BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016685
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 63 KKGTTLF-----GYGYDFRQSNRIDKLMEGLKVKLETAYKASGNRKVTLITHSMGGLLVM 117
++G T++ G+ D + R ++L+ +K T A+G KV L+ HS GGL
Sbjct: 39 QRGATVYVANLSGFQSDDGPNGRGEQLLAYVK----TVLAATGATKVNLVGHSQGGLTSR 94
Query: 118 CFMSLHKDVFSKFVNKWITIASPFQGA 144
++ D+ + TI +P +G+
Sbjct: 95 YVAAVAPDLVASVT----TIGTPHRGS 117
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 63 KKGTTLF-----GYGYDFRQSNRIDKLMEGLKVKLETAYKASGNRKVTLITHSMGGLLVM 117
++G T++ G+ D + R ++L+ +K T A+G KV L+ HS GGL
Sbjct: 39 QRGATVYVANLSGFQSDDGPNGRGEQLLAYVK----TVLAATGATKVNLVGHSQGGLTSR 94
Query: 118 CFMSLHKDVFSKFVNKWITIASPFQGA 144
++ D+ + TI +P +G+
Sbjct: 95 YVAAVAPDLVASVT----TIGTPHRGS 117
>pdb|3ICV|A Chain A, Structural Consequences Of A Circular Permutation On
Lipase B From Candida Antartica
pdb|3ICW|A Chain A, Structure Of A Circular Permutation On Lipase B From
Candida Antartica With Bound Suicide Inhibitor
Length = 316
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 92 LETAYKASGNRKVTLITHSMGGLLVMCFMSLHKDVFSKFVNKWITIASPFQG 143
+ T Y SGN K+ ++T S GGL+ ++ + SK V++ + A ++G
Sbjct: 121 ITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSK-VDRLMAFAPDYKG 171
>pdb|1TCB|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCB|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1TCC|B Chain B, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
pdb|1LBS|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|C Chain C, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|D Chain D, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|E Chain E, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBS|F Chain F, Lipase (E.C.3.1.1.3) (Triacylglycerol Hydrolase)
pdb|1LBT|A Chain A, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1LBT|B Chain B, Lipase (e.c.3.1.1.3) (triacylglycerol Hydrolase)
pdb|1TCA|A Chain A, The Sequence, Crystal Structure Determination And
Refinement Of Two Crystal Forms Of Lipase B From Candida
Antarctica
Length = 317
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 96 YKASGNRKVTLITHSMGGLLVMCFMSLHKDVFSKFVNKWITIASPFQG 143
Y SGN K+ ++T S GGL+ ++ + SK V++ + A ++G
Sbjct: 91 YAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSK-VDRLMAFAPDYKG 137
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 81 IDKLMEGLKVKLETAYKASGNRKVTLITHSMGGLLVMCFMSLHKDVFSKFVNKWITIASP 140
++KL+E L+ E AYK G+ ++ HS G L ++L D KF N+ +T A+
Sbjct: 8 VEKLIEELRQLKEKAYKGGGDERIQF-QHSKGKLTARERLALLFD-DGKF-NEIMTFATT 64
Query: 141 FQGAPGC-----INDSLLTGLQFVEGIASFFFVSRWTM 173
G D ++TG V+G F + +T+
Sbjct: 65 RATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFTV 102
>pdb|2WAF|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain R6)
Length = 682
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 216 LETYGPVESISLFKEALRNNELDYNGNSIALPFNFAILDWAAGTRQIINNAQLPNGVSYY 275
L+ YG +ES+ +E + GN+I L + A D + N++L NG + Y
Sbjct: 287 LDKYGNMESVDTIEEGSK-------GNNIKLTIDLAFQDSVDALLKSYFNSELENGGAKY 339
Query: 276 NIYGTSYDTPFDVSYGSETSPIEDLSEICHTMPKYSFV-DGDGT-----VPAESAKADGF 329
+ + + V+ +T + +S I H + D GT VP KA
Sbjct: 340 S------EGVYAVALNPKTGAVLSMSGIKHDLKTGELTPDSLGTVTNVFVPGSVVKAATI 393
Query: 330 PAVERVGVPAEHRELLRDKTVFE 352
+ GV + ++ L VF+
Sbjct: 394 SSGWENGVLSGNQTLTDQSIVFQ 416
>pdb|1PX8|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1PX8|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|A Chain A, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|B Chain B, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|C Chain C, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
pdb|1UHV|D Chain D, Crystal Structure Of Beta-D-Xylosidase From
Thermoanaerobacterium Saccharolyticum, A Family 39
Glycoside Hydrolase
Length = 500
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 259 TRQIINNAQLPNGVSYYNIYGTSY-------DTPFDVSY 290
R+II N+ PN + Y TSY DTPF+ +Y
Sbjct: 259 VREIIKNSHFPNLPFHITEYNTSYSPQNPVHDTPFNAAY 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,509,006
Number of Sequences: 62578
Number of extensions: 540331
Number of successful extensions: 1180
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 14
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)