763 3433221 1345667766555533 222223 2233332234323333
Q ss_pred HHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 172 AVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
..+.. +.+.+.|+|+|-+-+ ...+..+.+. ++|+.+-.. +.- .+ ...++.|.
T Consensus 78 ~~~~l-~~l~~~gvDgvIV~d-----~G~l~~~ke~~p~l~ih~stq--------lni-----~N-------~~a~~f~~ 131 (443)
T PRK15452 78 FIRDL-EPVIAMKPDALIMSD-----PGLIMMVREHFPEMPIHLSVQ--------ANA-----VN-------WATVKFWQ 131 (443)
T ss_pred HHHHH-HHHHhCCCCEEEEcC-----HHHHHHHHHhCCCCeEEEEec--------ccC-----CC-------HHHHHHHH
Confidence 44433 344479999999965 3345566654 566643211 110 11 23567888
Q ss_pred HcCCcEEEecC-CCHHHHHHHHhhc-CCCEEEEcCCCCC---CchhhhHhhhhcC
Q 016682 250 EVGCFSVVLEC-VPPPVAAAATSAL-QIPTIGIGAGPFC---SGQVLVYHDLLGM 299 (384)
Q Consensus 250 eAGAf~IvlE~-Vp~ela~~It~~l-~IPtIGIGAG~~c---DGQvLV~~DlLG~ 299 (384)
+.|+..++|.- ++-+.++.|.+++ ++++=.|--|.-| +||=++.+=+-|-
T Consensus 132 ~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfVHGalc~m~Sg~Clls~~~~~r 186 (443)
T PRK15452 132 QMGLTRVILSRELSLEEIEEIRQQCPDMELEVFVHGALCMAYSGRCLLSGYINKR 186 (443)
T ss_pred HCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEEEccchheeeCcchHHHHhhcC
Confidence 99999999875 5777778888765 5665444444433 7777766555443
No 426
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=86.43 E-value=22 Score=36.35 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=87.0
Q ss_pred HHHHHHHHcccCCCcEEEeCCCCCCc-------------CCHH----HHHHHHHHHHHHhCCCEEEeCCCccchHHHHHH
Q 016682 141 LVHCRAVARGAKRPLLVGDLPFGTYE-------------SSTN----QAVDTAVRILKEGGMDAIKLEGGSPSRITAARG 203 (384)
Q Consensus 141 l~h~raV~Rga~~~~vvaDmPfgsY~-------------~s~e----~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~a 203 (384)
...+++|.+..|.-+|++|.=+-.|. .+.+ ...+.|.... ++|||.|--.|=-+-++..||.
T Consensus 95 ~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A-~AGADiVAPSdMMDGrV~aIR~ 173 (320)
T cd04824 95 IQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYA-KAGAHIVAPSDMMDGRVRAIKQ 173 (320)
T ss_pred HHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHH-HhCCCEEecccccccHHHHHHH
Confidence 56678888888888899997553331 1223 3334455555 6999999877532335666665
Q ss_pred HHH-cC----CceeeeccCCcccccc-cCCcccc-------C-C-----CHHHHHHHHHHHHHHHHcCCcEEEec-CCC-
Q 016682 204 IVE-AG----IAVMGHVGLTPQAISV-LGGFRPQ-------G-K-----NVTSAVKVVETALALQEVGCFSVVLE-CVP- 262 (384)
Q Consensus 204 lv~-aG----IPV~gHiGLtPQ~~~~-lgGfrvq-------G-r-----t~~~a~~ll~rAkAleeAGAf~IvlE-~Vp- 262 (384)
..+ +| +++|.+ ..-..+. .|=||-- | | +....+++++.+..=.+=|||+|.+. +.|
T Consensus 174 aLD~~G~~~~v~ImSY---saKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~Y 250 (320)
T cd04824 174 ALIQAGLGNKVSVMSY---SAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTPY 250 (320)
T ss_pred HHHHCCCccCCeeeeh---HHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCchH
Confidence 554 34 445443 1112221 1222211 2 1 22344788888888889999999886 778
Q ss_pred HHHHHHHHhhc-CCCEEEE
Q 016682 263 PPVAAAATSAL-QIPTIGI 280 (384)
Q Consensus 263 ~ela~~It~~l-~IPtIGI 280 (384)
-++++.+.+++ ++|+...
T Consensus 251 LDIi~~~k~~~~~~PvaaY 269 (320)
T cd04824 251 LDIVREAKDKHPDLPLAVY 269 (320)
T ss_pred HHHHHHHHHhccCCCEEEE
Confidence 89999999999 9999876
No 427
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=86.41 E-value=31 Score=33.83 Aligned_cols=183 Identities=19% Similarity=0.119 Sum_probs=97.8
Q ss_pred CCCcEEEEecCChHHHHH------HHHcCCCEEE--ecchhhhhh-ccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 90 NGEPITMVTAYDYPSAVH------LDSAGIDICL--VGDSAAMVV-HGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 90 ~g~~I~mlTAyD~~sA~i------ae~AGiD~Il--VGDSl~mv~-lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
.-++|.-+||.|...-.+ +..+|++=|| .||....-- +..+........+++...+. ..+-....-++--
T Consensus 70 g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~-~~~~~~~i~va~~ 148 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQ-EYGDDFSIGVAGY 148 (287)
T ss_dssp T--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHH-HHGGGSEEEEEE-
T ss_pred CCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHH-hcCcccccccccC
Confidence 457999999999765433 3578999884 899764422 22222223346677776664 1121122234666
Q ss_pred CCCCC-cCCHHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCc-c------cccccCCccc
Q 016682 161 PFGTY-ESSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTP-Q------AISVLGGFRP 230 (384)
Q Consensus 161 PfgsY-~~s~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtP-Q------~~~~lgGfrv 230 (384)
|.+.. ..+.+.-++.-.+=+ ++||+.+..-=.. +.....++.+.+.||.+=.+.|+.| . +.+.+-|..+
T Consensus 149 P~~hp~~~~~~~~~~~l~~Ki-~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~Gv~i 227 (287)
T PF02219_consen 149 PEGHPEAPDFEAELKRLKKKI-DAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLCGVDI 227 (287)
T ss_dssp TTHHTTCSSHHHHHHHHHHHH-HTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHHT-EE
T ss_pred CCCCccccCHHHHHHHHHHHH-HCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhccCccC
Confidence 65433 234455555444445 6899987653211 3445666777788885555688888 1 1111113222
Q ss_pred --------c-CCCHHH-H-----HHHHHHHHHHHHcCCcEEEecCCC-HHHHHHHHhhcC
Q 016682 231 --------Q-GKNVTS-A-----VKVVETALALQEVGCFSVVLECVP-PPVAAAATSALQ 274 (384)
Q Consensus 231 --------q-Grt~~~-a-----~~ll~rAkAleeAGAf~IvlE~Vp-~ela~~It~~l~ 274 (384)
. .+++++ . +..++-++.+-+.|+.+|-+=.+- ++.+.+|-++++
T Consensus 228 P~~~~~~l~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 228 PDELIERLEEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp EHHHHHHHHTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 1 122222 1 345667778888899999888884 788888887763
No 428
>PRK06801 hypothetical protein; Provisional
Probab=86.39 E-value=15 Score=36.60 Aligned_cols=132 Identities=15% Similarity=0.258 Sum_probs=84.4
Q ss_pred hCCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHccc---CCCcEE------
Q 016682 89 KNGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGA---KRPLLV------ 157 (384)
Q Consensus 89 ~~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga---~~~~vv------ 157 (384)
+..-|+.+= -+.|.....-+=++||+.|.+- ....+++|.+..++.|++-+ ..+ |-
T Consensus 72 ~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D------------~S~l~~eeNi~~t~~v~~~a~~~gv~-VE~ElG~v 138 (286)
T PRK06801 72 RHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFD------------GSTLEYEENVRQTREVVKMCHAVGVS-VEAELGAV 138 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEc------------CCCCCHHHHHHHHHHHHHHHHHcCCe-EEeecCcc
Confidence 344565544 5678888888888899999763 23468999999999885443 222 21
Q ss_pred --EeCC--C---C-C-CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeeeccCC
Q 016682 158 --GDLP--F---G-T-YESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGHVGLT 218 (384)
Q Consensus 158 --aDmP--f---g-s-Y~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gHiGLt 218 (384)
.|.+ . + + | .+|+++ .++++++|+|.+.+-=|. ..-.++++.+.+. ++|++.|
T Consensus 139 gg~e~~v~~~~~~~~~~-T~pe~a----~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlH---- 209 (286)
T PRK06801 139 GGDEGGALYGEADSAKF-TDPQLA----RDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLH---- 209 (286)
T ss_pred cCCCCCcccCCcccccC-CCHHHH----HHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE----
Confidence 1111 0 1 1 4 577777 578888999999993111 2456777777754 7999988
Q ss_pred cccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 219 PQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 219 PQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
||- |-++ ++.+...++|+.-|-+=
T Consensus 210 -------GGS---gi~~-------e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 210 -------GGS---GISD-------ADFRRAIELGIHKINFY 233 (286)
T ss_pred -------CCC---CCCH-------HHHHHHHHcCCcEEEeh
Confidence 331 3333 24455577888877654
No 429
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.38 E-value=27 Score=35.90 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=86.8
Q ss_pred EEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcC--CCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHH
Q 016682 94 ITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLP--ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQ 171 (384)
Q Consensus 94 I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~--VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~ 171 (384)
..+.+--=..-|+.++++|+|.|=+|.-+ .|.-.| -.-+|.+..++.+ .++..+.+ .| +.++
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~v------spk~vPqmad~~ev~~~i~~~-~~~~~~~l---~~------n~~d 126 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFV------SPKWVPQLADAKDVMAAVRNL-EGARFPVL---TP------NLKG 126 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCc------CcccccccccHHHHHHHHHhc-cCCceeEE---cC------CHHH
Confidence 33444434456788999999999999432 221111 1233455444432 12221211 12 3333
Q ss_pred HHHHHHHHHHHhCCCEEEeCCC-------------ccc----hHHHHHHHHHcCCceeeeccCCcccccccCCccccCCC
Q 016682 172 AVDTAVRILKEGGMDAIKLEGG-------------SPS----RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKN 234 (384)
Q Consensus 172 av~nA~rl~keaGAdaVKLEgg-------------~~e----~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt 234 (384)
. + +.+ ++|++.|.+--. .+| ..+.|+.+.+.|+.|.++|... + |.-..|++
T Consensus 127 i-e---~A~-~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~------f-g~p~~~r~ 194 (347)
T PLN02746 127 F-E---AAI-AAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCV------V-GCPIEGPV 194 (347)
T ss_pred H-H---HHH-HcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEee------e-cCCccCCC
Confidence 3 2 334 689999988722 123 3356666668899997764311 1 11123454
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEec-C--C--CH---HHHHHHHhhcCCCEEEE
Q 016682 235 VTSAVKVVETALALQEVGCFSVVLE-C--V--PP---PVAAAATSALQIPTIGI 280 (384)
Q Consensus 235 ~~~a~~ll~rAkAleeAGAf~IvlE-~--V--p~---ela~~It~~l~IPtIGI 280 (384)
+.+.+++-++.+.++||+.|.+- . + |. ++.+.|.++++.+.|++
T Consensus 195 --~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~ 246 (347)
T PLN02746 195 --PPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAV 246 (347)
T ss_pred --CHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 35678888999999999999876 2 2 53 44445555555433555
No 430
>PRK08185 hypothetical protein; Provisional
Probab=86.21 E-value=25 Score=35.06 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=70.6
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHH---cccCCCcEE---EeCC
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLLV---GDLP 161 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~---Rga~~~~vv---aDmP 161 (384)
..-|+++= -+.|+..-+-+=++||+.|..- ....+++|-+..++.|+ +....+ |- +-++
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D------------~S~l~~eeNi~~t~~vv~~a~~~gv~-vE~ElG~vg 133 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMID------------GSLLPYEENVALTKEVVELAHKVGVS-VEGELGTIG 133 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeecc
Confidence 34565544 5667777777778898888764 33569999999999998 322222 11 2222
Q ss_pred C---C-----C---CcCCHHHHHHHHHHHHHHhCCCEEEe---------CCC--ccchHHHHHHHHHc-CCceeee
Q 016682 162 F---G-----T---YESSTNQAVDTAVRILKEGGMDAIKL---------EGG--SPSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 162 f---g-----s---Y~~s~e~av~nA~rl~keaGAdaVKL---------Egg--~~e~~~~I~alv~a-GIPV~gH 214 (384)
. + + | .+|+++ .++++++|+|.+=+ .++ ..-..++++.+.++ +||++.|
T Consensus 134 ~~e~~~~~~~~~~~~-t~peea----~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlH 204 (283)
T PRK08185 134 NTGTSIEGGVSEIIY-TDPEQA----EDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLH 204 (283)
T ss_pred CcccccccccccccC-CCHHHH----HHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEE
Confidence 1 0 1 4 478888 57888889999988 221 12246777777764 8999998
No 431
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=86.17 E-value=29 Score=33.36 Aligned_cols=134 Identities=19% Similarity=0.119 Sum_probs=75.6
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
++.++++|+|.|=+| +|.... ++ ...++.+.+..+..-+.+=.+ .+.+. ++ ...+.|
T Consensus 26 ~~~L~~~Gv~~iE~g---------~p~~~~---~~-~e~~~~l~~~~~~~~~~~~~r-----~~~~~-v~----~a~~~g 82 (259)
T cd07939 26 ARALDEAGVDEIEVG---------IPAMGE---EE-REAIRAIVALGLPARLIVWCR-----AVKED-IE----AALRCG 82 (259)
T ss_pred HHHHHHcCCCEEEEe---------cCCCCH---HH-HHHHHHHHhcCCCCEEEEecc-----CCHHH-HH----HHHhCC
Confidence 566899999999887 222111 11 234455555333332222111 23333 22 334789
Q ss_pred CCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 185 MDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 185 AdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
++.|.+-... +...+.++.+.+.|+.|+.. +. -.+++ .-+.+.+-++.
T Consensus 83 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~--~~-----------~~~~~--~~~~~~~~~~~ 147 (259)
T cd07939 83 VTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVG--AE-----------DASRA--DPDFLIEFAEV 147 (259)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEe--ec-----------cCCCC--CHHHHHHHHHH
Confidence 9999996431 12335667777889887632 11 12333 24577778888
Q ss_pred HHHcCCcEEEec---C--CCHHH---HHHHHhhcCCC
Q 016682 248 LQEVGCFSVVLE---C--VPPPV---AAAATSALQIP 276 (384)
Q Consensus 248 leeAGAf~IvlE---~--Vp~el---a~~It~~l~IP 276 (384)
+.++|++.|.+- + .|.++ .+.+.+.+++|
T Consensus 148 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 184 (259)
T cd07939 148 AQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP 184 (259)
T ss_pred HHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 889999999976 2 25444 44444555544
No 432
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=86.07 E-value=9.9 Score=37.36 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc--cchHHHHHHHHHc-C-CceeeeccCCcccccccCCccccCCCHHHHHHHH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS--PSRITAARGIVEA-G-IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~--~e~~~~I~alv~a-G-IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll 242 (384)
.++++.++.+.++. +.|-.+|||--|. ++..+.|++++++ | ++++- ..- +|-+. .+++
T Consensus 133 ~~~~~~~~~~~~~~-~~Gf~~iKik~g~~~~~d~~~v~~lr~~~g~~~l~v---------D~n-----~~~~~---~~A~ 194 (316)
T cd03319 133 DTPEAMAAAAKKAA-KRGFPLLKIKLGGDLEDDIERIRAIREAAPDARLRV---------DAN-----QGWTP---EEAV 194 (316)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEEeCCChhhHHHHHHHHHHhCCCCeEEE---------eCC-----CCcCH---HHHH
Confidence 37888888888877 5799999985331 3456778888864 3 44431 111 23343 4567
Q ss_pred HHHHHHHHcCCcEEEecCCC--HHHHHHHHhhcCCCEEE
Q 016682 243 ETALALQEVGCFSVVLECVP--PPVAAAATSALQIPTIG 279 (384)
Q Consensus 243 ~rAkAleeAGAf~IvlE~Vp--~ela~~It~~l~IPtIG 279 (384)
+-++++++.|.+.|.=++.+ -+..+++++++++|+++
T Consensus 195 ~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~ipIa~ 233 (316)
T cd03319 195 ELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLPIMA 233 (316)
T ss_pred HHHHHHHhcCCCEEECCCCCCCHHHHHHHHhcCCCCEEE
Confidence 77888888888666422333 46778999999999763
No 433
>PRK08508 biotin synthase; Provisional
Probab=86.07 E-value=12 Score=36.74 Aligned_cols=116 Identities=21% Similarity=0.188 Sum_probs=68.0
Q ss_pred HHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 016682 108 LDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (384)
Q Consensus 108 ae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAd 186 (384)
+.+.|+.-+ +|++.. |+++ -.++-+++.++.|++-.+.--+.+- .++ .+.++. +.++++|++
T Consensus 52 a~~~g~~~~~lv~sg~-----~~~~---~~~e~~~ei~~~ik~~~p~l~i~~s---~G~-~~~e~l-----~~Lk~aGld 114 (279)
T PRK08508 52 AKANGALGFCLVTSGR-----GLDD---KKLEYVAEAAKAVKKEVPGLHLIAC---NGT-ASVEQL-----KELKKAGIF 114 (279)
T ss_pred HHHCCCCEEEEEeccC-----CCCc---ccHHHHHHHHHHHHhhCCCcEEEec---CCC-CCHHHH-----HHHHHcCCC
Confidence 344577666 443333 2333 3778888888888754432213232 244 355555 456689999
Q ss_pred EEEe--CCC------------ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcC
Q 016682 187 AIKL--EGG------------SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (384)
Q Consensus 187 aVKL--Egg------------~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG 252 (384)
.+++ |.. .++..+.++.+.++||+|+.+ .+-| .|-|. +++++.+..+.+.|
T Consensus 115 ~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg---------~I~G---lGEt~---ed~~~~l~~lr~L~ 179 (279)
T PRK08508 115 SYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSG---------GIFG---LGESW---EDRISFLKSLASLS 179 (279)
T ss_pred EEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecce---------eEEe---cCCCH---HHHHHHHHHHHcCC
Confidence 9985 332 134556777788999999854 2212 25565 45555666666777
Q ss_pred CcE
Q 016682 253 CFS 255 (384)
Q Consensus 253 Af~ 255 (384)
.+.
T Consensus 180 ~~s 182 (279)
T PRK08508 180 PHS 182 (279)
T ss_pred CCE
Confidence 774
No 434
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.95 E-value=5.9 Score=37.76 Aligned_cols=88 Identities=24% Similarity=0.347 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccC-CCHHHHHHHHHHH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG-KNVTSAVKVVETA 245 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG-rt~~~a~~ll~rA 245 (384)
.+++++++-+..++ ++|.+.|-+-=..++-.+.|+.|++.. | . ..+| -| .+.. +++
T Consensus 24 ~~~~~a~~i~~al~-~~Gi~~iEitl~~~~~~~~I~~l~~~~-p---------~--~~IG----AGTVl~~------~~a 80 (212)
T PRK05718 24 NKLEDAVPLAKALV-AGGLPVLEVTLRTPAALEAIRLIAKEV-P---------E--ALIG----AGTVLNP------EQL 80 (212)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEecCCccHHHHHHHHHHHC-C---------C--CEEE----EeeccCH------HHH
Confidence 47889998888887 689998777532356677888887642 1 0 0111 11 1221 578
Q ss_pred HHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEE
Q 016682 246 LALQEVGCFSVVLECVPPPVAAAATSALQIPTI 278 (384)
Q Consensus 246 kAleeAGAf~IvlE~Vp~ela~~It~~l~IPtI 278 (384)
+...+|||+.++.+++.+++++. +.+.++|.+
T Consensus 81 ~~a~~aGA~FivsP~~~~~vi~~-a~~~~i~~i 112 (212)
T PRK05718 81 AQAIEAGAQFIVSPGLTPPLLKA-AQEGPIPLI 112 (212)
T ss_pred HHHHHcCCCEEECCCCCHHHHHH-HHHcCCCEe
Confidence 88899999999999998888777 567899988
No 435
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=85.91 E-value=13 Score=35.95 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=72.6
Q ss_pred HHHhhhCCCcEE--EEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 84 LRQKHKNGEPIT--MVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 84 lr~~k~~g~~I~--mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
|+++.++|++++ .++-.+...+.++..+|+|.|.+= .+++. .+.+++...+++... .... +++=+|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iD---------lEH~~-~~~~~~~~~~~a~~~-~g~~-~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLID---------GEHAP-NDVRTILSQLQALAP-YPSS-PVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEe---------ccCCC-CCHHHHHHHHHHHHh-cCCC-cEEECC
Confidence 777778888864 356778888888999999999863 23332 588888888877743 2223 556677
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHc-CCceeeeccCCc
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEA-GIAVMGHVGLTP 219 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~a-GIPV~gHiGLtP 219 (384)
..++ . ...+.+ ++|+++|.+-- -+.++.++.++++ .-|=.|+=|+.|
T Consensus 71 ~~~~----~----~i~~~L-d~Ga~gIivP~--v~s~e~a~~~v~~~~y~P~G~Rg~~~ 118 (249)
T TIGR02311 71 IGDP----V----LIKQLL-DIGAQTLLVPM--IETAEQAEAAVAATRYPPMGIRGVGS 118 (249)
T ss_pred CCCH----H----HHHHHh-CCCCCEEEecC--cCCHHHHHHHHHHcCCCCCCcCCCCC
Confidence 5333 2 235778 79999998853 2345556666642 234444444443
No 436
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.87 E-value=10 Score=38.78 Aligned_cols=108 Identities=24% Similarity=0.238 Sum_probs=71.7
Q ss_pred CHHHHHHhhhCCCcEE-EEecCChHHHHHHHHcCCCEEEe-cchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 80 TLTHLRQKHKNGEPIT-MVTAYDYPSAVHLDSAGIDICLV-GDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~-mlTAyD~~sA~iae~AGiD~IlV-GDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
|++.-+.+-++| ..+ .+++-|...|+-++++|+-++.- |.-.| +...++-.+++ +.+++..+.| |+
T Consensus 186 ~v~aa~~L~~~G-f~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIG-------sg~gv~~p~~i---~~~~e~~~vp-Vi 253 (326)
T PRK11840 186 TLKATEILVKEG-FQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIG-------SGLGIQNPYTI---RLIVEGATVP-VL 253 (326)
T ss_pred HHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHhcCCEEEeecccccc-------CCCCCCCHHHH---HHHHHcCCCc-EE
Confidence 455555555555 555 67889999999999999976655 54443 33344433333 4444445555 88
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------cchHHHHHHHHHcC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEAG 208 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~------~e~~~~I~alv~aG 208 (384)
+|= |- .+++++ .+.| |.|+|||-+--+. ..|+...+..+++|
T Consensus 254 vdA---GI-g~~sda----~~Am-elGadgVL~nSaIa~a~dPv~Ma~A~~~av~aG 301 (326)
T PRK11840 254 VDA---GV-GTASDA----AVAM-ELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAG 301 (326)
T ss_pred EeC---CC-CCHHHH----HHHH-HcCCCEEEEcceeccCCCHHHHHHHHHHHHHHH
Confidence 884 44 467777 4577 7999999886442 56788888888776
No 437
>PRK13753 dihydropteroate synthase; Provisional
Probab=85.82 E-value=8.5 Score=38.43 Aligned_cols=90 Identities=11% Similarity=0.113 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------cchH---HHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PSRI---TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~-----------~e~~---~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
.+++.+++.|.+++ +.|||.|=|-|.+ +|.. +.|++|.+.++|+- +.-|
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~IS------------IDT~---- 84 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVS------------IDSF---- 84 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEE------------EECC----
Confidence 58899999999999 5899999996643 2444 88899988776542 2222
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEE-ecCC-CHHHHHHHHhhcCCCEEEEcC
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVV-LECV-PPPVAAAATSALQIPTIGIGA 282 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~Iv-lE~V-p~ela~~It~~l~IPtIGIGA 282 (384)
.. ++ +++-.++||++|- +.+. .+++++ +....++|++-+-.
T Consensus 85 -~~----~v---a~~al~aGadiINDVsg~~d~~~~~-vva~~~~~vVlmH~ 127 (279)
T PRK13753 85 -QP----ET---QRYALKRGVGYLNDIQGFPDPALYP-DIAEADCRLVVMHS 127 (279)
T ss_pred -CH----HH---HHHHHHcCCCEEEeCCCCCchHHHH-HHHHcCCCEEEEec
Confidence 12 22 2233378999776 3444 456655 44456889887754
No 438
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.80 E-value=22 Score=30.67 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=42.8
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
|+.+.++|+|.|.++.+.... .++....++.+++..+.-.++..+.- +. ..+.+ ++ .+.|
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~--~~-~~~~~-----~~-~~~g 136 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSP--TG-ELAAA-----AA-EEAG 136 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECC--CC-ccchh-----hH-HHcC
Confidence 578999999999887665432 34455666777666533335555542 21 11122 13 4689
Q ss_pred CCEEEeCCC
Q 016682 185 MDAIKLEGG 193 (384)
Q Consensus 185 AdaVKLEgg 193 (384)
++.|.+.+.
T Consensus 137 ~d~i~~~~~ 145 (200)
T cd04722 137 VDEVGLGNG 145 (200)
T ss_pred CCEEEEcCC
Confidence 999999864
No 439
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.77 E-value=20 Score=34.32 Aligned_cols=150 Identities=10% Similarity=0.124 Sum_probs=91.7
Q ss_pred HHHHHHHH-cCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHH
Q 016682 103 PSAVHLDS-AGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 103 ~sA~iae~-AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~k 181 (384)
..|+...+ .|+|-|.+=|-=++- -|.+. . +...+.|++.+..| |.++ |+. .|.+++ .+++
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~----n----~~~I~~i~~~~~~p-i~vG---GGI-rs~e~v----~~~l- 95 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAK-AQHAR----E----FDYIKSLRRLTTKD-IEVG---GGI-RTKSQI----MDYF- 95 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcccc-cCCcc----h----HHHHHHHHhhcCCe-EEEc---CCc-CCHHHH----HHHH-
Confidence 67887888 799999876643321 23322 1 34446676766555 5555 677 477776 5677
Q ss_pred HhCCCEEEeCCCc-cchHHHHHHHHHc-CCceeeeccCCcccccccCC-ccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 182 EGGMDAIKLEGGS-PSRITAARGIVEA-GIAVMGHVGLTPQAISVLGG-FRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 182 eaGAdaVKLEgg~-~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgG-frvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
++||+-|-| |.. .+-.+.++.+.+. |=.++- . ....+| ....|-+......+++-++.+++.|+..+++
T Consensus 96 ~~Ga~kvvi-gt~a~~~~~~l~~~~~~fg~~ivv--s-----lD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 96 AAGINYCIV-GTKGIQDTDWLKEMAHTFPGRIYL--S-----VDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred HCCCCEEEE-CchHhcCHHHHHHHHHHcCCCEEE--E-----EEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 699999987 431 1234566666653 111111 0 111122 1233333333345678888999999988776
Q ss_pred cCC---------CHHHHHHHHhhcCCCEEE
Q 016682 259 ECV---------PPPVAAAATSALQIPTIG 279 (384)
Q Consensus 259 E~V---------p~ela~~It~~l~IPtIG 279 (384)
-.+ .-++.+.+.+.+++|+|.
T Consensus 168 tdi~~dGt~~G~~~~li~~l~~~~~ipvi~ 197 (234)
T PRK13587 168 TDIAKDGKMSGPNFELTGQLVKATTIPVIA 197 (234)
T ss_pred ecccCcCCCCccCHHHHHHHHHhCCCCEEE
Confidence 655 378889999999999883
No 440
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=85.77 E-value=35 Score=35.10 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=85.5
Q ss_pred HHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC
Q 016682 83 HLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF 162 (384)
Q Consensus 83 ~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf 162 (384)
.|++.+++-...++.++||..++..+.+. +|++-+|... ++--+++.++. .++.| |+.=.+.
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~------------~~n~~LL~~~a----~~gkP-Vilk~G~ 234 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARN------------MQNFELLKAAG----RVNKP-VLLKRGL 234 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECccc------------ccCHHHHHHHH----ccCCc-EEEeCCC
Confidence 34444444456678899999999999999 9999998544 22234554433 35567 4444442
Q ss_pred CCCcCCHHHHHHHHHHHHHHhCC-CEEEeC-CCc------c--chHHHHHHHHH-cCCceeeeccCCcccccccCCcccc
Q 016682 163 GTYESSTNQAVDTAVRILKEGGM-DAIKLE-GGS------P--SRITAARGIVE-AGIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 163 gsY~~s~e~av~nA~rl~keaGA-daVKLE-gg~------~--e~~~~I~alv~-aGIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
+ .++++....+-.+ .+.|. +.+-+| |-+ . --...|..|.+ .+.||+ +.|.+ . .
T Consensus 235 --~-~t~~e~~~Ave~i-~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~----~d~~H--s------~ 298 (360)
T PRK12595 235 --S-ATIEEFIYAAEYI-MSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVM----VDVTH--S------T 298 (360)
T ss_pred --C-CCHHHHHHHHHHH-HHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEE----EeCCC--C------C
Confidence 2 3566665544444 46777 678888 421 1 12344555554 688875 33422 2 2
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEecCCC
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVVLECVP 262 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~IvlE~Vp 262 (384)
|+. +-+..-+++-..+||+++++|.=+
T Consensus 299 G~r----~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 299 GRR----DLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred cch----hhHHHHHHHHHHcCCCeEEEEecC
Confidence 322 123345677779999999999544
No 441
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=85.67 E-value=8.1 Score=38.75 Aligned_cols=94 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred HhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhh------------------hhccCCCC--------cCCCHHH
Q 016682 86 QKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM------------------VVHGHDTT--------LPITLEE 139 (384)
Q Consensus 86 ~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~m------------------v~lG~~dT--------~~Vtlde 139 (384)
..|.+-..+.|-.|=+...|..+.++|+|+|-+.=+.+. ...||.+. ..+.++.
T Consensus 106 ~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el 185 (283)
T cd04727 106 IDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL 185 (283)
T ss_pred HHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence 333333688999999999999999999999953311111 22455332 2345444
Q ss_pred HHHHHHHHHcccCCCcE-EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC
Q 016682 140 MLVHCRAVARGAKRPLL-VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG 192 (384)
Q Consensus 140 Ml~h~raV~Rga~~~~v-vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg 192 (384)
+ +.+++..+.|+| ++. |+. .+++++ .+++ +.||++|-+=.
T Consensus 186 L----k~l~~~~~iPVV~iAe---GGI-~Tpena----~~v~-e~GAdgVaVGS 226 (283)
T cd04727 186 V----KETAKLGRLPVVNFAA---GGV-ATPADA----ALMM-QLGADGVFVGS 226 (283)
T ss_pred H----HHHHHhcCCCeEEEEe---CCC-CCHHHH----HHHH-HcCCCEEEEcH
Confidence 3 444455567754 365 566 477777 4566 58999987743
No 442
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=85.65 E-value=6.3 Score=39.50 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=51.2
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
..++.+|..| ..++.++-+.-.|+.+.++|+|+|. .|.-.| ||.. ..+. .+..-...|++..+.|+|.+
T Consensus 127 ~~i~~l~~~g-i~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAG----GH~g-~~~~--~~~~L~~~v~~~~~iPViaA-- 196 (330)
T PF03060_consen 127 EVIERLHAAG-IKVIPQVTSVREARKAAKAGADAIVAQGPEAG----GHRG-FEVG--STFSLLPQVRDAVDIPVIAA-- 196 (330)
T ss_dssp HHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEEE-TTSS----EE----SSG---HHHHHHHHHHH-SS-EEEE--
T ss_pred HHHHHHHHcC-CccccccCCHHHHHHhhhcCCCEEEEeccccC----CCCC-cccc--ceeeHHHHHhhhcCCcEEEe--
Confidence 3456666665 6788899999999999999999996 442211 2222 1111 23334455666666775554
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|+. .+.+.. ...+ ..||++|.+
T Consensus 197 --GGI-~dg~~i----aaal-~lGA~gV~~ 218 (330)
T PF03060_consen 197 --GGI-ADGRGI----AAAL-ALGADGVQM 218 (330)
T ss_dssp --SS---SHHHH----HHHH-HCT-SEEEE
T ss_pred --cCc-CCHHHH----HHHH-HcCCCEeec
Confidence 666 455554 2345 589999998
No 443
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.60 E-value=11 Score=44.45 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=87.2
Q ss_pred HHHHHcccCCCcE---EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCCceeeeccC
Q 016682 144 CRAVARGAKRPLL---VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGIAVMGHVGL 217 (384)
Q Consensus 144 ~raV~Rga~~~~v---vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGIPV~gHiGL 217 (384)
.+.+++..|+.++ .=-.-.-+|..-|++.++.-++...+.|.|.+.+=|.. +.+...|+++.++|.-+.|-|=+
T Consensus 595 l~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~y 674 (1143)
T TIGR01235 595 LEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICY 674 (1143)
T ss_pred HHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 3566666654422 22222246777789999988888778999999998873 56778889999999877765433
Q ss_pred CcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec---CC--C---HHHHHHHHhhcCCCE
Q 016682 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE---CV--P---PPVAAAATSALQIPT 277 (384)
Q Consensus 218 tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE---~V--p---~ela~~It~~l~IPt 277 (384)
| |+..--.++....+-.++-|+.++++||+.|.+- ++ | .++.+.|.+++++|+
T Consensus 675 t-------~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi 735 (1143)
T TIGR01235 675 T-------GDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPI 735 (1143)
T ss_pred e-------ccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeE
Confidence 3 2222223443445678889999999999999986 22 4 356666667777874
No 444
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=85.57 E-value=21 Score=42.31 Aligned_cols=119 Identities=21% Similarity=0.270 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcccCCCcEE---EeCCC--CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----cchHHHHHHHHHc
Q 016682 137 LEEMLVHCRAVARGAKRPLLV---GDLPF--GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEA 207 (384)
Q Consensus 137 ldeMl~h~raV~Rga~~~~vv---aDmPf--gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----~e~~~~I~alv~a 207 (384)
-++|..+.+.+.+.++.|+.+ +.+|. +.|..+|++..+.+.++++++|+.. =||. +++...|+..++.
T Consensus 238 P~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~I---IGGCCGTtPeHI~ala~~l~~ 314 (1178)
T TIGR02082 238 PDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNI---VGGCCGTTPDHIRAIAEAVKN 314 (1178)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcE---EEecCCCCHHHHHHHHHHhhc
Confidence 578999999998888877665 44442 5788899998888888886555554 4652 5555555554432
Q ss_pred CCcee--ee------ccCCcccccccCCccccC-CCH-------H------HHHHHHHHHHHHHHcCCcEEEe
Q 016682 208 GIAVM--GH------VGLTPQAISVLGGFRPQG-KNV-------T------SAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 208 GIPV~--gH------iGLtPQ~~~~lgGfrvqG-rt~-------~------~a~~ll~rAkAleeAGAf~Ivl 258 (384)
--|.. .+ -|+.+-.......|.++| |+. . ..++++++|+...++||+.|=+
T Consensus 315 ~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDV 387 (1178)
T TIGR02082 315 IKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDI 387 (1178)
T ss_pred CCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 21211 00 111111111112466777 321 1 1268999999999999998865
No 445
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=85.53 E-value=8.6 Score=37.72 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeC
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDL 160 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDm 160 (384)
+..+|+... .++.+.+.+.+...+..+.++|+|.|++| +++.+++-...+.+... ++..+.+.
T Consensus 171 v~~~r~~~~-~~~~I~vev~t~eea~~A~~~gaD~I~ld--------------~~~~e~l~~~v~~i~~~-~~i~i~as- 233 (269)
T cd01568 171 VKRARAAAP-FEKKIEVEVETLEEAEEALEAGADIIMLD--------------NMSPEELKEAVKLLKGL-PRVLLEAS- 233 (269)
T ss_pred HHHHHHhCC-CCCeEEEecCCHHHHHHHHHcCCCEEEEC--------------CCCHHHHHHHHHHhccC-CCeEEEEE-
Confidence 444554432 25679999999999999999999999997 46667765555544332 33345565
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 161 PFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 161 PfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|+- |++.+ ..+. ++|||+|-+
T Consensus 234 --GGI--t~~ni----~~~a-~~Gad~Isv 254 (269)
T cd01568 234 --GGI--TLENI----RAYA-ETGVDVIST 254 (269)
T ss_pred --CCC--CHHHH----HHHH-HcCCCEEEE
Confidence 554 55544 5666 699999977
No 446
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=85.52 E-value=18 Score=35.97 Aligned_cols=107 Identities=17% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC-c-EEEeCCC----
Q 016682 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP-L-LVGDLPF---- 162 (384)
Q Consensus 91 g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~-~-vvaDmPf---- 162 (384)
+-|+.+= -++|+-..+-+=++||+-|.+ |....+++|-+..|+.|++-+... . |=+-+..
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMi------------D~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMI------------DGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEe------------CCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 4565554 567777777777888888876 344578999999999887655321 1 1122111
Q ss_pred --------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------cchHHHHHHHHHc-CCceeee
Q 016682 163 --------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 --------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------~e~~~~I~alv~a-GIPV~gH 214 (384)
..| .+|+++ .++++++|+|++=+-=|. .-..++++.|.++ +||.+-|
T Consensus 137 e~~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlH 202 (276)
T cd00947 137 EDGVVGDEGLL-TDPEEA----EEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLH 202 (276)
T ss_pred cCCcccccccC-CCHHHH----HHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEe
Confidence 125 578888 579999999988765331 2345667777754 8999988
No 447
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=85.48 E-value=19 Score=35.61 Aligned_cols=124 Identities=18% Similarity=0.099 Sum_probs=73.4
Q ss_pred HHHHHHHcCCCEEEec----chhhhhhccCCCCcCCCHHHHHHHHHHHHc-----ccCCCcEEEeCCCC-CCcCCHHHHH
Q 016682 104 SAVHLDSAGIDICLVG----DSAAMVVHGHDTTLPITLEEMLVHCRAVAR-----GAKRPLLVGDLPFG-TYESSTNQAV 173 (384)
Q Consensus 104 sA~iae~AGiD~IlVG----DSl~mv~lG~~dT~~VtldeMl~h~raV~R-----ga~~~~vvaDmPfg-sY~~s~e~av 173 (384)
....+-++|++.|-+. |.-.-..++ -|.+|.+...+.+.+ |....+-+.| |+ .|..+++..+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~------~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~~~~r~~~~~~~ 150 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLR------KTPEEHFADIREVIEYAIKNGIEVNIYLED--WSNGMRDSPDYVF 150 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHC------cCHHHHHHHHHHHHHHHHhCCCEEEEEEEe--CCCCCcCCHHHHH
Confidence 3555667899988433 222222222 356666554443333 3222233355 43 4567888888
Q ss_pred HHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc--CCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 174 DTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA--GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 174 ~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
+.+.++. +.|++.|.|-|-. .++.+.++.+.+. ++|+--| ..|.+| -.+.-+.
T Consensus 151 ~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H------~Hnd~G-------------la~AN~l 210 (280)
T cd07945 151 QLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFH------AHNDYD-------------LAVANVL 210 (280)
T ss_pred HHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEE------eCCCCC-------------HHHHHHH
Confidence 8887776 7999999999852 4566777777764 4666555 222222 2344556
Q ss_pred HHHHcCCcE
Q 016682 247 ALQEVGCFS 255 (384)
Q Consensus 247 AleeAGAf~ 255 (384)
+--++||+.
T Consensus 211 aA~~aGa~~ 219 (280)
T cd07945 211 AAVKAGIKG 219 (280)
T ss_pred HHHHhCCCE
Confidence 667899984
No 448
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=85.48 E-value=2.4 Score=41.00 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=39.8
Q ss_pred CCHHHH-HHHHHHHHHHH-HcCCcEEEecCCCHH--HHHHHHhhcCCCEEEE
Q 016682 233 KNVTSA-VKVVETALALQ-EVGCFSVVLECVPPP--VAAAATSALQIPTIGI 280 (384)
Q Consensus 233 rt~~~a-~~ll~rAkAle-eAGAf~IvlE~Vp~e--la~~It~~l~IPtIGI 280 (384)
|+.++. ..+++.++.|+ +.||++|++-|-.+. ....+.+++++|+|+|
T Consensus 40 ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~i 91 (251)
T TIGR00067 40 KSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFPVVGV 91 (251)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEee
Confidence 677666 44667789998 999999999999754 4788999999999994
No 449
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=85.47 E-value=7.1 Score=40.33 Aligned_cols=158 Identities=22% Similarity=0.388 Sum_probs=0.0
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcc-----cCCC
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARG-----AKRP 154 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rg-----a~~~ 154 (384)
|+.+++++.+.|--|+-+++-|.-.|..+ +.|++. .+.|
T Consensus 33 tv~QI~~L~~aGceivRvavp~~~~a~al------------------------------------~~I~~~l~~~g~~iP 76 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVPDMEAAEAL------------------------------------KEIKKRLRALGSPIP 76 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-SHHHHHHH------------------------------------HHHHHHHHCTT-SS-
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHH------------------------------------HHHHHhhccCCCCCC
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC------------CC-ccchHHHHHHHHHcCCceeeeccCCccc
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE------------GG-SPSRITAARGIVEAGIAVMGHVGLTPQA 221 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE------------gg-~~e~~~~I~alv~aGIPV~gHiGLtPQ~ 221 (384)
+|||+=| .| +-|...+ +. +|.|.|- |. .+...+.|++..+.|||+ -||.+--+
T Consensus 77 -lVADIHF-d~--------~lAl~a~-~~-v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipI--RIGvN~GS 142 (359)
T PF04551_consen 77 -LVADIHF-DY--------RLALEAI-EA-VDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPI--RIGVNSGS 142 (359)
T ss_dssp -EEEEEST-TC--------HHHHHHH-HC--SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EE--EEEEEGGG
T ss_pred -eeeecCC-CH--------HHHHHHH-HH-hCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCE--EEeccccc
Q ss_pred cc--ccCCccccCCCHHHH-HHHHHHHHHHHHcCCcEEEecCCC------HHHHHHHHhhcCCCEE-EE-cCCCCCCchh
Q 016682 222 IS--VLGGFRPQGKNVTSA-VKVVETALALQEVGCFSVVLECVP------PPVAAAATSALQIPTI-GI-GAGPFCSGQV 290 (384)
Q Consensus 222 ~~--~lgGfrvqGrt~~~a-~~ll~rAkAleeAGAf~IvlE~Vp------~ela~~It~~l~IPtI-GI-GAG~~cDGQv 290 (384)
.. .+.-| |-|.+.. +.+++.++-+++-|-+=|++-+=. -+.-+.++++++.|+- |+ =||+.-||.|
T Consensus 143 L~~~~~~ky---~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~~dyPLHLGvTEAG~~~~g~I 219 (359)
T PF04551_consen 143 LEKDILEKY---GPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAERMDYPLHLGVTEAGTGEDGTI 219 (359)
T ss_dssp S-HHHHHHH---CHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH--S-EEEEBSSEESCHHHHH
T ss_pred CcHHHHhhc---cchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHhcCCCeEEeecCCCCcccchh
No 450
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=85.30 E-value=23 Score=35.95 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC--CCc-----------------cchHHHHHHHHH-----cCCceeeeccCCcccccccC
Q 016682 171 QAVDTAVRILKEGGMDAIKLE--GGS-----------------PSRITAARGIVE-----AGIAVMGHVGLTPQAISVLG 226 (384)
Q Consensus 171 ~av~nA~rl~keaGAdaVKLE--gg~-----------------~e~~~~I~alv~-----aGIPV~gHiGLtPQ~~~~lg 226 (384)
+.+++.-|-+-|+|||.|.-- |+. .+-+..-|+..+ ...=|.|-+|=|..+....+
T Consensus 53 d~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~ 132 (311)
T COG0646 53 DVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSISP 132 (311)
T ss_pred HHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCcCCcCC
Confidence 577777777778999987543 211 111222233333 24558888887776554444
Q ss_pred CccccCCCHHHH-HHHHHHHHHHHHcCCcEEEecCCC
Q 016682 227 GFRPQGKNVTSA-VKVVETALALQEVGCFSVVLECVP 262 (384)
Q Consensus 227 GfrvqGrt~~~a-~~ll~rAkAleeAGAf~IvlE~Vp 262 (384)
.| .-|-++. +...+..+.|-+-|+|.+++|.+-
T Consensus 133 ~~---~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~ 166 (311)
T COG0646 133 DF---AVTFDELVEAYREQVEGLIDGGADLILIETIF 166 (311)
T ss_pred cc---cccHHHHHHHHHHHHHHHHhCCCcEEEEehhc
Confidence 22 2344444 456678999999999999999883
No 451
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.19 E-value=31 Score=37.15 Aligned_cols=142 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--EeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--aDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
|+.++++|||.|=+|... ++-+|.-..-+-...+...+-++ +.+--.++....+..++ .+. +
T Consensus 33 a~~L~~~Gvd~IEvG~p~------------as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e---~~~-~ 96 (524)
T PRK12344 33 ARKLDELGVDYIEGGWPG------------SNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQ---ALL-D 96 (524)
T ss_pred HHHHHHcCCCEEEEcCCc------------CChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHH---HHH-h
Q ss_pred hCCCEEEeCCCc-----------------cchHHHHHHHHHcCCceee---eccCCcccccccCCccccCCCHHHHHHHH
Q 016682 183 GGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMG---HVGLTPQAISVLGGFRPQGKNVTSAVKVV 242 (384)
Q Consensus 183 aGAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~g---HiGLtPQ~~~~lgGfrvqGrt~~~a~~ll 242 (384)
+|++.|.+--.. +...+.|+.+.+.|..|+. | ...+|+ .+-+-++
T Consensus 97 ~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~---------~~Da~r------~d~~~l~ 161 (524)
T PRK12344 97 AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEH---------FFDGYK------ANPEYAL 161 (524)
T ss_pred CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccc---------cccccc------CCHHHHH
Q ss_pred HHHHHHHHcCCcEEEec-----CCC---HHHHHHHHhhcCCCE
Q 016682 243 ETALALQEVGCFSVVLE-----CVP---PPVAAAATSALQIPT 277 (384)
Q Consensus 243 ~rAkAleeAGAf~IvlE-----~Vp---~ela~~It~~l~IPt 277 (384)
+-++++.++||+.|.+. +.| .++++.+.+.+++|+
T Consensus 162 ~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~v~i 204 (524)
T PRK12344 162 ATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPGVPL 204 (524)
T ss_pred HHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcCCeE
No 452
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.97 E-value=13 Score=35.35 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcC-----CceeeeccCCcccccccCCccccCCCHHHHHHH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAG-----IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aG-----IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~l 241 (384)
.+.++++.-+..++ ++|...+-+-=.++.-.+.|++|.+.- +-|=...=+|++
T Consensus 22 ~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~--------------------- 79 (213)
T PRK06552 22 ESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV--------------------- 79 (213)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH---------------------
Q ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHh----hhhcCCCCCCCCCCCcchhhhhh
Q 016682 242 VETALALQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYH----DLLGMMQHPHHAKVTPKFCKQFA 317 (384)
Q Consensus 242 l~rAkAleeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~----DlLG~~~~P~~~~~~PkFvk~y~ 317 (384)
+++...+|||.-||-++..+++++. +.+.++|.+ -|..|..+++-.. |+++++ |.. ..-|.++|...
T Consensus 80 --~~~~a~~aGA~FivsP~~~~~v~~~-~~~~~i~~i---PG~~T~~E~~~A~~~Gad~vklF--Pa~-~~G~~~ik~l~ 150 (213)
T PRK06552 80 --TARLAILAGAQFIVSPSFNRETAKI-CNLYQIPYL---PGCMTVTEIVTALEAGSEIVKLF--PGS-TLGPSFIKAIK 150 (213)
T ss_pred --HHHHHHHcCCCEEECCCCCHHHHHH-HHHcCCCEE---CCcCCHHHHHHHHHcCCCEEEEC--Ccc-cCCHHHHHHHh
Q ss_pred h
Q 016682 318 R 318 (384)
Q Consensus 318 ~ 318 (384)
.
T Consensus 151 ~ 151 (213)
T PRK06552 151 G 151 (213)
T ss_pred h
No 453
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=84.84 E-value=11 Score=36.83 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc-----------cc---hHHHHHHHHHc-CCceeeeccCCcccccccCCcccc
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS-----------PS---RITAARGIVEA-GIAVMGHVGLTPQAISVLGGFRPQ 231 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~-----------~e---~~~~I~alv~a-GIPV~gHiGLtPQ~~~~lgGfrvq 231 (384)
.+++++++.|.+++ +.||+.|.|-|.+ +| +.+.|+.+.+. ++||+.| |+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD---T~------------ 83 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD---TY------------ 83 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe---CC------------
Confidence 58899999999988 5899999993211 12 66777777776 9999876 11
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEE-ecCC-CHHHHHHHHhhcCCCEEEEc
Q 016682 232 GKNVTSAVKVVETALALQEVGCFSVV-LECV-PPPVAAAATSALQIPTIGIG 281 (384)
Q Consensus 232 Grt~~~a~~ll~rAkAleeAGAf~Iv-lE~V-p~ela~~It~~l~IPtIGIG 281 (384)
.. +.++.|.. +|+++|- +-+. .++.+.. .++-+.|++.+-
T Consensus 84 --~~----~vi~~al~---~G~~iINsis~~~~~~~~~l-~~~~~~~vV~m~ 125 (257)
T TIGR01496 84 --RA----EVARAALE---AGADIINDVSGGQDPAMLEV-AAEYGVPLVLMH 125 (257)
T ss_pred --CH----HHHHHHHH---cCCCEEEECCCCCCchhHHH-HHHcCCcEEEEe
Confidence 11 33444433 3999765 2222 3455544 455688888764
No 454
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=84.82 E-value=15 Score=36.73 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=71.8
Q ss_pred CCCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--E---eCC-
Q 016682 90 NGEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--G---DLP- 161 (384)
Q Consensus 90 ~g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--a---DmP- 161 (384)
.+-|+++= -+.|+-..+-+=++||+-|.+ |....+++|-+..+|.|++-+..-=+. + -++
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~------------DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg 140 (286)
T PRK12738 73 YNMPLALHLDHHESLDDIRRKVHAGVRSAMI------------DGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGG 140 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEee------------cCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCC
Confidence 34565554 567777777777888887765 455678999999999987765421111 1 111
Q ss_pred ------CC----CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 162 ------FG----TYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 162 ------fg----sY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
.. -| .+|+++ .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 141 ~ed~~~~~~~~~~~-T~peea----~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLH 208 (286)
T PRK12738 141 VEDDMSVDAESAFL-TDPQEA----KRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLH 208 (286)
T ss_pred ccCCcccccchhcC-CCHHHH----HHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEe
Confidence 00 16 588888 579999999998776442 2234566666543 8999988
No 455
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=84.79 E-value=15 Score=35.46 Aligned_cols=71 Identities=28% Similarity=0.354 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCEE--EeCCC------------ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 167 SSTNQAVDTAVRILKEGGMDAI--KLEGG------------SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaV--KLEgg------------~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
.+.+.. +.++++|++.| .+|+. .++..+.++.+.++||+|+.|+ +=|. |
T Consensus 121 ~~~e~l-----~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~---------i~Gl---~ 183 (296)
T TIGR00433 121 LDPEQA-----KRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG---------IFGL---G 183 (296)
T ss_pred CCHHHH-----HHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE---------EEeC---C
Confidence 455554 56778999986 45622 0344566788889999998771 1121 3
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
-|.+ ++++.+..+.+.|.+.+.
T Consensus 184 et~~---d~~~~~~~l~~l~~~~i~ 205 (296)
T TIGR00433 184 ETVE---DRIGLALALANLPPESVP 205 (296)
T ss_pred CCHH---HHHHHHHHHHhCCCCEEE
Confidence 3443 444555556667887663
No 456
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=84.62 E-value=10 Score=35.79 Aligned_cols=127 Identities=23% Similarity=0.286 Sum_probs=75.6
Q ss_pred hHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHH---cccCCCcEEEeCCCCCCcCC-----HHHHH
Q 016682 102 YPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVA---RGAKRPLLVGDLPFGTYESS-----TNQAV 173 (384)
Q Consensus 102 ~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~---Rga~~~~vvaDmPfgsY~~s-----~e~av 173 (384)
..+++.+-+.|+|.|-+-=.++.. +-. ..++++...++|+ +....|+|+= ++ .+... ..+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~--~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE--~~-l~~~~~~~~~~~~~I 148 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGAL--GSG-----NEDEVIEEIAAVVEECHKYGLKVILE--PY-LRGEEVADEKKPDLI 148 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHH--HTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE--EC-ECHHHBSSTTHHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccc--ccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE--Ee-cCchhhcccccHHHH
Confidence 677888888899998432111111 111 1445555555554 4446665554 33 12111 12368
Q ss_pred HHHHHHHHHhCCCEEEeCCC-----ccchHHHHHHHHH-cCCc----eeeeccCCcccccccCCccccCCCHHHHHHHHH
Q 016682 174 DTAVRILKEGGMDAIKLEGG-----SPSRITAARGIVE-AGIA----VMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVE 243 (384)
Q Consensus 174 ~nA~rl~keaGAdaVKLEgg-----~~e~~~~I~alv~-aGIP----V~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~ 243 (384)
.++.|+..+.|||.||.+=+ ..+....++.+++ ..+| |. ..||- +.+...+.++
T Consensus 149 ~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk-----------~sGGi-----~~~~~~~~l~ 212 (236)
T PF01791_consen 149 ARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVK-----------ASGGI-----DAEDFLRTLE 212 (236)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEE-----------EESSS-----SHHHHHHSHH
T ss_pred HHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEE-----------EeCCC-----ChHHHHHHHH
Confidence 88889988999999999754 1244566666665 4555 43 23443 6677788899
Q ss_pred HHHHHHHcCCc
Q 016682 244 TALALQEVGCF 254 (384)
Q Consensus 244 rAkAleeAGAf 254 (384)
.|..+-++||+
T Consensus 213 ~a~~~i~aGa~ 223 (236)
T PF01791_consen 213 DALEFIEAGAD 223 (236)
T ss_dssp HHHHHHHTTHS
T ss_pred HHHHHHHcCCh
Confidence 99999999993
No 457
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=84.53 E-value=3.8 Score=40.42 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecCC---C-------------HHHHHHHHhhcCCCE
Q 016682 236 TSAVKVVETALALQEVGCFSVVLECV---P-------------PPVAAAATSALQIPT 277 (384)
Q Consensus 236 ~~a~~ll~rAkAleeAGAf~IvlE~V---p-------------~ela~~It~~l~IPt 277 (384)
+--++.+++|.+||++|+|+|.+|.- | .-++++|.+.++||+
T Consensus 31 ~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPv 88 (263)
T COG0434 31 AVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPV 88 (263)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccc
Confidence 34488999999999999999999953 2 234577888889994
No 458
>PRK00865 glutamate racemase; Provisional
Probab=84.46 E-value=33 Score=33.25 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=40.7
Q ss_pred HHHHHHcccCCCcEE--E---eCCCCCCcCCHHHHHHHH---HHHHHHhCCCEEEeCCCccchHHHHHHHHH-cCCceee
Q 016682 143 HCRAVARGAKRPLLV--G---DLPFGTYESSTNQAVDTA---VRILKEGGMDAIKLEGGSPSRITAARGIVE-AGIAVMG 213 (384)
Q Consensus 143 h~raV~Rga~~~~vv--a---DmPfgsY~~s~e~av~nA---~rl~keaGAdaVKLEgg~~e~~~~I~alv~-aGIPV~g 213 (384)
-.+.+++-.|+-=++ + .+|||+- |.++..+-+ .+.+++.|+++|-|-.-+. +.-.+..|.+ ..|||+|
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG~k--s~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa-~~~~l~~lr~~~~iPvig 96 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYGEK--SEEEIRERTLEIVEFLLEYGVKMLVIACNTA-SAVALPDLRERYDIPVVG 96 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCCCC--CHHHHHHHHHHHHHHHHhCCCCEEEEeCchH-HHHHHHHHHHhCCCCEEe
Confidence 446666766654333 4 4677663 666554433 3445578999999977632 2223444443 3789887
No 459
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=84.45 E-value=37 Score=32.10 Aligned_cols=165 Identities=16% Similarity=0.188 Sum_probs=90.7
Q ss_pred HcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCC--CCCcCCHHHHHHHHHHHHHHhCC
Q 016682 110 SAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPF--GTYESSTNQAVDTAVRILKEGGM 185 (384)
Q Consensus 110 ~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPf--gsY~~s~e~av~nA~rl~keaGA 185 (384)
..|+|+| +-=|.+.. ..+ .-.+.+++...+.++ .+.|+|+ .=.+. |.|..+.++-++--.+++...|+
T Consensus 22 ~~~aD~vElRlD~l~~----~~~--~~~~~~~~~~~~~~~--~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~ 93 (228)
T TIGR01093 22 CKGADIVELRVDLLKD----PSS--NNDVDALIEQLSQLR--PDKPLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGP 93 (228)
T ss_pred ccCCCEEEEEechhcc----cCc--HHHHHHHHHHHHHhc--CCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 4689998 54444311 011 112345555555554 3456454 22111 44555655544433344345789
Q ss_pred CEEEeCCCc--cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC-
Q 016682 186 DAIKLEGGS--PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP- 262 (384)
Q Consensus 186 daVKLEgg~--~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp- 262 (384)
+.|=+|=.. ....+.++.+...|+.|+++ .| .| .+|... .++++..+.+++.|||.+=+=+.|
T Consensus 94 d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S-------~H---~f---~~tp~~-~~l~~~~~~~~~~gaDivKia~~a~ 159 (228)
T TIGR01093 94 DFVDIELFLPDDAVKELINIAKKGGTKIIMS-------YH---DF---QKTPSW-EEIVERLEKALSYGADIVKIAVMAN 159 (228)
T ss_pred CEEEEEccCCHHHHHHHHHHHHHCCCEEEEe-------cc---CC---CCCCCH-HHHHHHHHHHHHhCCCEEEEEeccC
Confidence 999999431 22333445566789999875 11 22 334322 345666777788999988665543
Q ss_pred --HHHHHHHH--h----hcCCCEEEEcCCCCCCchhh-hHhhhhc
Q 016682 263 --PPVAAAAT--S----ALQIPTIGIGAGPFCSGQVL-VYHDLLG 298 (384)
Q Consensus 263 --~ela~~It--~----~l~IPtIGIGAG~~cDGQvL-V~~DlLG 298 (384)
.++.+-+. . ...+|+|.|+=|+. |++- ++.-++|
T Consensus 160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~--G~~SRil~~~~g 202 (228)
T TIGR01093 160 SKEDVLTLLEITNKVDEHADVPLITMSMGDR--GKISRVLGAVFG 202 (228)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC--ChhHhhcccccc
Confidence 33332222 2 23589999998886 5543 5555555
No 460
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=84.10 E-value=25 Score=34.70 Aligned_cols=78 Identities=15% Similarity=0.006 Sum_probs=46.2
Q ss_pred HHHHHHc---CCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHH
Q 016682 105 AVHLDSA---GIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILK 181 (384)
Q Consensus 105 A~iae~A---GiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~k 181 (384)
++.+++. |+|+|=+-=|--++ -|..+ ..-+.+.+..-+++|++.++.| |.+=|+- + .+.++..+.|..+.
T Consensus 109 ~~~~~~~~~~~ad~ielN~sCPn~-~~~~~-~~~~~~~~~~i~~~v~~~~~iP-v~vKl~p--~-~~~~~~~~~a~~l~- 181 (294)
T cd04741 109 YKKIAAHQKQFPLAMELNLSCPNV-PGKPP-PAYDFDATLEYLTAVKAAYSIP-VGVKTPP--Y-TDPAQFDTLAEALN- 181 (294)
T ss_pred HHHHHhhccccccEEEEECCCCCC-CCccc-ccCCHHHHHHHHHHHHHhcCCC-EEEEeCC--C-CCHHHHHHHHHHHh-
Confidence 4445554 69999433222222 12222 2235678888889998888777 7777764 2 25555555444444
Q ss_pred Hh--CCCEEE
Q 016682 182 EG--GMDAIK 189 (384)
Q Consensus 182 ea--GAdaVK 189 (384)
+. |+++|-
T Consensus 182 ~~~~G~~gi~ 191 (294)
T cd04741 182 AFACPISFIT 191 (294)
T ss_pred ccccCCcEEE
Confidence 56 888877
No 461
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=84.08 E-value=11 Score=35.77 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=60.9
Q ss_pred HHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEE--ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC--CCcE
Q 016682 81 LTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICL--VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLL 156 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~Il--VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~--~~~v 156 (384)
+.-++.+++.|-++.+-++|+...|.++-+||.+.|. +|= +.-+|.+ .+ +++..+..+.+..+ .-++
T Consensus 91 l~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR---~~~~g~d-----g~-~~i~~i~~~~~~~~~~tkil 161 (211)
T cd00956 91 LKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGR---IDDLGGD-----GM-ELIREIRTIFDNYGFDTKIL 161 (211)
T ss_pred HHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecCh---HhhcCCC-----HH-HHHHHHHHHHHHcCCCceEE
Confidence 6677888888999999999999999999999999974 541 1122332 22 33444444444433 2222
Q ss_pred EEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 157 VGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 157 vaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
+ .|+ .|+.+.+ +.+ ++||+.|++
T Consensus 162 ~-----As~-r~~~ei~----~a~-~~Gad~vTv 184 (211)
T cd00956 162 A-----ASI-RNPQHVI----EAA-LAGADAITL 184 (211)
T ss_pred e-----ccc-CCHHHHH----HHH-HcCCCEEEe
Confidence 2 367 5888885 455 589999999
No 462
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.97 E-value=46 Score=32.80 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=101.5
Q ss_pred CHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhh--------hcc----CCCCcCCCHHHHHHHHHHH
Q 016682 80 TLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMV--------VHG----HDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv--------~lG----~~dT~~VtldeMl~h~raV 147 (384)
-+..|++.+++-..-++.+.+|..++..+++. +|++-+|.-.... .+| ...+...+++|++..+..|
T Consensus 79 gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i 157 (266)
T PRK13398 79 GLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYI 157 (266)
T ss_pred HHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 34556666655566688899999999999999 9999998543322 123 3445566999999988887
Q ss_pred Hc-ccCCCcEEEeC---CCCCCcCCHHHHHHHHHHHHHHh-CCCEEE----eCCCccchHHHHHHHHHcCCc-eeeeccC
Q 016682 148 AR-GAKRPLLVGDL---PFGTYESSTNQAVDTAVRILKEG-GMDAIK----LEGGSPSRITAARGIVEAGIA-VMGHVGL 217 (384)
Q Consensus 148 ~R-ga~~~~vvaDm---PfgsY~~s~e~av~nA~rl~kea-GAdaVK----LEgg~~e~~~~I~alv~aGIP-V~gHiGL 217 (384)
.. |.++ +++..- .|-+|. ....=-++...+++. +.-.+. --|..+.......+.+..|+. +|.=.=+
T Consensus 158 ~~~Gn~~-i~L~~rG~~t~~~Y~--~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 158 MSEGNEN-VVLCERGIRTFETYT--RNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred HhcCCCe-EEEEECCCCCCCCCC--HHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 63 4433 333332 233563 444444455666643 544222 112223345667777788876 3433337
Q ss_pred CcccccccCCccccCCCHHHHHHHHHHHHHHHHc
Q 016682 218 TPQAISVLGGFRPQGKNVTSAVKVVETALALQEV 251 (384)
Q Consensus 218 tPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeA 251 (384)
||.+.-.. + .+--+.++.++++++.+.+.++
T Consensus 235 ~pd~a~~D-~--~~sl~p~~l~~l~~~i~~~~~~ 265 (266)
T PRK13398 235 EPEKALSD-A--RQTLNFEEMKELVDELKPMAKA 265 (266)
T ss_pred CccccCCc-h--hhcCCHHHHHHHHHHHHHHHhh
Confidence 88765422 2 2445677888999888887653
No 463
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.95 E-value=14 Score=34.29 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHH
Q 016682 168 STNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALA 247 (384)
Q Consensus 168 s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkA 247 (384)
+++++++.+..++ ++|+..|.+-.-.....+.++.+.+.. |.|- +| .|.+ -+.+++..
T Consensus 22 ~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~-~~~~-~g--------~gtv-----------l~~d~~~~ 79 (187)
T PRK07455 22 DLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKL-PECI-IG--------TGTI-----------LTLEDLEE 79 (187)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhC-CCcE-Ee--------EEEE-----------EcHHHHHH
Confidence 7889999888888 699999999654334455666665432 3220 00 0001 11246666
Q ss_pred HHHcCCcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCCCchhhhHh----hhhcCC
Q 016682 248 LQEVGCFSVVLECVPPPVAAAATSALQIPTIGIGAGPFCSGQVLVYH----DLLGMM 300 (384)
Q Consensus 248 leeAGAf~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~cDGQvLV~~----DlLG~~ 300 (384)
..++||+.|++.+...++.. +++..+++.+ +| ..+.-++.=.. |.+|++
T Consensus 80 A~~~gAdgv~~p~~~~~~~~-~~~~~~~~~i-~G--~~t~~e~~~A~~~Gadyv~~F 132 (187)
T PRK07455 80 AIAAGAQFCFTPHVDPELIE-AAVAQDIPII-PG--ALTPTEIVTAWQAGASCVKVF 132 (187)
T ss_pred HHHcCCCEEECCCCCHHHHH-HHHHcCCCEE-cC--cCCHHHHHHHHHCCCCEEEEC
Confidence 67899999999999988755 4777788865 67 34555553333 666665
No 464
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=83.95 E-value=41 Score=32.13 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=96.0
Q ss_pred CCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc-EE
Q 016682 79 VTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL-LV 157 (384)
Q Consensus 79 ~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~-vv 157 (384)
.|..+++++-++ +.+.||..+.|--+. +..++....+.+..+ .+
T Consensus 15 ~t~~~i~~lc~~-----------------A~~~~~~avcv~p~~------------------v~~a~~~l~~~~v~v~tV 59 (211)
T TIGR00126 15 TTEEDIITLCAQ-----------------AKTYKFAAVCVNPSY------------------VPLAKELLKGTEVRICTV 59 (211)
T ss_pred CCHHHHHHHHHH-----------------HHhhCCcEEEeCHHH------------------HHHHHHHcCCCCCeEEEE
Confidence 466677666543 234588888885332 444444444444332 34
Q ss_pred EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC--------CCccchHHHHHHHHHc--CCceeeeccCCcccccccCC
Q 016682 158 GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE--------GGSPSRITAARGIVEA--GIAVMGHVGLTPQAISVLGG 227 (384)
Q Consensus 158 aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE--------gg~~e~~~~I~alv~a--GIPV~gHiGLtPQ~~~~lgG 227 (384)
.++|||.. +.+.-+.-+.+.+ +.|||.|-+= |...+..+-|++++++ |+||.-- .+ . +
T Consensus 60 igFP~G~~--~~~~K~~E~~~Av-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvI---lE-----~-~ 127 (211)
T TIGR00126 60 VGFPLGAS--TTDVKLYETKEAI-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVI---IE-----T-G 127 (211)
T ss_pred eCCCCCCC--cHHHHHHHHHHHH-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEE---Ee-----c-C
Confidence 89999553 4554455556667 5899987552 2224556667777764 7776531 11 1 1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEe------cCCCHHHHHHHHhhcC--CCEEEEcCCCCCCchhhhHh----h
Q 016682 228 FRPQGKNVTSAVKVVETALALQEVGCFSVVL------ECVPPPVAAAATSALQ--IPTIGIGAGPFCSGQVLVYH----D 295 (384)
Q Consensus 228 frvqGrt~~~a~~ll~rAkAleeAGAf~Ivl------E~Vp~ela~~It~~l~--IPtIGIGAG~~cDGQvLV~~----D 295 (384)
+ -++ +++..-++...++|||.|=. .+...+-++.+.+.++ +|+-. -.|..+.-|.+-+- |
T Consensus 128 ~----L~~---~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKa-aGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 128 L----LTD---EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKA-SGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred C----CCH---HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHHHHHhhH
Confidence 2 133 35678888999999998843 3344455566666554 44432 23444666666655 4
Q ss_pred hhcCC
Q 016682 296 LLGMM 300 (384)
Q Consensus 296 lLG~~ 300 (384)
.+|.+
T Consensus 200 riGts 204 (211)
T TIGR00126 200 RIGAS 204 (211)
T ss_pred HhCcc
Confidence 45543
No 465
>PLN02979 glycolate oxidase
Probab=83.82 E-value=13 Score=38.50 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 77 ~~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
..+|.++|..+++ -+-||++=.+-+...|+.+.++|+|.|.|+-+.|-. .|..+-|++-+.+..+++. ++..
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq----ld~~p~t~~~L~ei~~~~~---~~~~ 280 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ----LDYVPATISALEEVVKATQ---GRIP 280 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC----CCCchhHHHHHHHHHHHhC---CCCe
Confidence 3578888876653 346888889999999999999999999988776532 3555555555544444442 2334
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|++| |+.. +..+.+ +.+ ..||++|-+
T Consensus 281 Vi~d---GGIr-~G~Di~----KAL-ALGAdaV~i 306 (366)
T PLN02979 281 VFLD---GGVR-RGTDVF----KAL-ALGASGIFI 306 (366)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEE
Confidence 8888 5663 455553 455 579999988
No 466
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=83.78 E-value=18 Score=36.88 Aligned_cols=106 Identities=19% Similarity=0.317 Sum_probs=71.9
Q ss_pred CcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCC--cEEEeCCC-----
Q 016682 92 EPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRP--LLVGDLPF----- 162 (384)
Q Consensus 92 ~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~--~vvaDmPf----- 162 (384)
-|+++= -+.|+...+.+=++||+-+.+ |....+++|-+..++.|++-+..- .|=+-+..
T Consensus 86 VPV~lHLDHg~~~e~i~~ai~~GftSVMi------------D~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e 153 (321)
T PRK07084 86 IPIVLHLDHGDSFELCKDCIDSGFSSVMI------------DGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE 153 (321)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEe------------eCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 465544 577888888888899988875 344568999999999987765421 01011111
Q ss_pred -------CCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc--------------cchHHHHHHHHHc--CCceeee
Q 016682 163 -------GTYESSTNQAVDTAVRILKEGGMDAIKLEGGS--------------PSRITAARGIVEA--GIAVMGH 214 (384)
Q Consensus 163 -------gsY~~s~e~av~nA~rl~keaGAdaVKLEgg~--------------~e~~~~I~alv~a--GIPV~gH 214 (384)
..| .+|+++ .++++++|+|++=+-=|+ .-..++++.|.++ +||.+-|
T Consensus 154 d~~~~~~~~~-T~peeA----~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLH 223 (321)
T PRK07084 154 DEVSAEHHTY-TQPEEV----EDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLH 223 (321)
T ss_pred CCccCccccc-CCHHHH----HHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEe
Confidence 116 689888 579989999988765331 1345777777764 6999988
No 467
>PRK07695 transcriptional regulator TenI; Provisional
Probab=83.78 E-value=8.1 Score=35.56 Aligned_cols=121 Identities=19% Similarity=0.218 Sum_probs=71.8
Q ss_pred HHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC--CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCC
Q 016682 109 DSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMD 186 (384)
Q Consensus 109 e~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~--~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAd 186 (384)
=++|+++|..-+- ..+-++....++.+.+... ..+++-| + ..+..+.|++
T Consensus 24 ~~~g~~~iqlR~k------------~~~~~~~~~~~~~l~~~~~~~~~liin~-~---------------~~la~~~~~~ 75 (201)
T PRK07695 24 IHSEVDYIHIRER------------EKSAKELYEGVESLLKKGVPASKLIIND-R---------------VDIALLLNIH 75 (201)
T ss_pred HhCCCCEEEEcCC------------CCCHHHHHHHHHHHHHhCCCCCeEEEEC-H---------------HHHHHHcCCC
Confidence 4678999877632 2566777777777765422 2334433 1 1234467999
Q ss_pred EEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC-----
Q 016682 187 AIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV----- 261 (384)
Q Consensus 187 aVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V----- 261 (384)
+|++... ......++... .+.. ||.+ + .| +++++..+++|++.|++-.+
T Consensus 76 gvHl~~~-~~~~~~~r~~~-~~~~----ig~s-----------~--~s-------~e~a~~a~~~Gadyi~~g~v~~t~~ 129 (201)
T PRK07695 76 RVQLGYR-SFSVRSVREKF-PYLH----VGYS-----------V--HS-------LEEAIQAEKNGADYVVYGHVFPTDC 129 (201)
T ss_pred EEEeCcc-cCCHHHHHHhC-CCCE----EEEe-----------C--CC-------HHHHHHHHHcCCCEEEECCCCCCCC
Confidence 9999654 33233333221 1211 1111 0 12 33466778899999986422
Q ss_pred -------CHHHHHHHHhhcCCCEEEEcCC
Q 016682 262 -------PPPVAAAATSALQIPTIGIGAG 283 (384)
Q Consensus 262 -------p~ela~~It~~l~IPtIGIGAG 283 (384)
..+..+.+.+.+++|++.+|.=
T Consensus 130 k~~~~~~g~~~l~~~~~~~~ipvia~GGI 158 (201)
T PRK07695 130 KKGVPARGLEELSDIARALSIPVIAIGGI 158 (201)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCEEEEcCC
Confidence 1367788999999999999854
No 468
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.68 E-value=31 Score=40.70 Aligned_cols=142 Identities=23% Similarity=0.223 Sum_probs=87.0
Q ss_pred HHHHHHhhhCCCcEEEEec------CCh----H---HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHH
Q 016682 81 LTHLRQKHKNGEPITMVTA------YDY----P---SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAV 147 (384)
Q Consensus 81 ~~~lr~~k~~g~~I~mlTA------yD~----~---sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV 147 (384)
+..|++.- .+.+|.|+.= |.. . .-+.+-++|+|++=+.|++.- ++.|...+++|
T Consensus 597 l~~~r~~~-~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd------------~~~~~~~i~~v 663 (1146)
T PRK12999 597 LAELREAA-PNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW------------VENMRVAIDAV 663 (1146)
T ss_pred HHHHHHhC-CCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh------------HHHHHHHHHHH
Confidence 45555544 4467777643 221 1 234567789999999886622 46677788888
Q ss_pred HcccCCCcEE----EeCC--CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeeec
Q 016682 148 ARGAKRPLLV----GDLP--FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGHV 215 (384)
Q Consensus 148 ~Rga~~~~vv----aDmP--fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gHi 215 (384)
+..-....+. +|+. +.+. .+++-.++.|.++. +.||+.|.|-|-. .+..+.|++|.++ ++|+--|
T Consensus 664 k~~g~~~~~~i~ytg~~~d~~~~~-~~~~~~~~~a~~l~-~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H- 740 (1146)
T PRK12999 664 RETGKIAEAAICYTGDILDPARAK-YDLDYYVDLAKELE-KAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLH- 740 (1146)
T ss_pred HHcCCeEEEEEEEEecCCCCCCCC-CCHHHHHHHHHHHH-HcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEE-
Confidence 6542111111 3322 2121 37777777777766 7999999999852 5566778888764 7888777
Q ss_pred cCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEE
Q 016682 216 GLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSV 256 (384)
Q Consensus 216 GLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~I 256 (384)
..+.+| -.+.-..+-.+|||+.|
T Consensus 741 -----~Hnt~G-------------la~an~laA~~aGad~v 763 (1146)
T PRK12999 741 -----THDTSG-------------NGLATYLAAAEAGVDIV 763 (1146)
T ss_pred -----eCCCCc-------------hHHHHHHHHHHhCCCEE
Confidence 223332 12335556668999854
No 469
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.59 E-value=37 Score=31.42 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=86.1
Q ss_pred HhhhCCCcEEEEecCChHHHHH----HHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCC
Q 016682 86 QKHKNGEPITMVTAYDYPSAVH----LDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLP 161 (384)
Q Consensus 86 ~~k~~g~~I~mlTAyD~~sA~i----ae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmP 161 (384)
++..+.+-|.++...|...|.- +-++|+++|-+-+.- -+-.|.+..++.... .. .+..
T Consensus 7 ~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~------------~~~~e~~~~~~~~~~---~~-~~g~-- 68 (187)
T PRK07455 7 AQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNS------------DQPAELISQLREKLP---EC-IIGT-- 68 (187)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC------------CCHHHHHHHHHHhCC---Cc-EEeE--
Confidence 3334556788888888876543 335699999654322 134567766665432 11 2322
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHH
Q 016682 162 FGTYESSTNQAVDTAVRILKEGGMDAIKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKV 241 (384)
Q Consensus 162 fgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~l 241 (384)
|+. .+.+++ ++..+.||++|.+-.- -.+.++.....+++.+ . | -.|..+
T Consensus 69 -gtv-l~~d~~-----~~A~~~gAdgv~~p~~---~~~~~~~~~~~~~~~i------------~-G----~~t~~e---- 117 (187)
T PRK07455 69 -GTI-LTLEDL-----EEAIAAGAQFCFTPHV---DPELIEAAVAQDIPII------------P-G----ALTPTE---- 117 (187)
T ss_pred -EEE-EcHHHH-----HHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEE------------c-C----cCCHHH----
Confidence 333 355555 3444799999977443 2445666667777542 1 2 134333
Q ss_pred HHHHHHHHHcCCcEEEe-cCC---CHHHHHHHHhhc-CCCEEEEc
Q 016682 242 VETALALQEVGCFSVVL-ECV---PPPVAAAATSAL-QIPTIGIG 281 (384)
Q Consensus 242 l~rAkAleeAGAf~Ivl-E~V---p~ela~~It~~l-~IPtIGIG 281 (384)
+....++||+.|-+ +.- ..+..+.+...+ ++|++-||
T Consensus 118 ---~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvaiG 159 (187)
T PRK07455 118 ---IVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPTG 159 (187)
T ss_pred ---HHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEeC
Confidence 33334689998843 332 267789999999 59999998
No 470
>PRK06256 biotin synthase; Validated
Probab=83.48 E-value=19 Score=35.75 Aligned_cols=96 Identities=24% Similarity=0.321 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe--CCC------------ccchHHHHH
Q 016682 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL--EGG------------SPSRITAAR 202 (384)
Q Consensus 137 ldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL--Egg------------~~e~~~~I~ 202 (384)
+++++..++.|.+..... +.+-. +. .+.+.+ +.++++|++.|.+ |.. .++..+.|+
T Consensus 125 ~~~~~e~i~~i~~~~~i~-~~~~~---g~-l~~e~l-----~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~ 194 (336)
T PRK06256 125 VDQVVEAVKAIKEETDLE-ICACL---GL-LTEEQA-----ERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCE 194 (336)
T ss_pred HHHHHHHHHHHHhcCCCc-EEecC---Cc-CCHHHH-----HHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHH
Confidence 567778888887653322 33332 23 466655 5677899998865 431 145567888
Q ss_pred HHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEE
Q 016682 203 GIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVV 257 (384)
Q Consensus 203 alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Iv 257 (384)
.+.++||+|+.+ .+=|+ |-|.++.. +-+..+.+.|.+.+-
T Consensus 195 ~a~~~Gi~v~~~---------~I~Gl---gEt~ed~~---~~~~~l~~l~~~~v~ 234 (336)
T PRK06256 195 MVKAAGIEPCSG---------GIIGM---GESLEDRV---EHAFFLKELDADSIP 234 (336)
T ss_pred HHHHcCCeeccC---------eEEeC---CCCHHHHH---HHHHHHHhCCCCEEe
Confidence 888999998754 11122 55555444 445555677777543
No 471
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=83.42 E-value=11 Score=37.43 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHcccCCCcEE---EeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-------cchHHHHHHHHHcCCceeeec
Q 016682 146 AVARGAKRPLLV---GDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS-------PSRITAARGIVEAGIAVMGHV 215 (384)
Q Consensus 146 aV~Rga~~~~vv---aDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~-------~e~~~~I~alv~aGIPV~gHi 215 (384)
+++.-.++-|+. .|.. +++.+.+-..|.+++.|..++|+.... +...+..+++.+.|+||+-|.
T Consensus 91 ~~~~~~pdrf~~~~~v~p~------~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~iht 164 (293)
T COG2159 91 ALAAEYPDRFVGFARVDPR------DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHT 164 (293)
T ss_pred HHHhhCCcceeeeeeeCCC------chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEe
Confidence 344445655554 3332 235677777888888999999997642 334788999999999999999
Q ss_pred cCCcc
Q 016682 216 GLTPQ 220 (384)
Q Consensus 216 GLtPQ 220 (384)
|.+|-
T Consensus 165 G~~~~ 169 (293)
T COG2159 165 GAGPG 169 (293)
T ss_pred CCCCC
Confidence 98773
No 472
>PRK07094 biotin synthase; Provisional
Probab=83.29 E-value=31 Score=33.94 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=65.9
Q ss_pred HHHHHcCCCEEE-ecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 106 VHLDSAGIDICL-VGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 106 ~iae~AGiD~Il-VGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
+.+.+.|++-+. +| |.+. ....+.+...++.|.+-.+.. +. +..|. .+.+.. +.++++|
T Consensus 80 ~~~~~~g~~~i~l~g--------G~~~--~~~~~~l~~l~~~i~~~~~l~-i~--~~~g~--~~~e~l-----~~Lk~aG 139 (323)
T PRK07094 80 KKAYELGYRTIVLQS--------GEDP--YYTDEKIADIIKEIKKELDVA-IT--LSLGE--RSYEEY-----KAWKEAG 139 (323)
T ss_pred HHHHHCCCCEEEEec--------CCCC--CCCHHHHHHHHHHHHccCCce-EE--EecCC--CCHHHH-----HHHHHcC
Confidence 345567888774 43 2111 235677777788876642222 22 22222 344444 5677899
Q ss_pred CCEEEe--CCCc-------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 185 MDAIKL--EGGS-------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 185 AdaVKL--Egg~-------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
++.|.+ |.+. ++..+.|+.+.++||+|+.+ .+=| .-|.|.++..+.++. +.
T Consensus 140 ~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~---------~iiG--lpget~ed~~~~l~~---l~ 205 (323)
T PRK07094 140 ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSG---------FMVG--LPGQTLEDLADDILF---LK 205 (323)
T ss_pred CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecce---------EEEE--CCCCCHHHHHHHHHH---HH
Confidence 998754 5431 56667888888999988754 1111 125566555554444 44
Q ss_pred HcCCcEE
Q 016682 250 EVGCFSV 256 (384)
Q Consensus 250 eAGAf~I 256 (384)
+.+.+.+
T Consensus 206 ~l~~~~v 212 (323)
T PRK07094 206 ELDLDMI 212 (323)
T ss_pred hCCCCee
Confidence 5565543
No 473
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=83.24 E-value=3.2 Score=42.62 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEE---Eecc--hhhhhhccCCCC---cCCCHHHHHHHHHHHHccc---CCCcEEEeCCCCCCcCCHHHHH
Q 016682 105 AVHLDSAGIDIC---LVGD--SAAMVVHGHDTT---LPITLEEMLVHCRAVARGA---KRPLLVGDLPFGTYESSTNQAV 173 (384)
Q Consensus 105 A~iae~AGiD~I---lVGD--Sl~mv~lG~~dT---~~VtldeMl~h~raV~Rga---~~~~vvaDmPfgsY~~s~e~av 173 (384)
||++.+.|.|+| ++|| +...+.+|..+. ..++.+.....++-|.+++ +.|+|++ |+-..+.++.+
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviA----GG~k~~~~e~L 298 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINS----GGASKGEDDLL 298 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEe----CCCCCCHHHHH
Q ss_pred HHHHHH---HHHhCCCEE
Q 016682 174 DTAVRI---LKEGGMDAI 188 (384)
Q Consensus 174 ~nA~rl---~keaGAdaV 188 (384)
+.+... + ++|+.||
T Consensus 299 ~~v~~a~~~i-~aGa~Gv 315 (348)
T PRK09250 299 DAVRTAVINK-RAGGMGL 315 (348)
T ss_pred HHHHHHHHhh-hcCCcch
No 474
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.80 E-value=27 Score=35.93 Aligned_cols=128 Identities=8% Similarity=0.047 Sum_probs=70.9
Q ss_pred CCCCHHHHHHhhhCCCcEEEEecCChHHHHHHHHcCCCEE-Eecch--hhhhhcc-CC----C--Cc--CCCHHHHHHHH
Q 016682 77 QRVTLTHLRQKHKNGEPITMVTAYDYPSAVHLDSAGIDIC-LVGDS--AAMVVHG-HD----T--TL--PITLEEMLVHC 144 (384)
Q Consensus 77 ~~~t~~~lr~~k~~g~~I~mlTAyD~~sA~iae~AGiD~I-lVGDS--l~mv~lG-~~----d--T~--~VtldeMl~h~ 144 (384)
+.+|..++.+..+.= .-.|+.+.+||||.| +=+-. |-.-.|- .. | ++ .=-+.-.++..
T Consensus 132 ~~mt~~eI~~ii~~f----------~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii 201 (361)
T cd04747 132 REMTEADIDDVIAAF----------ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVV 201 (361)
T ss_pred ccCCHHHHHHHHHHH----------HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 568999988876531 257888999999999 43211 1111111 11 1 11 11133345666
Q ss_pred HHHHcccCCCc-EEEeCC------CC-CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc----------cchHHHHHHHHH
Q 016682 145 RAVARGAKRPL-LVGDLP------FG-TYESSTNQAVDTAVRILKEGGMDAIKLEGGS----------PSRITAARGIVE 206 (384)
Q Consensus 145 raV~Rga~~~~-vvaDmP------fg-sY~~s~e~av~nA~rl~keaGAdaVKLEgg~----------~e~~~~I~alv~ 206 (384)
++|+..++.-| |..=+. |+ ..+.++++.++-+..+. +.|+|.|.+-.+. ...+..++..
T Consensus 202 ~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~-~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~-- 278 (361)
T cd04747 202 KAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV-DAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKL-- 278 (361)
T ss_pred HHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCccCCCcCccchhHHHHHHHH--
Confidence 77777664333 333222 21 11357888887776654 7899999986651 1123334443
Q ss_pred cCCceeeeccC
Q 016682 207 AGIAVMGHVGL 217 (384)
Q Consensus 207 aGIPV~gHiGL 217 (384)
.++||++.=|+
T Consensus 279 ~~~pv~~~G~i 289 (361)
T cd04747 279 TGLPTITVGSV 289 (361)
T ss_pred cCCCEEEECCc
Confidence 37899876444
No 475
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=82.79 E-value=28 Score=34.14 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=70.7
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcC--CCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLP--ITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKE 182 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~--VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ke 182 (384)
++.++++|||.|=+|.- ..|...| -.-+++ .+.+.+.. +..+..+-.+.++ ++ +.+ +
T Consensus 26 ~~~L~~~Gv~~IEvGs~------~~~~~~p~~~d~~~~---~~~l~~~~-------~~~~~~~~~~~~d-v~---~A~-~ 84 (274)
T cd07938 26 IDALSAAGLRRIEVTSF------VSPKWVPQMADAEEV---LAGLPRRP-------GVRYSALVPNLRG-AE---RAL-A 84 (274)
T ss_pred HHHHHHcCCCEEEeCCC------CCcccccccCCHHHH---HhhcccCC-------CCEEEEECCCHHH-HH---HHH-H
Confidence 56689999999999842 2222111 122233 23332211 1222222223333 33 444 6
Q ss_pred hCCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHH
Q 016682 183 GGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETA 245 (384)
Q Consensus 183 aGAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rA 245 (384)
+|++.|.+-... +...+.|+.+.+.|+.|.+.+-.+ + +.-..|++ ..+.+++-+
T Consensus 85 ~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~------f-~~~~~~~~--~~~~~~~~~ 155 (274)
T cd07938 85 AGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA------F-GCPYEGEV--PPERVAEVA 155 (274)
T ss_pred cCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE------e-cCCCCCCC--CHHHHHHHH
Confidence 899999887542 123455777778899887654311 1 11123444 346788888
Q ss_pred HHHHHcCCcEEEec
Q 016682 246 LALQEVGCFSVVLE 259 (384)
Q Consensus 246 kAleeAGAf~IvlE 259 (384)
+.+.++|++.|.+-
T Consensus 156 ~~~~~~Ga~~i~l~ 169 (274)
T cd07938 156 ERLLDLGCDEISLG 169 (274)
T ss_pred HHHHHcCCCEEEEC
Confidence 88899999999987
No 476
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=82.72 E-value=15 Score=37.99 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCCHHHHHHhhh-CCCcEEEEecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCc
Q 016682 77 QRVTLTHLRQKHK-NGEPITMVTAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPL 155 (384)
Q Consensus 77 ~~~t~~~lr~~k~-~g~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~ 155 (384)
..+|.++|..+++ -+-||++=..-+...|+.+-++|+|.|.|+-..|- ..|..+-|++-+.+..++|. +...
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGr----qld~~~~t~~~L~ei~~av~---~~~~ 281 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGAR----QLDYVPATISALEEVVKATQ---GRIP 281 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCC----CCCCchhHHHHHHHHHHHhC---CCCe
Confidence 3568888776654 34688888999999999999999999998877663 34555555555544444442 2233
Q ss_pred EEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Q 016682 156 LVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKL 190 (384)
Q Consensus 156 vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKL 190 (384)
|++| |+.. +..+.+ +.+ ..||++|-+
T Consensus 282 vi~d---GGIr-~G~Dv~----KAL-ALGA~aV~i 307 (367)
T PLN02493 282 VFLD---GGVR-RGTDVF----KAL-ALGASGIFI 307 (367)
T ss_pred EEEe---CCcC-cHHHHH----HHH-HcCCCEEEE
Confidence 8888 6664 555553 455 479999988
No 477
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=82.71 E-value=47 Score=33.08 Aligned_cols=128 Identities=17% Similarity=0.229 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeC--------CCc--------------
Q 016682 137 LEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLE--------GGS-------------- 194 (384)
Q Consensus 137 ldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLE--------gg~-------------- 194 (384)
+++....+++-.|++-.||+++- | .+++..++....|. ++|||++-|- ||.
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~G-----d-P~~e~s~e~i~~L~-~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~ 76 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAG-----D-PDLETSLEIIKTLV-EAGADILELGVPFSDPVADGPTIQAAHLRALAAGV 76 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCC-----C-CCHHHHHHHHHHHH-hCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCC
Confidence 45566667777777777777643 3 35556666555566 6999997663 220
Q ss_pred --cchHHHHHHHHH--cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHH---
Q 016682 195 --PSRITAARGIVE--AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVPPPVAA--- 267 (384)
Q Consensus 195 --~e~~~~I~alv~--aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~--- 267 (384)
+...+.++.+++ .+||+.-=.=++|-.. .| +-+=.+...++|++++++.=+|.|...
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~--------~G--------ie~F~~~~~~~GvdGlivpDLP~ee~~~~~ 140 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN--------YG--------IEKFLRRAKEAGVDGLLVPDLPPEESDELL 140 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH--------hh--------HHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Confidence 344556666664 3455542111222110 11 112255667899999999988855544
Q ss_pred HHHhhcCCCEEEEcCCCCCC
Q 016682 268 AATSALQIPTIGIGAGPFCS 287 (384)
Q Consensus 268 ~It~~l~IPtIGIGAG~~cD 287 (384)
..+++-+|=.|-+-+...+|
T Consensus 141 ~~~~~~gi~~I~lvaPtt~~ 160 (265)
T COG0159 141 KAAEKHGIDPIFLVAPTTPD 160 (265)
T ss_pred HHHHHcCCcEEEEeCCCCCH
Confidence 44556677777777776653
No 478
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=82.71 E-value=20 Score=37.08 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--Cc-----cchHHHHHHHHH
Q 016682 134 PITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GS-----PSRITAARGIVE 206 (384)
Q Consensus 134 ~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg--g~-----~e~~~~I~alv~ 206 (384)
.++++++ +.+++..+.|+++=. - .+++++ .+++ +.|+++|.+.+ |. ....+.+..+++
T Consensus 214 ~~~w~~i----~~l~~~~~~PvivKG-----v-~~~eda----~~a~-~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~ 278 (367)
T TIGR02708 214 KLSPRDI----EEIAGYSGLPVYVKG-----P-QCPEDA----DRAL-KAGASGIWVTNHGGRQLDGGPAAFDSLQEVAE 278 (367)
T ss_pred CCCHHHH----HHHHHhcCCCEEEeC-----C-CCHHHH----HHHH-HcCcCEEEECCcCccCCCCCCcHHHHHHHHHH
Confidence 4666553 566777788877752 2 235555 4565 79999998874 21 122344555544
Q ss_pred ---cCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEec
Q 016682 207 ---AGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLE 259 (384)
Q Consensus 207 ---aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE 259 (384)
..|||++ .||. |+- .+-.|+++ .||+++.+=
T Consensus 279 av~~~i~vi~-----------dGGI----r~g------~Dv~KaLa-lGAd~V~ig 312 (367)
T TIGR02708 279 AVDKRVPIVF-----------DSGV----RRG------QHVFKALA-SGADLVALG 312 (367)
T ss_pred HhCCCCcEEe-----------eCCc----CCH------HHHHHHHH-cCCCEEEEc
Confidence 2477764 4664 222 22345555 899998864
No 479
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=82.69 E-value=27 Score=35.66 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCcEEEecCC-CHHHHHHHHhhc-------CCCEEEEcCCCCCCchhhhHhhhhcCC
Q 016682 234 NVTSAVKVVETALALQEVGCFSVVLECV-PPPVAAAATSAL-------QIPTIGIGAGPFCSGQVLVYHDLLGMM 300 (384)
Q Consensus 234 t~~~a~~ll~rAkAleeAGAf~IvlE~V-p~ela~~It~~l-------~IPtIGIGAG~~cDGQvLV~~DlLG~~ 300 (384)
+++..+.+.+.|..+.+||||+|=.-.. +-.+ ..|.+.| ++|+++.- ..+++.=.==+-|.+|-.
T Consensus 136 ND~Tl~~L~k~Avs~A~AGADiVAPSdMMDGrV-~aIR~aLD~~G~~~~v~ImSYs-aKyaS~fYGPFRdAa~Sa 208 (320)
T cd04824 136 NEASVKRLAEVALAYAKAGAHIVAPSDMMDGRV-RAIKQALIQAGLGNKVSVMSYS-AKFASCLYGPFRDAACSA 208 (320)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEecccccccHH-HHHHHHHHHCCCccCCeeeehH-HHhhhhccchHHHHhcCC
Confidence 5667788999999999999998876544 4333 4555443 46666552 233333333345666654
No 480
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=82.66 E-value=39 Score=35.47 Aligned_cols=154 Identities=21% Similarity=0.243 Sum_probs=94.6
Q ss_pred HHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 104 SAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 104 sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
-|+.++++|+|.|=+|+.. +-......++++.. ..++ .+..-+ ......++.....+.++
T Consensus 29 Ia~~Ld~lGv~~IE~g~p~-------------~s~~~~~~~~~i~~--~~~~----~~~~~~-~~~~~~~~~~~ea~~~a 88 (409)
T COG0119 29 IAKALDDLGVDYIEAGFPV-------------ASPGDFEFVRAIAE--KAGL----FICALI-AALARAIKRDIEALLEA 88 (409)
T ss_pred HHHHHHHcCCCEEEEeCCc-------------CChhhHHHHHHHHH--hcCc----ccchhh-hhhHHhHHhhHHHHHhC
Confidence 3677999999999998433 22333445566654 2221 111112 22333444333344479
Q ss_pred CCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHH
Q 016682 184 GMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETAL 246 (384)
Q Consensus 184 GAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAk 246 (384)
|++.|.+=... +-..+.++.+.+.|++|.++ |. .+. ||+ -+.+++-++
T Consensus 89 ~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~----~E------d~~---rt~--~~~l~~~~~ 153 (409)
T COG0119 89 GVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS----AE------DAT---RTD--PEFLAEVVK 153 (409)
T ss_pred CCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE----ee------ccc---cCC--HHHHHHHHH
Confidence 99998876542 33456777888899988763 21 111 443 456777788
Q ss_pred HHHHcCCcEEEec----C-CC---HHHHHHHHhhcC--CC------------------------------EEEEc--CCC
Q 016682 247 ALQEVGCFSVVLE----C-VP---PPVAAAATSALQ--IP------------------------------TIGIG--AGP 284 (384)
Q Consensus 247 AleeAGAf~IvlE----~-Vp---~ela~~It~~l~--IP------------------------------tIGIG--AG~ 284 (384)
++.++||..|.+. + .| .++.+.|.+.++ +| ++||| +|+
T Consensus 154 ~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGERaGn 233 (409)
T COG0119 154 AAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGERAGN 233 (409)
T ss_pred HHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccceecccc
Confidence 8889999999976 2 25 355666666554 33 57999 998
Q ss_pred CCCchhhh
Q 016682 285 FCSGQVLV 292 (384)
Q Consensus 285 ~cDGQvLV 292 (384)
..-.+++.
T Consensus 234 a~l~~v~~ 241 (409)
T COG0119 234 AALEEVVL 241 (409)
T ss_pred ccHHHHHH
Confidence 87777764
No 481
>PRK08227 autoinducer 2 aldolase; Validated
Probab=82.63 E-value=12 Score=37.07 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=55.9
Q ss_pred HhCCCEEEeC---CCc--cchHHHHHHHH----HcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcC
Q 016682 182 EGGMDAIKLE---GGS--PSRITAARGIV----EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (384)
Q Consensus 182 eaGAdaVKLE---gg~--~e~~~~I~alv----~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG 252 (384)
+.|||||.+- |+. .++...+..++ +-|+|+++ ..|+ |.. +. + +.+-+---++.-.|.|
T Consensus 105 rlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla---~~pr-----G~~-~~--~--~~~~ia~aaRiaaELG 171 (264)
T PRK08227 105 RLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA---VTAV-----GKD-MV--R--DARYFSLATRIAAEMG 171 (264)
T ss_pred HCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE---EecC-----CCC-cC--c--hHHHHHHHHHHHHHHc
Confidence 3689988774 221 23333333333 57999996 3443 211 11 1 2235555677888999
Q ss_pred CcEEEecCCCHHHHHHHHhhcCCCEEEEcCCCCC
Q 016682 253 CFSVVLECVPPPVAAAATSALQIPTIGIGAGPFC 286 (384)
Q Consensus 253 Af~IvlE~Vp~ela~~It~~l~IPtIGIGAG~~c 286 (384)
||.|=+.-. .+..+++++..++|++ |-.|+.+
T Consensus 172 ADiVK~~y~-~~~f~~vv~a~~vPVv-iaGG~k~ 203 (264)
T PRK08227 172 AQIIKTYYV-EEGFERITAGCPVPIV-IAGGKKL 203 (264)
T ss_pred CCEEecCCC-HHHHHHHHHcCCCcEE-EeCCCCC
Confidence 998876654 3677889999999999 5445544
No 482
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=82.49 E-value=15 Score=37.23 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCCCc----cchHHHHHHHHHc---CCceeeeccCCcccccccCCccccCCCHHHHH
Q 016682 167 SSTNQAVDTAVRILKEGGMDAIKLEGGS----PSRITAARGIVEA---GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 167 ~s~e~av~nA~rl~keaGAdaVKLEgg~----~e~~~~I~alv~a---GIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
.++++..+.+.+.. +.|.+++||-.+. ++-.+.|++++++ .++++- ..- +|-|. +
T Consensus 142 ~~~~~~~~~a~~~~-~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~v---------Dan-----~~~~~---~ 203 (368)
T cd03329 142 ESPEAYADFAEECK-ALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMH---------DGA-----HWYSR---A 203 (368)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEE---------ECC-----CCcCH---H
Confidence 38888888888876 6899999997541 2345677777763 355542 011 23343 4
Q ss_pred HHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHhhcCCCEEEEcCCCCCC
Q 016682 240 KVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIGIGAGPFCS 287 (384)
Q Consensus 240 ~ll~rAkAleeAGAf~IvlE~Vp---~ela~~It~~l~IPtIGIGAG~~cD 287 (384)
++++-++++++.|...+. |.++ -+..++|.+++++|+. +|..+-
T Consensus 204 ~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ipIa---~~E~~~ 250 (368)
T cd03329 204 DALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIPIL---GTEHSR 250 (368)
T ss_pred HHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCCEE---ccCccc
Confidence 667778888887765443 3343 3566789999999964 455443
No 483
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=82.41 E-value=3 Score=42.80 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEecCCC---HHHHHHHHhhcCCCEEE
Q 016682 237 SAVKVVETALALQEVGCFSVVLECVP---PPVAAAATSALQIPTIG 279 (384)
Q Consensus 237 ~a~~ll~rAkAleeAGAf~IvlE~Vp---~ela~~It~~l~IPtIG 279 (384)
+.+..+++.++|++|||+.+=+-+.. ++..++|.+++++|+++
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVa 79 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVA 79 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 67889999999999999988887764 67778999999999993
No 484
>PRK13753 dihydropteroate synthase; Provisional
Probab=82.41 E-value=50 Score=33.02 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccC--CCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 107 HLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAK--RPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 107 iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~--~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
-.-+.|+|+|=+|--- ..|...+|+.+|-+..+.-|.+... ...|..|. | +++.+ ...+ +.|
T Consensus 33 ~m~~~GAdIIDIGgeS-----TrPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT----~--~~~va----~~al-~aG 96 (279)
T PRK13753 33 EMLRVGSDVVDVGPAA-----SHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDS----F--QPETQ----RYAL-KRG 96 (279)
T ss_pred HHHHCCCcEEEECCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEEC----C--CHHHH----HHHH-HcC
Confidence 3557899999888311 2455678888887764443333222 24477884 5 34443 2456 589
Q ss_pred CCEEEeCCCccchHHHHHHHHHcCCceee-ec----cCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCC
Q 016682 185 MDAIKLEGGSPSRITAARGIVEAGIAVMG-HV----GLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGC 253 (384)
Q Consensus 185 AdaVKLEgg~~e~~~~I~alv~aGIPV~g-Hi----GLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGA 253 (384)
|+.||==.| .......+.+.+.+.|||- |. |..|... ...| ..--.+-...+-++...++++|.
T Consensus 97 adiINDVsg-~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~--~~~~--~dv~~ev~~~l~~~i~~~~~~Gi 165 (279)
T PRK13753 97 VGYLNDIQG-FPDPALYPDIAEADCRLVVMHSAQRDGIATRTG--HLRP--EDALDEIVRFFEARVSALRRSGV 165 (279)
T ss_pred CCEEEeCCC-CCchHHHHHHHHcCCCEEEEecCCCCCCCCccc--CCCc--chHHHHHHHHHHHHHHHHHHcCC
Confidence 999985444 2233334455577888774 53 1111100 0001 00011233567778889999998
No 485
>PRK07360 FO synthase subunit 2; Reviewed
Probab=82.40 E-value=21 Score=36.37 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=72.2
Q ss_pred HHHHHHcCCCEEE-ecchhhhhhcc-CCCCcCCCHHHHHHHHHHHHcccCCCcEEE--eCCC----CCCcCCHHHHHHHH
Q 016682 105 AVHLDSAGIDICL-VGDSAAMVVHG-HDTTLPITLEEMLVHCRAVARGAKRPLLVG--DLPF----GTYESSTNQAVDTA 176 (384)
Q Consensus 105 A~iae~AGiD~Il-VGDSl~mv~lG-~~dT~~VtldeMl~h~raV~Rga~~~~vva--DmPf----gsY~~s~e~av~nA 176 (384)
|+.+.+.|+.-++ +| | +++. -.++.+...++.|++..+..-+.+ .+.. .+.+.+.++.
T Consensus 100 a~~a~~~G~~~i~l~~--------G~~p~~--~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~---- 165 (371)
T PRK07360 100 AAEAVKRGATEVCIQG--------GLHPAA--DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEV---- 165 (371)
T ss_pred HHHHHhCCCCEEEEcc--------CCCCCC--CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHH----
Confidence 4557788998885 54 3 2322 147888888888887543221221 0000 0011233444
Q ss_pred HHHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHH
Q 016682 177 VRILKEGGMDAIKLEGGS------------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (384)
Q Consensus 177 ~rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a 238 (384)
.+.++++|++.+. |.+. ++..+.++.+.+.|+++|. |+..=.|-|.++.
T Consensus 166 l~~LkeAGld~~~-~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s------------g~i~G~gEt~edr 232 (371)
T PRK07360 166 LKALKDAGLDSMP-GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS------------TMMYGHVETPEHR 232 (371)
T ss_pred HHHHHHcCCCcCC-CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee------------eEEeeCCCCHHHH
Confidence 3556789999995 5430 3456788888899999973 2221136676555
Q ss_pred HHHHHHHHHHH-HcCCcEEEec
Q 016682 239 VKVVETALALQ-EVGCFSVVLE 259 (384)
Q Consensus 239 ~~ll~rAkAle-eAGAf~IvlE 259 (384)
.+.+...+.++ +.|-|..|++
T Consensus 233 v~~l~~lr~l~~~~~g~~~fIp 254 (371)
T PRK07360 233 IDHLLILREIQQETGGITEFVP 254 (371)
T ss_pred HHHHHHHHHhchhhCCeeEEEe
Confidence 55555555554 3555556654
No 486
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.30 E-value=47 Score=33.90 Aligned_cols=113 Identities=11% Similarity=-0.012 Sum_probs=66.7
Q ss_pred CcEEEEecCChHHHHHHHHcCCCEEEecchhhh----hhccCCCCcCCCHHHHHH----HHHHHHcccCCCcEEEeCCCC
Q 016682 92 EPITMVTAYDYPSAVHLDSAGIDICLVGDSAAM----VVHGHDTTLPITLEEMLV----HCRAVARGAKRPLLVGDLPFG 163 (384)
Q Consensus 92 ~~I~mlTAyD~~sA~iae~AGiD~IlVGDSl~m----v~lG~~dT~~VtldeMl~----h~raV~Rga~~~~vvaDmPfg 163 (384)
..|+..+-...-..+.+.++|+|.|-+-.+++- ..+| .|.+|.+. .++..++ .... |...+.-
T Consensus 64 ~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~-~G~~-v~~~~ed- 134 (363)
T TIGR02090 64 AEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKE-HGLI-VEFSAED- 134 (363)
T ss_pred cEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHH-cCCE-EEEEEee-
Confidence 455555555566667778899999855333322 1233 34444443 3332221 2222 3344443
Q ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc-----cchHHHHHHHHHc-CCceeee
Q 016682 164 TYESSTNQAVDTAVRILKEGGMDAIKLEGGS-----PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 164 sY~~s~e~av~nA~rl~keaGAdaVKLEgg~-----~e~~~~I~alv~a-GIPV~gH 214 (384)
++..+++..++.+.++. +.|++.|.|-|-. .++.+.|+.+.+. ++|+--|
T Consensus 135 a~r~~~~~l~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H 190 (363)
T TIGR02090 135 ATRTDIDFLIKVFKRAE-EAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVH 190 (363)
T ss_pred cCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEE
Confidence 23467888888777766 7999999998842 5667777777753 5666555
No 487
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=82.29 E-value=60 Score=32.88 Aligned_cols=167 Identities=14% Similarity=0.201 Sum_probs=90.7
Q ss_pred CcEEEEecCC--hHHHHHHHHcCCCEEEecchhhh-hhccCCCC-----------------cCCCHHHHHHHHHHHHccc
Q 016682 92 EPITMVTAYD--YPSAVHLDSAGIDICLVGDSAAM-VVHGHDTT-----------------LPITLEEMLVHCRAVARGA 151 (384)
Q Consensus 92 ~~I~mlTAyD--~~sA~iae~AGiD~IlVGDSl~m-v~lG~~dT-----------------~~VtldeMl~h~raV~Rga 151 (384)
.||.+-..+| ....+.+.++|+..|.+|. +.. -..|.+.- ....+|..+.+.+. . -.
T Consensus 57 NPi~lAsG~~~~~~~~~~~~~~G~Gavv~kT-vt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~-~-~~ 133 (335)
T TIGR01036 57 NPLGLAAGFDKDGEAIDALGAMGFGFLEIGT-VTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKR-A-RY 133 (335)
T ss_pred CCcEeCCccCCCHHHHHHHHhcCCCEEEeCC-cCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhh-c-cC
Confidence 3665555555 3355566678999998873 222 12333210 03456777766554 1 12
Q ss_pred CCCcEEEeCCC---CCCcCCHHHHHHHHHHHHHHhCCCEEEeC-------C----Cc-cchHHHHHHHHHc--------C
Q 016682 152 KRPLLVGDLPF---GTYESSTNQAVDTAVRILKEGGMDAIKLE-------G----GS-PSRITAARGIVEA--------G 208 (384)
Q Consensus 152 ~~~~vvaDmPf---gsY~~s~e~av~nA~rl~keaGAdaVKLE-------g----g~-~e~~~~I~alv~a--------G 208 (384)
+.| |++.+.- .....+.++-.+.+.++- + .||++-|. | +. +...+.++++++. .
T Consensus 134 ~~~-i~vsi~~~~~~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~ 210 (335)
T TIGR01036 134 KGP-IGINIGKNKDTPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHR 210 (335)
T ss_pred CCc-EEEEEeCCCCCCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccC
Confidence 234 4444421 112235677766555543 2 48887662 1 10 2233444554432 2
Q ss_pred CceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecC-CC-------------------------
Q 016682 209 IAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLEC-VP------------------------- 262 (384)
Q Consensus 209 IPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~-Vp------------------------- 262 (384)
+||+.= |+|.. + ..++.+-|++++++||++|++-. +.
T Consensus 211 ~Pv~vK--LsP~~------------~---~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~ 273 (335)
T TIGR01036 211 VPVLVK--IAPDL------------T---ESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDK 273 (335)
T ss_pred CceEEE--eCCCC------------C---HHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHH
Confidence 888743 33321 1 13566678888999999999632 10
Q ss_pred -HHHHHHHHhhc--CCCEEEEc
Q 016682 263 -PPVAAAATSAL--QIPTIGIG 281 (384)
Q Consensus 263 -~ela~~It~~l--~IPtIGIG 281 (384)
-+.++.+.+.+ ++|+||.|
T Consensus 274 al~~v~~~~~~~~~~ipiig~G 295 (335)
T TIGR01036 274 STEIIRRLYAELQGRLPIIGVG 295 (335)
T ss_pred HHHHHHHHHHHhCCCCCEEEEC
Confidence 14666777777 58988876
No 488
>PTZ00413 lipoate synthase; Provisional
Probab=82.17 E-value=44 Score=35.18 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred CHHHHHHhhhCCCcEEEE---------ecCChH------HHHHH-------HHcCCCEEEecchhhhhhccCCCCcCCCH
Q 016682 80 TLTHLRQKHKNGEPITMV---------TAYDYP------SAVHL-------DSAGIDICLVGDSAAMVVHGHDTTLPITL 137 (384)
Q Consensus 80 t~~~lr~~k~~g~~I~ml---------TAyD~~------sA~ia-------e~AGiD~IlVGDSl~mv~lG~~dT~~Vtl 137 (384)
+...++++.++.+--|+. -||.-- +|-++ +.+.|-.+- .|.+ ..+++.
T Consensus 110 ~~~~~~~~~~~~~L~TVCeea~CPNi~EC~~~~~~~~~~tATfmilG~~CTr~C~FCaqs---------tg~~-p~~lD~ 179 (398)
T PTZ00413 110 RFNRIRRSMREKKLHTVCEEAKCPNIGECWGGGDEEGTATATIMVMGDHCTRGCRFCSVK---------TSRK-PPPLDP 179 (398)
T ss_pred hHHHHHHHHHhCCCceeeCCCCCCChHHHhCCCCCCCCceeEeeecCCCCCCCCCCCCCC---------CCCC-CCCCCH
Confidence 356666666554444432 378776 66544 344443332 2442 378899
Q ss_pred HHHHHHHHHHHc-ccCCCcEE-Ee---CCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---cchHHHHHHHHHcCC
Q 016682 138 EEMLVHCRAVAR-GAKRPLLV-GD---LPFGTYESSTNQAVDTAVRILKEGGMDAIKLEGGS---PSRITAARGIVEAGI 209 (384)
Q Consensus 138 deMl~h~raV~R-ga~~~~vv-aD---mPfgsY~~s~e~av~nA~rl~keaGAdaVKLEgg~---~e~~~~I~alv~aGI 209 (384)
+|....+++|.+ |+...+|. +| +|-++. +-+..+++.|++. ...+++|--. .-..+.++.|.++|.
T Consensus 180 eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga-----~~~a~~I~~Ir~~-~p~~~IevligDf~g~~e~l~~L~eAG~ 253 (398)
T PTZ00413 180 NEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGA-----SHVARCVELIKES-NPELLLEALVGDFHGDLKSVEKLANSPL 253 (398)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhH-----HHHHHHHHHHHcc-CCCCeEEEcCCccccCHHHHHHHHhcCC
Confidence 999999999865 45433222 43 443333 3444456677642 2356677431 113678999999999
Q ss_pred ceeeeccCCcccccccCCcccc--CCCHHHHHHHHHHHHHHHHcCC---cEEEecCC--C-HHHHHHHHh
Q 016682 210 AVMGHVGLTPQAISVLGGFRPQ--GKNVTSAVKVVETALALQEVGC---FSVVLECV--P-PPVAAAATS 271 (384)
Q Consensus 210 PV~gHiGLtPQ~~~~lgGfrvq--Grt~~~a~~ll~rAkAleeAGA---f~IvlE~V--p-~ela~~It~ 271 (384)
.|+.| +=.++-.+-. .|. +-+-++..++|++|+.+-.-|. ..+.+ ++ . +|+.+.+-+
T Consensus 254 dvynH---NLETv~rLyp-~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIV-GLGET~eEvie~m~d 318 (398)
T PTZ00413 254 SVYAH---NIECVERITP-YVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIML-GLGETEEEVRQTLRD 318 (398)
T ss_pred CEEec---ccccCHhHHH-HHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEe-cCCCCHHHHHHHHHH
Confidence 99998 3222222211 122 2356777888888886533453 23333 45 2 455555443
No 489
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=82.12 E-value=25 Score=37.83 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCC---------CcEEEeCCCCCCcCCHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKR---------PLLVGDLPFGTYESSTNQAVDT 175 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~---------~~vvaDmPfgsY~~s~e~av~n 175 (384)
|+.++++|+|.|=+|. |..-+++...++++.+..+. +.+. ++.....+-++.
T Consensus 112 a~~L~~~GVd~IEvG~-------------Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~------a~~R~~~~dId~ 172 (503)
T PLN03228 112 ARQLAKLRVDIMEVGF-------------PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVIC------GIARCKKRDIEA 172 (503)
T ss_pred HHHHHHcCCCEEEEeC-------------CCCCHHHHHHHHHHHHhcccccccccccceEEe------eecccCHhhHHH
Q ss_pred HHHHHHHhCCCEEEeCCCc-----------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHH
Q 016682 176 AVRILKEGGMDAIKLEGGS-----------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSA 238 (384)
Q Consensus 176 A~rl~keaGAdaVKLEgg~-----------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a 238 (384)
|.+.++.+|++.|.|--.. +...+.|+.+.+.|..++ -|-.---+..+.
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v--------------~f~~EDa~Rtd~ 238 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDI--------------QFGCEDGGRSDK 238 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE--------------EeccccccccCH
Q ss_pred HHHHHHHHHHHHcCCcEEEec-----CCC---HHHHHHHHhhc----CCCE
Q 016682 239 VKVVETALALQEVGCFSVVLE-----CVP---PPVAAAATSAL----QIPT 277 (384)
Q Consensus 239 ~~ll~rAkAleeAGAf~IvlE-----~Vp---~ela~~It~~l----~IPt 277 (384)
+-+++-++++.++||+.|.+. +.| .++.+.+.+.+ ++|+
T Consensus 239 efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I 289 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVF 289 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCcee
No 490
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=82.04 E-value=29 Score=34.89 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=72.2
Q ss_pred HHHHcCCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCC--------CCCcCCHHHHHHHHH
Q 016682 107 HLDSAGIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPF--------GTYESSTNQAVDTAV 177 (384)
Q Consensus 107 iae~AGiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPf--------gsY~~s~e~av~nA~ 177 (384)
.+.+.|+.-| ++| |... ...++.++..++.|.+..+.--+.+-.|. .+. .+.++.
T Consensus 81 ~~~~~G~~~i~l~g--------G~~p--~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~-~~~e~l----- 144 (343)
T TIGR03551 81 EAWKAGATEVCIQG--------GIHP--DLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGL-SVEEAL----- 144 (343)
T ss_pred HHHHCCCCEEEEEe--------CCCC--CCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCC-CHHHHH-----
Confidence 3566788887 464 2111 24677888888888775432213232110 111 233333
Q ss_pred HHHHHhCCCEEEeCCCc------------------cchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHH
Q 016682 178 RILKEGGMDAIKLEGGS------------------PSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAV 239 (384)
Q Consensus 178 rl~keaGAdaVKLEgg~------------------~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~ 239 (384)
+-++++|++.+. +.+. ++..+.|+.+.++||+|+.- .+=| .|-|.++..
T Consensus 145 ~~LkeAGl~~i~-~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~---------~i~G---~~Et~ed~~ 211 (343)
T TIGR03551 145 KRLKEAGLDSMP-GTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTAT---------IMYG---HVETPEHWV 211 (343)
T ss_pred HHHHHhCccccc-CcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccce---------EEEe---cCCCHHHHH
Confidence 556789999886 3320 23467888888999998742 1111 345666777
Q ss_pred HHHHHHHHHH-HcCCcEEEec
Q 016682 240 KVVETALALQ-EVGCFSVVLE 259 (384)
Q Consensus 240 ~ll~rAkAle-eAGAf~IvlE 259 (384)
+.+...+.++ +.|-|..+++
T Consensus 212 ~~l~~lr~l~~~~~~~~~~iP 232 (343)
T TIGR03551 212 DHLLILREIQEETGGFTEFVP 232 (343)
T ss_pred HHHHHHHHhhHHhCCeeEEEe
Confidence 7777777776 4566666654
No 491
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=82.02 E-value=58 Score=32.54 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=81.8
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHH----HHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHH
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHC----RAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRIL 180 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~----raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~ 180 (384)
|.-.-+.|+|+|=+|--- ..|...+|+-+|-+..+ +++++..+ .+|+.|. | +++.+ + +.+
T Consensus 44 a~~~~~~GAdIIDIGgeS-----TrPg~~~v~~eeE~~Rv~pvI~~l~~~~~-~~ISIDT----~--~~~va-~---~AL 107 (282)
T PRK11613 44 ANLMINAGATIIDVGGES-----TRPGAAEVSVEEELDRVIPVVEAIAQRFE-VWISVDT----S--KPEVI-R---ESA 107 (282)
T ss_pred HHHHHHCCCcEEEECCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEEC----C--CHHHH-H---HHH
Confidence 334567899999887211 13445678888776554 44443333 3477884 4 33333 3 345
Q ss_pred HHhCCCEEEeCCCccchHHHHHHHHHcCCceee-eccCCcccccccCCccccCCC-HHHH-HHHHHHHHHHHHcCCc---
Q 016682 181 KEGGMDAIKLEGGSPSRITAARGIVEAGIAVMG-HVGLTPQAISVLGGFRPQGKN-VTSA-VKVVETALALQEVGCF--- 254 (384)
Q Consensus 181 keaGAdaVKLEgg~~e~~~~I~alv~aGIPV~g-HiGLtPQ~~~~lgGfrvqGrt-~~~a-~~ll~rAkAleeAGAf--- 254 (384)
+.||+.||==.|.. -.+.++.+.+.|.||+. |..=+|++......| .+ .++. ..+-++...+.++|..
T Consensus 108 -~~GadiINDI~g~~-d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y----~dv~~~v~~~l~~~i~~a~~~GI~~~~ 181 (282)
T PRK11613 108 -KAGAHIINDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKY----DDVFAEVNRYFIEQIARCEAAGIAKEK 181 (282)
T ss_pred -HcCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCc----ccHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 46999986443311 11234445677888764 532245442211111 11 1122 4456677789999994
Q ss_pred EEEecCCC--------HHHHHHHH--hhcCCCEEEEcCC
Q 016682 255 SVVLECVP--------PPVAAAAT--SALQIPTIGIGAG 283 (384)
Q Consensus 255 ~IvlE~Vp--------~ela~~It--~~l~IPtIGIGAG 283 (384)
.|+=+++. -++.+.+. +.++.|+. +|..
T Consensus 182 IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pil-vg~S 219 (282)
T PRK11613 182 LLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPLL-VGMS 219 (282)
T ss_pred EEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEE-EEec
Confidence 44434442 23333332 34678964 4443
No 492
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=81.82 E-value=8.4 Score=38.04 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=53.8
Q ss_pred HHHHHhCCCEEEeCCC-----ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcC
Q 016682 178 RILKEGGMDAIKLEGG-----SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVG 252 (384)
Q Consensus 178 rl~keaGAdaVKLEgg-----~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAG 252 (384)
+++..+|-|.|-|.-. .++....|+++...|++.+- |+.+.+. ...+...++|
T Consensus 33 E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lV---------------Rvp~~~~-------~~i~r~LD~G 90 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVI---------------RPVEGSK-------PLIKQVLDIG 90 (267)
T ss_pred HHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEE---------------ECCCCCH-------HHHHHHhCCC
Confidence 4555677777766432 13444556666666655442 3333332 2345577999
Q ss_pred CcEEEecCCC-HHHHHHHHhhcCCCEEEE
Q 016682 253 CFSVVLECVP-PPVAAAATSALQIPTIGI 280 (384)
Q Consensus 253 Af~IvlE~Vp-~ela~~It~~l~IPtIGI 280 (384)
|.+|+++.|. .|.++.+.+...=|-.|.
T Consensus 91 A~GIivP~V~saeeA~~~V~a~rYpP~G~ 119 (267)
T PRK10128 91 AQTLLIPMVDTAEQARQVVSATRYPPYGE 119 (267)
T ss_pred CCeeEecCcCCHHHHHHHHHhcCCCCCCC
Confidence 9999999994 899999999999887665
No 493
>PRK15108 biotin synthase; Provisional
Probab=81.79 E-value=24 Score=35.78 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC
Q 016682 105 AVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG 184 (384)
Q Consensus 105 A~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG 184 (384)
|+.+.+.|++-++.|-+ | .+-...+++.+....+.+++ .... +++- . ++ .+.++. +.++++|
T Consensus 85 a~~~~~~G~~~i~i~~~------g-~~p~~~~~e~i~~~i~~ik~-~~i~-v~~s--~-G~-ls~e~l-----~~LkeAG 146 (345)
T PRK15108 85 ARKAKAAGSTRFCMGAA------W-KNPHERDMPYLEQMVQGVKA-MGLE-TCMT--L-GT-LSESQA-----QRLANAG 146 (345)
T ss_pred HHHHHHcCCCEEEEEec------C-CCCCcchHHHHHHHHHHHHh-CCCE-EEEe--C-Cc-CCHHHH-----HHHHHcC
Confidence 34466788888754311 1 12224567888888887764 3322 2222 3 34 565555 4566899
Q ss_pred CCEEEe--CCC------------ccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHH
Q 016682 185 MDAIKL--EGG------------SPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQ 249 (384)
Q Consensus 185 AdaVKL--Egg------------~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAle 249 (384)
+|.+++ |.. .++..+.++.+.++|+++|.| .+=| .|-|.++..+.+...+.++
T Consensus 147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg---------~i~G---lgEt~ed~v~~~~~l~~l~ 213 (345)
T PRK15108 147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG---------GIVG---LGETVKDRAGLLLQLANLP 213 (345)
T ss_pred CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE---------EEEe---CCCCHHHHHHHHHHHHhcc
Confidence 997766 221 156778888888999999865 2212 3677766666666666664
No 494
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=81.77 E-value=52 Score=31.98 Aligned_cols=149 Identities=28% Similarity=0.333 Sum_probs=82.1
Q ss_pred HHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhCC
Q 016682 106 VHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGGM 185 (384)
Q Consensus 106 ~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaGA 185 (384)
..+.+.|.|+|+||-|. .+|-+.|..-+++|++ .+.|.+. .|. + +++. . -+|
T Consensus 26 ~~~~~~gtdai~vGGS~-----------~vt~~~~~~~v~~ik~-~~lPvil--fp~-~----~~~i-------~--~~a 77 (232)
T PRK04169 26 EAICESGTDAIIVGGSD-----------GVTEENVDELVKAIKE-YDLPVIL--FPG-N----IEGI-------S--PGA 77 (232)
T ss_pred HHHHhcCCCEEEEcCCC-----------ccchHHHHHHHHHHhc-CCCCEEE--eCC-C----cccc-------C--cCC
Confidence 34667899999999665 5677888888899998 8889666 463 2 2222 2 247
Q ss_pred CEEEeC----CCc-cc----hHHHHHHHHHcCCce--eeeccCCccccccc-CCccccCCCHHHHHHHHHHHHHHHHcCC
Q 016682 186 DAIKLE----GGS-PS----RITAARGIVEAGIAV--MGHVGLTPQAISVL-GGFRPQGKNVTSAVKVVETALALQEVGC 253 (384)
Q Consensus 186 daVKLE----gg~-~e----~~~~I~alv~aGIPV--~gHiGLtPQ~~~~l-gGfrvqGrt~~~a~~ll~rAkAleeAGA 253 (384)
|++-+= +.. .+ +...+..+...|+-+ +|=|-++|-..... +.=+..-++.++ -+.--+.|=+--|-
T Consensus 78 Da~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~--~~~~~~lA~~~~g~ 155 (232)
T PRK04169 78 DAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPD--IAAYAALAAEYLGM 155 (232)
T ss_pred CEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHH--HHHHHHHHHHHcCC
Confidence 877653 211 11 233333332233321 23333444322211 111111122222 22222333344577
Q ss_pred cEEEecC-------CCHHHHHHHHhhcCC-CEEEEcCCCC
Q 016682 254 FSVVLEC-------VPPPVAAAATSALQI-PTIGIGAGPF 285 (384)
Q Consensus 254 f~IvlE~-------Vp~ela~~It~~l~I-PtIGIGAG~~ 285 (384)
-.+++|. ++.++++.+.+.+++ |++ +|.|=.
T Consensus 156 ~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvi-vGGGIr 194 (232)
T PRK04169 156 PIVYLEYGGGAGDPVPPEMVKAVKKALDITPLI-YGGGIR 194 (232)
T ss_pred CeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEE-EECCCC
Confidence 7888882 237899999999998 987 566644
No 495
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.74 E-value=24 Score=35.25 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=69.1
Q ss_pred CCcEEEE--ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE--EeCCC----
Q 016682 91 GEPITMV--TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV--GDLPF---- 162 (384)
Q Consensus 91 g~~I~ml--TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv--aDmPf---- 162 (384)
+-|+.+= -+.|+...+-+=++||.-|.+ |+...+++|-+..|+.|++-+...=+. +-+..
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~~GftSVM~------------DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~ 141 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIRNGFTSVMI------------DGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGT 141 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEEE------------eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCc
Confidence 3455443 466666666666777777764 345679999999999887665311011 11111
Q ss_pred --C--------CCcCCHHHHHHHHHHHHHHhCCCEEEeCCCc---------cchHHHHHHHHHc-CCceeee
Q 016682 163 --G--------TYESSTNQAVDTAVRILKEGGMDAIKLEGGS---------PSRITAARGIVEA-GIAVMGH 214 (384)
Q Consensus 163 --g--------sY~~s~e~av~nA~rl~keaGAdaVKLEgg~---------~e~~~~I~alv~a-GIPV~gH 214 (384)
+ -| .+|+++ .+|++++|+|++=+-=|+ .-..++++.|.+. +||.+-|
T Consensus 142 e~~~~~~~~~~~~-T~pe~a----~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlH 208 (284)
T PRK12857 142 EDDITVDEREAAM-TDPEEA----RRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLH 208 (284)
T ss_pred cCCCCcccchhhc-CCHHHH----HHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEe
Confidence 0 16 688888 568999999998876442 2345666666654 8999988
No 496
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=81.56 E-value=45 Score=30.96 Aligned_cols=143 Identities=23% Similarity=0.297 Sum_probs=76.2
Q ss_pred CHHHHHHhhhC-CCcEEEE-ecCChHHHHHHHHcCCCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE
Q 016682 80 TLTHLRQKHKN-GEPITMV-TAYDYPSAVHLDSAGIDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV 157 (384)
Q Consensus 80 t~~~lr~~k~~-g~~I~ml-TAyD~~sA~iae~AGiD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv 157 (384)
....+++.++. +-|+.+- +.-|...|.-+-++|+|.+++|+++-. | .+.+....+.+ +.....+.
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~------d-----p~~~~~i~~~~--g~~~i~~s 127 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK------N-----PELVKELLKEY--GGERIVVG 127 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh------C-----hHHHHHHHHHc--CCceEEEE
Confidence 34445544432 2344332 557777787777899999999977621 1 22222222221 11223344
Q ss_pred EeCCCCC------CcCCHHHHHHHHHHHHHHhCCCEEEeCCCc------cchHHHHHHHHHc-CCceeeeccCCcccccc
Q 016682 158 GDLPFGT------YESSTNQAVDTAVRILKEGGMDAIKLEGGS------PSRITAARGIVEA-GIAVMGHVGLTPQAISV 224 (384)
Q Consensus 158 aDmPfgs------Y~~s~e~av~nA~rl~keaGAdaVKLEgg~------~e~~~~I~alv~a-GIPV~gHiGLtPQ~~~~ 224 (384)
.|++-+. ...+..+.++.+.+ +++.|++.+-+-+=. ....+.|+.+++. .|||+..
T Consensus 128 id~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~---------- 196 (234)
T cd04732 128 LDAKDGKVATKGWLETSEVSLEELAKR-FEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIAS---------- 196 (234)
T ss_pred EEeeCCEEEECCCeeecCCCHHHHHHH-HHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEe----------
Confidence 6765321 11112223333334 457899988765310 1235778888764 8999853
Q ss_pred cCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEe
Q 016682 225 LGGFRPQGKNVTSAVKVVETALALQEVGCFSVVL 258 (384)
Q Consensus 225 lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~Ivl 258 (384)
||. ++. ++.+.+.+.||+++.+
T Consensus 197 -GGi----~~~-------~di~~~~~~Ga~gv~v 218 (234)
T cd04732 197 -GGV----SSL-------DDIKALKELGVAGVIV 218 (234)
T ss_pred -cCC----CCH-------HHHHHHHHCCCCEEEE
Confidence 443 232 2344445569999875
No 497
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=81.50 E-value=41 Score=31.48 Aligned_cols=157 Identities=21% Similarity=0.201 Sum_probs=79.2
Q ss_pred HHHHHcC--CCEEEecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHh
Q 016682 106 VHLDSAG--IDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEG 183 (384)
Q Consensus 106 ~iae~AG--iD~IlVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vvaDmPfgsY~~s~e~av~nA~rl~kea 183 (384)
+++++.+ +|++=+|=.+ +..+|. ..++.+++.. ++++.|+=++.-..+.+..+ +.+.+.
T Consensus 15 ~~~~~~~~~v~~iKig~~l-~~~~G~------------~~v~~l~~~~--~~v~lD~K~~Dig~t~~~~~----~~~~~~ 75 (213)
T TIGR01740 15 DLADSLGPEIEVIKVGIDL-LLDGGD------------KIIDELAKLN--KLIFLDLKFADIPNTVKLQY----ESKIKQ 75 (213)
T ss_pred HHHHhcCCcCcEEEECHHH-HHhcCH------------HHHHHHHHcC--CCEEEEEeecchHHHHHHHH----HHHHhc
Confidence 3566666 6666566433 122222 2334444432 35889987643322333333 333468
Q ss_pred CCCEEEeCCCc-cc-hHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCC
Q 016682 184 GMDAIKLEGGS-PS-RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECV 261 (384)
Q Consensus 184 GAdaVKLEgg~-~e-~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~V 261 (384)
|||+|-+-+.. .+ +.+.++.+.+.|--|.+=.-||-..... . +.+ -.+.+++.++..+++|.++++ |-
T Consensus 76 gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~-----~-~~~--~~~~v~~~a~~~~~~g~~g~v--~~ 145 (213)
T TIGR01740 76 GADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLD-----Y-GED--TMEKVLEYAKEAKAFGLDGPV--CS 145 (213)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhh-----h-CcC--HHHHHHHHHHHhhhcCCeEEE--eC
Confidence 99998876421 22 2333444334453333322233211111 1 112 235788889999999999887 55
Q ss_pred CHHHHHHHHhhcC-CCEE--EEcCCC-CCCchhhh
Q 016682 262 PPPVAAAATSALQ-IPTI--GIGAGP-FCSGQVLV 292 (384)
Q Consensus 262 p~ela~~It~~l~-IPtI--GIGAG~-~cDGQvLV 292 (384)
|. .++.|.+..+ .+++ |||+-. ..++|-.|
T Consensus 146 ~~-~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~ 179 (213)
T TIGR01740 146 AE-EAKEIRKFTGDFLILTPGIRLQSKGADDQQRV 179 (213)
T ss_pred HH-HHHHHHHhcCCceEEeCCcCCCCCCcCCcccc
Confidence 54 3355554433 2333 777543 34555544
No 498
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=81.49 E-value=12 Score=36.40 Aligned_cols=131 Identities=23% Similarity=0.185 Sum_probs=73.1
Q ss_pred cEEEeCCCCCCcCCHHHHHHHHHHHHHHhCCCEEEeCC--CccchHHHHHHHHHcCCceeeeccCCcccccccCCccccC
Q 016682 155 LLVGDLPFGTYESSTNQAVDTAVRILKEGGMDAIKLEG--GSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQG 232 (384)
Q Consensus 155 ~vvaDmPfgsY~~s~e~av~nA~rl~keaGAdaVKLEg--g~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqG 232 (384)
.|+.|+=|+.- -.+++.+.+-.-+.|+|+|.+-+ |.+.+.+..+++...|--|.+=.=||-..... ..-+|
T Consensus 64 ~VflDlK~~DI----pnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~---~~~~~ 136 (240)
T COG0284 64 KVFLDLKLADI----PNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQ---LAELG 136 (240)
T ss_pred ceEEeeecccc----hHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhh---hhhcc
Confidence 58999988443 44555555555578999999975 42333444444444441233322222211111 11123
Q ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEecCCCHHHHHHHHh-hcCCCEEEEcCCCCCCchhhh
Q 016682 233 KNVTSAVKVVETALALQEVGCFSVVLECVPPPVAAAATS-ALQIPTIGIGAGPFCSGQVLV 292 (384)
Q Consensus 233 rt~~~a~~ll~rAkAleeAGAf~IvlE~Vp~ela~~It~-~l~IPtIGIGAG~~cDGQvLV 292 (384)
-...-.+.+++.++.-.++|.+++|.=+-..+.+++++. ...|=|=|||+|..-+.|--|
T Consensus 137 ~~~~~~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~ 197 (240)
T COG0284 137 INSSLEEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGAGSQGGDQGRV 197 (240)
T ss_pred ccchHHHHHHHHHHHhccCCceEEEcCHHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccc
Confidence 233445788889999999999888754433444444443 122223388887666666655
No 499
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=81.47 E-value=48 Score=31.16 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=85.2
Q ss_pred CCCEE-EecchhhhhhccCCCCcCCCHHHHHHHHHHHHcccCCCcEE-EeCCC--CCCcCCHHHHHHHHHHHHHHhCCCE
Q 016682 112 GIDIC-LVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKRPLLV-GDLPF--GTYESSTNQAVDTAVRILKEGGMDA 187 (384)
Q Consensus 112 GiD~I-lVGDSl~mv~lG~~dT~~VtldeMl~h~raV~Rga~~~~vv-aDmPf--gsY~~s~e~av~nA~rl~keaGAda 187 (384)
|+|+| +-=|.+.. ...+++....+.+++-.+.|+|. .-.+. |.|..+.++-++--.+.+ +.|++.
T Consensus 24 ~aD~vElR~D~~~~----------~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~-~~~~d~ 92 (225)
T cd00502 24 GADAVELRVDLLED----------PSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEAL-KLGPDY 92 (225)
T ss_pred CCCEEEEEEeeccc----------cchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHH-HHCCCE
Confidence 89998 54454311 11556666777777766667555 22222 445556665555444555 578999
Q ss_pred EEeCCCccchHHHHHHHHHcCCceeeeccCCcccccccCCccccCCCHHHHHHHHHHHHHHHHcCCcEEEecCCC---HH
Q 016682 188 IKLEGGSPSRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECVP---PP 264 (384)
Q Consensus 188 VKLEgg~~e~~~~I~alv~aGIPV~gHiGLtPQ~~~~lgGfrvqGrt~~~a~~ll~rAkAleeAGAf~IvlE~Vp---~e 264 (384)
|=+|=..+...+.++.+.+.|..|+++ .|. | .+|. ...++.+..+.+++.|||.+=+=+.| .+
T Consensus 93 vDiEl~~~~~~~~~~~~~~~~~kiI~S-------~H~---f---~~tp-~~~~l~~~~~~~~~~gadivKla~~~~~~~D 158 (225)
T cd00502 93 VDIELDSALLEELINSRKKGNTKIIGS-------YHD---F---SGTP-SDEELVSRLEKMAALGADIVKIAVMANSIED 158 (225)
T ss_pred EEEEecchHHHHHHHHHHhCCCEEEEE-------ecc---C---CCCc-CHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 999854222445555555679999876 111 1 1222 12344444455556699988776654 23
Q ss_pred HHH--HHHhhc----CCCEEEEcCCCC
Q 016682 265 VAA--AATSAL----QIPTIGIGAGPF 285 (384)
Q Consensus 265 la~--~It~~l----~IPtIGIGAG~~ 285 (384)
+.+ .++... ++|+|.|+=|..
T Consensus 159 ~~~ll~~~~~~~~~~~~p~i~~~MG~~ 185 (225)
T cd00502 159 NLRLLKFTRQVKNLYDIPLIAINMGEL 185 (225)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 222 222222 469999998875
No 500
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.20 E-value=71 Score=32.99 Aligned_cols=227 Identities=10% Similarity=0.055 Sum_probs=131.3
Q ss_pred HHHHHhhhCCCcEEEEecCChHHHH----HHHHcCCCEEEecch-hhhhhccC------CCCc-CCCHHHHHHHHHHHHc
Q 016682 82 THLRQKHKNGEPITMVTAYDYPSAV----HLDSAGIDICLVGDS-AAMVVHGH------DTTL-PITLEEMLVHCRAVAR 149 (384)
Q Consensus 82 ~~lr~~k~~g~~I~mlTAyD~~sA~----iae~AGiD~IlVGDS-l~mv~lG~------~dT~-~VtldeMl~h~raV~R 149 (384)
.-|+..++++--|-..+||+..+++ .+|+.+.++|+--.. ...-..|. +++. .+.++.+...++..++
T Consensus 3 ~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 82 (340)
T cd00453 3 KVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 82 (340)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHH
Confidence 3466677788899999999999994 567779999984433 33333441 2222 2236778888888888
Q ss_pred ccCCCcEEEeCCCCCCcCCHHHHHHHHHHHHHHhC-----------CCEEEeCCCc---cchHH----HHHHHHHcCCce
Q 016682 150 GAKRPLLVGDLPFGTYESSTNQAVDTAVRILKEGG-----------MDAIKLEGGS---PSRIT----AARGIVEAGIAV 211 (384)
Q Consensus 150 ga~~~~vvaDmPfgsY~~s~e~av~nA~rl~keaG-----------AdaVKLEgg~---~e~~~----~I~alv~aGIPV 211 (384)
.++.| |+.-|.-+. ..+.+. +.+.+ ++| .+.|.+-|.. +|-.+ .++.+...||.|
T Consensus 83 ~~~VP-V~lHLDH~~-~~~~e~----i~~ai-~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~V 155 (340)
T cd00453 83 HYGVP-VILHTDHCA-KKLLPW----IDGLL-DAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL 155 (340)
T ss_pred HCCCC-EEEEcCCCC-CCCHHH----HHHHH-HcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 88877 777777643 124433 35777 689 9999997763 33333 344444689999
Q ss_pred eeeccCCcccccccCCc----cccCCCHHHHHHHHHHHHHHHHcC----CcEEE----------e---cCCCHHHHHHHH
Q 016682 212 MGHVGLTPQAISVLGGF----RPQGKNVTSAVKVVETALALQEVG----CFSVV----------L---ECVPPPVAAAAT 270 (384)
Q Consensus 212 ~gHiGLtPQ~~~~lgGf----rvqGrt~~~a~~ll~rAkAleeAG----Af~Iv----------l---E~Vp~ela~~It 270 (384)
=+=||-+.....-.... ...=.+.+++.+.+ ++-| +|+|= - +.+.-++.+.|.
T Consensus 156 EaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv------~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~ 229 (340)
T cd00453 156 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAY------TELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQ 229 (340)
T ss_pred EEEEEecCCccCCcccccccccccCCCHHHHHHHH------HHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHH
Confidence 77777655221110000 00011345555544 3456 55442 2 224578899999
Q ss_pred hhc---------CCCEEEEcCCCCCCchhhhHhhhhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHH
Q 016682 271 SAL---------QIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKALLEYKEE 333 (384)
Q Consensus 271 ~~l---------~IPtIGIGAG~~cDGQvLV~~DlLG~~~~P~~~~~~PkFvk~y~~~~~~~~~A~~~y~~e 333 (384)
+.+ ++|+.-=|+..-.|=|+- -.=-.|.. | +.-+-++.....+++++|..+
T Consensus 230 ~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~-~ai~~Gi~----------K-iNi~Te~~~A~~~~~~~~~~~ 289 (340)
T cd00453 230 EYVSKKHNLPHNSLNFVFHGGSGSTAQEIK-DSVSYGVV----------K-MNIDTDTQWATWEGVLNYYKA 289 (340)
T ss_pred HHHHhhcccCCCCCceEEeCCCCCCHHHHH-HHHHcCCe----------E-EEcccHHHHHHHHHHHHHHHh
Confidence 988 788654443333332221 11011222 1 223345566667777777754
Done!