Query 016686
Match_columns 384
No_of_seqs 233 out of 4047
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-35 2.4E-40 309.4 16.4 268 2-286 92-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-35 4.4E-40 307.5 16.0 266 4-286 70-344 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.8E-33 6.1E-38 254.6 3.5 342 4-376 79-437 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.1E-31 6.7E-36 241.4 -0.4 306 1-330 100-439 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.1E-29 4.5E-34 231.4 -0.6 330 2-368 6-352 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 6.7E-28 1.4E-32 221.6 -5.5 264 3-286 55-328 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1E-27 2.2E-32 209.7 -13.1 341 3-368 114-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 1.1E-26 2.5E-31 203.1 -11.5 259 4-286 46-309 (565)
9 KOG0618 Serine/threonine phosp 99.9 4.7E-24 1E-28 204.2 -3.1 328 4-369 46-466 (1081)
10 KOG4237 Extracellular matrix p 99.9 1.8E-23 3.9E-28 182.8 0.4 286 9-297 52-369 (498)
11 KOG0618 Serine/threonine phosp 99.8 4.9E-22 1.1E-26 190.5 -1.0 264 3-285 219-487 (1081)
12 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-19 2.7E-24 165.7 14.4 188 90-286 79-290 (319)
13 PLN03210 Resistant to P. syrin 99.8 1.2E-19 2.6E-24 190.4 15.3 321 2-366 557-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 2.4E-19 5.1E-24 176.3 13.0 247 5-286 203-457 (788)
15 cd00116 LRR_RI Leucine-rich re 99.8 5.6E-19 1.2E-23 161.5 14.4 280 50-367 3-319 (319)
16 PRK15387 E3 ubiquitin-protein 99.8 2.3E-19 5E-24 176.4 11.9 259 22-345 201-465 (788)
17 PLN03210 Resistant to P. syrin 99.8 2.3E-17 5.1E-22 173.3 19.0 126 143-286 779-905 (1153)
18 PRK15370 E3 ubiquitin-protein 99.8 4.9E-18 1.1E-22 167.9 11.9 245 3-287 178-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 2.5E-18 5.5E-23 169.9 8.6 250 22-320 178-428 (754)
20 KOG4237 Extracellular matrix p 99.7 3.4E-19 7.4E-24 156.2 -3.3 245 4-263 68-359 (498)
21 KOG0617 Ras suppressor protein 99.5 3.5E-17 7.5E-22 128.1 -7.1 159 20-184 31-191 (264)
22 KOG1909 Ran GTPase-activating 99.5 3.1E-14 6.8E-19 123.6 6.8 139 140-286 155-310 (382)
23 KOG0617 Ras suppressor protein 99.5 7.7E-17 1.7E-21 126.2 -9.0 158 40-216 28-187 (264)
24 KOG1909 Ran GTPase-activating 99.5 1.4E-13 3.1E-18 119.5 8.8 235 20-262 28-310 (382)
25 KOG3207 Beta-tubulin folding c 99.4 7E-14 1.5E-18 124.8 1.3 185 68-264 144-340 (505)
26 KOG3207 Beta-tubulin folding c 99.4 7.4E-14 1.6E-18 124.6 0.1 212 20-240 119-340 (505)
27 PF14580 LRR_9: Leucine-rich r 99.3 2.7E-12 5.8E-17 104.6 5.5 135 10-149 4-147 (175)
28 PF14580 LRR_9: Leucine-rich r 99.3 1.5E-12 3.3E-17 106.0 4.0 141 29-173 4-147 (175)
29 KOG4341 F-box protein containi 99.2 1.4E-11 3E-16 109.7 4.8 294 5-309 140-461 (483)
30 KOG1259 Nischarin, modulator o 99.2 5.1E-12 1.1E-16 107.9 0.1 223 20-264 180-413 (490)
31 COG4886 Leucine-rich repeat (L 99.1 8.4E-11 1.8E-15 110.7 5.2 196 7-223 97-298 (394)
32 KOG0532 Leucine-rich repeat (L 99.1 2.5E-12 5.4E-17 118.5 -5.2 171 47-240 77-248 (722)
33 KOG0531 Protein phosphatase 1, 99.1 1.6E-11 3.5E-16 115.9 -0.4 238 3-264 72-319 (414)
34 KOG1259 Nischarin, modulator o 99.1 4.5E-11 9.8E-16 102.2 2.1 180 20-217 212-414 (490)
35 KOG2120 SCF ubiquitin ligase, 99.1 2.3E-11 5.1E-16 103.8 0.3 196 94-303 187-390 (419)
36 COG4886 Leucine-rich repeat (L 99.1 3.6E-10 7.7E-15 106.5 8.1 175 69-264 115-291 (394)
37 KOG2120 SCF ubiquitin ligase, 99.0 5.9E-11 1.3E-15 101.4 1.4 80 24-104 187-272 (419)
38 KOG0532 Leucine-rich repeat (L 99.0 9.8E-12 2.1E-16 114.7 -5.9 212 50-284 55-270 (722)
39 PLN03150 hypothetical protein; 98.9 2.5E-09 5.4E-14 105.8 8.3 109 168-288 420-529 (623)
40 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.4E-15 110.2 -2.8 240 22-286 72-317 (414)
41 PLN03150 hypothetical protein; 98.8 6.9E-09 1.5E-13 102.6 8.0 110 143-264 419-529 (623)
42 COG5238 RNA1 Ran GTPase-activa 98.8 9.5E-09 2.1E-13 87.0 7.3 145 141-292 156-321 (388)
43 PF13855 LRR_8: Leucine rich r 98.8 2.9E-09 6.2E-14 71.4 2.5 57 228-284 3-59 (61)
44 PF13855 LRR_8: Leucine rich r 98.8 4E-09 8.8E-14 70.7 2.9 61 202-262 1-61 (61)
45 KOG4341 F-box protein containi 98.7 5.9E-09 1.3E-13 93.2 2.8 268 23-303 139-429 (483)
46 KOG2982 Uncharacterized conser 98.7 5.5E-09 1.2E-13 89.5 2.4 208 69-290 70-293 (418)
47 KOG4658 Apoptotic ATPase [Sign 98.6 3.7E-08 7.9E-13 100.0 6.1 151 20-175 521-677 (889)
48 COG5238 RNA1 Ran GTPase-activa 98.6 2.5E-07 5.4E-12 78.5 9.2 43 224-266 212-258 (388)
49 KOG2982 Uncharacterized conser 98.6 2.7E-08 5.8E-13 85.4 3.3 206 23-240 46-263 (418)
50 KOG1859 Leucine-rich repeat pr 98.6 8.1E-10 1.7E-14 105.0 -6.5 86 198-286 205-291 (1096)
51 KOG1859 Leucine-rich repeat pr 98.5 2.9E-09 6.2E-14 101.4 -4.4 176 68-264 107-293 (1096)
52 KOG4658 Apoptotic ATPase [Sign 98.5 7.5E-08 1.6E-12 97.8 4.6 142 4-149 524-675 (889)
53 KOG3665 ZYG-1-like serine/thre 98.3 1.4E-06 3.1E-11 86.4 7.7 149 23-172 123-281 (699)
54 PF12799 LRR_4: Leucine Rich r 98.3 9.8E-07 2.1E-11 54.3 4.1 39 23-61 2-40 (44)
55 KOG1644 U2-associated snRNP A' 98.3 1.1E-06 2.3E-11 71.6 5.0 120 6-128 22-151 (233)
56 KOG3665 ZYG-1-like serine/thre 98.2 3.3E-06 7.2E-11 83.8 7.5 152 92-256 122-281 (699)
57 PF12799 LRR_4: Leucine Rich r 98.1 5.2E-06 1.1E-10 51.0 4.7 42 45-88 1-42 (44)
58 KOG4579 Leucine-rich repeat (L 98.1 2.6E-07 5.5E-12 70.4 -1.5 105 23-130 28-136 (177)
59 KOG1644 U2-associated snRNP A' 98.0 4.4E-06 9.6E-11 68.1 4.0 106 70-176 42-150 (233)
60 KOG4579 Leucine-rich repeat (L 98.0 7.4E-07 1.6E-11 68.0 -1.9 101 5-107 29-138 (177)
61 KOG2123 Uncharacterized conser 98.0 4.1E-07 8.8E-12 77.6 -3.8 76 5-81 21-99 (388)
62 KOG1947 Leucine rich repeat pr 97.9 1.5E-05 3.3E-10 77.0 5.5 109 43-153 186-306 (482)
63 PRK15386 type III secretion pr 97.8 6.8E-05 1.5E-09 69.1 7.5 53 21-80 51-104 (426)
64 KOG1947 Leucine rich repeat pr 97.6 9.6E-05 2.1E-09 71.5 6.2 112 68-179 186-308 (482)
65 KOG2739 Leucine-rich acidic nu 97.5 2.6E-05 5.7E-10 66.3 0.8 105 20-126 41-152 (260)
66 KOG2123 Uncharacterized conser 97.5 1.3E-05 2.9E-10 68.6 -1.9 102 43-148 17-123 (388)
67 PF13306 LRR_5: Leucine rich r 97.3 0.00053 1.1E-08 53.4 5.4 59 197-258 53-111 (129)
68 PRK15386 type III secretion pr 97.2 0.0024 5.3E-08 59.1 9.2 136 68-236 50-187 (426)
69 KOG2739 Leucine-rich acidic nu 97.2 0.00014 3.1E-09 61.9 1.0 84 70-154 43-128 (260)
70 PF13306 LRR_5: Leucine rich r 96.8 0.0045 9.7E-08 48.0 6.4 107 160-283 6-112 (129)
71 KOG4308 LRR-containing protein 96.7 9.5E-05 2.1E-09 70.5 -4.2 186 72-265 89-305 (478)
72 KOG4308 LRR-containing protein 96.6 0.00014 3.1E-09 69.3 -3.9 62 119-180 89-158 (478)
73 KOG3864 Uncharacterized conser 95.8 0.0052 1.1E-07 50.6 2.0 83 93-176 102-186 (221)
74 PF00560 LRR_1: Leucine Rich R 95.7 0.0039 8.5E-08 31.8 0.6 17 24-40 2-18 (22)
75 PF13504 LRR_7: Leucine rich r 94.7 0.021 4.5E-07 27.0 1.3 14 4-17 2-15 (17)
76 KOG3864 Uncharacterized conser 93.6 0.057 1.2E-06 44.6 2.6 83 203-285 102-187 (221)
77 PF00560 LRR_1: Leucine Rich R 92.9 0.07 1.5E-06 27.0 1.4 12 252-263 2-13 (22)
78 smart00369 LRR_TYP Leucine-ric 92.8 0.068 1.5E-06 28.3 1.3 17 23-39 3-19 (26)
79 smart00370 LRR Leucine-rich re 92.8 0.068 1.5E-06 28.3 1.3 17 23-39 3-19 (26)
80 PF13516 LRR_6: Leucine Rich r 91.7 0.092 2E-06 27.2 1.0 21 92-112 2-22 (24)
81 PF13516 LRR_6: Leucine Rich r 91.2 0.27 5.8E-06 25.4 2.5 21 274-295 2-22 (24)
82 smart00370 LRR Leucine-rich re 90.9 0.24 5.2E-06 26.1 2.1 18 2-19 1-18 (26)
83 smart00369 LRR_TYP Leucine-ric 90.9 0.24 5.2E-06 26.1 2.1 18 2-19 1-18 (26)
84 smart00365 LRR_SD22 Leucine-ri 90.6 0.26 5.6E-06 26.2 2.0 21 2-22 1-21 (26)
85 smart00367 LRR_CC Leucine-rich 89.9 0.5 1.1E-05 25.0 2.9 24 273-296 1-24 (26)
86 smart00368 LRR_RI Leucine rich 89.6 0.71 1.5E-05 24.9 3.4 24 274-298 2-25 (28)
87 KOG3763 mRNA export factor TAP 84.2 0.9 2E-05 43.5 3.0 63 20-83 216-283 (585)
88 KOG3763 mRNA export factor TAP 78.7 2 4.3E-05 41.3 3.2 61 68-130 216-283 (585)
89 KOG0473 Leucine-rich repeat pr 77.2 0.042 9E-07 46.5 -7.3 91 18-110 38-129 (326)
90 smart00364 LRR_BAC Leucine-ric 77.1 1.8 4E-05 22.9 1.4 16 4-19 3-18 (26)
91 KOG0473 Leucine-rich repeat pr 71.3 0.13 2.8E-06 43.6 -5.9 85 42-130 39-124 (326)
92 KOG4242 Predicted myosin-I-bin 62.8 27 0.00058 33.3 6.6 284 4-299 166-492 (553)
93 TIGR00864 PCC polycystin catio 44.6 14 0.0003 43.0 2.0 36 257-292 2-37 (2740)
94 PF07723 LRR_2: Leucine Rich R 39.0 25 0.00054 18.5 1.5 24 275-298 1-24 (26)
95 KOG4242 Predicted myosin-I-bin 32.3 91 0.002 29.9 5.0 192 94-286 216-452 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-35 Score=309.45 Aligned_cols=268 Identities=22% Similarity=0.242 Sum_probs=153.8
Q ss_pred CCCCcEEEccCCCCC-CCC-----CCCCCcEEEccCCCchh-HHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccE
Q 016686 2 FPRLSFLNLAWTGVT-KLP-----NISSLECLNLSNCTIDS-ILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74 (384)
Q Consensus 2 l~~L~~L~l~~n~i~-~l~-----~~~~L~~L~ls~n~i~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 74 (384)
+++|+.|++++|.+. .+| .+++|++|++++|.+.+ +|. ..+++|++|++++|.+++..+. .+.++++|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCE
Confidence 577788888877765 233 56677777777776653 332 2456666666666666543222 2346666666
Q ss_pred EEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 75 LDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 75 L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n 246 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYN 246 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhH-hcCCCCCEEECcCc
Confidence 66666665433 345566666666666666665566666666 666666666666665555444 45666666666666
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 232 (384)
.+.+..|..+..+++|+.|++++|.+.+..|. .+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP------------SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCch------------hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 66555555666666666666666666555444 344455555555555555544444445555555555
Q ss_pred cCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 233 LRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 233 L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
+++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 555555544444455555555555555555444444444444555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-35 Score=307.53 Aligned_cols=266 Identities=20% Similarity=0.244 Sum_probs=168.6
Q ss_pred CCcEEEccCCCCCC-----CCCCCCCcEEEccCCCch-hHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 4 RLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 4 ~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~-~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++.|++++|.+++ +..+++|+.|++++|.+. .+|..++ .+++|++|++++|.+++..+. ..+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence 45666666666553 235666666666666665 4565555 666666666666666543322 2456666666
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 154 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i 154 (384)
+++|.+.+. ..+..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNL 224 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCcc
Confidence 666666533 345666666666666666666666666666 666666666666665555544 4566666666666666
Q ss_pred ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcC
Q 016686 155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLR 234 (384)
Q Consensus 155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 234 (384)
.+..|..+..+++|++|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS------------SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccCh------------hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 666666666666666666666666655555 46666666666666666666566666666666666666
Q ss_pred CCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 235 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
+|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 6666666666666666666666666666666666666666666666666665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-33 Score=254.59 Aligned_cols=342 Identities=19% Similarity=0.181 Sum_probs=280.6
Q ss_pred CCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 4 RLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 4 ~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
.-+.||+++|.+.. +.++++|+++++..|.++.||.......+|+.|+|.+|.|+.+... .+.-++.|+.||||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhhh
Confidence 34679999999886 4589999999999999999998777888899999999999887654 35577999999999
Q ss_pred cCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCCh
Q 016686 79 NSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 156 (384)
Q Consensus 79 ~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~ 156 (384)
.|.|+.+ +.+..-.++++|+|++|.|+....++|..+ .+|..|.|+.|+++...+..| +.+++|+.|++..|+|.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l-nsL~tlkLsrNrittLp~r~F-k~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL-NSLLTLKLSRNRITTLPQRSF-KRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccccccccc-chheeeecccCcccccCHHHh-hhcchhhhhhccccceee
Confidence 9999888 567777789999999999998888889988 899999999999997766665 779999999999999864
Q ss_pred HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686 157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236 (384)
Q Consensus 157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 236 (384)
.--..|.++++|+.|.+..|.+...... +|..+.++++|+++.|+++.....++.+++.|+.|++++|
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG------------~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDG------------AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCc------------ceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 4345688999999999999999877666 6888999999999999999887788889999999999999
Q ss_pred CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ 316 (384)
Q Consensus 237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 316 (384)
.|..+.++.+..+++|+.|++++|+|+...+..|..+..|++|.|+.|.+..- -...+..+.+++ .+++..
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l--~e~af~~lssL~-------~LdLr~ 374 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL--AEGAFVGLSSLH-------KLDLRS 374 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH--HhhHHHHhhhhh-------hhcCcC
Confidence 99988888888899999999999999998888888899999999999987321 122233445555 567777
Q ss_pred cccCCCCCC------chhhhhhh---hhhcCCCCCCc-hhhHHhhhhhcHHHHHhhhcccccccCCCCCc
Q 016686 317 IGSNGPSPS------RTSLRASL---VKQKQDPMPMS-HSFLDQRLKYSREELLELQYSSLSLARPDDSS 376 (384)
Q Consensus 317 n~~~~~~p~------~~~~~~~l---~n~l~~~ip~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 376 (384)
|.++..|-+ .+..++++ .|++. .||.. + ..+..|+.|||.+|.|...-|.-++
T Consensus 375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAf------sgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAF------SGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred CeEEEEEecchhhhccchhhhheeecCceee-ecchhhh------ccCcccceecCCCCcceeecccccc
Confidence 776554322 23344444 77777 56665 5 7899999999999999887775443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-31 Score=241.40 Aligned_cols=306 Identities=19% Similarity=0.230 Sum_probs=196.1
Q ss_pred CCCCCcEEEccCCCCCCCCCC----CCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 1 MFPRLSFLNLAWTGVTKLPNI----SSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 1 ~l~~L~~L~l~~n~i~~l~~~----~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
++++|+++++.+|.++.+|.. .+|+.|++.+|.|+++.. .+..++.|+.||||.|.++.++.. .|..-+++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceEE
Confidence 367777777777777766532 246666666666654322 222445555555555555554433 23444555555
Q ss_pred EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC------------------------C
Q 016686 76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR------------------------F 129 (384)
Q Consensus 76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~------------------------l 129 (384)
+|++|.|+.+ ..|..+.+|..|.|+.|.++...+..|.++ ++|+.|+|..|+ +
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L-~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL-PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhc-chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 5555555544 344444455555555555554444444444 555555555554 4
Q ss_pred CchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEc
Q 016686 130 SSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNL 209 (384)
Q Consensus 130 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 209 (384)
.......|. .+.++++|++..|+++.....++.++++|+.|++++|.|....++ ++..+++|+.|++
T Consensus 258 ~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d------------~WsftqkL~~LdL 324 (873)
T KOG4194|consen 258 SKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID------------SWSFTQKLKELDL 324 (873)
T ss_pred ccccCccee-eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc------------hhhhcccceeEec
Confidence 433333332 255677777777777666556666777777777777777666555 6777788888888
Q ss_pred cCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc---ccccccCCCCCCEEEccCCcC
Q 016686 210 EQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS---GLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 210 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~~ 286 (384)
+.|+++...+..+..++.|++|+|++|.++......|..+++|++|+++.|.+... ....|..+++|+.|++.+|++
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 88888887777788888888888888888877777788888888888888886653 234566778888888888887
Q ss_pred CCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhh
Q 016686 287 LTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLR 330 (384)
Q Consensus 287 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~ 330 (384)
.+ .....+.+++.++ .+++-+|.+-..-|..+..+
T Consensus 405 k~--I~krAfsgl~~LE-------~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 405 KS--IPKRAFSGLEALE-------HLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ee--cchhhhccCcccc-------eecCCCCcceeecccccccc
Confidence 43 3345566777777 67888888776666666554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-29 Score=231.42 Aligned_cols=330 Identities=18% Similarity=0.212 Sum_probs=266.8
Q ss_pred CCCCcEEEccCCCCCC--CC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTK--LP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~--l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+|.++.+|+++|++++ +| .|.+++.|.+...++..+|..++.+.+|++|.+++|++..+...+. .+|.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs--~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS--DLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc--cchhhHHH
Confidence 5778899999999984 55 6889999999999999999999999999999999999998877654 89999999
Q ss_pred EeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 76 DVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 76 ~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
.+..|++... +.+.++..|+.|||++|++. .+|..+... .++-.|+|+.|+|.. +|..++-++..|-.|+++.|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A-Kn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA-KNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh-cCcEEEEcccCcccc-CCchHHHhhHhHhhhccccc
Confidence 9999988544 57888999999999999998 688888887 899999999999984 45555567899999999999
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC-cccccccccCCCCcEE
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-DATLFPLSTFKELIHL 231 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L 231 (384)
++. ..|..+..+..|++|++++|.+....-. .+..+++|+.|++++.+-+ .-+|..+..+.+|..+
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLR------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHh------------cCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 986 5566788999999999999988654222 3455678888899887433 3367888899999999
Q ss_pred EcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccc
Q 016686 232 SLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVI 311 (384)
Q Consensus 232 ~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (384)
+++.|.+.. .|+.+.++++|+.|++++|+|+..... .....+|++|+++.|+++.. +..+| .++++. .
T Consensus 228 DlS~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L--P~avc-KL~kL~-------k 295 (1255)
T KOG0444|consen 228 DLSENNLPI-VPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL--PDAVC-KLTKLT-------K 295 (1255)
T ss_pred cccccCCCc-chHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc--hHHHh-hhHHHH-------H
Confidence 999999886 788999999999999999999875432 23447899999999998553 23333 334443 3
Q ss_pred cCCCccccC-CCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686 312 CPSDQIGSN-GPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS 368 (384)
Q Consensus 312 ~~l~~n~~~-~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~ 368 (384)
+-+..|+++ .-||..|+++..+ +|.+. -+|+++ +.|.+|+.|.|++|++-
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl------cRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL------CRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh------hhhHHHHHhccccccee
Confidence 344455543 3488999988887 66666 679988 89999999999999873
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.7e-28 Score=221.57 Aligned_cols=264 Identities=19% Similarity=0.243 Sum_probs=138.6
Q ss_pred CCCcEEEccCCCCCC----CCCCCCCcEEEccCCCch--hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
.+|++|.+++|++.. +..+|.|+.+++..|++. +||.+++.+..|+.|+||+|+++..|..+. ...++-+|+
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE--~AKn~iVLN 132 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE--YAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh--hhcCcEEEE
Confidence 345555555555442 335555555555555544 456666666666666666666655555433 345555566
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 154 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i 154 (384)
||+|+|..+ +.+-+++.|-.|||++|.+. ..|+.+.++ ..|+.|.|++|.+.......+ -.+++|++|.+++.+-
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL-~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL-SMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQR 209 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHH-hhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccc
Confidence 666665555 34445555555566666555 345555555 556666666555543333322 2244555555554442
Q ss_pred C-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686 155 D-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 233 (384)
Q Consensus 155 ~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 233 (384)
+ ...|..+..+.+|..+|++.|.+..+ |. .+.++++|+.|++++|.++.. ....+.+.+|++|++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pe------------cly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIV-PE------------CLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNL 275 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcc-hH------------HHhhhhhhheeccCcCceeee-eccHHHHhhhhhhcc
Confidence 2 22344445555555566665555432 33 344555566666666655542 222334455555666
Q ss_pred CCCCCChhhHHhccCCCCCCEEEccCCccCcc-ccccccCCCCCCEEEccCCcC
Q 016686 234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~ 286 (384)
++|+++. .|.+++.+++|+.|.+.+|+++-. +|..++.+..|+.+..++|.+
T Consensus 276 SrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 276 SRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 6665554 455555555666665555554432 344555555555555555544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1e-27 Score=209.66 Aligned_cols=341 Identities=20% Similarity=0.192 Sum_probs=203.4
Q ss_pred CCCcEEEccCCCCCCCC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 3 PRLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
..++.++.++|.+..++ .+..++.++-.+|+|..+|.+++++.++..+++.+|.++..++... +|..|++|+..
T Consensus 114 ~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~ 191 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI--AMKRLKHLDCN 191 (565)
T ss_pred hhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH--HHHHHHhcccc
Confidence 34555556666554332 4555566666666666666666666666666666666655555432 35556666666
Q ss_pred cCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686 79 NSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 79 ~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 157 (384)
.|.+..+ +.++.+.+|..|++..|.+. ..| .|..+ ..|.+++++.|++. ..+.+..++++++..||++.|++. .
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence 5555555 45555555666666666555 233 44444 55566666665554 344444456666666666666665 4
Q ss_pred HHHhhhCCCCccEEEeeCCcCCcchhhccc--------chhhh----------------hhH------------------
Q 016686 158 AISYMSMMPSLKFIDISNTDIKGFIQQVGA--------ETDLV----------------LSL------------------ 195 (384)
Q Consensus 158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--------~~~~~----------------~~~------------------ 195 (384)
.|+.++.+.+|..||+++|.+++.++..+. ..|++ +.+
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 455566666666666666666654332110 00111 111
Q ss_pred ---------HhhcCCCCCCEEEccCCCCCcccccccc--cCCCCcEEEcCCCCCC-----------------------hh
Q 016686 196 ---------TALQNLNHLERLNLEQTQVSDATLFPLS--TFKELIHLSLRNASLT-----------------------DV 241 (384)
Q Consensus 196 ---------~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~i~-----------------------~~ 241 (384)
+......+.+.|++++-+++.++...|. +-.-+...++++|++. +.
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcccc
Confidence 1111223455566666555554333332 1122455566666543 33
Q ss_pred hHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCC
Q 016686 242 SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNG 321 (384)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~ 321 (384)
+|..++.+++|..|++++|.+.+ .|..++.+-.|+.++++.|+|.. .+.++.....++ .+-.+.|++..
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr~---lP~~~y~lq~lE-------tllas~nqi~~ 495 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFRM---LPECLYELQTLE-------TLLASNNQIGS 495 (565)
T ss_pred chHHHHhhhcceeeecccchhhh-cchhhhhhhhhheeccccccccc---chHHHhhHHHHH-------HHHhccccccc
Confidence 56677788999999999999887 66677777789999999998733 333444444444 33445677765
Q ss_pred CCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686 322 PSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS 368 (384)
Q Consensus 322 ~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~ 368 (384)
.-|..+..++++ +|.+. .||..+ ++|++|+.|++++|+|.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~L------gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPIL------GNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhh------ccccceeEEEecCCccC
Confidence 555558888877 66666 689999 99999999999999997
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.1e-26 Score=203.13 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=194.1
Q ss_pred CCcEEEccCCCCCC----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 4 RLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 4 ~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
-++.+.+++|.+.. +.++..+..+++.+|+...+|++++.+..++.+++++|.+..+++... .++.|..++.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~--s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIG--SLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHh--hhhhhhhhhccc
Confidence 35667788887765 447778888888888888888888888888888888888888887654 778888888888
Q ss_pred CCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
|.+... +.++.+-.++.++..+|+++ ..|..+..+ .++..+++.+|++....+..+ .++.|++|+...|.++ ..
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~-~~l~~l~~~~n~l~~l~~~~i--~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNL-SKLSKLDLEGNKLKALPENHI--AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccc-cCchHHHHH-HHHHHhhccccchhhCCHHHH--HHHHHHhcccchhhhh-cC
Confidence 887766 67778888888888888888 567777777 788888888888876655554 3778888888777665 56
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
|..++.+.+|..|++..|++...+ .|.+|..|++|+++.|++.-........++++.+|++..|++
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lP--------------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLP--------------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCC--------------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 677888888888888888877543 366677777777777776654444444677777777777777
Q ss_pred ChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
++ .|..+..+.+|+.|++++|.|++ .|..++++ +|+.|.+.+|++
T Consensus 265 ke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 265 KE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 76 46666667777777777777776 45566666 777777777765
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=4.7e-24 Score=204.21 Aligned_cols=328 Identities=19% Similarity=0.217 Sum_probs=201.2
Q ss_pred CCcEEEccCCCCCCCC----CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 4 RLSFLNLAWTGVTKLP----NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~----~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
+|+.||+++|.+.++| .+.+|+.|.++.|.|..+|....++.+|+++.|.+|.+...|..+. .+.+|+.|+++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~--~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS--ELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH--hhhcccccccch
Confidence 5889999999988866 5668888888888888888777788888888888888887776543 778888888888
Q ss_pred CCCCCcc-cccCCCC-------------------ccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHH--
Q 016686 80 SSLSRFC-FLTQMKA-------------------LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL-- 137 (384)
Q Consensus 80 n~l~~~~-~~~~~~~-------------------L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-- 137 (384)
|.+..++ .+..+.. ++.+++..|.+.+.++..+..+ .. .++|.+|.+.......+
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~--~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-TH--QLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-he--eeecccchhhhhhhhhccc
Confidence 8776552 1111111 3333333333333333333222 11 24444444331100000
Q ss_pred ------------------------------------HhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 138 ------------------------------------AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 138 ------------------------------------~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
.....+|+.++++.|.+.+. |.|++.+.+|+.+++..|+++..
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~l 279 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVAL 279 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhh
Confidence 00112455555555555533 36666777777777777776543
Q ss_pred hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc---------------
Q 016686 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL--------------- 246 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------- 246 (384)
+.. +...++|+.+.+..|.+.. +|+...+.++|++|+|..|++.......+
T Consensus 280 p~r-------------i~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 280 PLR-------------ISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred HHH-------------HhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 322 3334445555555555544 33444455666666666666554321111
Q ss_pred ----------cCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686 247 ----------SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ 316 (384)
Q Consensus 247 ----------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 316 (384)
...+.|+.|.+.+|.+++.....+....+||.|+|++|++.+. +.....+++.++ .+.+++
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f--pas~~~kle~Le-------eL~LSG 416 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF--PASKLRKLEELE-------ELNLSG 416 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC--CHHHHhchHHhH-------HHhccc
Confidence 1234577778888888887777777788888888888887543 344455666666 778888
Q ss_pred cccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686 317 IGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 369 (384)
Q Consensus 317 n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~ 369 (384)
|.++ .+|+.+..++.+ .|++. ..|+ + .++++|+.+|++.|.++.
T Consensus 417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe-~------~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPE-L------AQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred chhh-hhhHHHHhhhhhHHHhhcCCcee-echh-h------hhcCcceEEecccchhhh
Confidence 8887 677888887777 66666 3463 3 367777777777777654
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-23 Score=182.79 Aligned_cols=286 Identities=19% Similarity=0.161 Sum_probs=208.2
Q ss_pred EccCCCCCCCC-CCC-CCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec-CCCCC
Q 016686 9 NLAWTGVTKLP-NIS-SLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN-SSLSR 84 (384)
Q Consensus 9 ~l~~n~i~~l~-~~~-~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~-n~l~~ 84 (384)
+-++-+++.+| ++| ...+++|..|.|+.||+..| .+++|++|||++|.|+.+.+. +|..++.|..|.+-+ |+|+.
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchhh
Confidence 34444555666 444 67889999999999988887 889999999999999988776 577888877766655 88888
Q ss_pred c--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC-ChH----
Q 016686 85 F--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI-DDY---- 157 (384)
Q Consensus 85 ~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i-~~~---- 157 (384)
+ ..|..+..++.|.+..|++.-...+.+..+ +++..|.+.+|.+....-..+ ..+..++.+.+..|.+ .+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL-~~l~lLslyDn~~q~i~~~tf-~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQSICKGTF-QGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh-hhcchhcccchhhhhhccccc-cchhccchHhhhcCccccccccch
Confidence 8 578888888999898888887778888888 899999999888763322232 4567777777776662 111
Q ss_pred -------HHHhhhCCCCccEEEeeCCcCCcchhhcc------------cchhhh--hhHHhhcCCCCCCEEEccCCCCCc
Q 016686 158 -------AISYMSMMPSLKFIDISNTDIKGFIQQVG------------AETDLV--LSLTALQNLNHLERLNLEQTQVSD 216 (384)
Q Consensus 158 -------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~------------~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~ 216 (384)
.+-.+++..-.....+.+.++....+.-| .+..+. .-...|..+++|+.+++++|++++
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 11111111111111111111111100000 000000 001268899999999999999999
Q ss_pred ccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686 217 ATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 217 ~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
+-..+|.+...++.|.|.+|++..+...+|.+++.|+.|++.+|+|+...+..|....+|.+|.+-.|++.+.+.+..+.
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~ 368 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLG 368 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHH
Confidence 98889999999999999999999988889999999999999999999999999999999999999999998877765544
Q ss_pred H
Q 016686 297 K 297 (384)
Q Consensus 297 ~ 297 (384)
.
T Consensus 369 ~ 369 (498)
T KOG4237|consen 369 E 369 (498)
T ss_pred H
Confidence 3
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=4.9e-22 Score=190.51 Aligned_cols=264 Identities=23% Similarity=0.298 Sum_probs=213.3
Q ss_pred CCCcEEEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 3 PRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
++|+.|+.+.|.+..+ +...+|++++++.|++..+|+++..+.+|+.+...+|.++.++.... .+.+|+.|.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhh
Confidence 4566666666665532 34558999999999999999888899999999999999988876543 678999999999
Q ss_pred CCCCCc-ccccCCCCccEEEeeCCCCCchhHHH-HHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686 80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 157 (384)
|.+..+ +.....++|++|++..|.+.. .|+. +......++.++.+.|.+.... ..-....+.|+.|++.+|.+++.
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCccccc
Confidence 998888 455669999999999999984 4443 3333134778888888776432 11112457899999999999988
Q ss_pred HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686 158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 237 (384)
Q Consensus 158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 237 (384)
....+..++.|+.|++++|++..++.. .+.++..|+.|++++|.++. +|..+..+..|++|...+|+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas------------~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPAS------------KLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHH------------HHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCc
Confidence 878889999999999999999887666 78899999999999999998 56888899999999999999
Q ss_pred CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (384)
+... | .+..++.|+.+|++.|.++......-.+.+.|++||+++|.
T Consensus 442 l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 442 LLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eeec-h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9874 4 78899999999999999987654433344899999999997
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=1.3e-19 Score=165.74 Aligned_cols=188 Identities=26% Similarity=0.329 Sum_probs=86.5
Q ss_pred CCCCccEEEeeCCCCCchhHHHHHhccCC---ccEEEccCCCCCchHHHH---HHhCC-CCCCEEeccCCCCCh----HH
Q 016686 90 QMKALEHLDLSSSMIGDDSVEMVACVGAN---LRNLNLSNTRFSSAGVGI---LAGHL-PNLEILSLSGTQIDD----YA 158 (384)
Q Consensus 90 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~---L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~l~~n~i~~----~~ 158 (384)
.+++|++|++++|.+....+..+..+ .. |+.|++++|+++...... ....+ ++|++|++++|.+++ ..
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 34445555555554443333333333 22 555555555544222111 11223 455555555555542 12
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc----cccccCCCCcEEEcC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLR 234 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~ 234 (384)
...+..++.|++|++++|.+.+..... ..+.+..+++|+.|++++|.+++... ..+..+++|++|+++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~--------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRA--------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHH--------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 223344455555555555554321100 00023334556666666655543322 223345556666666
Q ss_pred CCCCChhhHHhcc-----CCCCCCEEEccCCccCcccc----ccccCCCCCCEEEccCCcC
Q 016686 235 NASLTDVSLHQLS-----SLSKLTNLSIRDAVLTNSGL----GSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 235 ~n~i~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~~ 286 (384)
+|.+++.....+. ..+.|++|++++|.+++.+. ..+...++|+++++++|.+
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 6666543332222 12566666666666653222 2333345666666666666
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.2e-19 Score=190.42 Aligned_cols=321 Identities=18% Similarity=0.175 Sum_probs=207.6
Q ss_pred CCCCcEEEccCCCCC-----------CCCCC-CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCC
Q 016686 2 FPRLSFLNLAWTGVT-----------KLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIET 69 (384)
Q Consensus 2 l~~L~~L~l~~n~i~-----------~l~~~-~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 69 (384)
+++|+.|.+..+... ++..+ ++|+.|.+.++.+..+|..+ ...+|++|+++++.+..++.. +..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~--~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG--VHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc--cccC
Confidence 567888887655321 12233 36888999888888888766 578899999999888877654 3478
Q ss_pred CCccEEEeecCC-CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEe
Q 016686 70 SLLSFLDVSNSS-LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 148 (384)
Q Consensus 70 ~~L~~L~ls~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 148 (384)
++|+.|+++++. +..++.+..+++|+.|++++|.....+|..+..+ ++|+.|++++|..-...|..+ .+++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L-~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL-NKLEDLDMSRCENLEILPTGI--NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc-CCCCEEeCCCCCCcCccCCcC--CCCCCCEEe
Confidence 899999998764 5566778888999999999887666778888888 899999999875333444332 578899999
Q ss_pred ccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCc-------ccccc
Q 016686 149 LSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD-------ATLFP 221 (384)
Q Consensus 149 l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~ 221 (384)
+++|......|. ...+|+.|++++|.+...+.. + .+++|+.|++.++.... ..+..
T Consensus 711 Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~-------------~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 711 LSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN-------------L-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCCCCcccccc---ccCCcCeeecCCCcccccccc-------------c-cccccccccccccchhhccccccccchhh
Confidence 988865433332 245788889988887654322 1 45666666666532111 11111
Q ss_pred cccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCC
Q 016686 222 LSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 301 (384)
Q Consensus 222 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 301 (384)
...+++|+.|++++|.....+|..++++++|+.|++++|..-+..|..+ .+++|+.|++++|..... +. ...++
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~--~p---~~~~n 847 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT--FP---DISTN 847 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc--cc---ccccc
Confidence 2234677788887776666667777778888888887765333344443 567778888877754220 00 01112
Q ss_pred ceeecccccccCCCccccCCCCCCchhhhhhh-------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccc
Q 016686 302 IEVWHELSVICPSDQIGSNGPSPSRTSLRASL-------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSS 366 (384)
Q Consensus 302 l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l-------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~ 366 (384)
++ .+.+++|.+. .+|.++..++++ .+.+. .+|..+ ..+++|+.+++++|.
T Consensus 848 L~-------~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~------~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 IS-------DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNI------SKLKHLETVDFSDCG 904 (1153)
T ss_pred cC-------EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccc------ccccCCCeeecCCCc
Confidence 22 4566666665 467666666655 24444 345554 455566666666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.4e-19 Score=176.31 Aligned_cols=247 Identities=19% Similarity=0.159 Sum_probs=135.3
Q ss_pred CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686 5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 82 (384)
Q Consensus 5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l 82 (384)
-..|+++++.++.+|. .++|+.|++++|+++.+|.. .++|++|++++|.++.++.. .++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-----p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-----PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-----ccccceeeccCCch
Confidence 4567777777777763 24677788888777776642 46777888887777766531 25677777777776
Q ss_pred CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686 83 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 162 (384)
Q Consensus 83 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l 162 (384)
..++.+ ..+|+.|++++|+++. +|. .. ++|+.|++++|++.+. +. ....|+.|++++|.++.. |.
T Consensus 275 ~~Lp~l--p~~L~~L~Ls~N~Lt~-LP~---~p-~~L~~LdLS~N~L~~L-p~----lp~~L~~L~Ls~N~L~~L-P~-- 339 (788)
T PRK15387 275 THLPAL--PSGLCKLWIFGNQLTS-LPV---LP-PGLQELSVSDNQLASL-PA----LPSELCKLWAYNNQLTSL-PT-- 339 (788)
T ss_pred hhhhhc--hhhcCEEECcCCcccc-ccc---cc-cccceeECCCCccccC-CC----CcccccccccccCccccc-cc--
Confidence 655432 2456677777777663 332 12 5677777777766642 11 123455666666665532 21
Q ss_pred hCCCCccEEEeeCCcCCcchhhc--c----cchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686 163 SMMPSLKFIDISNTDIKGFIQQV--G----AETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236 (384)
Q Consensus 163 ~~~~~L~~L~l~~n~l~~~~~~~--~----~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 236 (384)
...+|+.|++++|++++.++.. . ...|.+..++. ...+|+.|++++|.+++. |.. .++|+.|++++|
T Consensus 340 -lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N 412 (788)
T PRK15387 340 -LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSL-PVL---PSELKELMVSGN 412 (788)
T ss_pred -cccccceEecCCCccCCCCCCCcccceehhhccccccCcc--cccccceEEecCCcccCC-CCc---ccCCCEEEccCC
Confidence 1135666666666665432110 0 00011111111 113456666666655542 221 245666666666
Q ss_pred CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
.+++ +|.. ..+|+.|++++|+++. .|..+..++.|+.|++++|++
T Consensus 413 ~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 413 RLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCC
Confidence 6554 2221 2345556666666653 455555566666666666665
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=5.6e-19 Score=161.47 Aligned_cols=280 Identities=23% Similarity=0.243 Sum_probs=182.3
Q ss_pred EeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCC------chhHHHHHhccC
Q 016686 50 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIG------DDSVEMVACVGA 117 (384)
Q Consensus 50 L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~------~~~~~~~~~~~~ 117 (384)
|+|.++.+++......+..++.|++|+++++.++.. ..+...+.+++++++++.+. ...+..+..+ +
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~-~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG-C 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc-C
Confidence 445555544221111233455566666666665332 23445556777777766655 2344566666 8
Q ss_pred CccEEEccCCCCCchHHHHHHhCC---CCCCEEeccCCCCChHH----HHhhhCC-CCccEEEeeCCcCCcchhhcccch
Q 016686 118 NLRNLNLSNTRFSSAGVGILAGHL---PNLEILSLSGTQIDDYA----ISYMSMM-PSLKFIDISNTDIKGFIQQVGAET 189 (384)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~l---~~L~~L~l~~n~i~~~~----~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~ 189 (384)
+|+.|++++|.+....+..+ ..+ ++|++|++++|.+++.. ...+..+ ++|+.|++++|.+++.....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~---- 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA---- 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH----
Confidence 99999999999876554443 233 44999999999988433 3345566 89999999999998532210
Q ss_pred hhhhhHHhhcCCCCCCEEEccCCCCCccc----ccccccCCCCcEEEcCCCCCChhh----HHhccCCCCCCEEEccCCc
Q 016686 190 DLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l~~n~ 261 (384)
....+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++.. ...+..+++|++|++++|.
T Consensus 157 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 157 ----LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred ----HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 0114667789999999999998542 334456679999999999998654 3456678999999999999
Q ss_pred cCccccccccC-----CCCCCEEEccCCcCCCHHHHHHH---HHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686 262 LTNSGLGSFKP-----PRSLKLLDLHGGWLLTEDAILQF---CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 333 (384)
Q Consensus 262 l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l 333 (384)
+++.....+.. .+.|++|++++|.+. ..+...+ ...++.++ .++++.|.++..-...+..
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~~~~~L~-------~l~l~~N~l~~~~~~~~~~---- 300 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDIT-DDGAKDLAEVLAEKESLL-------ELDLRGNKFGEEGAQLLAE---- 300 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCC-cHHHHHHHHHHhcCCCcc-------EEECCCCCCcHHHHHHHHH----
Confidence 98754443322 379999999999984 3333333 33344444 6788888776432221111
Q ss_pred hhhcCCCCCCchhhHHhhhhh-cHHHHHhhhcccc
Q 016686 334 VKQKQDPMPMSHSFLDQRLKY-SREELLELQYSSL 367 (384)
Q Consensus 334 ~n~l~~~ip~~~~~~~~~~~~-~~L~~L~l~~n~l 367 (384)
..... +.++.+++.+|+|
T Consensus 301 ----------------~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 ----------------SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ----------------HHhhcCCchhhcccCCCCC
Confidence 11233 5788888888765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=2.3e-19 Score=176.39 Aligned_cols=259 Identities=17% Similarity=0.112 Sum_probs=187.9
Q ss_pred CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686 22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 101 (384)
Q Consensus 22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~ 101 (384)
..-..|+++.+.++.+|..+. ++|+.|++++|.++.++. ..++|++|++++|+++.++.+ .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccCcccCc--ccccceeeccC
Confidence 346789999999999998776 589999999999998764 248999999999999988643 57899999999
Q ss_pred CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
|.+. .+|.. . .+|+.|++++|+++.. +. ..++|+.|++++|.+.+. |. ...+|+.|++++|.+++.
T Consensus 272 N~L~-~Lp~l---p-~~L~~L~Ls~N~Lt~L-P~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 272 NPLT-HLPAL---P-SGLCKLWIFGNQLTSL-PV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 337 (788)
T ss_pred Cchh-hhhhc---h-hhcCEEECcCCccccc-cc----cccccceeECCCCccccC-CC---CcccccccccccCccccc
Confidence 9987 34432 2 6789999999998853 32 357899999999998853 22 234688999999998764
Q ss_pred hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 261 (384)
+ . ...+|+.|++++|++++. |.. .++|+.|++++|++++ +|.. .++|+.|++++|.
T Consensus 338 P-~---------------lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~ 393 (788)
T PRK15387 338 P-T---------------LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNR 393 (788)
T ss_pred c-c---------------cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCc
Confidence 2 2 124799999999999874 332 3568888888888886 3432 3578889999888
Q ss_pred cCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hh
Q 016686 262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VK 335 (384)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n 335 (384)
++.. |.. .++|+.|++++|++.+.+. .. ..+. .+++++|+++ .+|..+..++.+ +|
T Consensus 394 Lt~L-P~l---~s~L~~LdLS~N~LssIP~---l~---~~L~-------~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 394 LTSL-PVL---PSELKELMVSGNRLTSLPM---LP---SGLL-------SLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ccCC-CCc---ccCCCEEEccCCcCCCCCc---ch---hhhh-------hhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 8863 322 2578888888888743211 11 1122 4566777776 567777666655 66
Q ss_pred hcCCCCCCch
Q 016686 336 QKQDPMPMSH 345 (384)
Q Consensus 336 ~l~~~ip~~~ 345 (384)
.+++.+|..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 6665555443
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2.3e-17 Score=173.31 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686 143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 222 (384)
Q Consensus 143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (384)
+|+.|++++|......|..+..+++|+.|++++|...+.+|. .. .+++|+.|++++|..-...|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------~~-~L~sL~~L~Ls~c~~L~~~p~-- 843 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------GI-NLESLESLDLSGCSRLRTFPD-- 843 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------CC-CccccCEEECCCCCccccccc--
Confidence 455555555443334445555555555555555543223332 11 455566666665532222222
Q ss_pred ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc-cCccccccccCCCCCCEEEccCCcC
Q 016686 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
..++|+.|++++|.++. +|..+..+++|+.|++++|. ++. .+..+..+++|+.+++++|.-
T Consensus 844 -~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 844 -ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred -cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcc
Confidence 12456677777776665 46667777777777777743 443 444556667777777777753
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.9e-18 Score=167.90 Aligned_cols=245 Identities=16% Similarity=0.159 Sum_probs=187.9
Q ss_pred CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686 3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
.+...|++++++++.+|. .++++.|++++|+++.+|..++ ++|++|++++|.++.++..+. ++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP----DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh----ccccEEECcCC
Confidence 356789999999998884 3589999999999999988765 589999999999998876532 57999999999
Q ss_pred CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686 81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 160 (384)
Q Consensus 81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 160 (384)
.+..++.. ...+|+.|++++|.+. .+|..+. ++|+.|++++|.++.. +..+ .++|+.|++++|.++.. |.
T Consensus 252 ~L~~LP~~-l~s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~Lt~L-P~ 321 (754)
T PRK15370 252 RITELPER-LPSALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNSLTAL-PE 321 (754)
T ss_pred ccCcCChh-HhCCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-cccc---hhhHHHHHhcCCccccC-Cc
Confidence 98877421 1257999999999998 4565432 6899999999998853 3222 24789999999988743 33
Q ss_pred hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686 161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240 (384)
Q Consensus 161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~ 240 (384)
.+ .++|+.|++++|.++..... + .++|+.|++++|+++. +|..+ .+.|++|++++|.++.
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~LP~~-------------l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTSLPAS-------------L--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred cc--cccceeccccCCccccCChh-------------h--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence 22 36899999999998875322 2 2689999999999886 34444 3689999999999987
Q ss_pred hhHHhccCCCCCCEEEccCCccCcccccc----ccCCCCCCEEEccCCcCC
Q 016686 241 VSLHQLSSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 241 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~ 287 (384)
. |..+. ..|+.|++++|+++. .|.. ....+.+..+++.+|++.
T Consensus 382 L-P~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 L-PENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred C-CHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4 44443 468999999999885 3433 334478899999999983
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=2.5e-18 Score=169.92 Aligned_cols=250 Identities=16% Similarity=0.165 Sum_probs=183.7
Q ss_pred CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686 22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 101 (384)
Q Consensus 22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~ 101 (384)
.+...|++++++++.+|..+. ++|+.|++++|.++.++..+. ++|+.|++++|.++.++. ....+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPA-TLPDTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccccCCh-hhhccccEEECcC
Confidence 367889999999998887664 579999999999998876542 689999999999887742 1135799999999
Q ss_pred CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
|.+. .+|..+. .+|+.|++++|++.. .+..+ .++|+.|++++|.++.. |..+ .++|+.|++++|.+...
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l---~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKISC-LPENL---PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccCc-ccccc---CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccccC
Confidence 9988 4565543 689999999999884 34333 35899999999988743 3333 24788999999998865
Q ss_pred hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 261 (384)
+.. + .++|+.|++++|.+++. |..+ +++|+.|++++|+++. +|..+. ++|++|++++|.
T Consensus 320 P~~-------------l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~ 378 (754)
T PRK15370 320 PET-------------L--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNA 378 (754)
T ss_pred Ccc-------------c--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCc
Confidence 332 1 26899999999998874 4444 3789999999999886 454443 689999999999
Q ss_pred cCccccccccCCCCCCEEEccCCcCCCHHH-HHHHHHhCCCceeecccccccCCCccccC
Q 016686 262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDA-ILQFCKMHPRIEVWHELSVICPSDQIGSN 320 (384)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~n~~~ 320 (384)
++.. |..+. ..|+.|++++|++...+. +..+....+.+. .+.+.+|.++
T Consensus 379 Lt~L-P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~-------~L~L~~Npls 428 (754)
T PRK15370 379 LTNL-PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPT-------RIIVEYNPFS 428 (754)
T ss_pred CCCC-CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCcc-------EEEeeCCCcc
Confidence 9864 43332 478999999999854322 333333334443 4567777766
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=3.4e-19 Score=156.23 Aligned_cols=245 Identities=19% Similarity=0.196 Sum_probs=184.1
Q ss_pred CCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccC-CCCCchhHHhhhcCCCCccEEE
Q 016686 4 RLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAG-TTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
.-.+++|..|+|+.|| .+++|++|||++|.|+.|.++.| .++.|.+|-+.+ |.|+.++.. .|..+..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHh
Confidence 3467899999999876 78899999999999998755555 888888887776 899999877 588899999999
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCC------c------hHHHHHHhCCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFS------S------AGVGILAGHLP 142 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~------~------~~~~~~~~~l~ 142 (384)
+.-|.+.-+ ..+..++++..|.+.+|.+....-..+..+ ..++.+++..|.+. . ..+..+ +...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~~a~~~iet-sgar 224 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADDLAMNPIET-SGAR 224 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhHHhhchhhc-ccce
Confidence 888887666 678888888888888888774333356666 67777777766521 0 000000 0000
Q ss_pred ----------------------CCCEE---eccCC-CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686 143 ----------------------NLEIL---SLSGT-QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196 (384)
Q Consensus 143 ----------------------~L~~L---~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 196 (384)
.++.+ ..+.+ .........|..+++|+++++++|++++.-+.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~------------ 292 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG------------ 292 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh------------
Confidence 11211 11122 22222345688899999999999999988777
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 263 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~ 263 (384)
+|.....++.|.+..|++..+-...|.+++.|++|+|.+|+|+...|.+|....+|.+|++-.|.+.
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 6888999999999999988876677888999999999999999999999999999999998887753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-17 Score=128.07 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=123.5
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEE
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD 98 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~ 98 (384)
++.+++.|.+|+|+++.+|+.+..+.+|+.|++++|+++..|..+. .+++|+.|++.-|++... ..|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is--sl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS--SLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh--hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 5667788888888888888888888888888888888888877644 788888888888877666 4788888888888
Q ss_pred eeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686 99 LSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177 (384)
Q Consensus 99 L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 177 (384)
+.+|.+.. ..|..|..+ ..|+.|++++|.+.- .|..+ +.+++|+.|.+..|.+- ..|..++.++.|++|.+.+|+
T Consensus 109 ltynnl~e~~lpgnff~m-~tlralyl~dndfe~-lp~dv-g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYM-TTLRALYLGDNDFEI-LPPDV-GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHH-HHHHHHHhcCCCccc-CChhh-hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 88887754 466667667 788888888888763 34443 67888888888888765 456778888888888888888
Q ss_pred CCcchhh
Q 016686 178 IKGFIQQ 184 (384)
Q Consensus 178 l~~~~~~ 184 (384)
++-.+|.
T Consensus 185 l~vlppe 191 (264)
T KOG0617|consen 185 LTVLPPE 191 (264)
T ss_pred eeecChh
Confidence 8765554
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=3.1e-14 Score=123.61 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=88.9
Q ss_pred CCCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686 140 HLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 215 (384)
Q Consensus 140 ~l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 215 (384)
.-+.|+++....|++.+. ....|...+.|+.+.+..|.+....... -...+..+++|+.||+.+|.++
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a--------l~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA--------LAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH--------HHHHHHhCCcceeeecccchhh
Confidence 345788888877776532 2344556677888888887765331110 0115677788888888888776
Q ss_pred ccc----ccccccCCCCcEEEcCCCCCChhhHHhc-----cCCCCCCEEEccCCccCcccccc----ccCCCCCCEEEcc
Q 016686 216 DAT----LFPLSTFKELIHLSLRNASLTDVSLHQL-----SSLSKLTNLSIRDAVLTNSGLGS----FKPPRSLKLLDLH 282 (384)
Q Consensus 216 ~~~----~~~l~~~~~L~~L~L~~n~i~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~ 282 (384)
... ...++.+++|+.+++++|.+......++ ...|.|+.+.+.+|.|+...... +...+.|..|+|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 543 3345567778888888887765443333 24677888888888777654332 2334778888888
Q ss_pred CCcC
Q 016686 283 GGWL 286 (384)
Q Consensus 283 ~n~~ 286 (384)
+|++
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 8876
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.7e-17 Score=126.17 Aligned_cols=158 Identities=14% Similarity=0.248 Sum_probs=107.7
Q ss_pred hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCC
Q 016686 40 GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGAN 118 (384)
Q Consensus 40 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 118 (384)
+++++.+++.|.+|+|.++.+++..+ .+.+|+.|++++|+|... ..++++++|++|+++.|.+. ..|..|+.+ |.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia--~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~-p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIA--ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF-PA 103 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHH--HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCC-ch
Confidence 55678888888888888888887655 788888888888888777 57788888888888888776 567777777 78
Q ss_pred ccEEEccCCCCCc-hHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686 119 LRNLNLSNTRFSS-AGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197 (384)
Q Consensus 119 L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 197 (384)
|+.|+++.|++.. ..|..|+ .+..|+.|+++.|.+. ..|..++.+++|+.|.+..|.+...+. .
T Consensus 104 levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpk-------------e 168 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPK-------------E 168 (264)
T ss_pred hhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcH-------------H
Confidence 8888887777653 2344443 2456666666666654 445556666666666666665544322 2
Q ss_pred hcCCCCCCEEEccCCCCCc
Q 016686 198 LQNLNHLERLNLEQTQVSD 216 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~ 216 (384)
++.++.|+.|++.+|+++-
T Consensus 169 ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHHhcccceeee
Confidence 4455555555555555554
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-13 Score=119.53 Aligned_cols=235 Identities=21% Similarity=0.218 Sum_probs=170.6
Q ss_pred CCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCCCC----chhHHh-----hhcCCCCccEEEeecCCCCCc
Q 016686 20 NISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFI----NEREAF-----LYIETSLLSFLDVSNSSLSRF 85 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~-----~~~~l~~L~~L~ls~n~l~~~ 85 (384)
.+..++.+++++|.+.. +...+.+.+.|++.++++---. .+++.+ .+..+|+|+.++||.|-+..-
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 57788999999998862 5555557778888888864222 233322 233678999999999976433
Q ss_pred ------ccccCCCCccEEEeeCCCCCchhHHHHHh------------ccCCccEEEccCCCCCch---HHHHHHhCCCCC
Q 016686 86 ------CFLTQMKALEHLDLSSSMIGDDSVEMVAC------------VGANLRNLNLSNTRFSSA---GVGILAGHLPNL 144 (384)
Q Consensus 86 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------~~~~L~~L~L~~n~l~~~---~~~~~~~~l~~L 144 (384)
..+.++..|++|.|.+|++....-..++. ..+.|+.+..+.|++... .....++..+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 45677889999999999886433332221 117899999999987543 344445667899
Q ss_pred CEEeccCCCCCh----HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc
Q 016686 145 EILSLSGTQIDD----YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 220 (384)
Q Consensus 145 ~~L~l~~n~i~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 220 (384)
+.+.+..|.|.. .....+..++.|+.||+..|.++.......+ ..+..+++|+.+++++|.+......
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La--------kaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA--------KALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH--------HHhcccchheeecccccccccccHH
Confidence 999999998753 3346677999999999999998754332111 1567788999999999988876555
Q ss_pred ccc-----cCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCcc
Q 016686 221 PLS-----TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVL 262 (384)
Q Consensus 221 ~l~-----~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l 262 (384)
++. ..+.|+.+.+.+|.|+.. ....+...+.|+.|++++|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 443 578999999999999754 333456689999999999999
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7e-14 Score=124.76 Aligned_cols=185 Identities=25% Similarity=0.314 Sum_probs=80.8
Q ss_pred CCCCccEEEeecCCCCCc----ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccEEEccCCCCCchHHHHHHhCCC
Q 016686 68 ETSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGILAGHLP 142 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 142 (384)
.||+++.|+|+.|-+..+ .....+|+|+.|+++.|.+..-.-... ..+ +.|+.|.+++|.++......+...+|
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l-~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL-SHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh-hhhheEEeccCCCCHHHHHHHHHhCC
Confidence 344445555554444333 223344445555555444321111100 012 45555555555555444444444455
Q ss_pred CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686 143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 222 (384)
Q Consensus 143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (384)
+|+.|++.+|...........-+..|+.|+|++|.+...... ...+.++.|+.|.++.+.+.+......
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----------~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----------YKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----------cccccccchhhhhccccCcchhcCCCc
Confidence 555555555531111111112234455555555554433211 024445555555555555544321111
Q ss_pred ------ccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCc
Q 016686 223 ------STFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 223 ------~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
..+++|++|++..|+|.+. ....+..+++|++|.+..|.+..
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 2445566666666655332 11233344555555555555543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.4e-14 Score=124.59 Aligned_cols=212 Identities=23% Similarity=0.255 Sum_probs=139.6
Q ss_pred CCCCCcEEEccCCCchhHH--hhCcCCCCccEEeccCCCCCchhHHhhh-cCCCCccEEEeecCCCCCc---ccccCCCC
Q 016686 20 NISSLECLNLSNCTIDSIL--EGNENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF---CFLTQMKA 93 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~---~~~~~~~~ 93 (384)
++++|+.+.+.++.+...+ .....|++++.|+||.|-+....+...+ ..+|+|+.|+++.|.+... ..-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 6778888888888776544 2444788888888888888765544333 3578888888888876544 12225677
Q ss_pred ccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCc-hHHHHHHhCCCCCCEEeccCCCCChHH-HHhhhCCCCccE
Q 016686 94 LEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSS-AGVGILAGHLPNLEILSLSGTQIDDYA-ISYMSMMPSLKF 170 (384)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~~~~L~~ 170 (384)
|+.|.+++|+++-.-..++...+|+|+.|++.+|. +.. .... ..++.|++|+|++|.+-+.. ......++.|+.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~---~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST---KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh---hhhhHHhhccccCCcccccccccccccccchhh
Confidence 88888888888855444433333888889888884 221 1122 23567888888888765332 134457788888
Q ss_pred EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-ccccccCCCCcEEEcCCCCCCh
Q 016686 171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPLSTFKELIHLSLRNASLTD 240 (384)
Q Consensus 171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~i~~ 240 (384)
|+++.+.+.+..... +........+++|++|++..|++.+.. ...+..+++|+.+.+..|.+..
T Consensus 276 Lnls~tgi~si~~~d------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPD------VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCC------ccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 888888876542110 001112346788999999998886542 2345567778888888887754
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=2.7e-12 Score=104.56 Aligned_cols=135 Identities=24% Similarity=0.252 Sum_probs=40.2
Q ss_pred ccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc
Q 016686 10 LAWTGVTKLP---NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 85 (384)
Q Consensus 10 l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 85 (384)
++.+.|+.++ ++.++++|++.+|.|+.+. .+. .+.+|+.|++++|.++.+.. +..++.|++|++++|.|+.+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-
T ss_pred cccccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCcc
Confidence 3444455444 3445677777777777653 444 56677777777777776542 33667777777777777666
Q ss_pred c-cc-cCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCch--HHHHHHhCCCCCCEEec
Q 016686 86 C-FL-TQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSA--GVGILAGHLPNLEILSL 149 (384)
Q Consensus 86 ~-~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~l 149 (384)
. .+ ..+++|++|++++|.|... ....+..+ ++|+.|++.+|.++.. .-..+...+|+|+.||-
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 2 33 3467777777777766531 22345555 7777777777766432 12223345777777764
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=1.5e-12 Score=106.03 Aligned_cols=141 Identities=28% Similarity=0.348 Sum_probs=46.1
Q ss_pred ccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchh
Q 016686 29 LSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDS 108 (384)
Q Consensus 29 ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 108 (384)
++.+.|..++. ..+..++++|+|++|.|+.+..- . ..+.+|+.|++++|.|..++.+..++.|+.|++++|.++...
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L-~-~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENL-G-ATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ---------------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred ccccccccccc-cccccccccccccccccccccch-h-hhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence 44455555543 23556788999999988876532 1 146788999999999988888888889999999999888543
Q ss_pred HHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH---HHHhhhCCCCccEEEe
Q 016686 109 VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY---AISYMSMMPSLKFIDI 173 (384)
Q Consensus 109 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~---~~~~l~~~~~L~~L~l 173 (384)
......+ ++|+.|++++|+|.....-...+.+++|++|++.+|+++.. -...+..+|+|+.||-
T Consensus 81 ~~l~~~l-p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNL-PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH--TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cchHHhC-CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 3222346 88999999888875432212234678888888888876532 2233446677776664
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=109.68 Aligned_cols=294 Identities=23% Similarity=0.272 Sum_probs=189.2
Q ss_pred CcEEEccCCCCCC-------CCCCCCCcEEEccCCC-chh-HHhhCc-CCCCccEEeccCC-CCCchhHHhhhcCCCCcc
Q 016686 5 LSFLNLAWTGVTK-------LPNISSLECLNLSNCT-IDS-ILEGNE-NKAPLAKISLAGT-TFINEREAFLYIETSLLS 73 (384)
Q Consensus 5 L~~L~l~~n~i~~-------l~~~~~L~~L~ls~n~-i~~-~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~ 73 (384)
|+.|.+.++.-.. -.+||++++|.+.+|. |+. -...+. .+++|++|++..| .++...-...-..+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 5666666654222 1278888888888885 442 222333 7888888888874 455432221123578888
Q ss_pred EEEeecCC-CCCc---ccccCCCCccEEEeeCCCC-CchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEE
Q 016686 74 FLDVSNSS-LSRF---CFLTQMKALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 74 ~L~ls~n~-l~~~---~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L 147 (384)
+|+++++. |++- +...++..++.+.+.+|.- .......+....+.+.++++..+. ++......+...+..|+.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 88888874 4332 3455666667776666532 222222222221446666665653 6666555555567888999
Q ss_pred eccCCC-CChHHHHhhh-CCCCccEEEeeCCc-CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-cccc-
Q 016686 148 SLSGTQ-IDDYAISYMS-MMPSLKFIDISNTD-IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-LFPL- 222 (384)
Q Consensus 148 ~l~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l- 222 (384)
..+++. +++.....+. +..+|+.+-+++++ ++...-.. .-.+++.|+.+++..+...... ...+
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-----------l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-----------LGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-----------hhcCChhhhhhcccccceehhhhHhhhc
Confidence 887654 5555555555 67889999999886 33321110 1245788999999888543221 2222
Q ss_pred ccCCCCcEEEcCCCC-CChhhHHhc----cCCCCCCEEEccCCc-cCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686 223 STFKELIHLSLRNAS-LTDVSLHQL----SSLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 223 ~~~~~L~~L~L~~n~-i~~~~~~~l----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
.+|+.|+.+.+++|. +++..-..+ ..+..++.+.+++++ +++...+.+..++.|+.+++.+|+.++.+.+..+.
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~ 448 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA 448 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence 378999999999885 455433333 346678899999987 55556677888899999999999999999999999
Q ss_pred HhCCCceeecccc
Q 016686 297 KMHPRIEVWHELS 309 (384)
Q Consensus 297 ~~~~~l~~~~~~~ 309 (384)
+.+|++++.....
T Consensus 449 ~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 449 THLPNIKVHAYFA 461 (483)
T ss_pred hhCccceehhhcc
Confidence 9999998664444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=5.1e-12 Score=107.92 Aligned_cols=223 Identities=18% Similarity=0.215 Sum_probs=121.4
Q ss_pred CCCCCcEEEccCCC--ch-------hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccC
Q 016686 20 NISSLECLNLSNCT--ID-------SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQ 90 (384)
Q Consensus 20 ~~~~L~~L~ls~n~--i~-------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 90 (384)
-+.+|.+|.+++.. |. .+|-++..+.+|+.+.++.+.-..+..... .-|.|+.+...+.-+++.+.+--
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~--~kptl~t~~v~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIEL--LKPTLQTICVHNTTIQDVPSLLP 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceee--cCchhheeeeecccccccccccc
Confidence 35567777776643 21 122233345677777777665443322111 33677777776666655544433
Q ss_pred CCCccEEEeeC-CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCcc
Q 016686 91 MKALEHLDLSS-SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLK 169 (384)
Q Consensus 91 ~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~ 169 (384)
...+....-+. ....|.....+... ..|++++|+.|.|+.. .... .-.|.++.|++++|++... ..+..+++|+
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTW-q~LtelDLS~N~I~~i-DESv-KL~Pkir~L~lS~N~i~~v--~nLa~L~~L~ 332 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTW-QELTELDLSGNLITQI-DESV-KLAPKLRRLILSQNRIRTV--QNLAELPQLQ 332 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchH-hhhhhccccccchhhh-hhhh-hhccceeEEeccccceeee--hhhhhcccce
Confidence 33333222211 11122211122222 4566777777776532 2222 3456777777777776644 3356677777
Q ss_pred EEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh-hHHhccC
Q 016686 170 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV-SLHQLSS 248 (384)
Q Consensus 170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~ 248 (384)
.||+++|.++... . .-..+.+.+.|.+++|.+.+. ..+.++-+|..|++++|+|... -...+++
T Consensus 333 ~LDLS~N~Ls~~~-G------------wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 333 LLDLSGNLLAECV-G------------WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGN 397 (490)
T ss_pred EeecccchhHhhh-h------------hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccc
Confidence 7777777665331 1 122456667777777766542 4455666777777777776543 2345667
Q ss_pred CCCCCEEEccCCccCc
Q 016686 249 LSKLTNLSIRDAVLTN 264 (384)
Q Consensus 249 ~~~L~~L~l~~n~l~~ 264 (384)
+|.|+++.+.+|++.+
T Consensus 398 LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 398 LPCLETLRLTGNPLAG 413 (490)
T ss_pred ccHHHHHhhcCCCccc
Confidence 7777777777777665
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=8.4e-11 Score=110.72 Aligned_cols=196 Identities=25% Similarity=0.299 Sum_probs=148.1
Q ss_pred EEEccCCCC-CC---CCCCCCCcEEEccCCCchhHHhhCcCCC-CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 7 FLNLAWTGV-TK---LPNISSLECLNLSNCTIDSILEGNENKA-PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 7 ~L~l~~n~i-~~---l~~~~~L~~L~ls~n~i~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
.++.+.+.+ .. +...+.++.|++.+|.+..++....... +|++|++++|.+..++... ..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~--~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL--RNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh--hccccccccccCCch
Confidence 466776765 32 3355678999999999999988887774 9999999999999885433 388999999999999
Q ss_pred CCCccccc-CCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686 82 LSRFCFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 160 (384)
Q Consensus 82 l~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 160 (384)
+..++... ..+.|+.|++++|.++ .+|...... ..|+++.+++|++..... . ...+.++..+.+..|++... +.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~~~~~-~-~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSIIELLS-S-LSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcceecch-h-hhhcccccccccCCceeeec-cc
Confidence 98886554 7889999999999998 455544443 569999999996432222 2 24577888888888877642 45
Q ss_pred hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686 161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223 (384)
Q Consensus 161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 223 (384)
.+..++.++.|++++|.++... .+....+++.+++++|.+....+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~--------------~~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSIS--------------SLGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhccccccceeccccccccccc--------------cccccCccCEEeccCccccccchhhhc
Confidence 6778888999999999987653 356778899999999988876655443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2.5e-12 Score=118.53 Aligned_cols=171 Identities=22% Similarity=0.272 Sum_probs=79.7
Q ss_pred ccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEcc
Q 016686 47 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLS 125 (384)
Q Consensus 47 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 125 (384)
-...|++.|.+..++..+. .+..|+.+.+..|.+..+ ..+..+..|++++++.|+++ ..|..++.+ -|+.|-++
T Consensus 77 t~~aDlsrNR~~elp~~~~--~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l--pLkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEAC--AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL--PLKVLIVS 151 (722)
T ss_pred hhhhhccccccccCchHHH--HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC--cceeEEEe
Confidence 3344555555554444322 334444455555544444 34444555555555555554 344444443 35555555
Q ss_pred CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC
Q 016686 126 NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 205 (384)
Q Consensus 126 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 205 (384)
+|+++. .+..+ +..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++...+++ +..++ |.
T Consensus 152 NNkl~~-lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-------------l~~Lp-Li 214 (722)
T KOG0532|consen 152 NNKLTS-LPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-------------LCSLP-LI 214 (722)
T ss_pred cCcccc-CCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-------------HhCCc-ee
Confidence 555442 22222 23445555555555543 2333444555555555555555444333 22222 55
Q ss_pred EEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686 206 RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240 (384)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~ 240 (384)
.||++.|++.. +|..|.++++|++|-|.+|.+++
T Consensus 215 ~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 215 RLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeecccCceee-cchhhhhhhhheeeeeccCCCCC
Confidence 55555555544 34445555555555555555544
No 33
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-11 Score=115.92 Aligned_cols=238 Identities=24% Similarity=0.244 Sum_probs=132.9
Q ss_pred CCCcEEEccCCCCCC----CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 3 PRLSFLNLAWTGVTK----LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~----l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
..++.+.+..|.+.. +..+.+++.|++.+|.|..+...+..+++|++|++++|.|+.+... ..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheec
Confidence 345555566666554 4566677777777777776654455677777777777777766532 255667777777
Q ss_pred cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
+|.|..+..+..++.|+.+++++|.+....+.....+ .+++.+.+.+|.+....... .+..+..+++..|.++...
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i~~~~---~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREIEGLD---LLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcccchH---HHHHHHHhhcccccceecc
Confidence 7777777666667777777777777764333103444 67777777777654332211 1223333355556554221
Q ss_pred HHhhhCCC--CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686 159 ISYMSMMP--SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236 (384)
Q Consensus 159 ~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 236 (384)
.+.... .|+.+++++|.+.... . .+..+..+..+++.+|.+... ..+...+.+..+....+
T Consensus 225 --~l~~~~~~~L~~l~l~~n~i~~~~-~------------~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 225 --GLNELVMLHLRELYLSGNRISRSP-E------------GLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred --CcccchhHHHHHHhcccCcccccc-c------------cccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 111222 2666667666665431 1 244556666777776665543 22333444455555555
Q ss_pred CCChh---hHH-hccCCCCCCEEEccCCccCc
Q 016686 237 SLTDV---SLH-QLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 237 ~i~~~---~~~-~l~~~~~L~~L~l~~n~l~~ 264 (384)
.+... ... ..+..+.++.+.+..|.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 288 KLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhcchhhhhccccccccccccccccccCcccc
Confidence 44321 111 12344556666666665544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4.5e-11 Score=102.21 Aligned_cols=180 Identities=24% Similarity=0.298 Sum_probs=122.2
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCch----hHHh---------------hhcC---CCCccEEEe
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINE----REAF---------------LYIE---TSLLSFLDV 77 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~---------------~~~~---l~~L~~L~l 77 (384)
-+++|..+.++.|.-..|-.-...-|.|+++.+.+..+... |... .... -..|+++++
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 45577777777776443322222456677776665443221 1100 0001 145778999
Q ss_pred ecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCCh
Q 016686 78 SNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDD 156 (384)
Q Consensus 78 s~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~ 156 (384)
|+|.|+.+ ....-.|.++.|++++|.+.. .+.++.+ ++|+.|+|++|.++.. ..+ -..+-+++.|.++.|.+.+
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L-~~L~~LDLS~N~Ls~~-~Gw-h~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAEL-PQLQLLDLSGNLLAEC-VGW-HLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceee--ehhhhhc-ccceEeecccchhHhh-hhh-HhhhcCEeeeehhhhhHhh
Confidence 99988877 466777889999999998874 3447777 8999999999887632 221 1246788899999888764
Q ss_pred HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686 157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 217 (384)
Q Consensus 157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 217 (384)
. ..+..+.+|..||+++|++...... +.++++|.|+.+.+.+|.+...
T Consensus 367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV-----------~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 367 L--SGLRKLYSLVNLDLSSNQIEELDEV-----------NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h--hhhHhhhhheeccccccchhhHHHh-----------cccccccHHHHHhhcCCCcccc
Confidence 3 5567788899999999988754332 3678889999999999988874
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.3e-11 Score=103.78 Aligned_cols=196 Identities=22% Similarity=0.275 Sum_probs=101.3
Q ss_pred ccEEEeeCCCCCchhHH-HHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC-CChHHH-HhhhCCCCccE
Q 016686 94 LEHLDLSSSMIGDDSVE-MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAI-SYMSMMPSLKF 170 (384)
Q Consensus 94 L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~l~~~~~L~~ 170 (384)
|+++||+...++..... -+..+ .+|+.|.+.++++...+...++ .-.+|+.|+++.+. ++.... .-+..++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 55666665555533222 23333 5566666666666555554443 23556666665442 443222 22345556666
Q ss_pred EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC--CCcc-cccccccCCCCcEEEcCCC-CCChhhHHhc
Q 016686 171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ--VSDA-TLFPLSTFKELIHLSLRNA-SLTDVSLHQL 246 (384)
Q Consensus 171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~-~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 246 (384)
|+++.|.+....... ..-.--+++..|+++++. +... ...-..+|++|.+|+|++| .++......|
T Consensus 265 LNlsWc~l~~~~Vtv----------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV----------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred cCchHhhccchhhhH----------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 666665544322110 000112455566665542 1111 1112235667777777665 3444445556
Q ss_pred cCCCCCCEEEccCCccC-ccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686 247 SSLSKLTNLSIRDAVLT-NSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303 (384)
Q Consensus 247 ~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 303 (384)
..++.|++|.++.|..- ....-.+...++|.+|++.+|- ++....-+-..+|++.
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v--sdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV--SDTTMELLKEMLSHLK 390 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc--CchHHHHHHHhCcccc
Confidence 66777777777766421 1122245566889999998875 3445555566677665
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=3.6e-10 Score=106.46 Aligned_cols=175 Identities=29% Similarity=0.420 Sum_probs=84.5
Q ss_pred CCCccEEEeecCCCCCcccccCCC--CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCE
Q 016686 69 TSLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 146 (384)
Q Consensus 69 l~~L~~L~ls~n~l~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 146 (384)
.+.++.|++.+|.+..++...... +|+.|++++|.+. ..+..+..+ +.|+.|+++.|++....... +..+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~--~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNL-PNLKNLDLSFNDLSDLPKLL--SNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhcc-ccccccccCCchhhhhhhhh--hhhhhhhh
Confidence 345555555555555553222222 5556666655555 233344444 55555555555555332221 13455555
Q ss_pred EeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686 147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226 (384)
Q Consensus 147 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 226 (384)
|++++|.+... |........|+++.+++|++...+. .+..+..+..+.+.+|++... +..++.++
T Consensus 191 L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~~~~-------------~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~ 255 (394)
T COG4886 191 LDLSGNKISDL-PPEIELLSALEELDLSNNSIIELLS-------------SLSNLKNLSGLELSNNKLEDL-PESIGNLS 255 (394)
T ss_pred eeccCCccccC-chhhhhhhhhhhhhhcCCcceecch-------------hhhhcccccccccCCceeeec-cchhcccc
Confidence 55555555432 2222233345555555553222211 244445555555555554432 33444555
Q ss_pred CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc
Q 016686 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
.+++|++++|.++.... ++...+++.|++++|.+..
T Consensus 256 ~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 256 NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 55555555555555332 5555555555555555544
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5.9e-11 Score=101.36 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=33.9
Q ss_pred CcEEEccCCCch--hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC-CCCCc---ccccCCCCccEE
Q 016686 24 LECLNLSNCTID--SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS-SLSRF---CFLTQMKALEHL 97 (384)
Q Consensus 24 L~~L~ls~n~i~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~---~~~~~~~~L~~L 97 (384)
|+++|+++..|+ .+.--+..|.+|+.|.+.++++.+..-. ..++-.+|+.|+++.+ +++.. -.+.+|+.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 455555555444 1222222445555555555554432111 1224445555555544 23222 133444445555
Q ss_pred EeeCCCC
Q 016686 98 DLSSSMI 104 (384)
Q Consensus 98 ~L~~n~l 104 (384)
+++.|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555444
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=9.8e-12 Score=114.68 Aligned_cols=212 Identities=20% Similarity=0.254 Sum_probs=152.9
Q ss_pred EeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC
Q 016686 50 ISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR 128 (384)
Q Consensus 50 L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 128 (384)
|.|++-.+..++....-..+.--...+++.|++..+ ..++.+..|+.+.+++|.+. .+|..++.+ ..|+.++++.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L-~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNL-EALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhh-hHHHHhhhccch
Confidence 334444444443321112334445678888888777 45666777888888888887 577888888 889999999999
Q ss_pred CCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEE
Q 016686 129 FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLN 208 (384)
Q Consensus 129 l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 208 (384)
++......+ .--|+.|.+++|.++ ..|..++....|..||.+.|.+....++ +..+.+|+.|.
T Consensus 133 lS~lp~~lC---~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsq-------------l~~l~slr~l~ 195 (722)
T KOG0532|consen 133 LSHLPDGLC---DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQ-------------LGYLTSLRDLN 195 (722)
T ss_pred hhcCChhhh---cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHH-------------hhhHHHHHHHH
Confidence 875444322 345888888888876 5667777888899999999988877665 77788899999
Q ss_pred ccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccccccc---CCCCCCEEEccCC
Q 016686 209 LEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK---PPRSLKLLDLHGG 284 (384)
Q Consensus 209 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n 284 (384)
+..|++... |..+..+ .|..||++.|++.. +|..|..|..|++|-|.+|.++.- |..++ ...-.|+|+..-|
T Consensus 196 vrRn~l~~l-p~El~~L-pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 196 VRRNHLEDL-PEELCSL-PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HhhhhhhhC-CHHHhCC-ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 999988874 5556544 48899999999887 678889999999999999998763 22222 2234566766666
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.93 E-value=2.5e-09 Score=105.79 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=75.8
Q ss_pred ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686 168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 247 (384)
Q Consensus 168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 247 (384)
++.|++++|.+.+..|. .+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..++
T Consensus 420 v~~L~L~~n~L~g~ip~------------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN------------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCH------------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 56677777777766666 566777777777777777776666677777777777777777777777777
Q ss_pred CCCCCCEEEccCCccCccccccccCC-CCCCEEEccCCcCCC
Q 016686 248 SLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLT 288 (384)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~ 288 (384)
.+++|+.|++++|.+++..|..+... .++..+++.+|...+
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 77777777777777777666655543 355667777766533
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-10 Score=110.24 Aligned_cols=240 Identities=24% Similarity=0.305 Sum_probs=131.0
Q ss_pred CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686 22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 101 (384)
Q Consensus 22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~ 101 (384)
..++.+.+..|.|..+-..+..+.+|+.+++.+|.+..+... +..+++|++|++++|.|+.+..+..++.|+.|++++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhhheecc
Confidence 445555566666665444455667777777777777665542 235677777777777777776666666677777777
Q ss_pred CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
|.+.. ...+..+ +.|+.+++++|++....... ...+.+++.+++..|.+... ..+.....+..+++..|.+...
T Consensus 150 N~i~~--~~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 150 NLISD--ISGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred Ccchh--ccCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 76652 2223334 66677777777665433311 13456677777766665432 2222333344445555555432
Q ss_pred hhhcccchhhhhhHHhhcCCC--CCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686 182 IQQVGAETDLVLSLTALQNLN--HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~ 259 (384)
-+ +.... +|+.+++++|.+.... ..+..+..+..+++..|++...- .+...+.+..+....
T Consensus 224 ~~--------------l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 224 EG--------------LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLND 286 (414)
T ss_pred cC--------------cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCc
Confidence 11 11112 2667777777666531 33445566666777666655421 233344455555555
Q ss_pred CccCccc---cc-cccCCCCCCEEEccCCcC
Q 016686 260 AVLTNSG---LG-SFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 260 n~l~~~~---~~-~~~~~~~L~~L~l~~n~~ 286 (384)
|.+.... .. .....+.+..+.+..|..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred chhcchhhhhccccccccccccccccccCcc
Confidence 5544211 11 123345666666666654
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.84 E-value=6.9e-09 Score=102.64 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=99.0
Q ss_pred CCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccc
Q 016686 143 NLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL 222 (384)
Q Consensus 143 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (384)
.++.|+|++|.+.+..|..+..+++|+.|++++|.+.+.+|. .+..+++|+.|++++|++++.+|..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~------------~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------SLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh------------HHhCCCCCCEEECCCCCCCCCCchHH
Confidence 378899999999988899999999999999999999988887 68999999999999999999999999
Q ss_pred ccCCCCcEEEcCCCCCChhhHHhccCC-CCCCEEEccCCccCc
Q 016686 223 STFKELIHLSLRNASLTDVSLHQLSSL-SKLTNLSIRDAVLTN 264 (384)
Q Consensus 223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-~~L~~L~l~~n~l~~ 264 (384)
+.+++|+.|++++|.+++.+|..+... .++..+++.+|....
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999999999888753 567889999987443
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.83 E-value=9.5e-09 Score=86.98 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=84.9
Q ss_pred CCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCc
Q 016686 141 LPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSD 216 (384)
Q Consensus 141 l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 216 (384)
-|.|++.....|++..- ....+.....|+.+.+..|.|....-.. +.. -.+..+.+|+.||+.+|.++.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~------L~~-~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTM------LAF-LGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHH------HHH-HHHHHhCcceeeeccccchhh
Confidence 45677777777765421 1122333356777777777765331110 000 023456778888888887765
Q ss_pred cc----ccccccCCCCcEEEcCCCCCChhhHHh----cc--CCCCCCEEEccCCccCcccccc--c-----cCCCCCCEE
Q 016686 217 AT----LFPLSTFKELIHLSLRNASLTDVSLHQ----LS--SLSKLTNLSIRDAVLTNSGLGS--F-----KPPRSLKLL 279 (384)
Q Consensus 217 ~~----~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~--~~~~L~~L~l~~n~l~~~~~~~--~-----~~~~~L~~L 279 (384)
.. ...+..++.|+.|.+..|-++...... |. ..|+|..|...+|.+.+..... + ..++-|..|
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 42 334456777888888888776543332 22 3678888888888776643332 1 234677888
Q ss_pred EccCCcCCCHHHH
Q 016686 280 DLHGGWLLTEDAI 292 (384)
Q Consensus 280 ~l~~n~~~~~~~~ 292 (384)
.+.+|++.....+
T Consensus 309 e~ngNr~~E~~d~ 321 (388)
T COG5238 309 ERNGNRIKELADF 321 (388)
T ss_pred HHccCcchhHHHH
Confidence 8888888443333
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=2.9e-09 Score=71.43 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=22.0
Q ss_pred CcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCC
Q 016686 228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 284 (384)
Q Consensus 228 L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (384)
|++|++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333333333333333333333334444444444333333333333344444444433
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4e-09 Score=70.68 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=57.5
Q ss_pred CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCcc
Q 016686 202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 262 (384)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 262 (384)
++|++|++++|+++...+..+.++++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999998888999999999999999999999899999999999999999975
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.72 E-value=5.9e-09 Score=93.23 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=174.4
Q ss_pred CCcEEEccCCCch---hHHhhCcCCCCccEEeccCCC-CCchhHHhhh-cCCCCccEEEeecC-CCCCc---ccccCCCC
Q 016686 23 SLECLNLSNCTID---SILEGNENKAPLAKISLAGTT-FINEREAFLY-IETSLLSFLDVSNS-SLSRF---CFLTQMKA 93 (384)
Q Consensus 23 ~L~~L~ls~n~i~---~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~-~~l~~L~~L~ls~n-~l~~~---~~~~~~~~ 93 (384)
.|+.|.+.++.-. .+-....++|++++|.+.++. +++..- ..+ ..+++|+++++..| .++.. .-...+++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5788888888533 233333488999999998875 333211 112 35789999999885 34444 24567889
Q ss_pred ccEEEeeCCC-CCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhh-CCCCcc
Q 016686 94 LEHLDLSSSM-IGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMS-MMPSLK 169 (384)
Q Consensus 94 L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~-~~~~L~ 169 (384)
|++++++.|. +++.....+.+-+..++.+.+.+|. ..........+.+..+..+++..+ .+++.....+. .+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999884 5544444443332567777666663 444444444556677777776544 46665443333 567899
Q ss_pred EEEeeCCcCCcchhhcccchhhhhhHHhh-cCCCCCCEEEccCC-CCCcccccccc-cCCCCcEEEcCCCCCC-hh-hHH
Q 016686 170 FIDISNTDIKGFIQQVGAETDLVLSLTAL-QNLNHLERLNLEQT-QVSDATLFPLS-TFKELIHLSLRNASLT-DV-SLH 244 (384)
Q Consensus 170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~l~-~~~~L~~L~L~~n~i~-~~-~~~ 244 (384)
.++.+++...+..+-+ .+ .++.+|+.+-++.+ ++++.....++ +++.|+.+++.++... +. ...
T Consensus 298 ~l~~s~~t~~~d~~l~-----------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLW-----------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhcccCCCCCchHHHH-----------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 9999887643322211 23 46789999999998 46665555555 6889999999988543 22 333
Q ss_pred hccCCCCCCEEEccCCc-cCccccccccC----CCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686 245 QLSSLSKLTNLSIRDAV-LTNSGLGSFKP----PRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303 (384)
Q Consensus 245 ~l~~~~~L~~L~l~~n~-l~~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 303 (384)
.-.+++.|+.+.++++. +++.+...+.. +..+..+.+++++.+++..... ...+++++
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Le 429 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLE 429 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccc
Confidence 33578999999999885 66665544443 4789999999999977655443 34455555
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=5.5e-09 Score=89.51 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=115.8
Q ss_pred CCCccEEEeecCCCCCc----ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccEEEccCCCCCchHHHHHHhCCCC
Q 016686 69 TSLLSFLDVSNSSLSRF----CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRNLNLSNTRFSSAGVGILAGHLPN 143 (384)
Q Consensus 69 l~~L~~L~ls~n~l~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 143 (384)
++.+++++|.+|.|+++ ..+.++|.|+.|+++.|++...+ +.+ ... .+|+.|-|.+..+.......+...+|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPL-KNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccc-cceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45566666666666655 24456666666666666665322 122 233 566677776666665555555556666
Q ss_pred CCEEeccCCCCChH--HHHhhh-CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc-c
Q 016686 144 LEILSLSGTQIDDY--AISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT-L 219 (384)
Q Consensus 144 L~~L~l~~n~i~~~--~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~ 219 (384)
+++|.++.|..... ...... ..+.+.++....|........ ...-+.++++..+.+..|.+.... .
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~----------~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK----------NKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH----------HhHHhhcccchheeeecCcccchhhc
Confidence 77776666632100 001111 122344454444432211100 001234577888888887665432 2
Q ss_pred cccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCccccc------cccCCCCCCEEEccCCcCCCHH
Q 016686 220 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGLG------SFKPPRSLKLLDLHGGWLLTED 290 (384)
Q Consensus 220 ~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~~~~~~ 290 (384)
.....++.+-.|+|+.++|.+. ..+++..+++|..|.++++++.+.... .++.+++++.|+= ..+.+.+
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG--skIss~e 293 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG--SKISSRE 293 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC--cccchhh
Confidence 2333456667888888888663 446788899999999999987764221 2445567776653 3554443
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=3.7e-08 Score=100.00 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=102.6
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCC--CCchhHHhhhcCCCCccEEEeecCC-CCCc-ccccCCCCcc
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTT--FINEREAFLYIETSLLSFLDVSNSS-LSRF-CFLTQMKALE 95 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~-~~~~~~~~L~ 95 (384)
+....+...+-+|.+..++... .++.|++|-+..|. +..++..+ |..+|.|++||+++|. +... ..++.+-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~f-f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEF-FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHH-HhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456778888888877665433 55678888888875 56666553 6688888899988763 4444 4677788888
Q ss_pred EEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC--CChHHHHhhhCCCCccEEEe
Q 016686 96 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ--IDDYAISYMSMMPSLKFIDI 173 (384)
Q Consensus 96 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~l~~~~~L~~L~l 173 (384)
+|+++++.+. ..|..+..+ ..|.+|++..+......+. +...+++|++|.+.... .+......+..+..|+.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~L-k~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNL-KKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccccCCCcc-ccchHHHHH-Hhhheeccccccccccccc-hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8888888888 678888888 8888888887654323232 22447888888875443 33334445556666666655
Q ss_pred eC
Q 016686 174 SN 175 (384)
Q Consensus 174 ~~ 175 (384)
..
T Consensus 676 ~~ 677 (889)
T KOG4658|consen 676 TI 677 (889)
T ss_pred ec
Confidence 43
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=2.5e-07 Score=78.55 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred cCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCccCccc
Q 016686 224 TFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSG 266 (384)
Q Consensus 224 ~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~ 266 (384)
.+.+|+.|++..|-++.. ...+++.++.|+.|.+..|.++..+
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 445555555555544432 2223344455555555555544433
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.7e-08 Score=85.40 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=112.8
Q ss_pred CCcEEEccCCCchh--HHhhCc-CCCCccEEeccCCCCCchhHHhh-hcCCCCccEEEeecCCCCCc-ccc-cCCCCccE
Q 016686 23 SLECLNLSNCTIDS--ILEGNE-NKAPLAKISLAGTTFINEREAFL-YIETSLLSFLDVSNSSLSRF-CFL-TQMKALEH 96 (384)
Q Consensus 23 ~L~~L~ls~n~i~~--~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~-~~~-~~~~~L~~ 96 (384)
-++.+.+.++.|.. ....++ .++.++++|+.+|.++.....+. +.++|.|+.|+++.|++... ..+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44567777777763 333444 77888899999998887554332 45789999999998887654 333 35567888
Q ss_pred EEeeCCCCCchhHH-HHHhccCCccEEEccCCCCCchHHH--HHHhCCCCCCEEeccCCCCCh--HHHHhhhCCCCccEE
Q 016686 97 LDLSSSMIGDDSVE-MVACVGANLRNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQIDD--YAISYMSMMPSLKFI 171 (384)
Q Consensus 97 L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~~~~L~~L 171 (384)
|-|.+..+.=.... .+..+ |.+++|+++.|........ ....--+.+++|....|.... .....-..++++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~l-P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDL-PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcc-hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 88888776533333 33344 7888888888853221110 000011245555554443220 001111234566666
Q ss_pred EeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc-cccccccCCCCcEEEcCCCCCCh
Q 016686 172 DISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA-TLFPLSTFKELIHLSLRNASLTD 240 (384)
Q Consensus 172 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~n~i~~ 240 (384)
-+..|.+......- .+..++.+-.|+++.+++.+. ..+++.+++.|+.|.++++.+.+
T Consensus 205 ~v~e~PlK~~s~ek-----------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 205 FVCEGPLKTESSEK-----------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeecCcccchhhcc-----------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66666554332211 233344455555555555442 12344455566666666555443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=8.1e-10 Score=105.02 Aligned_cols=86 Identities=28% Similarity=0.357 Sum_probs=34.7
Q ss_pred hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc-cccccCCCCC
Q 016686 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSL 276 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L 276 (384)
+..++.|++||++.|.+....--....|. |+.|.+.+|.++... .+.++.+|+.|++++|-+.+.. ...+..+..|
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL 281 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHH
Confidence 34444444444444444432111112222 444444444444321 2334444444555544443321 1122223444
Q ss_pred CEEEccCCcC
Q 016686 277 KLLDLHGGWL 286 (384)
Q Consensus 277 ~~L~l~~n~~ 286 (384)
+.|+|.+|++
T Consensus 282 ~~L~LeGNPl 291 (1096)
T KOG1859|consen 282 IVLWLEGNPL 291 (1096)
T ss_pred HHHhhcCCcc
Confidence 4455555544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=2.9e-09 Score=101.37 Aligned_cols=176 Identities=24% Similarity=0.287 Sum_probs=117.9
Q ss_pred CCCCccEEEeecCCCCCcccccCCC-CccEEEeeCCCCCchhHHHHHhcc---------CCccEEEccCCCCCchHHHHH
Q 016686 68 ETSLLSFLDVSNSSLSRFCFLTQMK-ALEHLDLSSSMIGDDSVEMVACVG---------ANLRNLNLSNTRFSSAGVGIL 137 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~---------~~L~~L~L~~n~l~~~~~~~~ 137 (384)
.+..|++|.+..+.+.....+..+. .|++| |.+|.++ ..-..+..+. -.|...+.+.|.+.. ....
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~L-IC~~Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-mD~S- 182 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKL-ICHNSLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLVL-MDES- 182 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhh-hhhccHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHHh-HHHH-
Confidence 5567788888887775543222221 23333 2222221 1111111110 256667777777652 2222
Q ss_pred HhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686 138 AGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 217 (384)
Q Consensus 138 ~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 217 (384)
..-++.+++|+|+.|+++.. +.+..++.|++||+++|.+..+... ....+. |+.|.+++|.++..
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l------------~~~gc~-L~~L~lrnN~l~tL 247 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQL------------SMVGCK-LQLLNLRNNALTTL 247 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccccc------------chhhhh-heeeeecccHHHhh
Confidence 24578999999999999866 5889999999999999998865433 334444 99999999988864
Q ss_pred cccccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCc
Q 016686 218 TLFPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 218 ~~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
..+.++.+|+.|++++|-+.+. -...++.+..|+.|.|.||++--
T Consensus 248 --~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 4567899999999999987653 23345677899999999999854
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=7.5e-08 Score=97.76 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=93.6
Q ss_pred CCcEEEccCCCCCCCC---CCCCCcEEEccCCC--chhHHhhCc-CCCCccEEeccCC-CCCchhHHhhhcCCCCccEEE
Q 016686 4 RLSFLNLAWTGVTKLP---NISSLECLNLSNCT--IDSILEGNE-NKAPLAKISLAGT-TFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~--i~~~~~~~~-~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~ 76 (384)
..+.+.+-+|.+..++ .+++|++|-+..|. +..++..++ .+|.|+.||+++| .+..+|.... .+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhhccc
Confidence 4455666666655443 56678888888875 566666655 7888888888876 4455665543 778888888
Q ss_pred eecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC--CCchHHHHHHhCCCCCCEEec
Q 016686 77 VSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR--FSSAGVGILAGHLPNLEILSL 149 (384)
Q Consensus 77 ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l 149 (384)
++.+.+... ..+.+++.|.+|++..+.-....+.....+ ++|+.|.+..-. .+....... ..+.+|+.+..
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~ 675 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSI 675 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhc-ccccEEEeeccccccchhhHHhh-hcccchhhhee
Confidence 888888776 477788888888888776544445555556 788888776654 222223332 34555555554
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.32 E-value=1.4e-06 Score=86.40 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=88.5
Q ss_pred CCcEEEccCCCch--hHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686 23 SLECLNLSNCTID--SILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 99 (384)
Q Consensus 23 ~L~~L~ls~n~i~--~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L 99 (384)
+|++|++++...- +.|..++ -+|.|+.|.+++-.+......-.+.++|+|..||+|+++++...+++++++|+.|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 6777777775532 4566666 677777777777666543322234567777777777777777777777777777776
Q ss_pred eCCCCCc-hhHHHHHhccCCccEEEccCCCCCch--HHH---HHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEE
Q 016686 100 SSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSA--GVG---ILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFID 172 (384)
Q Consensus 100 ~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~ 172 (384)
.+=.+.. .....+..+ .+|+.||++....... .+. +....+|+|+.||.+++.+++...+.+. ..++|+.+.
T Consensus 203 rnLe~e~~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cCCCCCchhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 6555543 233445555 7777777777553221 111 1112367777777777766654443332 334444433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.31 E-value=9.8e-07 Score=54.26 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchh
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINER 61 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~ 61 (384)
+|++|++++|+|+.+|..+.++++|++|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666655556666666666666665443
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1.1e-06 Score=71.55 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=80.1
Q ss_pred cEEEccCCCCCCCCCC----CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 6 SFLNLAWTGVTKLPNI----SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 6 ~~L~l~~n~i~~l~~~----~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
+++++.+..+..+.++ .+...+|+++|.+..+ ..+..++.|.+|.+.+|.|+.+.+.+. .-+|+|+.|.+.+|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcc
Confidence 4566666666655543 3566788888887754 345577888888888888887766542 235778888888887
Q ss_pred CCCc---ccccCCCCccEEEeeCCCCCchhH---HHHHhccCCccEEEccCCC
Q 016686 82 LSRF---CFLTQMKALEHLDLSSSMIGDDSV---EMVACVGANLRNLNLSNTR 128 (384)
Q Consensus 82 l~~~---~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~ 128 (384)
|..+ ..+..|++|++|.+-+|+++..-- ..+..+ |+|+.||+.+-.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl-p~l~~LDF~kVt 151 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL-PSLRTLDFQKVT 151 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec-CcceEeehhhhh
Confidence 7655 567778888888888887653211 122334 788888876543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=3.3e-06 Score=83.84 Aligned_cols=152 Identities=26% Similarity=0.409 Sum_probs=106.6
Q ss_pred CCccEEEeeCCCC-CchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccE
Q 016686 92 KALEHLDLSSSMI-GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 170 (384)
Q Consensus 92 ~~L~~L~L~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 170 (384)
.+|++|++++... ...++..++.++|+|+.|.+++-.+........+.++|+|..||+++++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5688999988654 44577778877799999999887776655556667899999999999988765 56778888888
Q ss_pred EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc--cc----ccccCCCCcEEEcCCCCCChhhHH
Q 016686 171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT--LF----PLSTFKELIHLSLRNASLTDVSLH 244 (384)
Q Consensus 171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~----~l~~~~~L~~L~L~~n~i~~~~~~ 244 (384)
|.+.+=.+..... +..+-.+++|+.||+|........ .. .-..+|+|+.||.++..+.+...+
T Consensus 200 L~mrnLe~e~~~~-----------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 200 LSMRNLEFESYQD-----------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HhccCCCCCchhh-----------HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 8887766654211 124667889999999887544422 11 112578889999888888766544
Q ss_pred hc-cCCCCCCEEE
Q 016686 245 QL-SSLSKLTNLS 256 (384)
Q Consensus 245 ~l-~~~~~L~~L~ 256 (384)
.+ ..-|+|+.+.
T Consensus 269 ~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 269 ELLNSHPNLQQIA 281 (699)
T ss_pred HHHHhCccHhhhh
Confidence 43 2344454444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=5.2e-06 Score=51.03 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccc
Q 016686 45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFL 88 (384)
Q Consensus 45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 88 (384)
++|++|++++|.++.+++. +.++++|+.|++++|++++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE--LSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSSCCSBEGGG
T ss_pred CcceEEEccCCCCcccCch--HhCCCCCCEEEecCCCCCCCcCC
Confidence 4688888888888887764 44888888888888888776544
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2.6e-07 Score=70.43 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=62.3
Q ss_pred CCcEEEccCCCchhHHhhC---cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEE
Q 016686 23 SLECLNLSNCTIDSILEGN---ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLD 98 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~ 98 (384)
.+-.++++.|.+-.+++.. ....+|+.+++++|.+..+++.+. .+.|.++.|++++|.|+++ ..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft-~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT-IKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-hccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3455667777655444333 255666667777777776666542 3445666666666666666 2455666666666
Q ss_pred eeCCCCCchhHHHHHhccCCccEEEccCCCCC
Q 016686 99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFS 130 (384)
Q Consensus 99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 130 (384)
++.|.+. ..|..+..+ .++..|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L-~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPL-IKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHH-HhHHHhcCCCCccc
Confidence 6666665 345555555 56666666665544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=4.4e-06 Score=68.07 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEec
Q 016686 70 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSL 149 (384)
Q Consensus 70 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 149 (384)
.....+++++|.+...+.+.+++.|..|.++.|.|+...|.-...+ ++|..|.+.+|++.....-.-...||+|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~-p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL-PNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc-cccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4566788888888777778888888888888888876555433334 788888888887754322111235778888887
Q ss_pred cCCCCChHHH---HhhhCCCCccEEEeeCC
Q 016686 150 SGTQIDDYAI---SYMSMMPSLKFIDISNT 176 (384)
Q Consensus 150 ~~n~i~~~~~---~~l~~~~~L~~L~l~~n 176 (384)
-+|+++...- ..+..+++|+.||+++-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777653211 12335556666665543
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=7.4e-07 Score=67.97 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred CcEEEccCCCCCCCC-------CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 5 LSFLNLAWTGVTKLP-------NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 5 L~~L~l~~n~i~~l~-------~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+..+|++++.+-.++ ...+|+.+++++|.+..+|..+. +++.++.|++++|.++.+|..+ ..+|.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~--Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL--AAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH--hhhHHhhhcc
Confidence 445778888766443 45578889999999999999888 7889999999999999999874 4999999999
Q ss_pred eecCCCCCc-ccccCCCCccEEEeeCCCCCch
Q 016686 77 VSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD 107 (384)
Q Consensus 77 ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~ 107 (384)
++.|.+... ..+..+.++-.|+..+|.+...
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence 999999877 3455588888888888877643
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=4.1e-07 Score=77.55 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=33.5
Q ss_pred CcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 5 LSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 5 L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
.+.|++.++++++|+ .|+.|+.|.||-|+|+.+. .+..|++|++|+|..|.|..+.+-..+.++|+|+.|.|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 344444444444432 4444444444444444331 122444444444444444444433333344444444444443
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.90 E-value=1.5e-05 Score=77.04 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=63.1
Q ss_pred CCCCccEEeccCC-CCCc--hhHHhhhcCCCCccEEEeecC-C-CCCc-----ccccCCCCccEEEeeCCC-CCchhHHH
Q 016686 43 NKAPLAKISLAGT-TFIN--EREAFLYIETSLLSFLDVSNS-S-LSRF-----CFLTQMKALEHLDLSSSM-IGDDSVEM 111 (384)
Q Consensus 43 ~~~~L~~L~l~~n-~~~~--~~~~~~~~~l~~L~~L~ls~n-~-l~~~-----~~~~~~~~L~~L~L~~n~-l~~~~~~~ 111 (384)
.++.|+.+.+.++ .++. ..+. ...++.|+.|+++.+ . +... .....+++|+.++++++. +++.....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL--ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH--HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 4566777777665 3333 2222 235677777777652 1 1111 233445667777777666 56555555
Q ss_pred HHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCC
Q 016686 112 VACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQ 153 (384)
Q Consensus 112 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~ 153 (384)
++..+++|+.|.+..+. ++......+...++.|++|+++++.
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 55533677777766665 5666666666666777777776665
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=6.8e-05 Score=69.10 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=25.0
Q ss_pred CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC-CCCchhHHhhhcCCCCccEEEeecC
Q 016686 21 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT-TFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 21 ~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
++++++|++++|.++.+| .+ .++|++|.++++ .++.++..+ .++|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP-VL--PNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCCcccCCchh----hhhhhheEccCc
Confidence 455555555555555554 11 124555555543 333333221 135555665555
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.62 E-value=9.6e-05 Score=71.47 Aligned_cols=112 Identities=28% Similarity=0.402 Sum_probs=72.6
Q ss_pred CCCCccEEEeecC-CCCC--c-ccccCCCCccEEEeeCC-CC-C--chhHHHHHhccCCccEEEccCCC-CCchHHHHHH
Q 016686 68 ETSLLSFLDVSNS-SLSR--F-CFLTQMKALEHLDLSSS-MI-G--DDSVEMVACVGANLRNLNLSNTR-FSSAGVGILA 138 (384)
Q Consensus 68 ~l~~L~~L~ls~n-~l~~--~-~~~~~~~~L~~L~L~~n-~l-~--~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~ 138 (384)
.++.|+.+.+..+ .+.. . +....++.|+.|+++++ .. . +.....+...+.+|+.++++.+. ++......+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 4688888888777 3443 2 45667788888888763 21 1 11112233333778888888877 6766676666
Q ss_pred hCCCCCCEEeccCCC-CChHHHHhhh-CCCCccEEEeeCCcCC
Q 016686 139 GHLPNLEILSLSGTQ-IDDYAISYMS-MMPSLKFIDISNTDIK 179 (384)
Q Consensus 139 ~~l~~L~~L~l~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~l~ 179 (384)
..+++|++|.+..+. +++.....+. .++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 667888888877676 5655544443 5677888888877643
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=2.6e-05 Score=66.26 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=69.1
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC--CCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCc
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT--TFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKAL 94 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L 94 (384)
....|+.+++.+..++.+ ..+..+++|++|.++.| .++.--.. ....+|+|++|.++.|+|..+ ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 455778888888777654 34457889999999988 44332111 123669999999999987755 456677778
Q ss_pred cEEEeeCCCCCch--hHHHHHhccCCccEEEccC
Q 016686 95 EHLDLSSSMIGDD--SVEMVACVGANLRNLNLSN 126 (384)
Q Consensus 95 ~~L~L~~n~l~~~--~~~~~~~~~~~L~~L~L~~ 126 (384)
..|++..|..+.. --..+..++++|++++-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8889988866531 1122233337787776544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=1.3e-05 Score=68.55 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=79.0
Q ss_pred CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCch-hHHHHHhccCCccE
Q 016686 43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRN 121 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~ 121 (384)
.+.+.++|+..+|.++++.-. .+|+.|++|.|+.|.|+....+..|+.|++|.|..|.|.+. ....+..+ |+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknl-psLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNL-PSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcC-chhhh
Confidence 356778899999999887643 38899999999999999998899999999999999988753 34567777 89999
Q ss_pred EEccCCCCCchH----HHHHHhCCCCCCEEe
Q 016686 122 LNLSNTRFSSAG----VGILAGHLPNLEILS 148 (384)
Q Consensus 122 L~L~~n~l~~~~----~~~~~~~l~~L~~L~ 148 (384)
|.|..|.=.+.. -..+...+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999888643322 234446688888885
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.28 E-value=0.00053 Score=53.35 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=20.1
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEcc
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIR 258 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~ 258 (384)
++..++.++.+.+.. .+.......+..+++++.+.+..+ ++......|.++ .++.+.+.
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 344444445554433 222222233334444444444432 333333334443 44444443
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.17 E-value=0.0024 Score=59.06 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=78.7
Q ss_pred CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCC-CCCchHHHHHHhCCCCCCE
Q 016686 68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT-RFSSAGVGILAGHLPNLEI 146 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~ 146 (384)
.+.+++.|++++|.+..++.+ ..+|+.|.+++|.--...|+.+. ++|+.|.+++| .+. .. ...|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sL-------P~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GL-------PESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-cc-------ccccce
Confidence 468889999999887777632 34688999887644334554332 67888888887 443 11 246777
Q ss_pred EeccCCCCChHHHHhhhCC-CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC
Q 016686 147 LSLSGTQIDDYAISYMSMM-PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 225 (384)
Q Consensus 147 L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 225 (384)
|++..+.... +..+ ++|+.|.+.+++....... .-.-.++|+.|++++|.... .|..+.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~l------------p~~LPsSLk~L~Is~c~~i~-LP~~LP-- 176 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARI------------DNLISPSLKTLSLTGCSNII-LPEKLP-- 176 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheecccccccccccc------------ccccCCcccEEEecCCCccc-Cccccc--
Confidence 7776655432 1222 3567777654321100000 00012568888888876543 232222
Q ss_pred CCCcEEEcCCC
Q 016686 226 KELIHLSLRNA 236 (384)
Q Consensus 226 ~~L~~L~L~~n 236 (384)
.+|+.|.++.+
T Consensus 177 ~SLk~L~ls~n 187 (426)
T PRK15386 177 ESLQSITLHIE 187 (426)
T ss_pred ccCcEEEeccc
Confidence 57788887665
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00014 Score=61.91 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=38.3
Q ss_pred CCccEEEeecCCCCCcccccCCCCccEEEeeCC--CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686 70 SLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS--MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 70 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 147 (384)
..|+.|++.+..++....+..+++|+.|.++.| .+.+...--...+ |+|+++++++|.+.....-.-...+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccccccchhhhhcchhhh
Confidence 444445555555555545555555555555555 3332222222233 5555555555554321100001234455555
Q ss_pred eccCCCC
Q 016686 148 SLSGTQI 154 (384)
Q Consensus 148 ~l~~n~i 154 (384)
++..|..
T Consensus 122 dl~n~~~ 128 (260)
T KOG2739|consen 122 DLFNCSV 128 (260)
T ss_pred hcccCCc
Confidence 5555543
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0045 Score=48.04 Aligned_cols=107 Identities=22% Similarity=0.315 Sum_probs=62.2
Q ss_pred HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..|..+++|+.+.+.. .+...... +|..++.++.+.+..+ +.......+..+++++.+.+.. .+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~------------~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGEN------------AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TT------------TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChh------------hccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 3466777888888764 44444444 6778878888888775 6666556677887888888865 555
Q ss_pred hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccC
Q 016686 240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283 (384)
Q Consensus 240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 283 (384)
......|..+++++.+.+..+ +.......|..+ .|+.+.+.+
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555557777888888888765 655555667776 888888765
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.71 E-value=9.5e-05 Score=70.48 Aligned_cols=186 Identities=24% Similarity=0.276 Sum_probs=87.2
Q ss_pred ccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHH---H
Q 016686 72 LSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGIL---A 138 (384)
Q Consensus 72 L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~---~ 138 (384)
+..+.+.+|.+... ..+...+.|+.|++++|.+.+.....+.... +.++.|.+..|.++......+ .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666665443 2455556666666666666644443333222 234455555555544322211 1
Q ss_pred hCCCCCCEEeccCCCCChH----HHHhhh----CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEc
Q 016686 139 GHLPNLEILSLSGTQIDDY----AISYMS----MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNL 209 (384)
Q Consensus 139 ~~l~~L~~L~l~~n~i~~~----~~~~l~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l 209 (384)
.....++.++++.|.+... .+..+. ...++++|.+++|.++..... ..-.++...+. +..+++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------LLDEVLASGESLLRELDL 240 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------HHHHHHhccchhhHHHHH
Confidence 2245566666666654311 112222 244556666666655532111 00002333333 444666
Q ss_pred cCCCCCccccc----ccccC-CCCcEEEcCCCCCChhh----HHhccCCCCCCEEEccCCccCcc
Q 016686 210 EQTQVSDATLF----PLSTF-KELIHLSLRNASLTDVS----LHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 210 ~~n~l~~~~~~----~l~~~-~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
..|.+.+.... .+..+ ..++++++..|.|++.. ...+..++.++.+.+++|.+.+.
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 66655543211 22223 34556666666555432 23334455566666666655554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.59 E-value=0.00014 Score=69.32 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=29.1
Q ss_pred ccEEEccCCCCCchHHHHHH---hCCCCCCEEeccCCCCChHHHHhhh----CC-CCccEEEeeCCcCCc
Q 016686 119 LRNLNLSNTRFSSAGVGILA---GHLPNLEILSLSGTQIDDYAISYMS----MM-PSLKFIDISNTDIKG 180 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~l~----~~-~~L~~L~l~~n~l~~ 180 (384)
+..+.|.+|.+.......+. ...+.|..|++++|.+.+.....++ .. ..++.|++..|.++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~ 158 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS 158 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc
Confidence 44555666655443322222 2345566666666666544333322 22 334555555555443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.0052 Score=50.57 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=63.6
Q ss_pred CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCC-CChHHHHhhhCCCCccE
Q 016686 93 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMSMMPSLKF 170 (384)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~ 170 (384)
.++.++-+++.|.....+.+..+ +.++.|.+.+|. +.......+.+-.++|+.|++++|. |++.....+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 36778888888888888888888 888888888875 5555555555556789999998775 78777788888888888
Q ss_pred EEeeCC
Q 016686 171 IDISNT 176 (384)
Q Consensus 171 L~l~~n 176 (384)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 877653
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.72 E-value=0.0039 Score=31.76 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=9.9
Q ss_pred CcEEEccCCCchhHHhh
Q 016686 24 LECLNLSNCTIDSILEG 40 (384)
Q Consensus 24 L~~L~ls~n~i~~~~~~ 40 (384)
|++|++++|.++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 55566666665555554
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.67 E-value=0.021 Score=26.97 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=5.6
Q ss_pred CCcEEEccCCCCCC
Q 016686 4 RLSFLNLAWTGVTK 17 (384)
Q Consensus 4 ~L~~L~l~~n~i~~ 17 (384)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.057 Score=44.62 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCCEEEccCCCCCcccccccccCCCCcEEEcCCCC-CChhhHHhcc-CCCCCCEEEccCCc-cCccccccccCCCCCCEE
Q 016686 203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLS-SLSKLTNLSIRDAV-LTNSGLGSFKPPRSLKLL 279 (384)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 279 (384)
.++.++.++..+..+....+..++.++.|.+.+|. +.+...+.++ -.++|+.|++++|. |++.+...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 35566666666666655666666666666666653 3332222222 23556666666553 555555555555666666
Q ss_pred EccCCc
Q 016686 280 DLHGGW 285 (384)
Q Consensus 280 ~l~~n~ 285 (384)
.+.+=.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655543
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.86 E-value=0.07 Score=27.03 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=7.3
Q ss_pred CCEEEccCCccC
Q 016686 252 LTNLSIRDAVLT 263 (384)
Q Consensus 252 L~~L~l~~n~l~ 263 (384)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 556666666665
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.79 E-value=0.068 Score=28.31 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=7.2
Q ss_pred CCcEEEccCCCchhHHh
Q 016686 23 SLECLNLSNCTIDSILE 39 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~ 39 (384)
+|++|++++|.|..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444433
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.79 E-value=0.068 Score=28.31 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=7.2
Q ss_pred CCcEEEccCCCchhHHh
Q 016686 23 SLECLNLSNCTIDSILE 39 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~ 39 (384)
+|++|++++|.|..+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 34444444444444433
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.71 E-value=0.092 Score=27.19 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=9.3
Q ss_pred CCccEEEeeCCCCCchhHHHH
Q 016686 92 KALEHLDLSSSMIGDDSVEMV 112 (384)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~ 112 (384)
++|++|++++|++++..+.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555554444433
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.19 E-value=0.27 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=10.5
Q ss_pred CCCCEEEccCCcCCCHHHHHHH
Q 016686 274 RSLKLLDLHGGWLLTEDAILQF 295 (384)
Q Consensus 274 ~~L~~L~l~~n~~~~~~~~~~~ 295 (384)
++|++|+|++|++ +++++..+
T Consensus 2 ~~L~~L~l~~n~i-~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQI-TDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBE-HHHHHHHH
T ss_pred CCCCEEEccCCcC-CHHHHHHh
Confidence 4566666666664 55554443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.87 E-value=0.24 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=16.3
Q ss_pred CCCCcEEEccCCCCCCCC
Q 016686 2 FPRLSFLNLAWTGVTKLP 19 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~ 19 (384)
+++|++|++++|.++.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 578999999999999886
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.87 E-value=0.24 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=16.3
Q ss_pred CCCCcEEEccCCCCCCCC
Q 016686 2 FPRLSFLNLAWTGVTKLP 19 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~ 19 (384)
+++|++|++++|.++.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 578999999999999886
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.58 E-value=0.26 Score=26.18 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=13.5
Q ss_pred CCCCcEEEccCCCCCCCCCCC
Q 016686 2 FPRLSFLNLAWTGVTKLPNIS 22 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~~~~ 22 (384)
+++|+.|+++.|.|+.+.++.
T Consensus 1 L~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 1 LTNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CCccCEEECCCCccceecCcc
Confidence 356777777777776665443
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.89 E-value=0.5 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=18.7
Q ss_pred CCCCCEEEccCCcCCCHHHHHHHH
Q 016686 273 PRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 273 ~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
++.|++|++++|.-+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 367888899998877888776654
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.64 E-value=0.71 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=16.1
Q ss_pred CCCCEEEccCCcCCCHHHHHHHHHh
Q 016686 274 RSLKLLDLHGGWLLTEDAILQFCKM 298 (384)
Q Consensus 274 ~~L~~L~l~~n~~~~~~~~~~~~~~ 298 (384)
++|++|+|++|.+ +.++...++..
T Consensus 2 ~~L~~LdL~~N~i-~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKL-GDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCC-CHHHHHHHHHH
Confidence 4677777777776 66666666554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.18 E-value=0.9 Score=43.48 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCcEEEccCCCchh---HHhhCcCCCCccEEeccCC--CCCchhHHhhhcCCCCccEEEeecCCCC
Q 016686 20 NISSLECLNLSNCTIDS---ILEGNENKAPLAKISLAGT--TFINEREAFLYIETSLLSFLDVSNSSLS 83 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~---~~~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~ls~n~l~ 83 (384)
+.+.+..+++++|++.. +..-....|+|+.|+|++| .+....+.-. .+...|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-LKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh-hcCCCHHHeeecCCccc
Confidence 44556666666665542 2221125566666666666 3332221111 12345666666666653
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.67 E-value=2 Score=41.25 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCCccEEEeecCCCCCcccc----cCCCCccEEEeeCC--CCCch-hHHHHHhccCCccEEEccCCCCC
Q 016686 68 ETSLLSFLDVSNSSLSRFCFL----TQMKALEHLDLSSS--MIGDD-SVEMVACVGANLRNLNLSNTRFS 130 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~~~----~~~~~L~~L~L~~n--~l~~~-~~~~~~~~~~~L~~L~L~~n~l~ 130 (384)
+.|.+..+.|++|++..++.+ ...|+|..|+|++| .+... ....++. ..|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~--l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG--LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC--CCHHHeeecCCccc
Confidence 345555555666655444222 23355566666655 22211 1112222 34555666665553
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.25 E-value=0.042 Score=46.46 Aligned_cols=91 Identities=7% Similarity=-0.042 Sum_probs=68.7
Q ss_pred CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccE
Q 016686 18 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEH 96 (384)
Q Consensus 18 l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~ 96 (384)
+......+.||++.|.+..+...+..++.+..|+++.|.+...+..+. ....+..+++..|..+.. ..+...+.+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~--q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAK--QQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHH--HHHHHHHHHhhccchhhCCccccccCCcch
Confidence 446778889999999887766666677888899999888887776543 556677778877777665 46778888999
Q ss_pred EEeeCCCCCchhHH
Q 016686 97 LDLSSSMIGDDSVE 110 (384)
Q Consensus 97 L~L~~n~l~~~~~~ 110 (384)
+++-.+.+...+..
T Consensus 116 ~e~k~~~~~~~~~~ 129 (326)
T KOG0473|consen 116 NEQKKTEFFRKLFG 129 (326)
T ss_pred hhhccCcchHHHHh
Confidence 99988887644433
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.14 E-value=1.8 Score=22.86 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=7.8
Q ss_pred CCcEEEccCCCCCCCC
Q 016686 4 RLSFLNLAWTGVTKLP 19 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~ 19 (384)
+|+.|+.++|+++.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3445555555544444
No 91
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.34 E-value=0.13 Score=43.62 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=64.9
Q ss_pred cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686 42 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120 (384)
Q Consensus 42 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 120 (384)
......+.||++.|++......+ .-++.+..|+++.|.+... ..+.....+..+++..|..+ ..|..+... +.++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~--s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~-~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNF--SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE-PHPK 114 (326)
T ss_pred hccceeeeehhhhhHHHhhccch--HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcccccc-CCcc
Confidence 36678889999999887665543 3567888899999887665 45666667777888777766 567778888 8999
Q ss_pred EEEccCCCCC
Q 016686 121 NLNLSNTRFS 130 (384)
Q Consensus 121 ~L~L~~n~l~ 130 (384)
++++-++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999888865
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.75 E-value=27 Score=33.28 Aligned_cols=284 Identities=15% Similarity=0.054 Sum_probs=138.2
Q ss_pred CCcEEEccCCCCCC---CCCCCCCcEEEccCCCchh-HHhhCc---CCCCccEEeccCCCCCc-hhHHhhhc-CCCCccE
Q 016686 4 RLSFLNLAWTGVTK---LPNISSLECLNLSNCTIDS-ILEGNE---NKAPLAKISLAGTTFIN-EREAFLYI-ETSLLSF 74 (384)
Q Consensus 4 ~L~~L~l~~n~i~~---l~~~~~L~~L~ls~n~i~~-~~~~~~---~~~~L~~L~l~~n~~~~-~~~~~~~~-~l~~L~~ 74 (384)
.++++|++.|.+.. +.-....--+.+..|..++ +-..+. .-..+++++++.|...+ ++....+. .-.-++.
T Consensus 166 r~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ 245 (553)
T KOG4242|consen 166 RARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFK 245 (553)
T ss_pred hhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhc
Confidence 46778888887663 1100111115566665542 111111 22357788888876654 33222111 1234667
Q ss_pred EEeecCCCCCc----c-cccCCCCccEEEeeCCCCCc----hhHHHHHhcc---CCccEEEccCCCCCchHHHHHHhCC-
Q 016686 75 LDVSNSSLSRF----C-FLTQMKALEHLDLSSSMIGD----DSVEMVACVG---ANLRNLNLSNTRFSSAGVGILAGHL- 141 (384)
Q Consensus 75 L~ls~n~l~~~----~-~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~l- 141 (384)
++.+...+..- + ....-+++...+++.|..+. .+++...... +++ +|++..+....+.+..+.-.+
T Consensus 246 ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla 324 (553)
T KOG4242|consen 246 LDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLA 324 (553)
T ss_pred ccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccc
Confidence 77776655322 1 23344567777777665431 1222222211 455 666666555444333322111
Q ss_pred ----CCCCEEeccCCCCChHHH-HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCC--
Q 016686 142 ----PNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV-- 214 (384)
Q Consensus 142 ----~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-- 214 (384)
..=-.+++..|...+... .+-..-..++++....|...+.....+ .....+..+.+++..-.-
T Consensus 325 ~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg----------k~~~s~s~r~l~agrs~~kq 394 (553)
T KOG4242|consen 325 ENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG----------KRKQSKSGRILKAGRSGDKQ 394 (553)
T ss_pred cccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc----------ceeeccccccccccccCCce
Confidence 111234444554432211 111111237888888887766543310 233445666666655322
Q ss_pred -Cc--ccccccc----cCCCCcEEEcCCCCCChhh---HHhccCCCCCCEEEccCCccCccccc----cccCCCCCCEEE
Q 016686 215 -SD--ATLFPLS----TFKELIHLSLRNASLTDVS---LHQLSSLSKLTNLSIRDAVLTNSGLG----SFKPPRSLKLLD 280 (384)
Q Consensus 215 -~~--~~~~~l~----~~~~L~~L~L~~n~i~~~~---~~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~ 280 (384)
.+ ....... ..--+..+.++.|...... ...+..-+.+..|++++|...+.+.. ......+++.+-
T Consensus 395 vm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ip 474 (553)
T KOG4242|consen 395 VMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIP 474 (553)
T ss_pred eccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCC
Confidence 11 0000011 1223667777777765432 22345567788999999987765433 333335677777
Q ss_pred ccCCcCCCHHHHHHHHHhC
Q 016686 281 LHGGWLLTEDAILQFCKMH 299 (384)
Q Consensus 281 l~~n~~~~~~~~~~~~~~~ 299 (384)
.+.|.. ...++.......
T Consensus 475 ds~n~p-~~~gl~p~~~~~ 492 (553)
T KOG4242|consen 475 DSLNLP-EDPGLGPRNEER 492 (553)
T ss_pred CCCCCc-cccccchhhhhc
Confidence 777765 444444444433
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.56 E-value=14 Score=42.97 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=16.8
Q ss_pred ccCCccCccccccccCCCCCCEEEccCCcCCCHHHH
Q 016686 257 IRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAI 292 (384)
Q Consensus 257 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 292 (384)
|++|+|+......|..+++|+.|+|++|++.|++.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 344444444444444444455555555555444443
No 94
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=38.98 E-value=25 Score=18.48 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=12.8
Q ss_pred CCCEEEccCCcCCCHHHHHHHHHh
Q 016686 275 SLKLLDLHGGWLLTEDAILQFCKM 298 (384)
Q Consensus 275 ~L~~L~l~~n~~~~~~~~~~~~~~ 298 (384)
+|++|.|.+..+..+..+..+..+
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~ 24 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSG 24 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhcc
Confidence 356667766666444444444433
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.30 E-value=91 Score=29.93 Aligned_cols=192 Identities=17% Similarity=0.046 Sum_probs=87.2
Q ss_pred ccEEEeeCCCCCchhHHHHHhcc--CCccEEEccCCCCCchH-H-HHHHhCCCCCCEEeccCCCCC--------hHHHHh
Q 016686 94 LEHLDLSSSMIGDDSVEMVACVG--ANLRNLNLSNTRFSSAG-V-GILAGHLPNLEILSLSGTQID--------DYAISY 161 (384)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~-~-~~~~~~l~~L~~L~l~~n~i~--------~~~~~~ 161 (384)
+.+++++.|.....++.....+. ..++.++.+...+.-+. . ..+.+.-+++++.+++.|... +..-+.
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~ 295 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDT 295 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccc
Confidence 66777777776666665544332 24556666655443211 1 111233446666666665432 111122
Q ss_pred hhCCCCccEEEeeCCcCCcch-hhcc-----------cc----hhhhhhHHhh---cCCCCCCEEEccCCCCCcccccc-
Q 016686 162 MSMMPSLKFIDISNTDIKGFI-QQVG-----------AE----TDLVLSLTAL---QNLNHLERLNLEQTQVSDATLFP- 221 (384)
Q Consensus 162 l~~~~~L~~L~l~~n~l~~~~-~~~~-----------~~----~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~- 221 (384)
+..-.++ +|++..+.....- +.+. +. .+....-.++ ..-..++++....|.+.+.....
T Consensus 296 fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg 374 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG 374 (553)
T ss_pred cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc
Confidence 3333344 5555544432210 0000 00 0111111111 11133677777777766654332
Q ss_pred -cccCCCCcEEEcCCCCCChh-----h--HH--hccCCCCCCEEEccCCccCccccc---cccCCCCCCEEEccCCcC
Q 016686 222 -LSTFKELIHLSLRNASLTDV-----S--LH--QLSSLSKLTNLSIRDAVLTNSGLG---SFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 222 -l~~~~~L~~L~L~~n~i~~~-----~--~~--~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~l~~n~~ 286 (384)
+..-+..+.+.+.+-.-... . +. .-..-.-+..+.++.+......-. ....-+.+..|++++|..
T Consensus 375 k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 375 KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 22345566666654322110 0 00 001223466777777776653222 222336778888888765
Done!