BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016686
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 26/247 (10%)
Query: 15 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
+T L N+++L L L N I I + +N L ++ L+ T I++ A + + L
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
L+ S++ ++ L + LE LD+SS+ + D SV +A + NL +L +N + S
Sbjct: 156 LNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
+GIL NL+ LSL+G Q+ D I ++ + +L +D++N I G T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
L +++ L L L L L + Q+ D + P+S K L +L+L +++D+S
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
+SSL+KL
Sbjct: 323 VSSLTKL 329
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLNFSSNQ 162
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 15 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
+T L N+++L L L N I I + +N L ++ L+ T I++ A + + L
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
L S++ ++ L + LE LD+SS+ + D SV +A + NL +L +N + S
Sbjct: 156 LSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
+GIL NL+ LSL+G Q+ D I ++ + +L +D++N I G T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
L +++ L L L L L + Q+ D + P+S K L +L+L +++D+S
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
+SSL+KL
Sbjct: 323 VSSLTKL 329
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLSFSSNQ 162
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
+++F N T +T L N++ L + ++N I I PLA ++ L G T N +
Sbjct: 72 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 124
Query: 63 AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
+ +E S + D+S +SL + F L + LE LD+
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
SS+ + D SV +A + NL +L +N + S +GIL NL+ LSL+G Q+ D
Sbjct: 185 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 235
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
I ++ + +L +D++N I G T+L L +++ L L L L L
Sbjct: 236 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 296 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 333
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 126
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL+ + N
Sbjct: 127 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--------------- 166
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 226
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 227 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 257
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
+++F N T +T L N++ L + ++N I I PLA ++ L G T N +
Sbjct: 71 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 123
Query: 63 AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
+ +E S + D+S +SL + F L + LE LD+
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 183
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
SS+ + D SV +A + NL +L +N + S +GIL NL+ LSL+G Q+ D
Sbjct: 184 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 234
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
I ++ + +L +D++N I G T+L L +++ L L L L L
Sbjct: 235 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 294
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 295 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 332
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 45/213 (21%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 125
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL+ + N
Sbjct: 126 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--------------- 165
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 225
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 226 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 15 VTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74
+T L N+++L L L N I I + +N L ++ L+ T I++ A + + L
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTS--LQQ 155
Query: 75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AG 133
L S++ ++ L + LE LD+SS+ + D SV +A + NL +L +N + S
Sbjct: 156 LSFSSNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKL-TNLESLIATNNQISDITP 212
Query: 134 VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDL 191
+GIL NL+ LSL+G Q+ D I ++ + +L +D++N I G T+L
Sbjct: 213 LGILT----NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 192 VL------SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245
L +++ L L L L L + Q+ D + P+S K L +L+L +++D+S
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--P 322
Query: 246 LSSLSKL 252
+SSL+KL
Sbjct: 323 VSSLTKL 329
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 44/213 (20%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL QQ+ ++
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSL--------------QQLSFSSNQ 162
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 163 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 223 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 253
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
+++F N T +T L N++ L + ++N I I PLA ++ L G T N +
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 119
Query: 63 AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
+ +E S + D+S +SL + F L + LE LD+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
SS+ + D SV +A + NL +L +N + S +GIL NL+ LSL+G Q+ D
Sbjct: 180 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 230
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
I ++ + +L +D++N I G T+L L +++ L L L L L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 291 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 45/213 (21%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL+ ++ N
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQ--------------- 161
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 222 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 4 RLSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKIS-LAGTTFINERE 62
+++F N T +T L N++ L + ++N I I PLA ++ L G T N +
Sbjct: 67 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQI 119
Query: 63 AFL----------YIETSLLSFLDVSN----SSLSRFCF---------LTQMKALEHLDL 99
+ +E S + D+S +SL + F L + LE LD+
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDI 179
Query: 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYA 158
SS+ + D SV +A + NL +L +N + S +GIL NL+ LSL+G Q+ D
Sbjct: 180 SSNKVSDISV--LAKL-TNLESLIATNNQISDITPLGILT----NLDELSLNGNQLKD-- 230
Query: 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAE--TDLVL------SLTALQNLNHLERLNLE 210
I ++ + +L +D++N I G T+L L +++ L L L L L
Sbjct: 231 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 290
Query: 211 QTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
+ Q+ D + P+S K L +L+L +++D+S +SSL+KL
Sbjct: 291 ENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 328
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 45/213 (21%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L+ ++ SN+ L+ L + L + ++++ I D + +A + NL L L N + +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITPLANL-TNLTGLTLFNNQITD 121
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDL 191
+L NL L LS I D IS +S + SL+ ++ N
Sbjct: 122 IDP---LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFGNQ--------------- 161
Query: 192 VLSLTALQNLNHLERLNLEQTQVSDATLF--------------------PLSTFKELIHL 231
V L L NL LERL++ +VSD ++ PL L L
Sbjct: 162 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 221
Query: 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264
SL L D+ L+SL+ LT+L + + ++N
Sbjct: 222 SLNGNQLKDIG--TLASLTNLTDLDLANNQISN 252
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
L++ ++ ++ L + + L+LS + + + V +A + + ++ L+L++T+ + V
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 122
Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
LAG L NL++L L QI + IS ++ + +L+++ I N +
Sbjct: 123 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVS--------------D 165
Query: 195 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 254
LT L NL+ L L + ++SD + PL++ LI + L+N ++DVS L++ S L
Sbjct: 166 LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFI 221
Query: 255 LSIRDAVLTN 264
+++ + +TN
Sbjct: 222 VTLTNQTITN 231
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 42/157 (26%)
Query: 127 TRFSSAGVGI--LAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 182
T S+ G G+ + G +L NL L L QI D A P I+ ++ G
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-------PLKNLTKITELELSG-- 94
Query: 183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT--------------------LFPL 222
+ + +++A+ L ++ L+L TQ++D T + PL
Sbjct: 95 -------NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147
Query: 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259
+ L +LS+ NA ++D L L++LSKLT L D
Sbjct: 148 AGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADD 182
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 93/176 (52%), Gaps = 25/176 (14%)
Query: 75 LDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV 134
L++ ++ ++ L + + L+LS + + + V +A + + ++ L+L++T+ + V
Sbjct: 74 LELKDNQITDLTPLKNLTKITELELSGNPLKN--VSAIAGLQS-IKTLDLTSTQITD--V 128
Query: 135 GILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS 194
LAG L NL++L L QI + IS ++ + +L+++ I N +
Sbjct: 129 TPLAG-LSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNNQVN--------------D 171
Query: 195 LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSL 249
LT L NL+ L L + ++SD + PL++ LI + L++ ++DVS L LS+L
Sbjct: 172 LTPLANLSKLTTLRADDNKISD--ISPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 29/128 (22%)
Query: 158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLS------LTALQNLNHLERLNLEQ 211
I Y++ + L+ D TD+ + + T+L LS ++A+ L ++ L+L
Sbjct: 64 GIQYLNNLIGLELKDNQITDLTPL-KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 122
Query: 212 TQVSDAT--------------------LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSK 251
TQ++D T + PL+ L +LS+ N + D L L++LSK
Sbjct: 123 TQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVND--LTPLANLSK 180
Query: 252 LTNLSIRD 259
LT L D
Sbjct: 181 LTTLRADD 188
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGT 152
LE + L ++ DD +E++A N + L LS+ FS+ G+ +A NL+ L L +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Query: 153 QIDDYAISYMSMMP 166
+DD + ++S P
Sbjct: 167 DVDDVSGHWLSHFP 180
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 15/162 (9%)
Query: 69 TSLLSFLDVS-NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 127
T+ L +LD+S N ++ ++ LEHLD S + S V NL L++S+T
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 186
A GI G L +LE+L ++G +++ + + +L F+D+S ++
Sbjct: 432 HTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------ 484
Query: 187 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 228
LS TA +L+ L+ LN+ FP L
Sbjct: 485 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 69 TSLLSFLDVS-NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 127
T+ L +LD+S N ++ ++ LEHLD S + S V NL L++S+T
Sbjct: 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 128 RFSSAGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVG 186
A GI G L +LE+L ++G +++ + + +L F+D+S ++
Sbjct: 137 HTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------ 189
Query: 187 AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241
LS TA +L+ L+ LN+ FP +K L L + + SL +
Sbjct: 190 ------LSPTAFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHI 235
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 72 LSFLDVS-NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 130
L +LD+S N ++ ++ LEHLD S + S V NL L++S+T
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 131 SAGVGILAGHLPNLEILSLSGTQI-DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAET 189
A GI G L +LE+L ++G +++ + + +L F+D+S ++
Sbjct: 459 VAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--------- 508
Query: 190 DLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKEL 228
LS TA +L+ L+ LN+ FP L
Sbjct: 509 ---LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 29/132 (21%)
Query: 127 TRFSSAG--VGILAG--HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 182
T+ AG V + G +L NLE L+L+G QI D IS +S + L + I
Sbjct: 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIG-------- 96
Query: 183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 242
T+ + ++ALQNL +L L L + +SD + PL+ + L+L +
Sbjct: 97 ------TNKITDISALQNLTNLRELYLNEDNISDIS--PLANLTKXYSLNLG-------A 141
Query: 243 LHQLSSLSKLTN 254
H LS LS L+N
Sbjct: 142 NHNLSDLSPLSN 153
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 51/218 (23%)
Query: 88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147
+ + +LEHLDLS + + + S + + L LNL + + G L HL L+IL
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQIL 128
Query: 148 ------SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 201
+ + Q D+A + L+ ++I +D++ + + SL ++QN+
Sbjct: 129 RVGNMDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPK---------SLKSIQNV 174
Query: 202 NHL---------------------ERLNLEQTQVSDATLFPLSTFKE---LIHLSLRNAS 237
+HL E L L T + LST + + + RN
Sbjct: 175 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 234
Query: 238 LTDVSLHQ----LSSLSKLTNLSIRDAVLTNSGLGSFK 271
+TD SL Q L+ +S L L D L +G+G+F+
Sbjct: 235 ITDESLFQVMKLLNQISGLLELEFDDCTL--NGVGNFR 270
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 65 LYIETSLLSFLDVSNSSLSRF-CFLTQ-MKALEHLDLSSSMIGDDSVEMVACVGA 117
LY T + + V NS + C L+Q +K+LE+LDLS +++ ++ ++ AC A
Sbjct: 305 LYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDA 359
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 3 PRLSFLNLAWTGV------TKLPNISSLECLNLSNCTIDSILEGNENKAP-LAKISLAGT 55
P+L L+LA+T + + N+ L+ LNLS+ +D E + P L ++L G
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 56 TF-------INEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 108
F N + +E +LSF D+S S+ + F T +K + H+DLS + + S
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAF-TSLKMMNHVDLSHNRLTSSS 516
Query: 109 VEMVA 113
+E ++
Sbjct: 517 IEALS 521
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 178
LS+ R S G+ +LA PNL L+LSG +I D + I + + +LK +D+ N ++
Sbjct: 71 LSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 42 ENKAPLAKISLAGTTFINEREAFLYIETSL-----LSFLDVSNSSLSRFC------FLTQ 90
+ K L ++SLAG +E A L E+ L L L V + SL+ C LTQ
Sbjct: 277 QAKETLKELSLAGNKLGDEG-ARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQ 335
Query: 91 MKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVGILA 138
K L L LSS+ +GD ++ + G LR L L + +++G LA
Sbjct: 336 NKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLA 387
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 72 LSFLDVSNSSLSR-FCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRF 129
L FLDVS+++ S FL AL+HLD+S + + GD S + C L+ LN+S+ +F
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--ELKLLNISSNQF 259
Query: 130 SSAGVGILAGHLPNLEILSL 149
G +P L + SL
Sbjct: 260 --------VGPIPPLPLKSL 271
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 13 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 72
T +T L + S L+ LN+S+ T+D K+S G +N E L + + +
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFP----------GKVS--GGLKLNSLEV-LDLSANSI 163
Query: 73 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 132
S +V LS C L+HL +S + I D V++ CV NL L++S+ FS+
Sbjct: 164 SGANVVGWVLSDGC-----GELKHLAISGNKISGD-VDVSRCV--NLEFLDVSSNNFST- 214
Query: 133 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 192
G+ L G L+ L +SG ++ +S LK ++IS+ G I + ++
Sbjct: 215 GIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 193 LSL 195
LSL
Sbjct: 274 LSL 276
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 72 LSFLDVSNSSLSR-FCFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRF 129
L FLDVS+++ S FL AL+HLD+S + + GD S + C L+ LN+S+ +F
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT--ELKLLNISSNQF 256
Query: 130 SSAGVGILAGHLPNLEILSL 149
G +P L + SL
Sbjct: 257 --------VGPIPPLPLKSL 268
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 23/184 (12%)
Query: 13 TGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLL 72
T +T L + S L+ LN+S+ T+D K+S G +N E L + + +
Sbjct: 114 TTLTSLGSCSGLKFLNVSSNTLDFP----------GKVS--GGLKLNSLEV-LDLSANSI 160
Query: 73 SFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA 132
S +V LS C L+HL +S + I D V++ CV NL L++S+ FS+
Sbjct: 161 SGANVVGWVLSDGC-----GELKHLAISGNKISGD-VDVSRCV--NLEFLDVSSNNFST- 211
Query: 133 GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 192
G+ L G L+ L +SG ++ +S LK ++IS+ G I + ++
Sbjct: 212 GIPFL-GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 270
Query: 193 LSLT 196
LSL
Sbjct: 271 LSLA 274
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 91 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 150
+ +LEHLDLS + + S + ++L+ LNL + + GV L +L NL+ L +
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 151 GTQI--DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL---- 204
+ + I + + SL ++I ++ + Q SL ++++++HL
Sbjct: 158 NVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQ---------SLKSIRDIHHLTLHL 207
Query: 205 -----------------ERLNLEQTQVSDATLFPL---STFKELIHLSLRNASLTDVSLH 244
L L T ++ PL + L+ R + LTD S +
Sbjct: 208 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 267
Query: 245 QLSSLSK----LTNLSIRDAVLTNSGLGSFKPPRS 275
+L L + L+ + D L +GLG F P S
Sbjct: 268 ELLKLLRYILELSEVEFDDCTL--NGLGDFNPSES 300
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 87 FLTQMKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSS-AGVGILAGHLPN 143
F +K+LE LDLS +++ ++ ++ AC GA +L+ L LS S G + L N
Sbjct: 355 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 414
Query: 144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN- 202
L L +S S ++F+++S+T I+ ++ +T VL ++ NL+
Sbjct: 415 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN-NNLDS 471
Query: 203 ------HLERLNLEQTQVS---DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
L+ L + + ++ DA+LFP+ ++ L+ S+ D +L+SL K+
Sbjct: 472 FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQLK--SVPDGIFDRLTSLQKI 528
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 91 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 150
+ +LEHLDLS + + S + ++L+ LNL + + GV L +L NL+ L +
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 151 GTQI--DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL---- 204
+ + I + + SL ++I ++ + Q SL ++++++HL
Sbjct: 132 NVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQ---------SLKSIRDIHHLTLHL 181
Query: 205 -----------------ERLNLEQTQVSDATLFPL---STFKELIHLSLRNASLTDVSLH 244
L L T ++ PL + L+ R + LTD S +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 245 QLSSLSK----LTNLSIRDAVLTNSGLGSFKPPRS 275
+L L + L+ + D L +GLG F P S
Sbjct: 242 ELLKLLRYILELSEVEFDDCTL--NGLGDFNPSES 274
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 87 FLTQMKALEHLDLSSSMIGDDSVEMVACVGA--NLRNLNLSNTRFSS-AGVGILAGHLPN 143
F +K+LE LDLS +++ ++ ++ AC GA +L+ L LS S G + L N
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388
Query: 144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN- 202
L L +S S ++F+++S+T I+ ++ +T VL ++ NL+
Sbjct: 389 LTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSN-NNLDS 445
Query: 203 ------HLERLNLEQTQVS---DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252
L+ L + + ++ DA+LFP+ ++ L+ S+ D +L+SL K+
Sbjct: 446 FSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLK--SVPDGIFDRLTSLQKI 502
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 178
LS R S + +LA PNL+ L+LSG +I D + I + + +LK +D+ N ++
Sbjct: 76 LSENRIS-GDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 130
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 72 LSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS 131
L FL N L+ L ++ L+ L+LS + I D +E++A NL++LNLS +
Sbjct: 49 LEFLSTINVGLTSISNLPKLNKLKKLELSENRISGD-LEVLAEKCPNLKHLNLSGNKIKD 107
Query: 132 AGVGILAGHLPNLEILSL---SGTQIDDYAISYMSMMPSLKFID--------ISNTDIKG 180
L NL+ L L T ++ Y + ++P + ++D ++D++G
Sbjct: 108 LSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLPQVMYLDGYDRDNKEAPDSDVEG 167
Query: 181 FI 182
++
Sbjct: 168 YV 169
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 132 AGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKFIDISNTDI 178
G+ +LA LPNL L+LSG ++ D + + + + LK +D+ N ++
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT 176
A +R L L N + + + L NLE LSL + ++S + +P LK +++S
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSEN 81
Query: 177 DIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-ATLFPLSTFKELIHLSLRN 235
I G + + + L NL H LNL ++ D +TL PL + L L L N
Sbjct: 82 RIFGGLDMLAEK---------LPNLTH---LNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 236 ASLTDVSLHQLSSLSKLTNLSIRDA 260
+T+++ ++ S L L+ D
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDG 154
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 45/192 (23%)
Query: 88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147
+ + +LEHLDLS + + + S + ++L LNL + + G L HL L+IL
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 148 ------SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL 201
+ + Q D+A + L+ ++I +D++ + + SL ++QN+
Sbjct: 155 RVGNMDTFTKIQRKDFA-----GLTFLEELEIDASDLQSYEPK---------SLKSIQNV 200
Query: 202 NHL---------------------ERLNLEQTQVSDATLFPLSTFKE---LIHLSLRNAS 237
+HL E L L T + LST + + + RN
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260
Query: 238 LTDVSLHQLSSL 249
+TD SL Q+ L
Sbjct: 261 ITDESLFQVMKL 272
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 151
++H+DLS+S+I ++ + + L+NL+L R S V LA + NL L+LSG
Sbjct: 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSG 151
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 151
++H+DLS+S+I ++ + + L+NL+L R S V LA + NL L+LSG
Sbjct: 57 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSG 113
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 58 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 113
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
L L AL+ L L+ L L+ ++ L+ +L LSL N +L
Sbjct: 114 TS------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
T++ L+ L L L +++ L G F
Sbjct: 162 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
LT++ L+ L L L +++ L G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRAELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
+LT++ L+ L L L +++ L G F
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
L L AL+ L L+ L L+ ++ L+ +L LSL N L
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
T++ L+ L L L +++ L G F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 202
N +L+L QI ++ + L+ + +S I+ ++GA L NLN
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI--EIGA-------FNGLANLN 115
Query: 203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRN---ASLTDVSLHQLSSLSKL 252
LE + T + + LS KEL LRN S+ + +++ SL +L
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELW---LRNNPIESIPSYAFNRIPSLRRL 165
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + ++ P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238
L L AL+ L L+ L L+ ++ L+ +L LSL N L
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Query: 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
T++ L+ L L L +++ L G F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
LT++ L+ L L L +++ L G F
Sbjct: 159 QLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
L LNL + V G LP L L LS Q+ + +P+L +D+S +
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRL 112
Query: 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFP--LSTFKELIHLSLRNA 236
L L AL+ L L+ L L+ ++ TL P L+ +L LSL N
Sbjct: 113 TS------------LPLGALRGLGELQELYLKGNELK--TLPPGLLTPTPKLEKLSLANN 158
Query: 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270
LT++ L+ L L L +++ L G F
Sbjct: 159 DLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 5 LSFLNLAWTGVTKLPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAF 64
LSF +LA + ++ +C+N + IL+ + N + I+ + I++ +AF
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-DITGNFSNAISKSQAF 234
Query: 65 -----LYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANL 119
+I + F ++ + + F L + ++ HLDLS + + + + +L
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETL-KDL 292
Query: 120 RNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178
+ LNL+ + + G L NL++L+LS + + S +P + +ID+ I
Sbjct: 293 KVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,894,588
Number of Sequences: 62578
Number of extensions: 304660
Number of successful extensions: 869
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 136
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)