Query 016686
Match_columns 384
No_of_seqs 233 out of 4047
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-40 5.5E-45 336.3 4.8 270 2-286 246-550 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.7E-40 9.3E-45 334.7 6.2 344 2-375 268-724 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.1E-36 1.8E-40 296.2 18.2 270 2-286 56-412 (606)
4 3v47_A TOLL-like receptor 5B a 100.0 2.4E-36 8.4E-41 288.3 11.5 341 7-373 14-413 (455)
5 3t6q_A CD180 antigen; protein- 100.0 7.8E-36 2.7E-40 294.9 13.4 276 69-372 277-564 (606)
6 4eco_A Uncharacterized protein 100.0 3.3E-36 1.1E-40 298.4 5.2 319 20-374 204-584 (636)
7 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-34 5.3E-39 280.5 15.4 154 199-372 321-485 (520)
8 4eco_A Uncharacterized protein 100.0 1.6E-35 5.3E-40 293.5 7.9 316 35-376 196-563 (636)
9 3v47_A TOLL-like receptor 5B a 100.0 8.1E-34 2.8E-38 270.8 17.6 278 3-286 30-359 (455)
10 2z63_A TOLL-like receptor 4, v 100.0 5.3E-35 1.8E-39 286.8 8.8 353 3-374 28-537 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-34 7.9E-39 284.4 13.0 160 197-372 394-562 (606)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-34 8.3E-39 281.6 12.5 343 3-372 31-514 (562)
13 1o6v_A Internalin A; bacterial 100.0 7.3E-33 2.5E-37 264.9 22.2 316 3-369 46-389 (466)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-33 3.7E-38 276.3 16.7 356 3-372 26-514 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 6.8E-34 2.3E-38 287.3 15.7 304 37-375 440-825 (876)
16 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-35 1.3E-39 289.9 5.6 353 3-374 32-539 (606)
17 1ziw_A TOLL-like receptor 3; i 100.0 1E-33 3.5E-38 283.4 15.0 129 2-132 48-186 (680)
18 4fmz_A Internalin; leucine ric 100.0 7E-32 2.4E-36 248.3 24.1 301 2-368 43-346 (347)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.3E-33 1.8E-37 271.4 16.8 358 2-374 4-492 (549)
20 2id5_A Lingo-1, leucine rich r 100.0 2.3E-32 7.9E-37 262.3 20.6 291 3-296 32-342 (477)
21 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-33 8.4E-38 286.5 14.5 127 3-131 24-162 (844)
22 2id5_A Lingo-1, leucine rich r 100.0 5.6E-33 1.9E-37 266.6 15.9 305 5-333 13-322 (477)
23 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-33 4.2E-38 282.8 11.7 345 3-372 25-447 (680)
24 1o6v_A Internalin A; bacterial 100.0 4.5E-32 1.5E-36 259.4 20.5 301 20-372 44-370 (466)
25 4ecn_A Leucine-rich repeat pro 100.0 1E-33 3.5E-38 286.0 9.4 336 1-371 446-843 (876)
26 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-33 5.8E-38 287.7 7.7 252 1-264 46-376 (844)
27 3bz5_A Internalin-J, INLJ; leu 100.0 1E-31 3.4E-36 255.6 15.5 332 2-377 41-396 (457)
28 3o6n_A APL1; leucine-rich repe 100.0 1.5E-31 5E-36 250.1 15.5 281 2-321 44-332 (390)
29 4fmz_A Internalin; leucine ric 100.0 7.1E-30 2.4E-34 234.9 25.9 278 2-320 65-346 (347)
30 1xku_A Decorin; proteoglycan, 100.0 1.9E-30 6.6E-35 237.0 19.3 265 4-288 32-307 (330)
31 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-32 9.4E-37 260.6 7.1 343 2-369 2-412 (461)
32 2z7x_B TOLL-like receptor 1, v 100.0 6E-32 2.1E-36 262.2 9.2 346 6-374 3-462 (520)
33 2z63_A TOLL-like receptor 4, v 100.0 4.8E-32 1.7E-36 265.8 8.5 175 5-182 9-193 (570)
34 3oja_B Anopheles plasmodium-re 100.0 9.1E-31 3.1E-35 257.8 16.5 281 2-321 50-338 (597)
35 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.4E-32 2.5E-36 264.0 7.1 328 20-374 29-491 (562)
36 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-30 1.4E-34 244.5 16.4 295 18-369 38-353 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 2.9E-29 9.9E-34 234.5 20.9 275 2-301 68-365 (390)
38 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-30 1.3E-34 235.4 12.0 263 4-287 34-307 (332)
39 1xku_A Decorin; proteoglycan, 100.0 5E-29 1.7E-33 227.6 19.2 261 3-285 52-330 (330)
40 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-31 1.5E-35 239.4 4.4 249 22-288 50-305 (313)
41 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-29 4.7E-34 251.2 15.1 127 4-132 53-188 (635)
42 2z66_A Variable lymphocyte rec 100.0 2.6E-30 8.8E-35 233.7 7.9 249 6-293 10-267 (306)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-29 4.5E-34 242.1 11.8 314 2-333 27-400 (461)
44 3oja_B Anopheles plasmodium-re 100.0 2.4E-28 8.3E-33 240.5 20.7 274 2-300 74-370 (597)
45 2z80_A TOLL-like receptor 2, v 100.0 5.1E-29 1.8E-33 229.7 13.7 275 2-291 30-318 (353)
46 1jl5_A Outer protein YOPM; leu 100.0 4.4E-28 1.5E-32 230.3 19.6 308 3-376 91-419 (454)
47 1jl5_A Outer protein YOPM; leu 100.0 3.2E-28 1.1E-32 231.3 18.2 302 4-376 72-380 (454)
48 2ft3_A Biglycan; proteoglycan, 100.0 1E-28 3.5E-33 225.8 14.1 260 3-285 54-331 (332)
49 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-29 5.1E-34 250.9 9.0 155 6-162 34-193 (635)
50 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-30 3.3E-34 230.4 3.1 244 3-264 50-306 (313)
51 2z66_A Variable lymphocyte rec 100.0 2.9E-28 9.9E-33 220.2 12.2 223 3-264 28-262 (306)
52 3zyj_A Leucine-rich repeat-con 100.0 7.4E-28 2.5E-32 228.5 15.0 253 23-294 44-299 (440)
53 3zyi_A Leucine-rich repeat-con 100.0 9.1E-28 3.1E-32 228.7 15.4 252 23-293 55-309 (452)
54 2z80_A TOLL-like receptor 2, v 99.9 2.9E-27 9.8E-32 218.0 14.4 252 3-266 52-317 (353)
55 3zyj_A Leucine-rich repeat-con 99.9 8.1E-27 2.8E-31 221.4 17.6 245 4-264 44-293 (440)
56 1ozn_A Reticulon 4 receptor; N 99.9 2E-27 6.9E-32 212.4 12.1 231 25-296 14-247 (285)
57 3zyi_A Leucine-rich repeat-con 99.9 9.4E-27 3.2E-31 221.7 17.4 244 5-264 56-304 (452)
58 4fcg_A Uncharacterized protein 99.9 2.2E-27 7.5E-32 216.3 11.0 233 22-287 81-314 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.9E-31 210.1 13.5 254 23-303 11-265 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-26 9.7E-31 205.0 15.1 219 6-263 14-238 (285)
61 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.3E-31 211.3 12.5 214 70-303 81-304 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-27 1.8E-31 212.9 6.7 238 20-284 32-272 (317)
63 1wwl_A Monocyte differentiatio 99.9 8.7E-27 3E-31 211.0 4.6 247 20-287 41-309 (312)
64 1wwl_A Monocyte differentiatio 99.9 5.5E-27 1.9E-31 212.3 2.2 245 3-265 43-311 (312)
65 3oja_A Leucine-rich immune mol 99.9 4.3E-25 1.5E-29 211.6 15.4 221 43-290 32-253 (487)
66 3oja_A Leucine-rich immune mol 99.9 6.7E-26 2.3E-30 217.3 9.6 236 20-282 32-270 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 7.3E-24 2.5E-28 207.5 23.2 256 4-295 41-304 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-24 9.3E-29 210.6 19.1 246 23-333 41-286 (622)
69 3ogk_B Coronatine-insensitive 99.9 5.3E-24 1.8E-28 209.5 20.0 302 2-327 163-533 (592)
70 3ogk_B Coronatine-insensitive 99.9 3E-24 1E-28 211.4 16.9 292 2-305 191-543 (592)
71 2ca6_A RAN GTPase-activating p 99.9 1.8E-24 6.3E-29 201.7 14.5 244 36-288 23-317 (386)
72 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.9E-28 192.5 18.7 255 45-329 47-315 (336)
73 2ast_B S-phase kinase-associat 99.9 6.4E-24 2.2E-28 194.1 16.7 201 45-260 70-282 (336)
74 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.9E-28 196.3 17.3 236 20-267 30-320 (386)
75 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 190.5 11.4 150 27-181 12-164 (276)
76 3rfs_A Internalin B, repeat mo 99.9 4.8E-24 1.6E-28 189.1 10.0 212 88-333 37-248 (272)
77 2z62_A TOLL-like receptor 4, v 99.9 8.7E-24 3E-28 187.9 11.6 223 49-290 11-240 (276)
78 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.7E-28 194.7 11.9 254 26-287 2-297 (362)
79 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.5E-28 186.3 9.7 196 68-286 39-234 (272)
80 2o6q_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 181.4 14.2 202 46-289 17-220 (270)
81 2o6q_A Variable lymphocyte rec 99.9 6.3E-23 2.2E-27 181.7 13.2 202 22-264 16-219 (270)
82 3goz_A Leucine-rich repeat-con 99.9 9.5E-23 3.2E-27 188.3 14.9 283 49-345 2-321 (362)
83 1p9a_G Platelet glycoprotein I 99.9 9.4E-23 3.2E-27 182.3 13.8 207 68-294 8-215 (290)
84 1p9a_G Platelet glycoprotein I 99.9 4.9E-23 1.7E-27 184.2 11.8 203 18-263 6-208 (290)
85 2p1m_B Transport inhibitor res 99.9 4E-22 1.4E-26 196.2 18.2 292 2-304 155-535 (594)
86 2p1m_B Transport inhibitor res 99.9 1.9E-22 6.4E-27 198.6 14.0 79 2-80 129-221 (594)
87 1h6u_A Internalin H; cell adhe 99.9 5.8E-22 2E-26 178.8 15.3 193 20-240 39-231 (308)
88 1h6u_A Internalin H; cell adhe 99.9 4.5E-22 1.5E-26 179.5 14.2 195 43-266 39-233 (308)
89 4glp_A Monocyte differentiatio 99.9 1.2E-22 4E-27 183.7 9.1 229 43-287 62-307 (310)
90 4glp_A Monocyte differentiatio 99.9 1E-21 3.5E-26 177.5 12.3 225 23-265 65-309 (310)
91 2xwt_C Thyrotropin receptor; s 99.8 1.5E-21 5.2E-26 169.6 8.1 197 46-284 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 6.1E-21 2.1E-25 167.0 11.2 160 117-289 35-194 (251)
93 2xwt_C Thyrotropin receptor; s 99.8 1.7E-21 5.9E-26 169.2 7.5 180 92-288 31-219 (239)
94 3m19_A Variable lymphocyte rec 99.8 2E-20 6.9E-25 163.7 11.8 159 93-265 36-194 (251)
95 1h6t_A Internalin B; cell adhe 99.8 2.2E-19 7.4E-24 160.6 13.1 184 9-218 30-216 (291)
96 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 153.3 10.7 182 119-332 9-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.2E-24 166.6 10.2 237 6-284 12-256 (350)
98 1h6t_A Internalin B; cell adhe 99.8 7E-19 2.4E-23 157.2 14.2 190 48-266 27-216 (291)
99 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7.3E-24 165.0 8.8 216 25-285 12-234 (350)
100 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.4E-24 177.3 6.1 184 8-217 26-212 (605)
101 1m9s_A Internalin B; cell inva 99.8 7.2E-19 2.5E-23 172.0 10.8 192 47-267 23-214 (605)
102 3cvr_A Invasion plasmid antige 99.8 2.9E-18 1E-22 166.0 12.9 194 23-249 60-253 (571)
103 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 163.1 6.0 185 95-295 21-210 (361)
104 2o6s_A Variable lymphocyte rec 99.7 1.7E-18 5.7E-23 147.0 8.4 115 140-273 74-188 (208)
105 2v9t_B SLIT homolog 2 protein 99.7 5.3E-18 1.8E-22 145.1 11.4 161 119-295 13-173 (220)
106 3cvr_A Invasion plasmid antige 99.7 4.3E-18 1.5E-22 164.8 11.9 186 3-225 59-253 (571)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 6.4E-18 2.2E-22 144.6 11.4 161 119-295 13-174 (220)
108 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 139.5 12.1 151 44-215 43-194 (197)
109 1xeu_A Internalin C; cellular 99.7 1.7E-18 5.8E-23 152.4 5.3 163 5-180 21-186 (263)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 4.4E-18 1.5E-22 145.6 7.6 155 95-265 14-168 (220)
111 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.6E-22 140.1 10.2 152 68-263 42-194 (197)
112 2xot_A Amphoterin-induced prot 99.7 9.5E-18 3.3E-22 154.6 9.5 172 6-179 21-202 (361)
113 3sb4_A Hypothetical leucine ri 99.7 2.2E-17 7.7E-22 150.2 10.0 217 44-281 100-328 (329)
114 3e6j_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 138.1 12.7 157 117-290 19-175 (229)
115 1xeu_A Internalin C; cellular 99.7 1E-17 3.4E-22 147.4 6.4 82 166-265 106-187 (263)
116 2v9t_B SLIT homolog 2 protein 99.7 2.3E-17 7.8E-22 141.2 7.6 153 95-264 14-166 (220)
117 3e6j_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 136.3 8.6 135 117-265 40-174 (229)
118 1dce_A Protein (RAB geranylger 99.6 4.6E-19 1.6E-23 172.3 -9.8 207 43-281 347-567 (567)
119 1dce_A Protein (RAB geranylger 99.6 9.7E-18 3.3E-22 163.0 -4.9 196 88-303 345-563 (567)
120 1w8a_A SLIT protein; signaling 99.6 2E-15 6.8E-20 126.2 9.8 135 145-293 11-145 (192)
121 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 121.8 6.9 128 141-282 16-148 (149)
122 4b8c_D Glucose-repressible alc 99.6 7.7E-16 2.6E-20 154.1 6.6 190 157-372 215-408 (727)
123 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.3E-20 124.0 7.3 132 141-286 23-159 (168)
124 3un9_A NLR family member X1; l 99.6 2.8E-15 9.6E-20 138.2 9.6 187 92-286 72-282 (372)
125 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 122.2 8.8 136 43-181 22-162 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 4.8E-15 1.6E-19 118.5 9.6 129 43-174 15-148 (149)
127 4fdw_A Leucine rich hypothetic 99.6 2.8E-14 9.5E-19 132.8 15.0 238 23-285 136-381 (401)
128 3sb4_A Hypothetical leucine ri 99.6 9E-15 3.1E-19 133.0 10.2 236 2-257 48-328 (329)
129 4b8c_D Glucose-repressible alc 99.6 3.5E-16 1.2E-20 156.6 0.6 173 4-183 174-358 (727)
130 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.4E-19 121.3 10.0 136 145-296 13-148 (193)
131 1w8a_A SLIT protein; signaling 99.5 2.3E-14 7.8E-19 119.7 9.8 131 119-265 10-141 (192)
132 2wfh_A SLIT homolog 2 protein 99.5 2.3E-14 7.7E-19 119.8 9.5 125 25-155 13-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.6E-19 118.0 9.0 130 20-155 17-153 (176)
134 2o6r_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 114.3 12.8 132 144-290 9-140 (177)
135 4fdw_A Leucine rich hypothetic 99.5 1.5E-13 5.2E-18 127.8 14.2 239 21-286 112-357 (401)
136 3un9_A NLR family member X1; l 99.5 3.6E-14 1.2E-18 130.7 9.7 188 69-264 71-284 (372)
137 2o6r_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 115.0 10.5 133 118-266 8-140 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 8.1E-14 2.8E-18 114.6 8.0 136 42-180 16-154 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 1.7E-14 5.8E-19 121.1 0.0 118 34-157 37-155 (198)
140 1ds9_A Outer arm dynein; leuci 99.4 6.6E-15 2.3E-19 123.7 -5.1 125 20-148 46-180 (198)
141 3g39_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 104.1 10.6 109 167-290 10-118 (170)
142 2r9u_A Variable lymphocyte rec 99.3 9E-12 3.1E-16 102.0 10.8 108 168-290 14-121 (174)
143 3g39_A Variable lymphocyte rec 99.3 7.4E-12 2.5E-16 102.2 8.1 107 144-265 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 101.3 8.2 106 144-264 14-119 (174)
145 4fs7_A Uncharacterized protein 99.2 2.4E-11 8.1E-16 113.1 9.4 85 197-284 292-376 (394)
146 2ra8_A Uncharacterized protein 99.1 5.5E-10 1.9E-14 102.1 12.0 57 67-125 169-227 (362)
147 2ifg_A High affinity nerve gro 99.1 2.8E-10 9.6E-15 103.9 8.4 94 198-292 27-121 (347)
148 2ra8_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 97.0 14.8 158 20-182 137-323 (362)
149 4gt6_A Cell surface protein; l 99.0 3.8E-09 1.3E-13 98.2 13.9 244 18-285 83-368 (394)
150 2ifg_A High affinity nerve gro 99.0 9.3E-10 3.2E-14 100.5 9.1 103 121-239 12-116 (347)
151 4gt6_A Cell surface protein; l 99.0 3.1E-09 1.1E-13 98.8 12.3 259 1-286 85-390 (394)
152 4fs7_A Uncharacterized protein 98.9 2.1E-09 7.2E-14 99.9 9.5 165 91-279 229-393 (394)
153 3e4g_A ATP synthase subunit S, 98.9 1.6E-09 5.4E-14 87.5 6.9 104 202-305 61-172 (176)
154 1io0_A Tropomodulin; LRR prote 98.9 2.4E-09 8.1E-14 88.4 7.9 89 198-286 61-163 (185)
155 1io0_A Tropomodulin; LRR prote 98.9 3.9E-09 1.3E-13 87.1 8.6 118 140-265 34-166 (185)
156 4h09_A Hypothetical leucine ri 98.7 3.4E-07 1.2E-11 84.4 14.7 82 198-281 259-340 (379)
157 4h09_A Hypothetical leucine ri 98.7 4E-07 1.4E-11 84.0 14.7 140 117-274 217-356 (379)
158 3e4g_A ATP synthase subunit S, 98.5 2.4E-07 8.1E-12 74.7 6.4 82 70-152 61-149 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.6E-12 81.4 2.7 64 43-106 168-234 (267)
160 1pgv_A TMD-1, tropomodulin TMD 98.2 7E-06 2.4E-10 67.4 9.8 87 200-286 68-169 (197)
161 1pgv_A TMD-1, tropomodulin TMD 98.2 5.3E-06 1.8E-10 68.1 8.5 109 69-177 40-168 (197)
162 3rw6_A Nuclear RNA export fact 98.1 4.2E-06 1.5E-10 72.5 5.6 16 201-216 169-184 (267)
163 3rfe_A Platelet glycoprotein I 96.8 0.0013 4.6E-08 50.1 4.7 67 229-297 11-78 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0013 4.3E-08 50.3 4.3 14 47-60 33-46 (130)
165 2lz0_A Uncharacterized protein 60.2 6.8 0.00023 27.7 3.0 44 215-259 9-52 (100)
166 2lz0_A Uncharacterized protein 52.8 13 0.00043 26.3 3.4 49 235-284 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-40 Score=336.33 Aligned_cols=270 Identities=24% Similarity=0.277 Sum_probs=177.9
Q ss_pred CCCCcEEEccCCCCCC-CC--CCCCCcEEEccCCCch-hHHhhCcC-CCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 2 FPRLSFLNLAWTGVTK-LP--NISSLECLNLSNCTID-SILEGNEN-KAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~-l~--~~~~L~~L~ls~n~i~-~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++|++|++++|.+.+ ++ .+++|++|++++|.++ .+|..++. +++|++|++++|.+++..+. .|.++++|++|+
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ 324 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLA 324 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEE
Confidence 5677888888877653 22 5667777777777776 46666654 37777777777776644332 245677777777
Q ss_pred eecCCCCC-cc--cccCCCCccEEEeeCCCCCchhHHHHHhccC-CccEEEccCCCCC----------------------
Q 016686 77 VSNSSLSR-FC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFS---------------------- 130 (384)
Q Consensus 77 ls~n~l~~-~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~---------------------- 130 (384)
+++|.+.+ ++ .+..+++|++|++++|.+.+..|..+..+ + +|+.|++++|.++
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 77776652 22 36666777777777776665555555554 3 5555555555443
Q ss_pred ----chHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCE
Q 016686 131 ----SAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER 206 (384)
Q Consensus 131 ----~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 206 (384)
+..+..+ +.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|. .+..+++|+.
T Consensus 404 n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------~~~~l~~L~~ 470 (768)
T 3rgz_A 404 NGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ------------ELMYVKTLET 470 (768)
T ss_dssp SEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCE
T ss_pred CccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH------------HHcCCCCceE
Confidence 3333332 3455555555555555555555555556666666666665555554 5667777788
Q ss_pred EEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 207 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 207 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
|++++|.+++..|..+..+++|++|++++|++++.+|.+++.+++|++|++++|++++..|..+..+++|+.|++++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 88888877777777777788888888888888777777777788888888888888777777777778888888888776
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-40 Score=334.65 Aligned_cols=344 Identities=19% Similarity=0.178 Sum_probs=278.5
Q ss_pred CCCCcEEEccCCCCC-CCC----C-CCCCcEEEccCCCch-hHHhhCcCCCCccEEeccCCCCC-chhHHhhhcCCCCcc
Q 016686 2 FPRLSFLNLAWTGVT-KLP----N-ISSLECLNLSNCTID-SILEGNENKAPLAKISLAGTTFI-NEREAFLYIETSLLS 73 (384)
Q Consensus 2 l~~L~~L~l~~n~i~-~l~----~-~~~L~~L~ls~n~i~-~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~ 73 (384)
+++|++|++++|.++ .++ . +++|++|++++|.++ .+|..+..+++|++|++++|.++ .++.. .+.++++|+
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~ 346 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLK 346 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCC
Confidence 567788888877765 333 2 477777777777776 45566667777777777777776 34433 245667777
Q ss_pred EEEeecCCCCCc---------------------------ccccC--CCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686 74 FLDVSNSSLSRF---------------------------CFLTQ--MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 124 (384)
Q Consensus 74 ~L~ls~n~l~~~---------------------------~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 124 (384)
+|++++|.+.+. +.+.. +++|++|++++|.+++..|..+..+ ++|+.|++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEEC
Confidence 777776655311 11222 5678888888888888888888888 99999999
Q ss_pred cCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCC
Q 016686 125 SNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHL 204 (384)
Q Consensus 125 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L 204 (384)
++|.+++..+..+ +.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|
T Consensus 426 s~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~------------~l~~l~~L 492 (768)
T 3rgz_A 426 SFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS------------GLSNCTNL 492 (768)
T ss_dssp CSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTC
T ss_pred cCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH------------HHhcCCCC
Confidence 9999987777665 6799999999999999988888999999999999999999988887 68899999
Q ss_pred CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccc--------------
Q 016686 205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF-------------- 270 (384)
Q Consensus 205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-------------- 270 (384)
+.|++++|++++..|..++.+++|++|++++|.+++.+|..++.+++|+.|++++|++++..|..+
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999886655432
Q ss_pred --------------------------------------------------------cCCCCCCEEEccCCcCCCHHHHHH
Q 016686 271 --------------------------------------------------------KPPRSLKLLDLHGGWLLTEDAILQ 294 (384)
Q Consensus 271 --------------------------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~ 294 (384)
..+++|+.|++++|++. +..+.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~- 650 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPK- 650 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCG-
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCH-
Confidence 23467899999999983 22222
Q ss_pred HHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686 295 FCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS 368 (384)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~ 368 (384)
....++.++ .+++++|.++|.+|+.++.++.+ .|+++|.+|+.+ ..+++|+.||+++|+++
T Consensus 651 ~l~~l~~L~-------~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l------~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 651 EIGSMPYLF-------ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM------SALTMLTEIDLSNNNLS 717 (768)
T ss_dssp GGGGCTTCC-------EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG------GGCCCCSEEECCSSEEE
T ss_pred HHhccccCC-------EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH------hCCCCCCEEECcCCccc
Confidence 234566666 78999999999999999998888 899999999998 88999999999999999
Q ss_pred ccCCCCC
Q 016686 369 LARPDDS 375 (384)
Q Consensus 369 ~~~p~~~ 375 (384)
|.+|...
T Consensus 718 g~iP~~~ 724 (768)
T 3rgz_A 718 GPIPEMG 724 (768)
T ss_dssp EECCSSS
T ss_pred ccCCCch
Confidence 9999764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-36 Score=296.19 Aligned_cols=270 Identities=19% Similarity=0.169 Sum_probs=161.2
Q ss_pred CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++|++|++++|.+.. +.++++|++|++++|.+.++ |..+..+++|++|++++|.++++.+. .+.++++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcc-hhccCCcccEE
Confidence 5677777777777653 34677778888877777755 44555778888888888877776443 35677888888
Q ss_pred EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc--EEEccCCCCCchHHHHH--------------
Q 016686 76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR--NLNLSNTRFSSAGVGIL-------------- 137 (384)
Q Consensus 76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~--~L~L~~n~l~~~~~~~~-------------- 137 (384)
++++|.+..+ +.+..+++|++|++++|.+.+..+..+..+ ++|+ .|++++|.+.+..+..+
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh-cccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 8888887765 555568888888888888887777778777 7777 77777777654332211
Q ss_pred ------------------------------------------------------------HhCCCCCCEEeccCCCCChH
Q 016686 138 ------------------------------------------------------------AGHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 138 ------------------------------------------------------------~~~l~~L~~L~l~~n~i~~~ 157 (384)
++.+++|++|++++|.++ .
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 122334444444444443 2
Q ss_pred HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc-ccccCCCCcEEEcCCC
Q 016686 158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLSTFKELIHLSLRNA 236 (384)
Q Consensus 158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~~L~~L~L~~n 236 (384)
.|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+. .+..+++|++|++++|
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQI------------SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGG------------CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CChhhcccccCCEEECccCCcCcCchh------------hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 223344444444444444444443333 344445555555555544432222 2445555555555555
Q ss_pred CCChhh--HHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 237 SLTDVS--LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 237 ~i~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
.+++.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 555443 44455555555555555555555555555555555555555554
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-36 Score=288.28 Aligned_cols=341 Identities=12% Similarity=0.083 Sum_probs=197.5
Q ss_pred EEEccCCCCCCCCCC-CCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCc-hhHHhhhcCCCCccEEEeecCCCC
Q 016686 7 FLNLAWTGVTKLPNI-SSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFIN-EREAFLYIETSLLSFLDVSNSSLS 83 (384)
Q Consensus 7 ~L~l~~n~i~~l~~~-~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~ls~n~l~ 83 (384)
.++.++++++.+|.+ ++|++|++++|.|+++ |..+..+++|++|++++|.+.. +++. .|.++++|++|++++|.+.
T Consensus 14 ~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 14 NAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECTTCTTC
T ss_pred ccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCCCCccC
Confidence 455555555555543 3566666666666654 3344466666666666665542 2222 2445666666666666665
Q ss_pred Cc--ccccCCCCccEEEeeCCCCCchhHHH--HHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686 84 RF--CFLTQMKALEHLDLSSSMIGDDSVEM--VACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 84 ~~--~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
.. ..+..+++|++|++++|.+++..+.. +..+ ++|+.|++++|.+++..+..+++.+++|++|++++|.+++..+
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 54 34555666666666666665544443 5555 6666666666666554444333456666666666666554444
Q ss_pred HhhhC----------------------------------CCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC
Q 016686 160 SYMSM----------------------------------MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE 205 (384)
Q Consensus 160 ~~l~~----------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 205 (384)
..+.. +++|++|++++|.+.+..+..++ .....++++
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---------~~~~~~~L~ 242 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF---------DAIAGTKIQ 242 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH---------HHTTTCCEE
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh---------cccccccee
Confidence 33333 34455555555555544333100 001113344
Q ss_pred EEEccCCCCCcc----------cccccc--cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686 206 RLNLEQTQVSDA----------TLFPLS--TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 273 (384)
Q Consensus 206 ~L~l~~n~l~~~----------~~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 273 (384)
.+++++|...+. ....+. ..++|+++++++|.+++..+..++.+++|++|++++|.+++..+..+..+
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 322 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence 444443322211 000111 12567777887777777777777777888888888888777767777777
Q ss_pred CCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhh
Q 016686 274 RSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSF 347 (384)
Q Consensus 274 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~ 347 (384)
++|++|++++|.+... .......++.++ .+++++|.+++..|..+..++++ .|.+++..++.+
T Consensus 323 ~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~-------~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 391 (455)
T 3v47_A 323 THLLKLNLSQNFLGSI--DSRMFENLDKLE-------VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF-- 391 (455)
T ss_dssp TTCCEEECCSSCCCEE--CGGGGTTCTTCC-------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--
T ss_pred ccCCEEECCCCccCCc--ChhHhcCcccCC-------EEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--
Confidence 7888888888776321 112223455555 56777777777777777766666 667764323334
Q ss_pred HHhhhhhcHHHHHhhhcccccccCCC
Q 016686 348 LDQRLKYSREELLELQYSSLSLARPD 373 (384)
Q Consensus 348 ~~~~~~~~~L~~L~l~~n~l~~~~p~ 373 (384)
..+++|+.|++++|++++.+|.
T Consensus 392 ----~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 392 ----DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ----TTCTTCCEEECCSSCBCCCTTT
T ss_pred ----ccCCcccEEEccCCCcccCCCc
Confidence 5788889999999999888884
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.8e-36 Score=294.91 Aligned_cols=276 Identities=17% Similarity=0.124 Sum_probs=154.1
Q ss_pred CCCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686 69 TSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 69 l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 147 (384)
+++|++|++++|.+..+ ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+...++.+++|++|
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 34444444444444433 234444444555555444444434444444 4555555555544433222222344555555
Q ss_pred eccCCCCChHH--HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc-cccc
Q 016686 148 SLSGTQIDDYA--ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF-PLST 224 (384)
Q Consensus 148 ~l~~n~i~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~ 224 (384)
++++|.+.+.. +..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+. .+..
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE------------AFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT------------TTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH------------HhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 55555554333 33445555555555555555544444 455666666666666666554333 2556
Q ss_pred CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc---cccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCC
Q 016686 225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG---LGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPR 301 (384)
Q Consensus 225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 301 (384)
+++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+... .......++.
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~ 501 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI--DQHAFTSLKM 501 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE--CTTTTTTCTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc--ChhhhccccC
Confidence 666666666666666666666666667777777777666522 13455666677777777665321 1111233444
Q ss_pred ceeecccccccCCCccccCCCCCCchhhhhhh-----hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686 302 IEVWHELSVICPSDQIGSNGPSPSRTSLRASL-----VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 302 l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l-----~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
++ .+++++|++++..|..+..++.+ +|.+++..|+.+ ..+++|+.|++++|++.+..+
T Consensus 502 L~-------~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~------~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 502 MN-------HVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLL------PILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CC-------EEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGH------HHHHTSSEEECTTCCEECSGG
T ss_pred CC-------EEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhc------ccCCCCCEEeCCCCCccccCC
Confidence 44 56777777777777777766654 666666555555 677888888888888877655
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-36 Score=298.38 Aligned_cols=319 Identities=11% Similarity=0.086 Sum_probs=186.6
Q ss_pred CCCCCcEEEccCCCchh------------------HHhhCc--CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 20 NISSLECLNLSNCTIDS------------------ILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~------------------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
++++|++|++++|.+++ +|..++ ++++|++|++++|.+.+..+. .+.++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcC
Confidence 45566666666666655 565555 566666666666655442222 234556666666666
Q ss_pred CC-CCC--c-ccccC------CCCccEEEeeCCCCCchhHH--HHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686 80 SS-LSR--F-CFLTQ------MKALEHLDLSSSMIGDDSVE--MVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 80 n~-l~~--~-~~~~~------~~~L~~L~L~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 147 (384)
|. +++ + ..+.. +++|++|++++|.++ .+|. .+..+ ++|+.|++++|.+++..+ . ++.+++|++|
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 65 554 2 22222 255666666666655 4444 55555 566666666666554444 2 2445566666
Q ss_pred eccCCCCChHHHHhhhCCCC-ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC--CCCCEEEccCCCCCcccccccc-
Q 016686 148 SLSGTQIDDYAISYMSMMPS-LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL--NHLERLNLEQTQVSDATLFPLS- 223 (384)
Q Consensus 148 ~l~~n~i~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~- 223 (384)
++++|.++ ..|..+..+++ |++|++++|.++. +|. .+... ++|+.|++++|.+++..|..+.
T Consensus 359 ~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 359 NLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY-IPN------------IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp ECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS-CCS------------CCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred ECCCCccc-cccHhhhhhcccCcEEEccCCcCcc-cch------------hhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 66666555 33444555555 6666666666653 233 23332 3677777777777766666565
Q ss_pred ------cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC-------CCCCEEEccCCcCCCHH
Q 016686 224 ------TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-------RSLKLLDLHGGWLLTED 290 (384)
Q Consensus 224 ------~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~~~~~~ 290 (384)
.+++|++|++++|.+++..+..+..+++|++|++++|.++......+... ++|++|++++|.+..
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-- 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--
Confidence 56677777777777776544555567777777777777774333333222 277777777777642
Q ss_pred HHHHHH-HhCCCceeecccccccCCCccccCCCCCCchhhhhhh------------hhhcCCCCCCchhhHHhhhhhcHH
Q 016686 291 AILQFC-KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------------VKQKQDPMPMSHSFLDQRLKYSRE 357 (384)
Q Consensus 291 ~~~~~~-~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------------~n~l~~~ip~~~~~~~~~~~~~~L 357 (384)
.+..+. ..++.++ .+++++|.+++ +|..+..++++ .|.+.+.+|+.+ ..+++|
T Consensus 503 lp~~~~~~~l~~L~-------~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l------~~l~~L 568 (636)
T 4eco_A 503 LSDDFRATTLPYLV-------GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI------TLCPSL 568 (636)
T ss_dssp CCGGGSTTTCTTCC-------EEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG------GGCSSC
T ss_pred cChhhhhccCCCcC-------EEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH------hcCCCC
Confidence 111111 2445554 56777777776 77777776666 144566777777 677788
Q ss_pred HHHhhhcccccccCCCC
Q 016686 358 ELLELQYSSLSLARPDD 374 (384)
Q Consensus 358 ~~L~l~~n~l~~~~p~~ 374 (384)
+.|++++|++ +.+|..
T Consensus 569 ~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CEEECCSSCC-CBCCSC
T ss_pred CEEECCCCcC-CccCHh
Confidence 8888888888 667764
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=280.47 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=126.5
Q ss_pred cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh--hhHHhccCCCCCCEEEccCCccCcccc-ccccCCCC
Q 016686 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTNSGL-GSFKPPRS 275 (384)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~ 275 (384)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 678899999999999999888889999999999999999997 456789999999999999999998444 45778899
Q ss_pred CCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCc-hhh
Q 016686 276 LKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMS-HSF 347 (384)
Q Consensus 276 L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~-~~~ 347 (384)
|++|++++|++.. .. ...+ +.++ .+++++|+++ .+|..+..++++ .|.++ .+|.. +
T Consensus 401 L~~L~Ls~N~l~~-~~----~~~l~~~L~-------~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~-- 464 (520)
T 2z7x_B 401 LLSLNMSSNILTD-TI----FRCLPPRIK-------VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF-- 464 (520)
T ss_dssp CCEEECCSSCCCG-GG----GGSCCTTCC-------EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT--
T ss_pred CCEEECcCCCCCc-ch----hhhhcccCC-------EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh--
Confidence 9999999999832 21 1222 3444 6789999998 788888777777 78887 57776 5
Q ss_pred HHhhhhhcHHHHHhhhcccccccCC
Q 016686 348 LDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 348 ~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
..+++|+.|++++|++++..+
T Consensus 465 ----~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 465 ----DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp ----TTCTTCCEEECCSSCBCCCHH
T ss_pred ----ccCCcccEEECcCCCCcccCC
Confidence 688999999999999987654
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-35 Score=293.51 Aligned_cols=316 Identities=10% Similarity=0.072 Sum_probs=250.7
Q ss_pred hhHHhhCcCCCCccEEeccCCCCCc------------------hhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCc
Q 016686 35 DSILEGNENKAPLAKISLAGTTFIN------------------EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKAL 94 (384)
Q Consensus 35 ~~~~~~~~~~~~L~~L~l~~n~~~~------------------~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L 94 (384)
+++|..++++++|++|++++|.+++ +|..+.|.++++|++|++++|.+.+. ..+..+++|
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 3577788899999999999999998 66654444899999999999987665 578899999
Q ss_pred cEEEeeCCC-CCc-hhHHHHHhc-----cCCccEEEccCCCCCchHHH-HHHhCCCCCCEEeccCCCCChHHHHhhhCCC
Q 016686 95 EHLDLSSSM-IGD-DSVEMVACV-----GANLRNLNLSNTRFSSAGVG-ILAGHLPNLEILSLSGTQIDDYAISYMSMMP 166 (384)
Q Consensus 95 ~~L~L~~n~-l~~-~~~~~~~~~-----~~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~ 166 (384)
++|++++|. +++ .+|..+..+ +++|+.|++++|.++ ..+. ..++.+++|++|++++|.+++..| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 988 788887764 279999999999998 4444 234789999999999999987777 888899
Q ss_pred CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEccCCCCCcccccccccCC--CCcEEEcCCCCCChhhH
Q 016686 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNLEQTQVSDATLFPLSTFK--ELIHLSLRNASLTDVSL 243 (384)
Q Consensus 167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~L~~n~i~~~~~ 243 (384)
+|++|++++|.+. .+|. .+..+++ |+.|++++|.++. +|..+...+ +|++|++++|.+++..|
T Consensus 354 ~L~~L~L~~N~l~-~lp~------------~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPA------------NFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EESEEECCSSEEE-ECCT------------TSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CCCEEECCCCccc-cccH------------hhhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcch
Confidence 9999999999988 4455 5788888 9999999999995 666666544 89999999999999888
Q ss_pred Hhcc-------CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686 244 HQLS-------SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ 316 (384)
Q Consensus 244 ~~l~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 316 (384)
..++ .+++|++|++++|.++......+..+++|++|++++|.+.. .....+......--.......+++++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcC
Confidence 8888 78899999999999997555566678999999999999842 11111111100000000223678899
Q ss_pred cccCCCCCCchh--hhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhh------hcccccccCCCCCc
Q 016686 317 IGSNGPSPSRTS--LRASL------VKQKQDPMPMSHSFLDQRLKYSREELLEL------QYSSLSLARPDDSS 376 (384)
Q Consensus 317 n~~~~~~p~~~~--~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~ 376 (384)
|.++ .+|..+. .++++ .|.+++ +|..+ .++++|+.|++ ++|++.+.+|....
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQP------LNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhh------hcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 9998 7888776 66666 788887 89988 78999999999 56888899987654
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.1e-34 Score=270.84 Aligned_cols=278 Identities=15% Similarity=0.193 Sum_probs=169.6
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCch-hHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTID-SIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~-~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
++|++|++++|.+++ +.++++|++|++++|.+. .++ ..+..+++|++|++++|.++++.+. .|.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCEE
Confidence 568888888888775 447888888888888876 453 3455888888888888888876543 35688888888
Q ss_pred EeecCCCCCc--c--cccCCCCccEEEeeCCCCCchhHHH-HHhccCCccEEEccCCCCCchHHHHHH------------
Q 016686 76 DVSNSSLSRF--C--FLTQMKALEHLDLSSSMIGDDSVEM-VACVGANLRNLNLSNTRFSSAGVGILA------------ 138 (384)
Q Consensus 76 ~ls~n~l~~~--~--~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~------------ 138 (384)
++++|.+.+. . .+..+++|++|++++|.+.+..|.. +..+ ++|+.|++++|.+.+..+..+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 8888888763 2 3778888888888888888665654 6667 8888888888887654433221
Q ss_pred ---------------------hCCCCCCEEeccCCCCChHHHHhhhCC---CCccEEEeeCCcCCcchhhcccchhhhhh
Q 016686 139 ---------------------GHLPNLEILSLSGTQIDDYAISYMSMM---PSLKFIDISNTDIKGFIQQVGAETDLVLS 194 (384)
Q Consensus 139 ---------------------~~l~~L~~L~l~~n~i~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 194 (384)
..+++|++|++++|.+++..+..+... ++++.|++++|...+..... ..+..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~ 263 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH----TNFKD 263 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC----CSSCC
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch----hhhcc
Confidence 123679999999999998877766533 45555555555332210000 00000
Q ss_pred H--Hhhc--CCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccc
Q 016686 195 L--TALQ--NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSF 270 (384)
Q Consensus 195 ~--~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 270 (384)
. ..+. ..++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 0 0000 12344555555555544444444444555555555555544444444445555555555555544444444
Q ss_pred cCCCCCCEEEccCCcC
Q 016686 271 KPPRSLKLLDLHGGWL 286 (384)
Q Consensus 271 ~~~~~L~~L~l~~n~~ 286 (384)
..+++|++|++++|.+
T Consensus 344 ~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHI 359 (455)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred cCcccCCEEECCCCcc
Confidence 4445555555555544
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-35 Score=286.82 Aligned_cols=353 Identities=18% Similarity=0.183 Sum_probs=209.9
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++++|++++|.++. +..+++|++|++++|.++++++. +..+++|++|++++|.++.+++. .|..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-hhcCcccccccc
Confidence 357788888887764 34677888888888887776544 44778888888888877776644 356777788888
Q ss_pred eecCCCCCcc--cccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC----CEEec
Q 016686 77 VSNSSLSRFC--FLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL----EILSL 149 (384)
Q Consensus 77 ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~l 149 (384)
+++|.+..++ .+..+++|++|++++|.+.+ ..|..+..+ ++|+.|++++|.+++..+..+ +.+++| +.|++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhccc-CCCCEEeCcCCccceecHHHc-cchhccchhhhhccc
Confidence 8877777663 46777777778877777765 346667777 777777777777665433222 222333 44444
Q ss_pred cCCCCChHHH----------------------------------------------------------------------
Q 016686 150 SGTQIDDYAI---------------------------------------------------------------------- 159 (384)
Q Consensus 150 ~~n~i~~~~~---------------------------------------------------------------------- 159 (384)
++|.+.+..+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 4444332211
Q ss_pred -----------HhhhCCCCccEEEeeCCcCCcchhhcccc----------------------------------------
Q 016686 160 -----------SYMSMMPSLKFIDISNTDIKGFIQQVGAE---------------------------------------- 188 (384)
Q Consensus 160 -----------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 188 (384)
..+..+++|+.|++++|.+.+... ++..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB-CCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhh-hhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 112223344444444443332110 0000
Q ss_pred ------------hhhhhh----HHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhH-HhccCCCC
Q 016686 189 ------------TDLVLS----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSK 251 (384)
Q Consensus 189 ------------~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~~~ 251 (384)
.+.+.. ...+..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 000000 01233444444455544444443222 5555566666666655554433 34556666
Q ss_pred CCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686 252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA 331 (384)
Q Consensus 252 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~ 331 (384)
|++|++++|.+++..+..+..+++|++|++++|.+..+ .+......++.++ .+++++|.+++..|..+..++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~p~~~~~l~~L~-------~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLT-------FLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCC-------EEECTTSCCCEECTTTTTTCT
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc-cchhhhhcccCCC-------EEECCCCccccCChhhhhccc
Confidence 77777777766666666666667777777777765211 1111123344444 567888888887788887777
Q ss_pred hh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCCCC
Q 016686 332 SL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD 374 (384)
Q Consensus 332 ~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 374 (384)
++ .|.+++..|+.+ .++++|+.|++++|++++.+|..
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIF------DRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTT------TTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEeCCCCcCCCCCHHHh------hcccCCcEEEecCCcccCCCcch
Confidence 66 677776655556 67888999999999999888753
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-34 Score=284.36 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=105.9
Q ss_pred hhcCCCCCCEEEccCCCCCcccc-cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc-ccccccCCC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS-GLGSFKPPR 274 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~ 274 (384)
.+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 34556666666666666665544 4566677777777777777766666777777777777777777763 566677777
Q ss_pred CCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhH
Q 016686 275 SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFL 348 (384)
Q Consensus 275 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~ 348 (384)
+|++|++++|.+... .......++.++ .+++++|++++.+|..+..++++ +|+++ .+|+.+
T Consensus 474 ~L~~L~Ls~n~l~~~--~~~~~~~l~~L~-------~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~--- 540 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQI--SWGVFDTLHRLQ-------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL--- 540 (606)
T ss_dssp TCCEEECTTSCCCEE--CTTTTTTCTTCC-------EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG---
T ss_pred CCCEEECCCCcCCcc--ChhhhcccccCC-------EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH---
Confidence 777777777776321 111123445554 56777788877777777776666 66666 567665
Q ss_pred Hhhhhhc-HHHHHhhhcccccccCC
Q 016686 349 DQRLKYS-REELLELQYSSLSLARP 372 (384)
Q Consensus 349 ~~~~~~~-~L~~L~l~~n~l~~~~p 372 (384)
..++ +|+.|++++|++.+..+
T Consensus 541 ---~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 541 ---QHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ---GGSCTTCCEEECCSCCCCCSST
T ss_pred ---hhhcccCcEEEccCCCcccCCc
Confidence 5665 48888888888876555
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-34 Score=281.56 Aligned_cols=343 Identities=17% Similarity=0.189 Sum_probs=249.9
Q ss_pred CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
...+++++++++++.+|. .++|++|++++|.|+++++ .+..+++|++|++++|.++++++. .|.++++|++|++++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSH 109 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTT
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCC
Confidence 345788888888888773 3688888888888887664 556888888888888888887554 366888888888888
Q ss_pred CCCCCcccccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC--CEEeccCCCC--
Q 016686 80 SSLSRFCFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL--EILSLSGTQI-- 154 (384)
Q Consensus 80 n~l~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~i-- 154 (384)
|.++.++.. .+++|++|++++|.+++. .|..+..+ ++|+.|++++|.++.... +.+++| ++|++++|.+
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l-~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNL-TKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGC-TTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCC
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhccc-CcccEEecCCCccccCch----hhhhhceeeEEEeecccccc
Confidence 888877544 788888888888888753 34677777 888888888888765322 234444 7777777665
Q ss_pred ChHHHHhhh-----------------------------------------------------------------------
Q 016686 155 DDYAISYMS----------------------------------------------------------------------- 163 (384)
Q Consensus 155 ~~~~~~~l~----------------------------------------------------------------------- 163 (384)
++..+..+.
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 222111111
Q ss_pred ----------CCCCccEEEeeCCcCCcchhhcccch-----------------------------------------hhh
Q 016686 164 ----------MMPSLKFIDISNTDIKGFIQQVGAET-----------------------------------------DLV 192 (384)
Q Consensus 164 ----------~~~~L~~L~l~~n~l~~~~~~~~~~~-----------------------------------------~~~ 192 (384)
..++|++|++++|.+.+.+|...+.. +.+
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 12367777887777775544432100 000
Q ss_pred hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh--hhHHhccCCCCCCEEEccCCccCccc-ccc
Q 016686 193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD--VSLHQLSSLSKLTNLSIRDAVLTNSG-LGS 269 (384)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~--~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~ 269 (384)
........+++|++|++++|.+++..+..+..+++|++|++++|++++ ..|..+..+++|++|++++|.+++.. ...
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 000001677899999999999999888889999999999999999997 45677899999999999999999844 445
Q ss_pred ccCCCCCCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCC
Q 016686 270 FKPPRSLKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMP 342 (384)
Q Consensus 270 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip 342 (384)
+..+++|++|++++|.+. +.. ...+ +.++ .+++++|+++ .+|..+..++++ +|+++ .+|
T Consensus 424 ~~~l~~L~~L~l~~n~l~-~~~----~~~l~~~L~-------~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLT-GSV----FRCLPPKVK-------VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489 (562)
T ss_dssp CCCCTTCCEEECCSSCCC-GGG----GSSCCTTCS-------EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCC
T ss_pred hcCcccCCEEECCCCCCC-cch----hhhhcCcCC-------EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCC
Confidence 778899999999999983 221 1222 3444 6788999988 688877776666 78888 578
Q ss_pred Cc-hhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686 343 MS-HSFLDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 343 ~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
.. + ..+++|+.|++++|++.+..|
T Consensus 490 ~~~~------~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 490 DGVF------DRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTST------TTCTTCCCEECCSCCBCCCHH
T ss_pred HHHH------hcCCCCCEEEecCCCcCCCcc
Confidence 76 5 788999999999999987655
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.3e-33 Score=264.92 Aligned_cols=316 Identities=22% Similarity=0.277 Sum_probs=210.4
Q ss_pred CCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeec
Q 016686 3 PRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~ 79 (384)
+++++|+++++.++.++ .+++|++|++++|.+++++. +..+++|++|++++|.++++++ +.++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCEEECCC
Confidence 45666666666655443 45566666666666665554 4566666666666666665543 33566666666666
Q ss_pred CCCCCcccccCCCCccEEEeeCCCCCchhH-------------------HHHHhccCCccEEEccCCCCCchHHHHHHhC
Q 016686 80 SSLSRFCFLTQMKALEHLDLSSSMIGDDSV-------------------EMVACVGANLRNLNLSNTRFSSAGVGILAGH 140 (384)
Q Consensus 80 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 140 (384)
|.+...+.+..+++|++|++++|.+.+... ..+..+ ++|+.|++++|.+..... +..
T Consensus 122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~---l~~ 197 (466)
T 1o6v_A 122 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDISV---LAK 197 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC-TTCCEEECCSSCCCCCGG---GGG
T ss_pred CCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccC-CCCCEEECcCCcCCCChh---hcc
Confidence 666555555666666666666665543210 114444 666666666666654321 245
Q ss_pred CCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccc
Q 016686 141 LPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLF 220 (384)
Q Consensus 141 l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 220 (384)
+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|+.|++++|.+++..+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------hhhhcCCCCCEEECCCCccccchh-
Confidence 6667777776666665433 55566677777777666553 246678888999999888887644
Q ss_pred ccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCC
Q 016686 221 PLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHP 300 (384)
Q Consensus 221 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 300 (384)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+..... ...++
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~ 331 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLT 331 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCT
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCc
Confidence 7788889999999998887554 7788899999999998887544 6778889999999998744321 34566
Q ss_pred CceeecccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686 301 RIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 369 (384)
Q Consensus 301 ~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~ 369 (384)
.++ .+++++|.+++. +.+..++++ .|.+++..| + ..+++|+.|++++|++++
T Consensus 332 ~L~-------~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~------~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 332 KLQ-------RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L------ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCC-------EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G------TTCTTCCEEECCCEEEEC
T ss_pred cCC-------EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h------hcCCCCCEEeccCCcccC
Confidence 666 677888888764 456666665 677776544 4 678899999999999987
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-33 Score=276.31 Aligned_cols=356 Identities=16% Similarity=0.177 Sum_probs=203.5
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
++|++|++++|.+++ +..+++|++|++++|.++++++ .+..+++|++|++++|.++++++. .|.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCcEEE
Confidence 467777777777664 3467777777777777776553 445777777777777777776654 245777777777
Q ss_pred eecCCCCCc---ccccCCCCccEEEeeCCCCCchh-HHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 77 VSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDS-VEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 77 ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
+++|.+... ..+..+++|++|++++|.+.+.. +..+..+ ++|++|++++|.+++..+..+ +.+++|++|+++.|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-TSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-cccCeeeccCCcccccChhhh-hccccCceEecccC
Confidence 777776643 34666667777777766632222 2345555 666666666666654333322 23333444444333
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcch---------------------------hhc--------------------
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFI---------------------------QQV-------------------- 185 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~---------------------------~~~-------------------- 185 (384)
.+.......+..+++|++|++++|.+.+.. +..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 333222222223333333333333332210 000
Q ss_pred -----------------c------------------------------------cchhhhhhHH--hhcCCCCCCEEEcc
Q 016686 186 -----------------G------------------------------------AETDLVLSLT--ALQNLNHLERLNLE 210 (384)
Q Consensus 186 -----------------~------------------------------------~~~~~~~~~~--~~~~~~~L~~L~l~ 210 (384)
. ...+.+..++ .+..+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 0 0001111111 23568899999999
Q ss_pred CCCCCccccc---ccccCCCCcEEEcCCCCCChhhH--HhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686 211 QTQVSDATLF---PLSTFKELIHLSLRNASLTDVSL--HQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 211 ~n~l~~~~~~---~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (384)
+|.+++..+. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++. .|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence 9998886543 36678899999999999987643 567888999999999998885 56667777888888888887
Q ss_pred CCCHHHHHHHHHhCCCceeec----------ccccccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhHH
Q 016686 286 LLTEDAILQFCKMHPRIEVWH----------ELSVICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFLD 349 (384)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~ 349 (384)
+...+. .....+..+.+.. .....+++++|+++ .+|. ...++++ +|++++..|+.+
T Consensus 422 l~~l~~--~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~---- 493 (549)
T 2z81_A 422 IRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF---- 493 (549)
T ss_dssp CSCCCT--TSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG----
T ss_pred cccccc--hhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH----
Confidence 632110 0001111111110 01113455556555 4444 2333333 556665444445
Q ss_pred hhhhhcHHHHHhhhcccccccCC
Q 016686 350 QRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 350 ~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
..+++|+.|++++|++.+.+|
T Consensus 494 --~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 --DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --GGCTTCCEEECCSSCBCCCHH
T ss_pred --hcCcccCEEEecCCCccCCCc
Confidence 556666667777776666555
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-34 Score=287.31 Aligned_cols=304 Identities=13% Similarity=0.109 Sum_probs=216.9
Q ss_pred HHhhCcCCCCccEEeccCCCCCc------------------hhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccE
Q 016686 37 ILEGNENKAPLAKISLAGTTFIN------------------EREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEH 96 (384)
Q Consensus 37 ~~~~~~~~~~L~~L~l~~n~~~~------------------~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~ 96 (384)
+|..+.++++|++|++++|.+++ +|..+.|.++++|++|++++|.+.+. ..+..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66777788889999999888887 66654455888899999988876554 46788888999
Q ss_pred EEeeCCC-CCc-hhHHHHHhccC-------CccEEEccCCCCCchHHH-HHHhCCCCCCEEeccCCCCChHHHHhhhCCC
Q 016686 97 LDLSSSM-IGD-DSVEMVACVGA-------NLRNLNLSNTRFSSAGVG-ILAGHLPNLEILSLSGTQIDDYAISYMSMMP 166 (384)
Q Consensus 97 L~L~~n~-l~~-~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~ 166 (384)
|++++|. +++ .+|..+..+ + +|+.|++++|.++ ..+. ..++.+++|++|++++|.++ ..| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhh-hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 9998887 887 778777766 5 8888999888888 4444 12367888888888888887 445 777888
Q ss_pred CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC-CCEEEccCCCCCcccccccc----------------------
Q 016686 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH-LERLNLEQTQVSDATLFPLS---------------------- 223 (384)
Q Consensus 167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~---------------------- 223 (384)
+|+.|++++|.+. .+|. .+..+++ |+.|++++|.++. +|..+.
T Consensus 596 ~L~~L~Ls~N~l~-~lp~------------~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPE------------DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EESEEECCSSCCS-CCCT------------TSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred cceEEECcCCccc-cchH------------HHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccc
Confidence 8888888888877 3444 2444444 5555555554442 222222
Q ss_pred ---------cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC-------CCCCEEEccCCcCC
Q 016686 224 ---------TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-------RSLKLLDLHGGWLL 287 (384)
Q Consensus 224 ---------~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~~~ 287 (384)
.+++|+.|++++|.++......+..+++|+.|++++|.++......+... ++|+.|+|++|++.
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc
Confidence 22367777777777775444445578888888888888885333333222 28889999888874
Q ss_pred CHHHHHHHH-HhCCCceeecccccccCCCccccCCCCCCchhhhhhh------h------hhcCCCCCCchhhHHhhhhh
Q 016686 288 TEDAILQFC-KMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL------V------KQKQDPMPMSHSFLDQRLKY 354 (384)
Q Consensus 288 ~~~~~~~~~-~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l------~------n~l~~~ip~~~~~~~~~~~~ 354 (384)
. .+..+. ..++.++ .+++++|.+++ +|..+..++++ . |.+.+.+|..+ .++
T Consensus 742 ~--lp~~l~~~~l~~L~-------~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l------~~L 805 (876)
T 4ecn_A 742 S--LSDDFRATTLPYLS-------NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI------TTC 805 (876)
T ss_dssp C--CCGGGSTTTCTTCC-------EEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG------GGC
T ss_pred c--chHHhhhccCCCcC-------EEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH------hcC
Confidence 2 112221 2456665 67888999987 78888888777 2 66778888888 789
Q ss_pred cHHHHHhhhcccccccCCCCC
Q 016686 355 SREELLELQYSSLSLARPDDS 375 (384)
Q Consensus 355 ~~L~~L~l~~n~l~~~~p~~~ 375 (384)
++|+.|+|++|++ +.+|...
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCC
T ss_pred CCCCEEECCCCCC-CccCHhh
Confidence 9999999999999 7888754
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-35 Score=289.87 Aligned_cols=353 Identities=16% Similarity=0.143 Sum_probs=199.0
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++++|++++|.+++ +.++++|++|++++|.++++++ .+..+++|++|++++|.++++.+. .|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEE
Confidence 356677777776653 3356667777777776666533 344666777777776666665433 245666666666
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHH--hCC----------
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHL---------- 141 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~l---------- 141 (384)
+++|.+... ..+..+++|++|++++|.+.+ ..|..+..+ ++|++|++++|.+++..+..+. ..+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL-TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC-TTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhc-CCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 666666554 245666666666666666654 345556666 6666666666665543221110 011
Q ss_pred --------------CCCCEEeccCCCCCh-HHHHh---------------------------------------------
Q 016686 142 --------------PNLEILSLSGTQIDD-YAISY--------------------------------------------- 161 (384)
Q Consensus 142 --------------~~L~~L~l~~n~i~~-~~~~~--------------------------------------------- 161 (384)
.+|++|++++|.+.+ ..+..
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 134444444443321 11111
Q ss_pred ---------------------------------hhCCCCccEEEeeCCcCCcchhhcc----------------------
Q 016686 162 ---------------------------------MSMMPSLKFIDISNTDIKGFIQQVG---------------------- 186 (384)
Q Consensus 162 ---------------------------------l~~~~~L~~L~l~~n~l~~~~~~~~---------------------- 186 (384)
+..+++|++|++++|.+.. +|...
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~-lp~~~l~~L~~L~l~~n~~~~~~~~~~ 348 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDLPFLKSLTLTMNKGSISFKKVA 348 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS-CCCCCCSSCCEEEEESCSSCEECCCCC
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc-cccCCCCccceeeccCCcCccchhhcc
Confidence 1122233344444443311 11100
Q ss_pred --------cchhhhhh----HHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhH-HhccCCCCCC
Q 016686 187 --------AETDLVLS----LTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSL-HQLSSLSKLT 253 (384)
Q Consensus 187 --------~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~-~~l~~~~~L~ 253 (384)
...+.+.. ...+..+++|++|++++|.+++ .+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 00011100 0133344555555555555444 23455566666666666666665544 4566677777
Q ss_pred EEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686 254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 333 (384)
Q Consensus 254 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l 333 (384)
+|++++|.+++..+..+..+++|++|++++|.+.. ..+......++.++ .+++++|.+++..|..+..++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~-------~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLT-------FLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCC-------EEECTTSCCCEECTTTTTTCTTC
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC-cchHHhhccCCCCC-------EEECCCCcCCccChhhhcccccC
Confidence 77777777777666667777777777777777622 11111122344444 67788888888778877777766
Q ss_pred ------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCCCC
Q 016686 334 ------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARPDD 374 (384)
Q Consensus 334 ------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 374 (384)
.|.+++.+|..+ ..+++|+.|++++|+++ .+|+.
T Consensus 500 ~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHY------NQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp CEEECCSSCCSCEEGGGT------TTCTTCCEEECTTSCCC-CEESC
T ss_pred CEEECCCCcCCCcCHHHc------cCCCcCCEEECCCCcCc-ccCHh
Confidence 677776667777 77888999999999987 55554
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-33 Score=283.40 Aligned_cols=129 Identities=21% Similarity=0.314 Sum_probs=83.2
Q ss_pred CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++|++|++++|.++++. ++++|++|++++|.++.+|.. +..+++|++|++++|.++++++. .|.++++|++|
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 126 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNLITL 126 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC-TTTTCTTCCEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh-HccccCCCCEE
Confidence 456666666666666542 466777777777777766654 44677777777777777666543 35567777777
Q ss_pred EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHH--hccCCccEEEccCCCCCch
Q 016686 76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVA--CVGANLRNLNLSNTRFSSA 132 (384)
Q Consensus 76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~ 132 (384)
++++|.+... ..+..+++|++|++++|.+++..+..+. .+ ++|+.|++++|.+++.
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEF 186 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT-CEESEEECTTCCCCCB
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc-ccccEEECCCCccccc
Confidence 7777766655 3456677777777777777665555543 22 5677777777665543
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7e-32 Score=248.32 Aligned_cols=301 Identities=17% Similarity=0.239 Sum_probs=244.3
Q ss_pred CCCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 2 FPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
+++|++|+++++.+..++ .+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+.++++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~---~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch---HHcCCCcCCEEECc
Confidence 578999999999888755 68899999999999998876 679999999999999998875 25689999999999
Q ss_pred cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
+|.+...+.+..+++|++|++++|......+ .+..+ ++|+.|++++|.+..... ++.+++|++|++++|.+.+..
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNM-TGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTC-TTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCG
T ss_pred CCcccCchhhccCCceeEEECCCCCCccccc-chhhC-CCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccc
Confidence 9999888778999999999999996554333 36777 899999999999876554 367899999999999988654
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
+ +..+++|+.+++++|.+.+.. .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDIT--------------PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred c--ccCCCccceeecccCCCCCCc--------------hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 3 788999999999999887653 25678899999999999988644 78899999999999999
Q ss_pred ChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccc
Q 016686 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIG 318 (384)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~ 318 (384)
++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.. ..+ .....++.++ .+++++|.
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~-~~~-~~l~~l~~L~-------~L~L~~n~ 322 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN-EDM-EVIGGLTNLT-------TLFLSQNH 322 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG-GGH-HHHHTCTTCS-------EEECCSSS
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC-cCh-hHhhccccCC-------EEEccCCc
Confidence 875 4688899999999999999875 457788999999999999833 222 3345677776 67888888
Q ss_pred cCCCCCCchhhhhhhhhhcCCCCCCchhhHHhhhhhcHHHHHhhhccccc
Q 016686 319 SNGPSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLS 368 (384)
Q Consensus 319 ~~~~~p~~~~~~~~l~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~ 368 (384)
+++..| + ..+++|+.|++++|+++
T Consensus 323 l~~~~~--------------------~------~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--------------------L------ASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--------------------G------GGCTTCSEESSSCC---
T ss_pred cccccC--------------------h------hhhhccceeehhhhccc
Confidence 775322 2 46778888999999875
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.3e-33 Score=271.43 Aligned_cols=358 Identities=13% Similarity=0.147 Sum_probs=258.6
Q ss_pred CCCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 2 FPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
|+.....|.++++++.+|. .++|++|++++|.+++++ ..+..+++|++|++++|.++++++. .|.++++|++|+++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECT
T ss_pred CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECC
Confidence 4556668889999998873 468999999999999874 4566999999999999999988765 46799999999999
Q ss_pred cCCCCCcc--cccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCC
Q 016686 79 NSSLSRFC--FLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 155 (384)
Q Consensus 79 ~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~ 155 (384)
+|.+...+ .+..+++|++|++++|.+++. .+..+..+ ++|+.|++++|.+.+..+...++.+++|++|++++|.++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99998883 489999999999999999853 45567777 999999999998444444323467999999999999999
Q ss_pred hHHHHhhhCCCCccEEEeeCCcCCcchhhccc----------chhhhhhH------------------------------
Q 016686 156 DYAISYMSMMPSLKFIDISNTDIKGFIQQVGA----------ETDLVLSL------------------------------ 195 (384)
Q Consensus 156 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----------~~~~~~~~------------------------------ 195 (384)
+..+..+..+++|++|+++.|.+.......+. ..+.+...
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 88888999999999999999987644322100 01111100
Q ss_pred ---Hh-----------------------------------------------------------hcCCCCCCEEEccCCC
Q 016686 196 ---TA-----------------------------------------------------------LQNLNHLERLNLEQTQ 213 (384)
Q Consensus 196 ---~~-----------------------------------------------------------~~~~~~L~~L~l~~n~ 213 (384)
.. +...++|+.+++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 00 0011345666666666
Q ss_pred CCccccccc-ccCCCCcEEEcCCCCCChhhHHh---ccCCCCCCEEEccCCccCcccc--ccccCCCCCCEEEccCCcCC
Q 016686 214 VSDATLFPL-STFKELIHLSLRNASLTDVSLHQ---LSSLSKLTNLSIRDAVLTNSGL--GSFKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 214 l~~~~~~~l-~~~~~L~~L~L~~n~i~~~~~~~---l~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~ 287 (384)
++.. |..+ ..+++|++|++++|++++..+.. ++.+++|++|++++|.+++..+ ..+..+++|++|++++|++.
T Consensus 322 l~~i-p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VFLV-PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCC-CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cccC-CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 6543 4344 57999999999999999876543 6789999999999999988643 45788899999999999984
Q ss_pred CHHHHHHHHHhCCCce---eecc-----------cccccCCCccccCCCCCCchhhhhhh---hhhcCCCCCCchhhHHh
Q 016686 288 TEDAILQFCKMHPRIE---VWHE-----------LSVICPSDQIGSNGPSPSRTSLRASL---VKQKQDPMPMSHSFLDQ 350 (384)
Q Consensus 288 ~~~~~~~~~~~~~~l~---~~~~-----------~~~~~~l~~n~~~~~~p~~~~~~~~l---~n~l~~~ip~~~~~~~~ 350 (384)
.. ......++.++ +..+ ....+++++|++++. +..+.+++.+ +|+++ .+|+.
T Consensus 401 ~l---p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~-~ip~~------ 469 (549)
T 2z81_A 401 PM---PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLK-TLPDA------ 469 (549)
T ss_dssp CC---CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCS-SCCCG------
T ss_pred cC---ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCCccC-cCCCc------
Confidence 31 11111222222 1111 122344455555543 2233344444 67776 56763
Q ss_pred hhhhcHHHHHhhhcccccccCCCC
Q 016686 351 RLKYSREELLELQYSSLSLARPDD 374 (384)
Q Consensus 351 ~~~~~~L~~L~l~~n~l~~~~p~~ 374 (384)
..+++|+.|++++|++++..|..
T Consensus 470 -~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 470 -SLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp -GGCTTCCEEECCSSCCCCCCTTG
T ss_pred -ccCccCCEEecCCCccCCcCHHH
Confidence 36888999999999999877754
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=262.35 Aligned_cols=291 Identities=19% Similarity=0.184 Sum_probs=199.1
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++++|++++|.++. +..+++|++|++++|.++++ |..+..+++|++|++++|.++.++.. .|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEEE
Confidence 356777777777664 34567777777777777665 44455777777777777777766554 255677777777
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQI 154 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i 154 (384)
+++|.+... ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++.....+ +.+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-NSLEQLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-TTCCEEEEESCCCSSCCHHHH-TTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-CCCCEEECCCCcCcccChhHh-cccCCCcEEeCCCCcC
Confidence 777776655 356666777777777777666555556666 677777777776665444433 4566677777666666
Q ss_pred ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccc----------hhhhhhHH--hhcCCCCCCEEEccCCCCCccccccc
Q 016686 155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAE----------TDLVLSLT--ALQNLNHLERLNLEQTQVSDATLFPL 222 (384)
Q Consensus 155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----------~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (384)
.+..+..+..+++|+.|++++|...+..+...+. .+.+..++ .+..+++|+.|++++|.+++..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 6554445555555555555554433222211000 11111111 57788899999999999988877788
Q ss_pred ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686 223 STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 223 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+++....+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 88999999999999999888888999999999999999999877778888899999999999987766554443
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=286.54 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=66.1
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCC-chhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCT-IDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~-i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++++||+++|.++. ++++++|++|++++|. +..+ |..+.++++|++|++++|.+.++.+. .|.++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEe
Confidence 456666666665553 3355566666666553 2233 33344555666666666555554332 24455555555
Q ss_pred EeecCCCCCc--c--cccCCCCccEEEeeCCCCCchhH-HHHHhccCCccEEEccCCCCCc
Q 016686 76 DVSNSSLSRF--C--FLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTRFSS 131 (384)
Q Consensus 76 ~ls~n~l~~~--~--~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~ 131 (384)
++++|.+.+. . .+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFL 162 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCe
Confidence 5555555432 1 25555555555555555544322 234444 555555555555443
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=266.61 Aligned_cols=305 Identities=15% Similarity=0.110 Sum_probs=256.3
Q ss_pred CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
-+.++.++++++.+|. .+++++|++++|.+++++. .+..+++|++|++++|.++++.+. .|.++++|++|++++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCc
Confidence 3578889999998873 4589999999999998754 556999999999999999987654 46799999999999999
Q ss_pred CCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686 82 LSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 82 l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
+..++ .+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|.+++..+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccCh
Confidence 98883 57899999999999999998878888888 999999999999987666554 578999999999999998888
Q ss_pred HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|...+..+.......+|++|++++|.++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh------------hcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 8899999999999999999887766 6888999999999999877777766666679999999999999
Q ss_pred hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcccc
Q 016686 240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGS 319 (384)
Q Consensus 240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~ 319 (384)
+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++... .......++.++ .+++++|.+
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~-------~L~L~~N~l 308 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV--EPYAFRGLNYLR-------VLNVSGNQL 308 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE--CTTTBTTCTTCC-------EEECCSSCC
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE--CHHHhcCcccCC-------EEECCCCcC
Confidence 87778899999999999999999988888888999999999999987431 111223455555 678888888
Q ss_pred CCCCCCchhhhhhh
Q 016686 320 NGPSPSRTSLRASL 333 (384)
Q Consensus 320 ~~~~p~~~~~~~~l 333 (384)
++..+..+..++++
T Consensus 309 ~~~~~~~~~~l~~L 322 (477)
T 2id5_A 309 TTLEESVFHSVGNL 322 (477)
T ss_dssp SCCCGGGBSCGGGC
T ss_pred ceeCHhHcCCCccc
Confidence 86555555555554
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-33 Score=282.81 Aligned_cols=345 Identities=18% Similarity=0.178 Sum_probs=200.5
Q ss_pred CCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++++|++++|.+++++ ++++|++|++++|.+++++ ..+..+++|++|++++|.++.+++. .|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT-TTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh-hhccCCCCCEEE
Confidence 36777777777776543 5677777777777777653 3344777777777777777776653 355777777777
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH-hCCCCCCEEeccCCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA-GHLPNLEILSLSGTQ 153 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~ 153 (384)
+++|.+..+ ..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+++..+..+. ..+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 777777666 256777777777777777776655556666 7777777777777765554432 134677777777776
Q ss_pred CChHHHHhhhCC---------------------------CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC--CC
Q 016686 154 IDDYAISYMSMM---------------------------PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN--HL 204 (384)
Q Consensus 154 i~~~~~~~l~~~---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~--~L 204 (384)
+++..+..+..+ ++|+.|++++|.+.+..+. .+..++ +|
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~------------~~~~l~~~~L 250 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT------------TFLGLKWTNL 250 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT------------TTGGGGGSCC
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh------------HhhccCcCCC
Confidence 665444433322 3444555555555444333 233332 36
Q ss_pred CEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccC---------------------------------CCC
Q 016686 205 ERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS---------------------------------LSK 251 (384)
Q Consensus 205 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------------------------------~~~ 251 (384)
+.|++++|.+++..+..++.+++|++|++++|.+++..+..+.. +++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 66666666666655555666666666666666665554444444 444
Q ss_pred CCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686 252 LTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA 331 (384)
Q Consensus 252 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~ 331 (384)
|++|++++|.+++..+..|..+++|++|++++|.+.........+..+. ......+++++|.+++..|..+..++
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~-----~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-----HSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT-----TSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc-----cCcCceEECCCCCCCeEChhhhhCCC
Confidence 4445555555554444445555555555555554210000000000000 00112456667777776677666666
Q ss_pred hh------hhhcCCCCCC-chhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686 332 SL------VKQKQDPMPM-SHSFLDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 332 ~l------~n~l~~~ip~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
++ .|.+++.+|. .+ ..+++|+.|++++|++.+..|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEW------RGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGG------TTCTTCCEEECCSCSEEECCT
T ss_pred CCCEEeCCCCcCccccCcccc------cCcccccEEecCCCCcceeCh
Confidence 65 5666555553 24 566667777777777655433
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-32 Score=259.44 Aligned_cols=301 Identities=22% Similarity=0.259 Sum_probs=226.3
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 99 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L 99 (384)
.+++++.|+++++.+..++ .+..+++|++|++++|.++.+++ +.++++|++|++++|.+...+.+..+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChhhcCCCCCCEEEC
Confidence 3678999999999999886 46689999999999999998875 5599999999999999998877999999999999
Q ss_pred eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHH--------------------HhCCCCCCEEeccCCCCChHHH
Q 016686 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGIL--------------------AGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--------------------~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
++|.+.+..+ +..+ ++|+.|++++|.+.+... + ++.+++|++|++++|.+.+.
T Consensus 120 ~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 192 (466)
T 1o6v_A 120 FNNQITDIDP--LKNL-TNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-- 192 (466)
T ss_dssp CSSCCCCCGG--GTTC-TTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred CCCCCCCChH--HcCC-CCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--
Confidence 9999986543 7777 999999999998765321 1 12345555555555555433
Q ss_pred HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++. ..+..+++|++|++++|.++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDIT--------------PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCG--------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred hhhccCCCCCEEEecCCcccccc--------------cccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 23455556666666666555442 244577788888888877764 35677888888888888887
Q ss_pred hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcccc
Q 016686 240 DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGS 319 (384)
Q Consensus 240 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~ 319 (384)
+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++..... ...++.++ .+++++|.+
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~-------~L~L~~n~l 321 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLT-------YLTLYFNNI 321 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCS-------EEECCSSCC
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCC-------EEECcCCcC
Confidence 7554 7788888888888888887544 6778888899998888744221 34566666 678888988
Q ss_pred CCCCCCchhhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686 320 NGPSPSRTSLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 320 ~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
++..| +..++++ .|.+++. ..+ ..+++|+.|++++|++++..|
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l------~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSL------ANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGG------TTCTTCCEEECCSSCCCBCGG
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhh------ccCCCCCEEeCCCCccCccch
Confidence 87665 5555555 5666643 233 688999999999999998877
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-33 Score=286.04 Aligned_cols=336 Identities=13% Similarity=0.105 Sum_probs=264.3
Q ss_pred CCCCCcEEEccCCCCCC------------------CC------CCCCCcEEEccCCCch-hHHhhCcCCCCccEEeccCC
Q 016686 1 MFPRLSFLNLAWTGVTK------------------LP------NISSLECLNLSNCTID-SILEGNENKAPLAKISLAGT 55 (384)
Q Consensus 1 ~l~~L~~L~l~~n~i~~------------------l~------~~~~L~~L~ls~n~i~-~~~~~~~~~~~L~~L~l~~n 55 (384)
++++|++|++++|.+++ +| ++++|++|++++|.+. .+|..+.++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 37899999999999988 54 6889999999999865 68888889999999999999
Q ss_pred C-CCc--hhHHhh-----hcCCCCccEEEeecCCCCCcc---cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEc
Q 016686 56 T-FIN--EREAFL-----YIETSLLSFLDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNL 124 (384)
Q Consensus 56 ~-~~~--~~~~~~-----~~~l~~L~~L~ls~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 124 (384)
. +++ +|..+. +..+++|++|++++|.+..++ .+..+++|+.|++++|.++ .+| .+..+ ++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L-~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN-VKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT-SEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC-CcceEEEC
Confidence 8 886 554322 234569999999999999775 4899999999999999998 666 77777 99999999
Q ss_pred cCCCCCchHHHHHHhCCCC-CCEEeccCCCCChHHHHhhhCCC--CccEEEeeCCcCCcchhhcccchhhhhhHHhhc--
Q 016686 125 SNTRFSSAGVGILAGHLPN-LEILSLSGTQIDDYAISYMSMMP--SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-- 199 (384)
Q Consensus 125 ~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~-- 199 (384)
++|.+. ..+..+ ..+++ |++|++++|.++ ..|..+...+ +|+.|++++|.+.+.++... ..+.
T Consensus 603 s~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------~~l~~~ 670 (876)
T 4ecn_A 603 DYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS---------CSMDDY 670 (876)
T ss_dssp CSSCCS-CCCTTS-CEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS---------SCTTTC
T ss_pred cCCccc-cchHHH-hhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch---------hhhccc
Confidence 999998 445444 56788 999999999988 5566665554 49999999999987655310 0112
Q ss_pred CCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccC-------CCCCCEEEccCCccCcccccccc-
Q 016686 200 NLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSS-------LSKLTNLSIRDAVLTNSGLGSFK- 271 (384)
Q Consensus 200 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------~~~L~~L~l~~n~l~~~~~~~~~- 271 (384)
.+++|+.|++++|.++..+...+..+++|+.|++++|.++......+.. +++|++|++++|+++. .|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~ 749 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRA 749 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGST
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhh
Confidence 3458999999999999754444558899999999999998543333332 2389999999999994 666666
Q ss_pred -CCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCC------CccccCCCCCCchhhhhhh------hhhcC
Q 016686 272 -PPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPS------DQIGSNGPSPSRTSLRASL------VKQKQ 338 (384)
Q Consensus 272 -~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l------~~n~~~~~~p~~~~~~~~l------~n~l~ 338 (384)
.+++|+.|+|++|.+.. +......++.++ .+++ ++|.+.+.+|..+..++++ .|.+
T Consensus 750 ~~l~~L~~L~Ls~N~L~~---lp~~l~~L~~L~-------~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS---FPTQPLNSSQLK-------AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp TTCTTCCEEECCSSCCSS---CCCGGGGCTTCC-------EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred ccCCCcCEEEeCCCCCCc---cchhhhcCCCCC-------EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 88999999999999854 222233556665 4455 4588999999999988887 7888
Q ss_pred CCCCCchhhHHhhhhhcHHHHHhhhcccccccC
Q 016686 339 DPMPMSHSFLDQRLKYSREELLELQYSSLSLAR 371 (384)
Q Consensus 339 ~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 371 (384)
+.+|..+ .++|+.|||++|++...-
T Consensus 819 ~~Ip~~l--------~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 819 RKVDEKL--------TPQLYILDIADNPNISID 843 (876)
T ss_dssp CBCCSCC--------CSSSCEEECCSCTTCEEE
T ss_pred CccCHhh--------cCCCCEEECCCCCCCccC
Confidence 6889987 268999999999986543
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.7e-33 Score=287.72 Aligned_cols=252 Identities=17% Similarity=0.220 Sum_probs=183.5
Q ss_pred CCCCCcEEEccCCCCC------CCCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCc-hhHHhhhcCCCCc
Q 016686 1 MFPRLSFLNLAWTGVT------KLPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFIN-EREAFLYIETSLL 72 (384)
Q Consensus 1 ~l~~L~~L~l~~n~i~------~l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~l~~L 72 (384)
.+++|++|++++|... .+.++++|++|++++|.+..+ |..+..+++|++|++++|.+++ .+....|.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 4789999999999432 366899999999999999876 6667799999999999999986 3333236789999
Q ss_pred cEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhcc-CC------------------------------
Q 016686 73 SFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVG-AN------------------------------ 118 (384)
Q Consensus 73 ~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~------------------------------ 118 (384)
++|++++|.+... ..+..+++|++|++++|.+++..+..+..+. ++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 9999999998776 3688999999999999988765444433220 12
Q ss_pred ccEEEccCCCCCchHHHHHHhC-------------------------------------CCCCCEEeccCCCCChHHHHh
Q 016686 119 LRNLNLSNTRFSSAGVGILAGH-------------------------------------LPNLEILSLSGTQIDDYAISY 161 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~-------------------------------------l~~L~~L~l~~n~i~~~~~~~ 161 (384)
|+.|++++|.+++..+..+... .++|+.|++++|.+.+..+..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 6666666665543322221110 246777777777776665666
Q ss_pred hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh
Q 016686 162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241 (384)
Q Consensus 162 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~ 241 (384)
+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 353 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADE------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTT------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChH------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence 66777777777777777766665 567777777777777777776667777777777777777777776
Q ss_pred hHHhccCCCCCCEEEccCCccCc
Q 016686 242 SLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
.+..+..+++|++|++++|.+++
T Consensus 354 ~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 354 QDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSSCSCSCCCCCEEEEETCCSCC
T ss_pred ChhhhcCCCCCCEEECCCCCCCc
Confidence 66667777777777777777654
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1e-31 Score=255.60 Aligned_cols=332 Identities=15% Similarity=0.116 Sum_probs=226.0
Q ss_pred CCCCcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 2 FPRLSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
+++|++|++++|.+++++ .+++|++|++++|.+++++ +..+++|++|++++|.+++++ +.++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee----cCCCCcCCEEECC
Confidence 578999999999988765 6789999999999999875 678999999999999998863 5589999999999
Q ss_pred cCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 79 NSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 79 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
+|.+..++ +..+++|++|++++|.+++. .+..+ ++|+.|++++|...+... ++.+++|++|++++|.+++..
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l---~l~~l-~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEI---DVSHN-TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCC---CCTTC-TTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCeec-CCCCCcCCEEECCCCcccee---ccccC-CcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec
Confidence 99998875 88899999999999999864 25666 899999999995433331 356889999999999888642
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
+..+++|+.|++++|.+++. .+..+++|+.|++++|++++. | +..+++|++|++++|++
T Consensus 187 ---l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 187 ---VSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred ---cccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcC
Confidence 77888899999999988875 356778888888888888873 3 67788888888888888
Q ss_pred ChhhHHhccCCC-------CCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeec-cccc
Q 016686 239 TDVSLHQLSSLS-------KLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWH-ELSV 310 (384)
Q Consensus 239 ~~~~~~~l~~~~-------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~-~~~~ 310 (384)
++..+..+..+. +|+.|++++|.+.+..| +..+++|+.|++++|.....- + .-...+..+.+.. ....
T Consensus 246 ~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l-~-~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL-D-CQAAGITELDLSQNPKLV 321 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE-E-CTTCCCSCCCCTTCTTCC
T ss_pred CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee-c-cCCCcceEechhhcccCC
Confidence 875433332222 33344444444333332 345566777777776532100 0 0000111111100 0111
Q ss_pred ccCCCccccCCCCCCchhhhhhh------hhhcCCCCCCchhhH-------HhhhhhcHHHHHhhhcccccccCCCCCcc
Q 016686 311 ICPSDQIGSNGPSPSRTSLRASL------VKQKQDPMPMSHSFL-------DQRLKYSREELLELQYSSLSLARPDDSST 377 (384)
Q Consensus 311 ~~~l~~n~~~~~~p~~~~~~~~l------~n~l~~~ip~~~~~~-------~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 377 (384)
.+++++|++++. + ++.++++ .|++++ ++.- ..+ ....++..++.+++++|+++|.+|.....
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~~L-~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-FSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-CTTG-GGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCC-cccc-ccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 445566666653 2 4444444 455553 2211 000 00124567788999999999999976543
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-31 Score=250.12 Aligned_cols=281 Identities=19% Similarity=0.232 Sum_probs=215.5
Q ss_pred CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++++.|+++++.++.++ .+++|++|++++|.+..++. .+..+++|++|++++|.++++++. .|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCEE
Confidence 467888888888888765 47888899998888887765 455888889999988888887655 35688888999
Q ss_pred EeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC
Q 016686 76 DVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 153 (384)
Q Consensus 76 ~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 153 (384)
++++|.+..++ .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++.. .+.+++|++|++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEECCCCcCCccc----cccccccceeeccccc
Confidence 99888888773 36778888899998888887667677777 88889999888887653 2457888888888888
Q ss_pred CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686 154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 233 (384)
Q Consensus 154 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 233 (384)
+++. ...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|++|++
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEEECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred cccc-----CCCCcceEEECCCCeeeecccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 7642 3456788888888888765322 346788999999888874 46778888999999
Q ss_pred CCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccC
Q 016686 234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP 313 (384)
Q Consensus 234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (384)
++|.+++..+..+..+++|++|++++|++++. +..+..+++|++|++++|++...+ .. ...++.++ .++
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~l~~L~-------~L~ 324 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE--RN-QPQFDRLE-------NLY 324 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG--GG-HHHHTTCS-------EEE
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecC--cc-ccccCcCC-------EEE
Confidence 99988888788888888999999999888874 445567788999999988874321 11 23345555 567
Q ss_pred CCccccCC
Q 016686 314 SDQIGSNG 321 (384)
Q Consensus 314 l~~n~~~~ 321 (384)
+++|.+++
T Consensus 325 L~~N~i~~ 332 (390)
T 3o6n_A 325 LDHNSIVT 332 (390)
T ss_dssp CCSSCCCC
T ss_pred CCCCccce
Confidence 77777764
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.1e-30 Score=234.91 Aligned_cols=278 Identities=21% Similarity=0.275 Sum_probs=229.8
Q ss_pred CCCCcEEEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 2 FPRLSFLNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
+++|++|++++|.++++ ..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLG 140 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECT
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECC
Confidence 68999999999998875 48899999999999999875 57799999999999999998765 4589999999999
Q ss_pred cCC-CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686 79 NSS-LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 79 ~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 157 (384)
+|. +...+.+..+++|++|++++|.+.+..+ +..+ ++|+.|++++|.+.+... +..+++|+.|++++|.+.+.
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l-~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANL-TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh--hccC-CCCCEEEccCCccccccc---ccCCCccceeecccCCCCCC
Confidence 994 5555778999999999999999886544 6777 999999999999886544 35789999999999998866
Q ss_pred HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686 158 AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 237 (384)
Q Consensus 158 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 237 (384)
.+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++. ..+..+++|++|++++|.
T Consensus 215 ~~--~~~~~~L~~L~l~~n~l~~~~--------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 215 TP--VANMTRLNSLKIGNNKITDLS--------------PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCG--------------GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred ch--hhcCCcCCEEEccCCccCCCc--------------chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 44 778899999999999988653 356788999999999988874 457788999999999999
Q ss_pred CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCcc
Q 016686 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQI 317 (384)
Q Consensus 238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n 317 (384)
+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++..... ...++.++ .+++++|
T Consensus 277 l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~-------~L~l~~N 343 (347)
T 4fmz_A 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMD-------SADFANQ 343 (347)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCS-------EESSSCC
T ss_pred cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccc-------eeehhhh
Confidence 8875 357888999999999999998888888889999999999999854322 44566666 6778887
Q ss_pred ccC
Q 016686 318 GSN 320 (384)
Q Consensus 318 ~~~ 320 (384)
.++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.9e-30 Score=237.01 Aligned_cols=265 Identities=19% Similarity=0.213 Sum_probs=219.5
Q ss_pred CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686 4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
+++.++++++.++.+|. .+++++|++++|.+++++. .+..+++|++|++++|.++++.+. .|.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECCCC
Confidence 68899999999988873 4689999999999998776 455899999999999999987544 3668999999999999
Q ss_pred CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCc--hHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
.+..++.-. .++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.. ..+.. ++.+++|++|++++|.++..
T Consensus 111 ~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l- 186 (330)
T 1xku_A 111 QLKELPEKM-PKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI- 186 (330)
T ss_dssp CCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC-
T ss_pred cCCccChhh-cccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC-
Confidence 988774222 2789999999999998888888888 999999999999864 23333 35689999999999988753
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
+..+ .++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 187 ~~~~--~~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 187 PQGL--PPSLTELHLDGNKITKVDAA------------SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CSSC--CTTCSEEECTTSCCCEECTG------------GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred Cccc--cccCCEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 2222 37899999999999887766 688899999999999999988777888999999999999999
Q ss_pred ChhhHHhccCCCCCCEEEccCCccCccccccccCC------CCCCEEEccCCcCCC
Q 016686 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP------RSLKLLDLHGGWLLT 288 (384)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~n~~~~ 288 (384)
+. +|..+..+++|++|++++|++++..+..|... +.++.+++++|++..
T Consensus 253 ~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 253 VK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 85 66778889999999999999998777766543 688899999998743
No 31
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.8e-32 Score=260.63 Aligned_cols=343 Identities=15% Similarity=0.172 Sum_probs=205.2
Q ss_pred CCCCcEEEccCCCCCC------CCCCCCCcEEEccCCCch-----hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCC
Q 016686 2 FPRLSFLNLAWTGVTK------LPNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYIETS 70 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~------l~~~~~L~~L~ls~n~i~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 70 (384)
.++|++||+++|.++. ++.+++|++|++++|.++ .++..+..+++|++|++++|.++.......+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3567788888777764 346777888888888776 34555567777888888887776533221122344
Q ss_pred ----CccEEEeecCCCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhc----cCCccEEEccCCCCCchHHH-
Q 016686 71 ----LLSFLDVSNSSLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACV----GANLRNLNLSNTRFSSAGVG- 135 (384)
Q Consensus 71 ----~L~~L~ls~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~n~l~~~~~~- 135 (384)
+|++|++++|.+... ..+..+++|++|++++|.+.+..+..+... .++|++|++++|.++.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 588888888877642 456677778888888877766555544431 14677888877777664322
Q ss_pred --HHHhCCCCCCEEeccCCCCChHHHHhhh-----CCCCccEEEeeCCcCCcch----hhcccchhhhhhHHhhcCCCCC
Q 016686 136 --ILAGHLPNLEILSLSGTQIDDYAISYMS-----MMPSLKFIDISNTDIKGFI----QQVGAETDLVLSLTALQNLNHL 204 (384)
Q Consensus 136 --~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~~~~~~~~~~L 204 (384)
..++.+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +. .+..+++|
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~~~~L 229 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG------------IVASKASL 229 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH------------HHHHCTTC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH------------HHHhCCCc
Confidence 2224467778888877777665554443 2557777777777776532 22 35566777
Q ss_pred CEEEccCCCCCcccccc-----cccCCCCcEEEcCCCCCChh----hHHhccCCCCCCEEEccCCccCccccccccC---
Q 016686 205 ERLNLEQTQVSDATLFP-----LSTFKELIHLSLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKP--- 272 (384)
Q Consensus 205 ~~L~l~~n~l~~~~~~~-----l~~~~~L~~L~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--- 272 (384)
++|++++|.+++..... ...+++|++|++++|.+++. .+..+..+++|++|++++|.+++.++..+..
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 77777777666543221 12466777777777777664 3445555677777777777766554433322
Q ss_pred --CCCCCEEEccCCcCCCH--HHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhh-----hhhh------hhhc
Q 016686 273 --PRSLKLLDLHGGWLLTE--DAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL-----RASL------VKQK 337 (384)
Q Consensus 273 --~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~-----~~~l------~n~l 337 (384)
.++|++|++++|.+... ..+......++.++ .+++++|.+++..+..+.. .+.+ .|.+
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-------~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL-------ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC-------EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc-------EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 25677777777766322 12233334445555 5566666665443333332 1112 3333
Q ss_pred CC----CCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686 338 QD----PMPMSHSFLDQRLKYSREELLELQYSSLSL 369 (384)
Q Consensus 338 ~~----~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~ 369 (384)
++ .+|..+ ..+++|+.|++++|++++
T Consensus 383 ~~~~~~~l~~~l------~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 383 SDSSCSSLAATL------LANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CHHHHHHHHHHH------HHCCCCCEEECCSSSCCH
T ss_pred ChhhHHHHHHHH------HhCCCccEEECCCCCCCH
Confidence 31 122222 567777888888887764
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6e-32 Score=262.23 Aligned_cols=346 Identities=15% Similarity=0.158 Sum_probs=231.0
Q ss_pred cEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686 6 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 82 (384)
Q Consensus 6 ~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l 82 (384)
++||+++|+++.+|. .++|++|++++|.+++++ ..+..+++|++|++++|.++++.+. .|.++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCce
Confidence 579999999998873 369999999999999865 4667999999999999999998654 367999999999999999
Q ss_pred CCcccccCCCCccEEEeeCCCCCc-hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCC--CEEeccCCCC--ChH
Q 016686 83 SRFCFLTQMKALEHLDLSSSMIGD-DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNL--EILSLSGTQI--DDY 157 (384)
Q Consensus 83 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~i--~~~ 157 (384)
..++.. .+++|++|++++|.+++ ..|..+..+ ++|+.|++++|.+++.. ++.+++| ++|++++|.+ .+.
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccchhh----ccccccceeeEEEeeccccccccc
Confidence 988655 89999999999999986 467888998 99999999999998632 2457788 9999999998 666
Q ss_pred HHHhhhCC--------------------------CCccEEEeeCCc-------CCcchhhcc--------------cchh
Q 016686 158 AISYMSMM--------------------------PSLKFIDISNTD-------IKGFIQQVG--------------AETD 190 (384)
Q Consensus 158 ~~~~l~~~--------------------------~~L~~L~l~~n~-------l~~~~~~~~--------------~~~~ 190 (384)
.|..+..+ ++|+.+++++|. +.+.++... ...+
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 66667653 334444444432 111000000 0000
Q ss_pred hhhhHHhhcCCCCCCEEEccCCCCCccccccc------------------------------------------------
Q 016686 191 LVLSLTALQNLNHLERLNLEQTQVSDATLFPL------------------------------------------------ 222 (384)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l------------------------------------------------ 222 (384)
.+..+......++|++|++++|.+++..|..+
T Consensus 236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc
Confidence 00000000011234444444443333222222
Q ss_pred -----ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc--cccccccCCCCCCEEEccCCcCCCHHHHHHH
Q 016686 223 -----STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 295 (384)
Q Consensus 223 -----~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 295 (384)
..+++|++|++++|++++..|..++.+++|++|++++|.+++ ..+..+..+++|++|++++|.+.. ..+...
T Consensus 316 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~~~ 394 (520)
T 2z7x_B 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGD 394 (520)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGGCS
T ss_pred cccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-ccccch
Confidence 455666677777776666666666666777777777776665 233456666677777777766632 011111
Q ss_pred HHhCCCceeecccccccCCCccccCCCCCCchh-hhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccC
Q 016686 296 CKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLAR 371 (384)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~-~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 371 (384)
+..++.++ .+++++|.+++.+|..+. +++.+ .|.++ .+|+.+ ..+++|+.|++++|+++ .+
T Consensus 395 ~~~l~~L~-------~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~------~~l~~L~~L~L~~N~l~-~l 459 (520)
T 2z7x_B 395 CSWTKSLL-------SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQV------VKLEALQELNVASNQLK-SV 459 (520)
T ss_dssp CCCCTTCC-------EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGG------GGCTTCCEEECCSSCCC-CC
T ss_pred hccCccCC-------EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhh------hcCCCCCEEECCCCcCC-cc
Confidence 12233333 567777777776666653 44444 67777 678877 68999999999999998 56
Q ss_pred CCC
Q 016686 372 PDD 374 (384)
Q Consensus 372 p~~ 374 (384)
|..
T Consensus 460 ~~~ 462 (520)
T 2z7x_B 460 PDG 462 (520)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.8e-32 Score=265.76 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=143.8
Q ss_pred CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
...++.++.+++.+|. .+++++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|++++|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC
T ss_pred CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCc
Confidence 3567888888888873 4589999999999998765 456999999999999999988765 47799999999999999
Q ss_pred CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCch-HHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSA-GVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
+... ..+..+++|++|++++|.++...+..+..+ ++|++|++++|.+.+. .+..+ +.+++|++|++++|.+++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEEC
T ss_pred CCccCHhhhcCccccccccccccccccCCCcccccc-ccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceec
Confidence 9887 478999999999999999986554457778 9999999999998863 35544 67999999999999998766
Q ss_pred HHhhhCCCCc----cEEEeeCCcCCcch
Q 016686 159 ISYMSMMPSL----KFIDISNTDIKGFI 182 (384)
Q Consensus 159 ~~~l~~~~~L----~~L~l~~n~l~~~~ 182 (384)
+..+..+++| +.+++++|.+.+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred HHHccchhccchhhhhcccCCCCceecC
Confidence 6666666666 67888877766543
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=9.1e-31 Score=257.78 Aligned_cols=281 Identities=19% Similarity=0.235 Sum_probs=216.0
Q ss_pred CCCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++++.+++++|.+..++ .+++|++|++++|.+.++++ .+..+++|++|++++|.++++++. .|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEE
Confidence 467888888888887765 47888888888888887665 555888888888888888887765 36688888888
Q ss_pred EeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCC
Q 016686 76 DVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQ 153 (384)
Q Consensus 76 ~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 153 (384)
++++|.+..++ .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++.. .+.+++|+.|++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCc
Confidence 88888888773 36788888888888888887777777777 88888888888887653 2457888888888887
Q ss_pred CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEc
Q 016686 154 IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSL 233 (384)
Q Consensus 154 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L 233 (384)
+++ +...++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+..+++|++|++
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~---------------~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~L 261 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 261 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECS---------------CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ccc-----ccCCchhheeeccCCcccccccc---------------cCCCCCEEECCCCCCCCC--hhhccCCCCCEEEC
Confidence 764 34556788888888888765433 236788888888888873 56778888888888
Q ss_pred CCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccC
Q 016686 234 RNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICP 313 (384)
Q Consensus 234 ~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (384)
++|.+++..|..++.+++|+.|++++|.+++. +..+..+++|+.|++++|.+...+ .. ...++.++ .++
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~-~~~l~~L~-------~L~ 330 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE--RN-QPQFDRLE-------NLY 330 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG--GG-HHHHTTCS-------EEE
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccC--cc-cccCCCCC-------EEE
Confidence 88888888888888888888888888888873 555566788888888888874321 11 23455555 567
Q ss_pred CCccccCC
Q 016686 314 SDQIGSNG 321 (384)
Q Consensus 314 l~~n~~~~ 321 (384)
+++|.+++
T Consensus 331 L~~N~l~~ 338 (597)
T 3oja_B 331 LDHNSIVT 338 (597)
T ss_dssp CCSSCCCC
T ss_pred CCCCCCCC
Confidence 77777764
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=7.4e-32 Score=263.96 Aligned_cols=328 Identities=18% Similarity=0.132 Sum_probs=242.0
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEE
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHL 97 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L 97 (384)
.+...+++++++|.++++|..++ ++|++|++++|.++++++. .|.++++|++|++++|.++.+ ..+..+++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34566899999999999998776 8999999999999998764 467999999999999999888 468899999999
Q ss_pred EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchH-HHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCc--cEEEee
Q 016686 98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG-VGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSL--KFIDIS 174 (384)
Q Consensus 98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L--~~L~l~ 174 (384)
++++|.++. +|.. .+ ++|+.|++++|.+++.. +..+ +.+++|++|++++|.+++. .+..++++ +.|+++
T Consensus 106 ~Ls~N~l~~-lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 106 DVSHNRLQN-ISCC--PM-ASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp ECTTSCCCE-ECSC--CC-TTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred ECCCCcCCc-cCcc--cc-ccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 999999984 4544 56 99999999999998743 3444 6799999999999999864 34445555 999999
Q ss_pred CCcC--Ccchhhcccc----------------------------------------------------------------
Q 016686 175 NTDI--KGFIQQVGAE---------------------------------------------------------------- 188 (384)
Q Consensus 175 ~n~l--~~~~~~~~~~---------------------------------------------------------------- 188 (384)
+|.+ .+..+..+..
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9988 4433322111
Q ss_pred -----hhhhhhHHhhcCCCCCCEEEccCCCCCccccccc-----------------------------------------
Q 016686 189 -----TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPL----------------------------------------- 222 (384)
Q Consensus 189 -----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----------------------------------------- 222 (384)
.+.+..+......++|++|++++|.+++..|..+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence 0011111111122367777777776665444333
Q ss_pred ------------ccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc--ccccccCCCCCCEEEccCCcCCC
Q 016686 223 ------------STFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS--GLGSFKPPRSLKLLDLHGGWLLT 288 (384)
Q Consensus 223 ------------~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~ 288 (384)
..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+..
T Consensus 338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 5677888999999988887888888889999999999988873 34567888889999999988732
Q ss_pred HHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchh-hhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhc
Q 016686 289 EDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTS-LRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQY 364 (384)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~-~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~ 364 (384)
......+..++.++ .+++++|.+++.+|..+. +++.+ +|+++ .+|+.+ ..+++|+.|++++
T Consensus 418 -~~~~~~~~~l~~L~-------~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~------~~l~~L~~L~L~~ 482 (562)
T 3a79_B 418 -HAYDRTCAWAESIL-------VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDV------THLQALQELNVAS 482 (562)
T ss_dssp -CCSSCCCCCCTTCC-------EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTT------TSSCCCSEEECCS
T ss_pred -ccChhhhcCcccCC-------EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhh------cCCCCCCEEECCC
Confidence 11111122334444 678888998888887773 55555 77777 688887 6899999999999
Q ss_pred ccccccCCCC
Q 016686 365 SSLSLARPDD 374 (384)
Q Consensus 365 n~l~~~~p~~ 374 (384)
|+++ .+|..
T Consensus 483 N~l~-~l~~~ 491 (562)
T 3a79_B 483 NQLK-SVPDG 491 (562)
T ss_dssp SCCC-CCCTT
T ss_pred CCCC-CCCHH
Confidence 9998 56654
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=4.1e-30 Score=244.47 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=224.3
Q ss_pred CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEE
Q 016686 18 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 97 (384)
Q Consensus 18 l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L 97 (384)
+.++++|++|++++|.++++| .+..+++|++|++++|.+++++ +..+++|++|++++|.+.+++ +..+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 346889999999999999886 6778999999999999998874 458899999999999988875 8889999999
Q ss_pred EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686 98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177 (384)
Q Consensus 98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 177 (384)
++++|.+++. + +..+ ++|+.|++++|.+++.. .+.+++|++|++++|...+.. .+..+++|+.|++++|.
T Consensus 112 ~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred ECCCCcCCee-c--CCCC-CcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 9999998864 2 6677 89999999999988752 357889999999998543333 46788999999999999
Q ss_pred CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686 178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l 257 (384)
+++. .+..+++|+.|++++|.+++. .++.+++|++|++++|++++. | ++.+++|+.|++
T Consensus 182 l~~l---------------~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l 240 (457)
T 3bz5_A 182 ITEL---------------DVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDC 240 (457)
T ss_dssp CCCC---------------CCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred ccee---------------ccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEe
Confidence 8875 355788999999999999885 377889999999999999883 4 788899999999
Q ss_pred cCCccCccccccccCCC-------CCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch---
Q 016686 258 RDAVLTNSGLGSFKPPR-------SLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT--- 327 (384)
Q Consensus 258 ~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~--- 327 (384)
++|++++..+..+..++ +|+.|++++|.+... .+ +..++.++ .+++++|...+.+|...
T Consensus 241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~-~~---~~~l~~L~-------~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY-FQ---AEGCRKIK-------ELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE-EE---CTTCTTCC-------CCCCTTCTTCCEEECTTCCC
T ss_pred eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc-cc---ccccccCC-------EEECCCCcccceeccCCCcc
Confidence 99999886544443332 455566666654221 10 12345554 66777777666655432
Q ss_pred -----hhhhhh------hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc
Q 016686 328 -----SLRASL------VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL 369 (384)
Q Consensus 328 -----~~~~~l------~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~ 369 (384)
..++++ .|++++ ++ + .++++|+.|++++|++++
T Consensus 310 ~~L~l~~~~~L~~L~L~~N~l~~-l~--l------~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNTELTE-LD--V------SHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSC-CC--C------TTCTTCSEEECCSSCCCB
T ss_pred eEechhhcccCCEEECCCCcccc-cc--c------ccCCcCcEEECCCCCCCC
Confidence 222233 667775 32 4 678889999999999886
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-29 Score=234.55 Aligned_cols=275 Identities=19% Similarity=0.244 Sum_probs=204.8
Q ss_pred CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++|++|++++|.++. +..+++|++|++++|.++++++. +..+++|++|++++|.++.++.. .|.++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG-IFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHH-HhcCCCCCcEE
Confidence 6899999999999875 45788999999999999987655 45899999999999999988765 36689999999
Q ss_pred EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHH---------------HH
Q 016686 76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI---------------LA 138 (384)
Q Consensus 76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------~~ 138 (384)
++++|.+..+ ..+..+++|++|++++|.+++.. +..+ ++|+.+++++|.+++..... -.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l-~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGC-TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccc-cccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 9999999877 35888999999999999988643 3344 66666666655554311000 00
Q ss_pred hCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686 139 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 218 (384)
Q Consensus 139 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 218 (384)
...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus 223 ~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~- 287 (390)
T 3o6n_A 223 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL- 287 (390)
T ss_dssp CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECCSSCCCEE-
T ss_pred cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh------------HccccccCCEEECCCCcCccc-
Confidence 1235677777777777654 4677788888888888888777666 577788888888888888774
Q ss_pred ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHh
Q 016686 219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 298 (384)
Q Consensus 219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 298 (384)
+..+..+++|++|++++|++++ +|..+..+++|++|++++|.+++.. +..+++|++|++++|++.+ .....+...
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~-~~~~~~~~~ 362 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC-NSLRALFRN 362 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH-HHHHHHTTT
T ss_pred CcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc-hhHHHHHHH
Confidence 4455677888888888888876 4455677788888888888887653 4566788888888888743 444444444
Q ss_pred CCC
Q 016686 299 HPR 301 (384)
Q Consensus 299 ~~~ 301 (384)
++.
T Consensus 363 ~~~ 365 (390)
T 3o6n_A 363 VAR 365 (390)
T ss_dssp CCT
T ss_pred HHh
Confidence 443
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.7e-30 Score=235.35 Aligned_cols=263 Identities=17% Similarity=0.202 Sum_probs=210.0
Q ss_pred CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686 4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
+++.++++++.++.+|. .+++++|++++|.+.++++ .+..+++|++|++++|.++++.+. .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCC
Confidence 58899999999888773 4689999999999987754 556899999999999999887554 3668899999999999
Q ss_pred CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCc--hHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSS--AGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
.+..++.... ++|++|++++|.+....+..+..+ ++|+.|++++|.++. ..+..+ +.+ +|++|++++|.+++.
T Consensus 113 ~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~-~~l-~L~~L~l~~n~l~~l- 187 (332)
T 2ft3_A 113 HLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAF-DGL-KLNYLRISEAKLTGI- 187 (332)
T ss_dssp CCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSC-SSCCEEECCSCCCBGGGSCTTSS-CSC-CCSCCBCCSSBCSSC-
T ss_pred cCCccCcccc-ccCCEEECCCCccCccCHhHhCCC-ccCCEEECCCCccccCCCCcccc-cCC-ccCEEECcCCCCCcc-
Confidence 8887743222 789999999999886666667777 899999999998863 223332 344 899999999988753
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
|..+ .++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 188 ~~~~--~~~L~~L~l~~n~i~~~~~~------------~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 188 PKDL--PETLNELHLDHNKIQAIELE------------DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CSSS--CSSCSCCBCCSSCCCCCCTT------------SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred Cccc--cCCCCEEECCCCcCCccCHH------------HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence 2222 36889999999998887666 578889999999999999887777888899999999999998
Q ss_pred ChhhHHhccCCCCCCEEEccCCccCccccccccCC------CCCCEEEccCCcCC
Q 016686 239 TDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP------RSLKLLDLHGGWLL 287 (384)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~------~~L~~L~l~~n~~~ 287 (384)
+. +|..+..+++|++|++++|++++..+..|... +.|+.+++++|++.
T Consensus 254 ~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 254 SR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ee-cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 85 56678889999999999999988777666543 57889999999874
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5e-29 Score=227.64 Aligned_cols=261 Identities=16% Similarity=0.208 Sum_probs=222.1
Q ss_pred CCCcEEEccCCCCCCC-----CCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l-----~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
+++++|++++|.++.+ .++++|++|++++|.++++ |..+..+++|++|++++|.++.++..+ .++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~----~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM----PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC----CTTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh----cccccEEE
Confidence 5799999999998864 4789999999999999987 667779999999999999999877653 27999999
Q ss_pred eecCCCCCc--ccccCCCCccEEEeeCCCCCc--hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 77 VSNSSLSRF--CFLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 77 ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
+++|.+... ..+..+++|++|++++|.+.. ..+..+..+ ++|+.|++++|.++.. +.. ..++|++|++++|
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l-~~~---~~~~L~~L~l~~n 202 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNITTI-PQG---LPPSLTELHLDGN 202 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCCSC-CSS---CCTTCSEEECTTS
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccccC-Ccc---ccccCCEEECCCC
Confidence 999999887 358899999999999999964 456677888 9999999999998753 221 2479999999999
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 232 (384)
.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.++. .|..+..+++|++|+
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~ 269 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNG------------SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY 269 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTT------------TGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChh------------hccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEE
Confidence 99988788899999999999999999988776 58889999999999999995 567788999999999
Q ss_pred cCCCCCChhhHHhccC------CCCCCEEEccCCccCc--cccccccCCCCCCEEEccCCc
Q 016686 233 LRNASLTDVSLHQLSS------LSKLTNLSIRDAVLTN--SGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 233 L~~n~i~~~~~~~l~~------~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~ 285 (384)
+++|.+++..+..|.. .+.++.+++++|++.. ..+..|..+.+++.+++++|+
T Consensus 270 l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999877776653 3789999999999875 456678888999999999884
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.3e-31 Score=239.36 Aligned_cols=249 Identities=17% Similarity=0.209 Sum_probs=203.2
Q ss_pred CCCcEEEccCCCch---hHHhhCcCCCCccEEeccC-CCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCcc
Q 016686 22 SSLECLNLSNCTID---SILEGNENKAPLAKISLAG-TTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALE 95 (384)
Q Consensus 22 ~~L~~L~ls~n~i~---~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~ 95 (384)
.++++|++++|.+. .+|..+..+++|++|++++ |.+++..+. .|.++++|++|++++|.+.+. ..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57889999999887 4788888899999999984 777653332 356889999999999988744 4688889999
Q ss_pred EEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCC-CCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686 96 HLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLP-NLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174 (384)
Q Consensus 96 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 174 (384)
+|++++|.+.+..|..+..+ ++|++|++++|.+++..+..+ +.++ +|++|++++|.+++..|..+..++ |+.|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999998887778888888 899999999999887666665 4565 899999999988877777787776 9999999
Q ss_pred CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 254 (384)
Q Consensus 175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~ 254 (384)
+|.+.+..+. .+..+++|+.|++++|.+++..+. +..+++|++|++++|.+++..|..+..+++|++
T Consensus 206 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 206 RNMLEGDASV------------LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp SSEEEECCGG------------GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CCcccCcCCH------------HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 9988877776 678888999999999988876554 777888999999999998888888888999999
Q ss_pred EEccCCccCccccccccCCCCCCEEEccCCcCCC
Q 016686 255 LSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLT 288 (384)
Q Consensus 255 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 288 (384)
|++++|++++..|.. ..+++|+.+++++|+..+
T Consensus 273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred EECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 999999988877765 677888888888887544
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.4e-29 Score=251.21 Aligned_cols=127 Identities=23% Similarity=0.343 Sum_probs=106.3
Q ss_pred CCcEEEccCCCCCCC-----CCCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEe
Q 016686 4 RLSFLNLAWTGVTKL-----PNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDV 77 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l-----~~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 77 (384)
.+++|||++|.|+.+ .++++|++|++++|.|+++++..+ ++++|++|+|++|.++.+++. .|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-GGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-HhcCCCCCCEEEC
Confidence 689999999998854 478899999999999998877644 899999999999999988765 4778999999999
Q ss_pred ecCCCCCcc--cccCCCCccEEEeeCCCCCch-hHHHHHhccCCccEEEccCCCCCch
Q 016686 78 SNSSLSRFC--FLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLRNLNLSNTRFSSA 132 (384)
Q Consensus 78 s~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~ 132 (384)
++|+++.++ .+..+++|++|++++|.++.. .|..+..+ ++|+.|++++|++++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc-hhhhhhcccCcccccc
Confidence 999998873 578899999999999988753 45667777 8999999999887653
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-30 Score=233.67 Aligned_cols=249 Identities=20% Similarity=0.222 Sum_probs=171.3
Q ss_pred cEEEccCCCCCCCC--CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCch---hHHhhhcCCCCccEEEeec
Q 016686 6 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINE---REAFLYIETSLLSFLDVSN 79 (384)
Q Consensus 6 ~~L~l~~n~i~~l~--~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~ls~ 79 (384)
+.++.++++++.+| -.++|++|++++|.++.+|...+ .+++|++|++++|.++.. +.. +..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH--HHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc--cccccccCEEECCC
Confidence 34555666555554 22456666666666665555433 566666666666655533 122 22455666666666
Q ss_pred CCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 80 SSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 80 n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
|.+..+ ..+..+++|++|++++|.+. +......++.+++|++|++++|.+.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLK-------------------------QMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEE-------------------------SSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CccccChhhcCCCCCCCEEECCCCccc-------------------------ccccchhhhhccCCCEEECCCCcCCccc
Confidence 555444 23444555555555554443 3222111245677777777777776655
Q ss_pred HHhhhCCCCccEEEeeCCcCCc-chhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKG-FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNAS 237 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 237 (384)
+..+..+++|++|++++|.+.+ ..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred hhhcccCcCCCEEECCCCccccccchh------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 6667778888888888888876 3455 57788999999999999998878888899999999999999
Q ss_pred CChhhHHhccCCCCCCEEEccCCccCccccccccCC-CCCCEEEccCCcCCCHHHHH
Q 016686 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP-RSLKLLDLHGGWLLTEDAIL 293 (384)
Q Consensus 238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~ 293 (384)
+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|++.+.+...
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 998777788899999999999999999888888887 49999999999997655433
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.3e-29 Score=242.08 Aligned_cols=314 Identities=18% Similarity=0.177 Sum_probs=227.0
Q ss_pred CCCCcEEEccCCCCCC---------CCCCCCCcEEEccCCCchhH-HhhCc-CCC----CccEEeccCCCCCch----hH
Q 016686 2 FPRLSFLNLAWTGVTK---------LPNISSLECLNLSNCTIDSI-LEGNE-NKA----PLAKISLAGTTFINE----RE 62 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~---------l~~~~~L~~L~ls~n~i~~~-~~~~~-~~~----~L~~L~l~~n~~~~~----~~ 62 (384)
+++|++|++++|.++. +..+++|++|++++|.+... +..++ .++ +|++|++++|.++.. .+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 5789999999999883 33678999999999998742 22333 344 799999999998842 12
Q ss_pred HhhhcCCCCccEEEeecCCCCCc--c----c-ccCCCCccEEEeeCCCCCchh----HHHHHhccCCccEEEccCCCCCc
Q 016686 63 AFLYIETSLLSFLDVSNSSLSRF--C----F-LTQMKALEHLDLSSSMIGDDS----VEMVACVGANLRNLNLSNTRFSS 131 (384)
Q Consensus 63 ~~~~~~l~~L~~L~ls~n~l~~~--~----~-~~~~~~L~~L~L~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~l~~ 131 (384)
. .+..+++|++|++++|.+... . . ....++|++|++++|.+++.. +..+..+ ++|+.|++++|.++.
T Consensus 107 ~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 107 S-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINE 184 (461)
T ss_dssp H-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHH
T ss_pred H-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC-CCCCEEECcCCCcch
Confidence 2 356889999999999988653 1 1 233567999999999988744 5566677 899999999999876
Q ss_pred hHHHHHHh----CCCCCCEEeccCCCCChH----HHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH-hhcCCC
Q 016686 132 AGVGILAG----HLPNLEILSLSGTQIDDY----AISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT-ALQNLN 202 (384)
Q Consensus 132 ~~~~~~~~----~l~~L~~L~l~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~~~~ 202 (384)
..+..+.. ..++|++|++++|.+++. .+..+..+++|++|++++|.+.+.....+ .+ .+..++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--------~~~~~~~~~ 256 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL--------CPGLLHPSS 256 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH--------HHHHTSTTC
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH--------HHHHhcCCC
Confidence 65554432 356999999999998864 46667788999999999998865422100 00 223578
Q ss_pred CCCEEEccCCCCCcc----cccccccCCCCcEEEcCCCCCChhhHHhccC-----CCCCCEEEccCCccCccc----ccc
Q 016686 203 HLERLNLEQTQVSDA----TLFPLSTFKELIHLSLRNASLTDVSLHQLSS-----LSKLTNLSIRDAVLTNSG----LGS 269 (384)
Q Consensus 203 ~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~~~L~~L~l~~n~l~~~~----~~~ 269 (384)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++.. +..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 899999999988875 3555667888999999999887765555432 368999999999888764 334
Q ss_pred ccCCCCCCEEEccCCcCCCHHHHHHHHHh----CCCceeecccccccCCCccccCC----CCCCchhhhhhh
Q 016686 270 FKPPRSLKLLDLHGGWLLTEDAILQFCKM----HPRIEVWHELSVICPSDQIGSNG----PSPSRTSLRASL 333 (384)
Q Consensus 270 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~l~~n~~~~----~~p~~~~~~~~l 333 (384)
+..+++|++|++++|.+ ++.++..++.. .+.++ .+++++|.+++ .+|..+..++++
T Consensus 337 l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~-------~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRL-EDAGVRELCQGLGQPGSVLR-------VLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp HHHCSSCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCC-------EEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred HhhCCCccEEEccCCcc-ccccHHHHHHHHcCCCCceE-------EEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 55668889999998886 55556655553 33444 67788888775 566666666655
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.4e-28 Score=240.48 Aligned_cols=274 Identities=18% Similarity=0.238 Sum_probs=215.3
Q ss_pred CCCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHhhC-cCCCCccEEeccCCCCCchhHHhhhcCCCCccEE
Q 016686 2 FPRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILEGN-ENKAPLAKISLAGTTFINEREAFLYIETSLLSFL 75 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 75 (384)
+++|++|++++|.+++ +..+++|++|++++|.++++++.. ..+++|++|++++|.++.+++.. |.++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH-hccCCCCCEE
Confidence 6899999999999875 447889999999999999877665 58999999999999999887763 6789999999
Q ss_pred EeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHH---------------HH
Q 016686 76 DVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGI---------------LA 138 (384)
Q Consensus 76 ~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------~~ 138 (384)
++++|.+..+ ..+..+++|++|++++|.+++.. +..+ ++|+.|++++|.+++..... ..
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l-~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGC-TTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhh-hhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 9999999887 36889999999999999998653 3344 66666666666554321000 00
Q ss_pred hCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686 139 GHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 218 (384)
Q Consensus 139 ~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 218 (384)
...++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus 229 ~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l- 293 (597)
T 3oja_B 229 PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNNRLVAL- 293 (597)
T ss_dssp SCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTSCCCEE-
T ss_pred ccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCCCCCCC-
Confidence 1234688888888887754 5678889999999999999888777 688899999999999999884
Q ss_pred ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHh
Q 016686 219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKM 298 (384)
Q Consensus 219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 298 (384)
+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+ .....+...
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~-~~~~~~~~~ 368 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC-NSLRALFRN 368 (597)
T ss_dssp ECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH-HHHHHHTTT
T ss_pred CcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC-hhHHHHHHH
Confidence 5566778999999999999986 5666788899999999999998753 5667899999999999844 344444444
Q ss_pred CC
Q 016686 299 HP 300 (384)
Q Consensus 299 ~~ 300 (384)
++
T Consensus 369 ~~ 370 (597)
T 3oja_B 369 VA 370 (597)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=229.71 Aligned_cols=275 Identities=19% Similarity=0.217 Sum_probs=225.9
Q ss_pred CCCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEee
Q 016686 2 FPRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVS 78 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls 78 (384)
|+.....+.+++.++.+|. .++|++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|+++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC
T ss_pred CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECC
Confidence 4455668889999998873 4689999999999998877 556999999999999999987654 36689999999999
Q ss_pred cCCCCCcc--cccCCCCccEEEeeCCCCCchhH-HHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccCCCC
Q 016686 79 NSSLSRFC--FLTQMKALEHLDLSSSMIGDDSV-EMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSGTQI 154 (384)
Q Consensus 79 ~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~i 154 (384)
+|.++.++ .+..+++|++|++++|.+..... ..+..+ ++|+.|++++|. +....+..+ +.+++|++|++++|.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASDL 186 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETTC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCCc
Confidence 99998883 37889999999999999985333 356777 999999999995 655444444 6789999999999999
Q ss_pred ChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc---cCCCCcEE
Q 016686 155 DDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS---TFKELIHL 231 (384)
Q Consensus 155 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L 231 (384)
++..+..+..+++|++|++++|.+...... .+..+++|+.|++++|.+++..+..+. ..+.++.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEI------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHH------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred CccCHHHHhccccCCeecCCCCccccchhh------------hhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 988788899999999999999998765544 466689999999999999886554443 46778999
Q ss_pred EcCCCCCChh----hHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHH
Q 016686 232 SLRNASLTDV----SLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDA 291 (384)
Q Consensus 232 ~L~~n~i~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 291 (384)
++.++.+++. +|..+..+++|++|++++|+++......+..+++|++|++++|++.+.+.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999998873 67788999999999999999997555556889999999999999977653
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.4e-28 Score=230.30 Aligned_cols=308 Identities=17% Similarity=0.177 Sum_probs=139.9
Q ss_pred CCCcEEEccCCCCCCCCC-CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 3 PRLSFLNLAWTGVTKLPN-ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~~-~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
++|++|++++|.+++++. +++|++|++++|.+++++.. .++|++|++++|.+++++ . |.++++|++|++++|+
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~--~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-E--LQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-C--CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-c--cCCCCCCCEEECCCCc
Confidence 356666666666665542 34566666666666554321 146666666666666654 2 4466666666666666
Q ss_pred CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686 82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161 (384)
Q Consensus 82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 161 (384)
+..++.. .++|++|++++|.+++ .| .+..+ ++|+.|++++|.+++. + ...++|++|++++|.++. .| .
T Consensus 165 l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l-~~L~~L~l~~N~l~~l-~----~~~~~L~~L~l~~n~l~~-lp-~ 232 (454)
T 1jl5_A 165 LKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNL-PFLTAIYADNNSLKKL-P----DLPLSLESIVAGNNILEE-LP-E 232 (454)
T ss_dssp CSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTC-TTCCEEECCSSCCSSC-C----CCCTTCCEEECCSSCCSS-CC-C
T ss_pred CcccCCC--cccccEEECcCCcCCc-Cc-cccCC-CCCCEEECCCCcCCcC-C----CCcCcccEEECcCCcCCc-cc-c
Confidence 6655322 2466666666666664 23 35555 6666666666666541 1 112456666666666552 22 3
Q ss_pred hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChh
Q 016686 162 MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDV 241 (384)
Q Consensus 162 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~ 241 (384)
+..+++|++|++++|.+.+.. . ..++|+.|++++|.+++. |.. +++|++|++++|.+++.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~-~---------------~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLP-D---------------LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCC-S---------------CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE
T ss_pred cCCCCCCCEEECCCCcCCccc-c---------------cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc
Confidence 556666666666666665431 1 123455555555554442 111 23444444444444431
Q ss_pred h--HH-------------hccCC-CCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceee
Q 016686 242 S--LH-------------QLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 305 (384)
Q Consensus 242 ~--~~-------------~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~ 305 (384)
. |. .+..+ ++|++|++++|++++ .+.. +++|++|++++|.+...+ . .++.++
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp---~---~l~~L~-- 360 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP---E---LPQNLK-- 360 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC---C---CCTTCC--
T ss_pred cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc---c---hhhhcc--
Confidence 1 00 01122 355555555555554 2221 355666666666553211 0 122222
Q ss_pred cccccccCCCccccCC--CCCCchhhhhhhhhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc--cCCCCCc
Q 016686 306 HELSVICPSDQIGSNG--PSPSRTSLRASLVKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSS 376 (384)
Q Consensus 306 ~~~~~~~~l~~n~~~~--~~p~~~~~~~~l~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~ 376 (384)
.+++++|.+++ .+|.+++.+. .|...|.+|.. .++|+.|++++|++++ .+|..-.
T Consensus 361 -----~L~L~~N~l~~l~~ip~~l~~L~--~n~~~~~i~~~---------~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 361 -----QLHVEYNPLREFPDIPESVEDLR--MNSHLAEVPEL---------PQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp -----EEECCSSCCSSCCCCCTTCCEEE--CCC------------------------------------------
T ss_pred -----EEECCCCCCCcCCCChHHHHhhh--hcccccccccc---------cCcCCEEECCCCcCCccccchhhHh
Confidence 45555666655 5555554432 12233333331 3688999999999987 7775543
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=3.2e-28 Score=231.27 Aligned_cols=302 Identities=19% Similarity=0.208 Sum_probs=240.7
Q ss_pred CCcEEEccCCCCCCCCCC-CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686 4 RLSFLNLAWTGVTKLPNI-SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 82 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~~-~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l 82 (384)
++++|++++|.++++|.. ++|++|++++|.++++|.. .++|++|++++|.+++++.. .++|++|++++|.+
T Consensus 72 ~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQL 143 (454)
T ss_dssp TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCC
T ss_pred CCCEEEecCCccccCCCCcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCC
Confidence 579999999999998754 5899999999999988753 48999999999999876531 27999999999999
Q ss_pred CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686 83 SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 162 (384)
Q Consensus 83 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l 162 (384)
.+++.+..+++|++|++++|.+++ +|. .. ++|+.|++++|.+++. + . ++.+++|++|++++|.+++. +.
T Consensus 144 ~~lp~~~~l~~L~~L~l~~N~l~~-lp~---~~-~~L~~L~L~~n~l~~l-~-~-~~~l~~L~~L~l~~N~l~~l-~~-- 212 (454)
T 1jl5_A 144 EKLPELQNSSFLKIIDVDNNSLKK-LPD---LP-PSLEFIAAGNNQLEEL-P-E-LQNLPFLTAIYADNNSLKKL-PD-- 212 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSSC-C-C-CTTCTTCCEEECCSSCCSSC-CC--
T ss_pred CCCcccCCCCCCCEEECCCCcCcc-cCC---Cc-ccccEEECcCCcCCcC-c-c-ccCCCCCCEEECCCCcCCcC-CC--
Confidence 988889999999999999999985 332 23 6899999999999874 3 3 36799999999999998753 21
Q ss_pred hCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh
Q 016686 163 SMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 242 (384)
Q Consensus 163 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~ 242 (384)
..++|++|++++|.+... +. +..+++|+.|++++|.+++. |. .+++|++|++++|++++.
T Consensus 213 -~~~~L~~L~l~~n~l~~l-p~-------------~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l- 272 (454)
T 1jl5_A 213 -LPLSLESIVAGNNILEEL-PE-------------LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL- 272 (454)
T ss_dssp -CCTTCCEEECCSSCCSSC-CC-------------CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-
T ss_pred -CcCcccEEECcCCcCCcc-cc-------------cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-
Confidence 236899999999998843 33 67889999999999999874 33 247899999999999873
Q ss_pred HHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhC-CCceeecccccccCCCccccCC
Q 016686 243 LHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH-PRIEVWHELSVICPSDQIGSNG 321 (384)
Q Consensus 243 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~n~~~~ 321 (384)
|. ..++|++|++++|.+++.. . ..++|+.|++++|.+... ..+ +.++ .+++++|++++
T Consensus 273 ~~---~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-------~~~~~~L~-------~L~Ls~N~l~~ 331 (454)
T 1jl5_A 273 PE---LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-------CDLPPSLE-------ELNVSNNKLIE 331 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-------CCCCTTCC-------EEECCSSCCSC
T ss_pred Cc---ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-------cCCcCcCC-------EEECCCCcccc
Confidence 32 2489999999999998732 1 126899999999998431 112 2333 67888999986
Q ss_pred CCCCchhhhhhh---hhhcCCCCCCchhhHHhhhhhcHHHHHhhhcccccc--cCCCCCc
Q 016686 322 PSPSRTSLRASL---VKQKQDPMPMSHSFLDQRLKYSREELLELQYSSLSL--ARPDDSS 376 (384)
Q Consensus 322 ~~p~~~~~~~~l---~n~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~ 376 (384)
+|..+.+++.+ .|+++ .+|. . +++|+.|++++|++++ .+|....
T Consensus 332 -lp~~~~~L~~L~L~~N~l~-~lp~-~--------l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 332 -LPALPPRLERLIASFNHLA-EVPE-L--------PQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCS-CCCC-C--------CTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred -ccccCCcCCEEECCCCccc-cccc-h--------hhhccEEECCCCCCCcCCCChHHHH
Confidence 77776666666 67777 4676 3 5788999999999998 7776654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1e-28 Score=225.77 Aligned_cols=260 Identities=14% Similarity=0.202 Sum_probs=219.3
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhH-HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSI-LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
++|++|++++|.++. +..+++|++|++++|.++++ |..+..+++|++|++++|.++.++..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEE
Confidence 589999999999875 45789999999999999987 6667799999999999999998776532 8999999
Q ss_pred eecCCCCCcc--cccCCCCccEEEeeCCCCCc--hhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 77 VSNSSLSRFC--FLTQMKALEHLDLSSSMIGD--DSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 77 ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
+++|.+..++ .+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+++. +.. ..++|++|++++|
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l-~~~---~~~~L~~L~l~~n 203 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTGI-PKD---LPETLNELHLDHN 203 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSC-CSS---SCSSCSCCBCCSS
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCcc-Ccc---ccCCCCEEECCCC
Confidence 9999998883 58899999999999999963 344444443 899999999998863 222 2379999999999
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEE
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLS 232 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 232 (384)
.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.++. +|..+..+++|++|+
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG------------SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVY 270 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT------------GGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChh------------HhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEE
Confidence 99988778889999999999999999988776 68889999999999999995 667789999999999
Q ss_pred cCCCCCChhhHHhccC------CCCCCEEEccCCccC--ccccccccCCCCCCEEEccCCc
Q 016686 233 LRNASLTDVSLHQLSS------LSKLTNLSIRDAVLT--NSGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 233 L~~n~i~~~~~~~l~~------~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~ 285 (384)
+++|.+++..+..+.. .+.|+.+++++|++. +..+..+..+++|+.+++++|+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999887777754 467999999999987 5567788889999999999885
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.5e-29 Score=250.94 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=129.7
Q ss_pred cEEEccCCCCCCCC-CCC-CCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC
Q 016686 6 SFLNLAWTGVTKLP-NIS-SLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL 82 (384)
Q Consensus 6 ~~L~l~~n~i~~l~-~~~-~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l 82 (384)
.+.+-++.+++.+| .+| ++++|+|++|.|+++++. +..+++|++|++++|.++.+++. .|.++++|++|+|++|++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcC
Confidence 34566777788887 454 899999999999998765 55999999999999999998776 477999999999999999
Q ss_pred CCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686 83 SRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 160 (384)
Q Consensus 83 ~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 160 (384)
+.+ ..|.++++|++|++++|.+++..+..+..+ ++|+.|++++|.+........++.+++|++|++++|.+++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 888 368999999999999999997666668888 99999999999987644333446799999999999998765444
Q ss_pred hh
Q 016686 161 YM 162 (384)
Q Consensus 161 ~l 162 (384)
.+
T Consensus 192 ~l 193 (635)
T 4g8a_A 192 DL 193 (635)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=9.7e-30 Score=230.44 Aligned_cols=244 Identities=15% Similarity=0.158 Sum_probs=213.9
Q ss_pred CCCcEEEccCCCCCC---C----CCCCCCcEEEccC-CCch-hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCcc
Q 016686 3 PRLSFLNLAWTGVTK---L----PNISSLECLNLSN-CTID-SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 73 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~---l----~~~~~L~~L~ls~-n~i~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 73 (384)
.++++|++++|.+++ + ..+++|++|++++ |.+. .+|..+..+++|++|++++|.+++..+. .|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCCC
Confidence 578999999999985 3 4789999999995 8887 5788888999999999999999854333 356999999
Q ss_pred EEEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccC-CccEEEccCCCCCchHHHHHHhCCCCCCEEecc
Q 016686 74 FLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGA-NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLS 150 (384)
Q Consensus 74 ~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 150 (384)
+|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+ + +|+.|++++|.+++..+..+ +.++ |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-CTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-hhcCcEEECcCCeeeccCChHH-hCCc-ccEEECc
Confidence 999999998754 578899999999999999998888888888 6 99999999999987777665 4565 9999999
Q ss_pred CCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcE
Q 016686 151 GTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIH 230 (384)
Q Consensus 151 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 230 (384)
+|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..|..+..+++|++
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 9999888888899999999999999999877654 677899999999999999889999999999999
Q ss_pred EEcCCCCCChhhHHhccCCCCCCEEEccCCc-cCc
Q 016686 231 LSLRNASLTDVSLHQLSSLSKLTNLSIRDAV-LTN 264 (384)
Q Consensus 231 L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~-l~~ 264 (384)
|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 273 L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred EECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999999999887765 788999999999998 544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.9e-28 Score=220.19 Aligned_cols=223 Identities=17% Similarity=0.280 Sum_probs=148.6
Q ss_pred CCCcEEEccCCCCCCCC-----CCCCCcEEEccCCCchhH---HhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccE
Q 016686 3 PRLSFLNLAWTGVTKLP-----NISSLECLNLSNCTIDSI---LEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSF 74 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~-----~~~~L~~L~ls~n~i~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 74 (384)
++|++|++++|.++.++ .+++|++|++++|.++.+ +..+..+++|++|++++|.++.++.. +..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~--~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE--EETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh--cCCCCCCCE
Confidence 58999999999988654 788999999999999854 55666899999999999999987764 558999999
Q ss_pred EEeecCCCCCcc---cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccC
Q 016686 75 LDVSNSSLSRFC---FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG 151 (384)
Q Consensus 75 L~ls~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 151 (384)
|++++|.+...+ .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+.
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~------------------- 165 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQEN------------------- 165 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEGGG-------------------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccccc-------------------
Confidence 999999887763 57778888888888888776555555555 6666666666665431
Q ss_pred CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEE
Q 016686 152 TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHL 231 (384)
Q Consensus 152 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 231 (384)
..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 166 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 166 -----FLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp -----EECSCCTTCTTCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred -----cchhHHhhCcCCCEEECCCCCcCCcCHH------------HhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 1222333444444444444444444333 34445555555555555555444444455555555
Q ss_pred EcCCCCCChhhHHhccCCC-CCCEEEccCCccCc
Q 016686 232 SLRNASLTDVSLHQLSSLS-KLTNLSIRDAVLTN 264 (384)
Q Consensus 232 ~L~~n~i~~~~~~~l~~~~-~L~~L~l~~n~l~~ 264 (384)
++++|.+++..+..+..++ +|++|++++|+++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555555555554555543 55555555555543
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.4e-28 Score=228.53 Aligned_cols=253 Identities=15% Similarity=0.197 Sum_probs=208.1
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS 100 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~ 100 (384)
....++.++..++.+|..+. ++++.|++++|.++.+++. .|.++++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45678888888888887665 6788888888888887654 467888888888888888776 467788888888888
Q ss_pred CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIK 179 (384)
Q Consensus 101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~ 179 (384)
+|.++...+..+..+ ++|+.|++++|.+.......+ ..+++|++|++++| .+....+..|..+++|++|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAF-NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp SSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHh-hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 888886655567777 888899998888875544443 56889999999874 455444556788999999999999887
Q ss_pred cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686 180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~ 259 (384)
.. + .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 199 ~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 199 EI-P-------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp SC-C-------------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cc-c-------------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 54 2 367789999999999999998888899999999999999999998888999999999999999
Q ss_pred CccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686 260 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ 294 (384)
Q Consensus 260 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 294 (384)
|++++..+..+..+++|+.|++++|++.+++....
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 99998888888889999999999999877665443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=9.1e-28 Score=228.70 Aligned_cols=252 Identities=17% Similarity=0.216 Sum_probs=209.5
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS 100 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~ 100 (384)
....++.++..++.+|..+. +++++|++++|.++.+.+. .|.++++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35678888888888887665 6888899999888887654 466888999999999888877 467888889999999
Q ss_pred CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDYAISYMSMMPSLKFIDISNTDIK 179 (384)
Q Consensus 101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~l~~~~~L~~L~l~~n~l~ 179 (384)
+|.++...+..+..+ ++|+.|++++|.+.......+ ..+++|++|++++| .+....+..+..+++|+.|++++|.+.
T Consensus 132 ~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAF-NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp SSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTT-TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHH-hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 998886666667777 889999999998875544333 67889999999874 455444556888999999999999988
Q ss_pred cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686 180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~ 259 (384)
+. + .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 210 ~~-~-------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 210 DM-P-------------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp SC-C-------------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cc-c-------------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 65 2 367889999999999999998888999999999999999999998888999999999999999
Q ss_pred CccCccccccccCCCCCCEEEccCCcCCCHHHHH
Q 016686 260 AVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 293 (384)
Q Consensus 260 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 293 (384)
|++++..+..+..+++|+.|++++|++.+++...
T Consensus 276 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999888888888999999999999987766544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=218.00 Aligned_cols=252 Identities=17% Similarity=0.223 Sum_probs=210.6
Q ss_pred CCCcEEEccCCCCCC-----CCCCCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEE
Q 016686 3 PRLSFLNLAWTGVTK-----LPNISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLD 76 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~-----l~~~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 76 (384)
++|++|++++|.++. +..+++|++|++++|.+++++. .+..+++|++|++++|.++++++. .|.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH-HHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh-HhCCCccCCEEE
Confidence 589999999999885 4578999999999999998754 466999999999999999998775 366899999999
Q ss_pred eecCCCCCcc---cccCCCCccEEEeeCC-CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 77 VSNSSLSRFC---FLTQMKALEHLDLSSS-MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 77 ls~n~l~~~~---~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
+++|.+..++ .+..+++|++|++++| .+....+..+..+ ++|+.|++++|.+++..+..+ +.+++|++|++++|
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMK 208 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCccCHHHH-hccccCCeecCCCC
Confidence 9999998874 4888999999999999 4776666778888 999999999999987766655 67899999999999
Q ss_pred CCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc----cccccccCCCC
Q 016686 153 QIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA----TLFPLSTFKEL 228 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L 228 (384)
.++......+..+++|+.|++++|.+++..+.. +........++.++++++.+++. .|..+..+++|
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSE---------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccc---------cccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 998666666667899999999999998764431 11234567899999999998874 56677899999
Q ss_pred cEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686 229 IHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 266 (384)
Q Consensus 229 ~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 266 (384)
++|++++|++++.....+..+++|++|++++|++.+..
T Consensus 280 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 99999999999765555789999999999999988754
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.1e-27 Score=221.37 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=212.8
Q ss_pred CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHh-hCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686 4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILE-GNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
..+.++.++..++.+|. .++++.|++++|.|+.++. .+..+++|++|++++|.++.+++. .|.++++|++|++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChh-hccCCccCCEEECCCC
Confidence 35678888888988873 4689999999999998764 455999999999999999988765 4779999999999999
Q ss_pred CCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH
Q 016686 81 SLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA 158 (384)
Q Consensus 81 ~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 158 (384)
.++.++ .+..+++|++|++++|.+....+..+..+ ++|+.|++++|...+..+...++.+++|++|++++|.++..
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 998883 58899999999999999997767778888 99999999996533333333346789999999999998854
Q ss_pred HHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCC
Q 016686 159 ISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 159 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i 238 (384)
..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++
T Consensus 201 -~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 201 -PNLTPLIKLDELDLSGNHLSAIRPG------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp -CCCTTCSSCCEEECTTSCCCEECTT------------TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred -cccCCCcccCEEECCCCccCccChh------------hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 2577899999999999999988777 689999999999999999999888999999999999999999
Q ss_pred ChhhHHhccCCCCCCEEEccCCccCc
Q 016686 239 TDVSLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
++..+..+..+++|+.|++++|++.-
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhHhccccCCCEEEcCCCCccC
Confidence 99888889999999999999998753
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2e-27 Score=212.44 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=152.3
Q ss_pred cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCC
Q 016686 25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 102 (384)
Q Consensus 25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n 102 (384)
++++.+++.++.+|..+ .++|++|++++|.++.+++. .|..+++|++|++++|.+..+ ..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666666555443 24566666666666655433 244555566666655555544 23444555555555555
Q ss_pred C-CCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 103 M-IGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 103 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
. +....+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 91 ~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 91 AQLRSVDPATF--------------------------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp TTCCCCCTTTT--------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccccCHHHh--------------------------cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 4 332222223 3456666666666666655555566677777777777777766
Q ss_pred hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 261 (384)
.+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 145 ~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 145 PDD------------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CHh------------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 555 56777888888888888887666667788888888888888888777788888888888888888
Q ss_pred cCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686 262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
+++..+..+..+++|++|++++|++.+++....+.
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~ 247 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW 247 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCCcHHHH
Confidence 88876677788888888888888886655544333
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.4e-27 Score=221.70 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=211.7
Q ss_pred CcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 5 LSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 5 L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
.+.++.++.+++.+|. .+++++|++++|.|+.++ ..+..+++|++|++++|.++.+++. .|.++++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh-hccCcccCCEEECCCCc
Confidence 4678888888888873 468999999999999874 4556999999999999999988755 47799999999999999
Q ss_pred CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686 82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
++.+ ..+..+++|++|++++|.+....+..+..+ ++|+.|++++|...+..+...++.+++|++|++++|.+++.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence 9887 358889999999999999997666678888 99999999996533333333346789999999999999865
Q ss_pred HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 3577899999999999999988777 7899999999999999999988889999999999999999999
Q ss_pred hhhHHhccCCCCCCEEEccCCccCc
Q 016686 240 DVSLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 240 ~~~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
+..+..+..+++|+.|++++|++..
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccChHHhccccCCCEEEccCCCcCC
Confidence 9888888999999999999998754
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-27 Score=216.27 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=153.3
Q ss_pred CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc-ccccCCCCccEEEee
Q 016686 22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF-CFLTQMKALEHLDLS 100 (384)
Q Consensus 22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~ 100 (384)
+++++|++++|.++.+|..++.+++|++|++++|.++.++.. +.++++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC--GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH--HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 445555555555555555555555555555555555544432 23455555555555555444 244455555555555
Q ss_pred CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCc
Q 016686 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKG 180 (384)
Q Consensus 101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~ 180 (384)
+|.+.+..|..+. ...+.+ . ++.+++|++|++++|.++ ..|..+..+++|++|++++|.+.+
T Consensus 159 ~n~~~~~~p~~~~-------~~~~~~---------~-~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 159 ACPELTELPEPLA-------STDASG---------E-HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EETTCCCCCSCSE-------EEC-CC---------C-EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCccccChhHh-------hccchh---------h-hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 5444433332111 111100 0 134778888888888877 555667788888888888888876
Q ss_pred chhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCC
Q 016686 181 FIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDA 260 (384)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n 260 (384)
..+ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 221 l~~-------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 221 LGP-------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCG-------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred Cch-------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 433 3677888888888888888877888888888888888888888778888888888888888888
Q ss_pred ccCccccccccCCCCCCEEEccCCcCC
Q 016686 261 VLTNSGLGSFKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 261 ~l~~~~~~~~~~~~~L~~L~l~~n~~~ 287 (384)
.+.+..|..+..+++++.+++..+.+.
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888877653
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-26 Score=210.07 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=208.3
Q ss_pred CCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeC
Q 016686 23 SLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSS 101 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~ 101 (384)
.++..+++.+.+...+..++ .+++|++|++++|.++.+++. .|.++++|++|++++|.+.+...+..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence 45667788888877666665 778999999999999987654 3679999999999999998776689999999999999
Q ss_pred CCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc
Q 016686 102 SMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 102 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
|.+++.. .. ++|+.|++++|.+++..+ ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 90 n~l~~l~-----~~-~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 90 NYVQELL-----VG-PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SEEEEEE-----EC-TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred Ccccccc-----CC-CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 9988543 33 899999999999986543 3478999999999999987777888899999999999999987
Q ss_pred hhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCc
Q 016686 182 IQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 261 (384)
.+.. ....+++|++|++++|.+++.. ....+++|++|++++|.+++..+ .+..+++|++|++++|.
T Consensus 160 ~~~~-----------~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 160 NFAE-----------LAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EGGG-----------GGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSC
T ss_pred cHHH-----------HhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCc
Confidence 6652 2347899999999999999863 33458999999999999998654 48889999999999999
Q ss_pred cCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCce
Q 016686 262 LTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIE 303 (384)
Q Consensus 262 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~ 303 (384)
+++ .+..+..+++|+.|++++|++.++ .+..+...++.++
T Consensus 226 l~~-l~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~~~L~ 265 (317)
T 3o53_A 226 LVL-IEKALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRVQ 265 (317)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCCBHH-HHHHHHHTCHHHH
T ss_pred ccc-hhhHhhcCCCCCEEEccCCCccCc-CHHHHHhccccce
Confidence 996 566788889999999999999544 3444445555444
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.8e-26 Score=204.96 Aligned_cols=219 Identities=18% Similarity=0.225 Sum_probs=152.4
Q ss_pred cEEEccCCCCCCCC--CCCCCcEEEccCCCchhHHhh-CcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC-
Q 016686 6 SFLNLAWTGVTKLP--NISSLECLNLSNCTIDSILEG-NENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS- 81 (384)
Q Consensus 6 ~~L~l~~n~i~~l~--~~~~L~~L~ls~n~i~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~- 81 (384)
++++.++++++.+| ..++|++|++++|.++.++.. +..+++|++|++++|.++++.+. .|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCC
Confidence 67899999999887 456999999999999988754 55999999999999999987554 46789999999999997
Q ss_pred CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686 82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
+..+ ..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~------------------------- 146 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPD------------------------- 146 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCT-------------------------
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-cCCCEEECCCCcccccCH-------------------------
Confidence 7776 468889999999999999886656556666 667777776666654332
Q ss_pred HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 160 SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 160 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPER------------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hHhccCCCccEEECCCCcccccCHH------------HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 2233444444445554444443333 3445555555555555555555555555556666666666665
Q ss_pred hhhHHhccCCCCCCEEEccCCccC
Q 016686 240 DVSLHQLSSLSKLTNLSIRDAVLT 263 (384)
Q Consensus 240 ~~~~~~l~~~~~L~~L~l~~n~l~ 263 (384)
+..+..+..+++|+.|++++|++.
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCCHHHcccCcccCEEeccCCCcc
Confidence 555555556666666666666554
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=211.28 Aligned_cols=214 Identities=17% Similarity=0.158 Sum_probs=149.8
Q ss_pred CCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEe
Q 016686 70 SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILS 148 (384)
Q Consensus 70 ~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 148 (384)
+.++.|++++|.+..+ +.+..+++|++|++++|.+. .+|..+..+ ++|+.|++++|.++ ..+..+ +.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASI-ASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGG-GGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHH-hcCcCCCEEE
Confidence 4455555555555444 23444555555555555554 344444444 55555555555554 223222 3455555555
Q ss_pred ccCCCCChHHHHh---------hhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686 149 LSGTQIDDYAISY---------MSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 219 (384)
Q Consensus 149 l~~n~i~~~~~~~---------l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 219 (384)
+++|.+.+..|.. +..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++ .+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~------------~l~~l~~L~~L~L~~N~l~~-l~ 222 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA------------SIANLQNLKSLKIRNSPLSA-LG 222 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCG------------GGGGCTTCCEEEEESSCCCC-CC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchH------------hhcCCCCCCEEEccCCCCCc-Cc
Confidence 5554444333333 345899999999999998 4455 58889999999999999998 45
Q ss_pred cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhC
Q 016686 220 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMH 299 (384)
Q Consensus 220 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 299 (384)
..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.. . +......+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~-iP~~l~~L 300 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS-R-LPSLIAQL 300 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC-C-CCGGGGGS
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh-h-ccHHHhhc
Confidence 578999999999999999999899999999999999999999999899899999999999999998744 2 22233455
Q ss_pred CCce
Q 016686 300 PRIE 303 (384)
Q Consensus 300 ~~l~ 303 (384)
+.+.
T Consensus 301 ~~L~ 304 (328)
T 4fcg_A 301 PANC 304 (328)
T ss_dssp CTTC
T ss_pred cCce
Confidence 6555
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.3e-27 Score=212.90 Aligned_cols=238 Identities=16% Similarity=0.147 Sum_probs=193.0
Q ss_pred CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEE
Q 016686 20 NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 98 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~ 98 (384)
.+++|++|++++|.+++++ ..+..+++|++|++++|.+++.++ +..+++|++|++++|.++.++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence 5678999999999998765 456689999999999999987654 558899999999999877654 347899999
Q ss_pred eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCc
Q 016686 99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTD 177 (384)
Q Consensus 99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~ 177 (384)
+++|.+++..+. .+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 106 l~~n~l~~~~~~---~~-~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 106 AANNNISRVSCS---RG-QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CCSSCCSEEEEC---CC-SSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCccCCcCcc---cc-CCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 999999865443 24 889999999999987655444 5688999999999999877666654 68899999999999
Q ss_pred CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686 178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l 257 (384)
+++... ...+++|+.|++++|.+++.. ..+..+++|++|++++|.+++ +|..+..+++|+.|++
T Consensus 181 l~~~~~--------------~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 181 IYDVKG--------------QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (317)
T ss_dssp CCEEEC--------------CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred Cccccc--------------ccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEc
Confidence 887632 335789999999999999854 448889999999999999986 5667888999999999
Q ss_pred cCCccC-ccccccccCCCCCCEEEccCC
Q 016686 258 RDAVLT-NSGLGSFKPPRSLKLLDLHGG 284 (384)
Q Consensus 258 ~~n~l~-~~~~~~~~~~~~L~~L~l~~n 284 (384)
++|++. +..+..+..++.|+.++++++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCc
Confidence 999998 556677777788887777644
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.7e-27 Score=210.99 Aligned_cols=247 Identities=19% Similarity=0.124 Sum_probs=195.7
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCc--hhHH-----hhhcCCCCccEEEeecCCCCCc--ccc--
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFIN--EREA-----FLYIETSLLSFLDVSNSSLSRF--CFL-- 88 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-----~~~~~l~~L~~L~ls~n~l~~~--~~~-- 88 (384)
..++|++|++++|.+ .+|..++.. |++|++++|.++. ++.. +.+.++++|++|++++|.+.+. ..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 455788899999998 777766633 8899999988854 2221 1223689999999999998754 333
Q ss_pred cCCCCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH--HHHhh
Q 016686 89 TQMKALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY--AISYM 162 (384)
Q Consensus 89 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~l 162 (384)
..+++|++|++++|.+++. |..+..+. ++|++|++++|++.+..+..+ +.+++|++|++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7899999999999999876 55555542 789999999999987766555 6789999999999998765 34444
Q ss_pred --hCCCCccEEEeeCCcCCcch--hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc-cccccCCCCcEEEcCCCC
Q 016686 163 --SMMPSLKFIDISNTDIKGFI--QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL-FPLSTFKELIHLSLRNAS 237 (384)
Q Consensus 163 --~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~ 237 (384)
..+++|++|++++|.+++.. +.. .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSA-----------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHH-----------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHH-----------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 78899999999999998532 221 45678999999999999998764 455678999999999999
Q ss_pred CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCC
Q 016686 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 287 (384)
++. +|..+. ++|++|++++|++++. |. +..+++|++|++++|++.
T Consensus 265 l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 265 LKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 984 565555 8999999999999986 44 788899999999999984
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=5.5e-27 Score=212.33 Aligned_cols=245 Identities=19% Similarity=0.209 Sum_probs=195.7
Q ss_pred CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchh--HHhhCc-------CCCCccEEeccCCCCCc-hhHHhhhcCCC
Q 016686 3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDS--ILEGNE-------NKAPLAKISLAGTTFIN-EREAFLYIETS 70 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~--~~~~~~-------~~~~L~~L~l~~n~~~~-~~~~~~~~~l~ 70 (384)
++|++|++++|.+ .+|. ...|++|++++|.+.. ++..+. .+++|++|++++|.+++ .+..+.+..++
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 4577888888888 6552 2248899999998853 555444 78999999999999986 44432126899
Q ss_pred CccEEEeecCCCCCc-ccccCC-----CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchH--HHHH-HhCC
Q 016686 71 LLSFLDVSNSSLSRF-CFLTQM-----KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAG--VGIL-AGHL 141 (384)
Q Consensus 71 ~L~~L~ls~n~l~~~-~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~-~~~l 141 (384)
+|++|++++|.+.+. ..+..+ ++|++|++++|.+.+..+..+..+ ++|+.|++++|++.+.. +..+ ++.+
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF-PALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC-SSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC-CCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999999876 233343 899999999999998777888888 99999999999987652 2232 2678
Q ss_pred CCCCEEeccCCCCCh---HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686 142 PNLEILSLSGTQIDD---YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 218 (384)
Q Consensus 142 ~~L~~L~l~~n~i~~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 218 (384)
++|++|++++|.+++ .....+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.++. +
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~-i 268 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-----------SCDWPSQLNSLNLSFTGLKQ-V 268 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-----------CCCCCTTCCEEECTTSCCSS-C
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-----------hhhhcCCCCEEECCCCccCh-h
Confidence 999999999999983 33345568899999999999999876431 46678999999999999995 5
Q ss_pred ccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686 219 LFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 219 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 55555 8999999999999986 44 88999999999999999864
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.3e-25 Score=211.65 Aligned_cols=221 Identities=18% Similarity=0.212 Sum_probs=176.7
Q ss_pred CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686 43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 122 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 122 (384)
.+++|++|++++|.++++++. .|..+++|++|++++|.+.+...+..+++|++|++++|.+++.. .. ++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----~~-~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VG-PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----EC-TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----CC-CCcCEE
Confidence 344788888888888877654 36688888888888888877655888888888888888887533 23 788899
Q ss_pred EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhc-CC
Q 016686 123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQ-NL 201 (384)
Q Consensus 123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~-~~ 201 (384)
++++|.+++..+ ..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+. .+. .+
T Consensus 105 ~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~~l 168 (487)
T 3oja_A 105 HAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA------------ELAASS 168 (487)
T ss_dssp ECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG------------GGGGGT
T ss_pred ECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH------------HHhhhC
Confidence 999888876544 2467899999999998887777788889999999999999887666 343 68
Q ss_pred CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEc
Q 016686 202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281 (384)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 281 (384)
++|+.|++++|.+++.. ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ .|..+..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 89999999999998863 34468899999999999988555 47888999999999999987 5666778889999999
Q ss_pred cCCcCCCHH
Q 016686 282 HGGWLLTED 290 (384)
Q Consensus 282 ~~n~~~~~~ 290 (384)
++|++.++.
T Consensus 245 ~~N~l~c~~ 253 (487)
T 3oja_A 245 RGNGFHCGT 253 (487)
T ss_dssp TTCCBCHHH
T ss_pred CCCCCcCcc
Confidence 999985443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=6.7e-26 Score=217.29 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=173.5
Q ss_pred CCCCCcEEEccCCCchhHH-hhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEE
Q 016686 20 NISSLECLNLSNCTIDSIL-EGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLD 98 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~ 98 (384)
.+++|++|++++|.+++++ ..+..+++|++|++++|.+++.++ +..+++|++|++++|.+.+++. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV---GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC---CCCcCEEE
Confidence 4457888888888888764 455588888888888888876554 4578888888888887766542 37788888
Q ss_pred eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCc
Q 016686 99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTD 177 (384)
Q Consensus 99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~ 177 (384)
+++|.+++..+. .+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 106 L~~N~l~~~~~~---~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSCS---RG-QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEEC---CC-SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CcCCcCCCCCcc---cc-CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 888888765442 34 778888888888877655544 4578888888888888876666665 67888888888888
Q ss_pred CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686 178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l 257 (384)
+++..+ ...+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus 181 l~~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 181 IYDVKG--------------QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp CCEEEC--------------CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred cccccc--------------cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 876632 3357788888888888887544 47778888888888888886 5666777888888888
Q ss_pred cCCccC-ccccccccCCCCCCEEEcc
Q 016686 258 RDAVLT-NSGLGSFKPPRSLKLLDLH 282 (384)
Q Consensus 258 ~~n~l~-~~~~~~~~~~~~L~~L~l~ 282 (384)
++|.+. +..+..+..++.|+.++++
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888887 4455556666666666654
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.3e-24 Score=207.53 Aligned_cols=256 Identities=18% Similarity=0.161 Sum_probs=152.3
Q ss_pred CCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 4 RLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
++++|++++|.++.+|. .++|++|++++|.|+.+|. .+++|++|++++|.++.++. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCc
Confidence 46667777777766652 3467777777777766655 45667777777777665543 44666677777666
Q ss_pred CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686 82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161 (384)
Q Consensus 82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 161 (384)
++.++. .+++|+.|++++|.++. +|. .+ ++|+.|++++|.+++.. ..+++|+.|++++|.++...
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~-lp~---~l-~~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTS-LPV---LP-PGLQELSVSDNQLASLP-----ALPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC---
T ss_pred CCCCCC--CCCCcCEEECCCCCCCc-CCC---CC-CCCCEEECcCCcCCCcC-----CccCCCCEEECCCCCCCCCc---
Confidence 666543 45566666666666553 221 12 56666666666655321 12344555555555544321
Q ss_pred hhCCCCccEEEeeCCcCCcchhhc------ccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCC
Q 016686 162 MSMMPSLKFIDISNTDIKGFIQQV------GAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN 235 (384)
Q Consensus 162 l~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 235 (384)
..+++|+.|++++|.+++..... ....|.+..++ ..+++|+.|++++|.+++. | ..+++|++|++++
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~ 250 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSL-P---VLPSELKELMVSG 250 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC--CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCS
T ss_pred -ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccC--CCCCCCCEEEccCCccCcC-C---CCCCcCcEEECCC
Confidence 23344555555555544321100 00001111111 1236788888888888773 3 4567888888888
Q ss_pred CCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHH
Q 016686 236 ASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQF 295 (384)
Q Consensus 236 n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 295 (384)
|.+++.. . .+++|+.|++++|.++. .|..+..+++|+.|++++|++ ++..+..+
T Consensus 251 N~L~~lp-~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l-~~~~~~~l 304 (622)
T 3g06_A 251 NRLTSLP-M---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPL-SERTLQAL 304 (622)
T ss_dssp SCCSCCC-C---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCC-CHHHHHHH
T ss_pred CCCCcCC-c---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCC-CCcCHHHH
Confidence 8888633 2 56788889999888884 567788888899999999887 45444433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.7e-24 Score=210.60 Aligned_cols=246 Identities=18% Similarity=0.135 Sum_probs=184.7
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCC
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 102 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n 102 (384)
+++.|++++|.++.+|..++ ++|++|++++|.++.++. .+++|++|++++|.++.++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 68999999999999988776 899999999999998765 46899999999999988865 7899999999999
Q ss_pred CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcch
Q 016686 103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 182 (384)
Q Consensus 103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 182 (384)
.+++. +. .+ ++|+.|++++|.++... ..+++|++|++++|.+++.. ..+++|+.|++++|.+++..
T Consensus 112 ~l~~l-~~---~l-~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 112 PLTHL-PA---LP-SGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCCC-CC---CC-TTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCC
T ss_pred cCCCC-CC---CC-CCcCEEECCCCCCCcCC-----CCCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCCCc
Confidence 99853 33 34 89999999999988632 23689999999999988532 24578999999999998753
Q ss_pred hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCcc
Q 016686 183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVL 262 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 262 (384)
. .+++|+.|++++|.+++.. . ..++|+.|++++|.++... ..+++|+.|++++|.+
T Consensus 178 -~---------------~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 178 -M---------------LPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRL 233 (622)
T ss_dssp -C---------------CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCC----CCCTTCCEEECCSSCC
T ss_pred -c---------------cCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccccC----CCCCCCCEEEccCCcc
Confidence 2 4578889999999888742 2 2367777777777777532 1246777777777777
Q ss_pred CccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhhh
Q 016686 263 TNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRASL 333 (384)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~l 333 (384)
++. + ..+++|+.|++++|.+.+.+. .++++. .+++++|.++ .+|..+..++++
T Consensus 234 ~~l-p---~~l~~L~~L~Ls~N~L~~lp~------~~~~L~-------~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 234 TSL-P---VLPSELKELMVSGNRLTSLPM------LPSGLL-------SLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp SCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCC-------EEECCSSCCC-SCCGGGGGSCTT
T ss_pred CcC-C---CCCCcCcEEECCCCCCCcCCc------ccccCc-------EEeCCCCCCC-cCCHHHhhcccc
Confidence 763 2 334677777777777632111 223333 5666777776 567666666665
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=5.3e-24 Score=209.55 Aligned_cols=302 Identities=14% Similarity=0.150 Sum_probs=208.1
Q ss_pred CCCCcEEEccCCCCCCC---------CCCCCCcEEEccCCCch-----hHHhhCcCCCCccEEeccCCCCCchhHHhhhc
Q 016686 2 FPRLSFLNLAWTGVTKL---------PNISSLECLNLSNCTID-----SILEGNENKAPLAKISLAGTTFINEREAFLYI 67 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l---------~~~~~L~~L~ls~n~i~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 67 (384)
+++|++|++++|.+++. ..+++|++|++++|.++ .++..+..+++|++|++++|.+.+++.. +.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~--~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF--FK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH--HH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH--Hh
Confidence 57778888887765432 15677888888777764 3444444778888888888777766543 33
Q ss_pred CCCCccEEEeecCCC---------------------------CCc-ccccCCCCccEEEeeCCCCCchhHHH-HHhccCC
Q 016686 68 ETSLLSFLDVSNSSL---------------------------SRF-CFLTQMKALEHLDLSSSMIGDDSVEM-VACVGAN 118 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l---------------------------~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~ 118 (384)
.+++|++|+++.... ..+ ..+..+++|++|++++|.+++..... +..+ ++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-TT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-cC
Confidence 667777777753211 111 23445667888888888776554433 4555 78
Q ss_pred ccEEEccCCCCCchHHHHHHhCCCCCCEEecc-----------CCCCChHHHHh-hhCCCCccEEEeeCCcCCcchhhcc
Q 016686 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLS-----------GTQIDDYAISY-MSMMPSLKFIDISNTDIKGFIQQVG 186 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~-----------~n~i~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~ 186 (384)
|+.|+++ +.+.......+...+++|++|+++ .+.+++..... ...+++|++|+++.+.+++....
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~-- 396 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE-- 396 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH--
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH--
Confidence 8888887 445545555555667888888887 35666554433 34578888888877777765444
Q ss_pred cchhhhhhHHhhcC-CCCCCEEEcc----CCCCCcc-----cccccccCCCCcEEEcCCCC--CChhhHHhcc-CCCCCC
Q 016686 187 AETDLVLSLTALQN-LNHLERLNLE----QTQVSDA-----TLFPLSTFKELIHLSLRNAS--LTDVSLHQLS-SLSKLT 253 (384)
Q Consensus 187 ~~~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~-~~~~L~ 253 (384)
.+.. +++|+.|+++ .|.+++. .+..+..+++|++|++++|. +++..+..++ .+++|+
T Consensus 397 ----------~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~ 466 (592)
T 3ogk_B 397 ----------SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466 (592)
T ss_dssp ----------HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCC
T ss_pred ----------HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccce
Confidence 3443 7889999996 5677763 23335678999999997654 7777666665 489999
Q ss_pred EEEccCCccCcccc-ccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch
Q 016686 254 NLSIRDAVLTNSGL-GSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT 327 (384)
Q Consensus 254 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~ 327 (384)
+|++++|.+++.+. ..+..+++|++|++++|.+ ++.++..+...++.++ .+++++|++++.-...+
T Consensus 467 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~-------~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 467 WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLR-------YLWVQGYRASMTGQDLM 533 (592)
T ss_dssp EEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC-BHHHHHHHHHHCSSCC-------EEEEESCBCCTTCTTGG
T ss_pred EeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC-cHHHHHHHHHhcCccC-------eeECcCCcCCHHHHHHH
Confidence 99999999987543 3456789999999999996 8888888888888887 67888888876544433
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=3e-24 Score=211.35 Aligned_cols=292 Identities=17% Similarity=0.165 Sum_probs=221.5
Q ss_pred CCCCcEEEccCCCCCCCC---------CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCC-----------------
Q 016686 2 FPRLSFLNLAWTGVTKLP---------NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGT----------------- 55 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~l~---------~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n----------------- 55 (384)
+++|++|++++|.++++. ++++|++|++++|.+.+++..+..+++|++|+++..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 689999999999987432 689999999999999888766667777777777632
Q ss_pred ----------CCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHH-HhccCCccE
Q 016686 56 ----------TFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMV-ACVGANLRN 121 (384)
Q Consensus 56 ----------~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~ 121 (384)
....++.. +..+++|++|++++|.+.+. ..+..+++|++|+++ +.+.+.....+ ..+ ++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~-~~L~~ 346 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPIL--FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC-KQLKR 346 (592)
T ss_dssp TCCEEEETTCCTTTGGGG--GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC-TTCCE
T ss_pred cccccCccccchhHHHHH--HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC-CCCCE
Confidence 12223322 44788999999999997654 236889999999999 45554444444 555 99999
Q ss_pred EEcc-----------CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhC-CCCccEEEee----CCcCCcchhhc
Q 016686 122 LNLS-----------NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM-MPSLKFIDIS----NTDIKGFIQQV 185 (384)
Q Consensus 122 L~L~-----------~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~-~~~L~~L~l~----~n~l~~~~~~~ 185 (384)
|+++ .+.++......+...+++|++|++..+.+++..+..+.. +++|++|+++ .|.+++.+.+.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 9999 357887767666677999999999999999888888775 8999999997 55676531110
Q ss_pred ccchhhhhhHHhhcCCCCCCEEEccCCC--CCcccccccc-cCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCc
Q 016686 186 GAETDLVLSLTALQNLNHLERLNLEQTQ--VSDATLFPLS-TFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAV 261 (384)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~-~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~ 261 (384)
.+. ..+..+++|+.|+++.|. +++..+..+. .+++|++|++++|.+++.. +..+..+++|++|++++|.
T Consensus 427 -----~~~--~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 427 -----GVR--SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp -----HHH--HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred -----HHH--HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 000 135678999999998653 7776555554 4899999999999998854 4556789999999999999
Q ss_pred cCccccc-cccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceee
Q 016686 262 LTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVW 305 (384)
Q Consensus 262 l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~ 305 (384)
+++.... .+..+++|++|++++|++ +..++..+...+|.+.+.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~i-t~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRA-SMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBC-CTTCTTGGGGCCTTEEEE
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcC-CHHHHHHHHHhCCCcEEE
Confidence 8876444 345679999999999996 666666677777877643
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.8e-24 Score=201.66 Aligned_cols=244 Identities=17% Similarity=0.195 Sum_probs=163.4
Q ss_pred hHHhhCcCCCCccEEeccCCCCCchhHH-h--hhcCCCCccEEEeecCCCCCc------------ccccCCCCccEEEee
Q 016686 36 SILEGNENKAPLAKISLAGTTFINEREA-F--LYIETSLLSFLDVSNSSLSRF------------CFLTQMKALEHLDLS 100 (384)
Q Consensus 36 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~--~~~~l~~L~~L~ls~n~l~~~------------~~~~~~~~L~~L~L~ 100 (384)
.++..+..+++|++|++++|.++..... + .+.++++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3444444666677777777766653221 1 134567777777776644322 123567778888888
Q ss_pred CCCCCc----hhHHHHHhccCCccEEEccCCCCCchHHHHHHh---CC---------CCCCEEeccCCCCCh-HHH---H
Q 016686 101 SSMIGD----DSVEMVACVGANLRNLNLSNTRFSSAGVGILAG---HL---------PNLEILSLSGTQIDD-YAI---S 160 (384)
Q Consensus 101 ~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---~l---------~~L~~L~l~~n~i~~-~~~---~ 160 (384)
+|.+.. .++..+..+ ++|+.|++++|.++...+..+.. .+ ++|++|++++|++++ ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 887776 356667777 78888888888876544433322 22 788888888888873 233 3
Q ss_pred hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH-hhcCCCCCCEEEccCCCCC----cccccccccCCCCcEEEcCC
Q 016686 161 YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT-ALQNLNHLERLNLEQTQVS----DATLFPLSTFKELIHLSLRN 235 (384)
Q Consensus 161 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~L~~ 235 (384)
.+..+++|++|++++|.+...... ...+ .+..+++|+.|++++|.++ ...+..+..+++|++|++++
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~--------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIE--------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHH--------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHhCCCcCEEECcCCCCCHhHHH--------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 566778888888888887732100 0011 4667888888888888886 44566777888888899988
Q ss_pred CCCChh----hHHhcc--CCCCCCEEEccCCccCcc----ccccc-cCCCCCCEEEccCCcCCC
Q 016686 236 ASLTDV----SLHQLS--SLSKLTNLSIRDAVLTNS----GLGSF-KPPRSLKLLDLHGGWLLT 288 (384)
Q Consensus 236 n~i~~~----~~~~l~--~~~~L~~L~l~~n~l~~~----~~~~~-~~~~~L~~L~l~~n~~~~ 288 (384)
|.+++. ++..+. .+++|++|++++|.+++. .+..+ ..+++|++|++++|++..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 888876 445553 388899999999888873 44444 456889999999988843
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=1.1e-23 Score=192.53 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=204.1
Q ss_pred CCccEEeccCCCCCchhHHhhhcCC--CCccEEEeecCCCCCc-ccccCCCCccEEEeeCCCCCch-hHHHHHhccCCcc
Q 016686 45 APLAKISLAGTTFINEREAFLYIET--SLLSFLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDD-SVEMVACVGANLR 120 (384)
Q Consensus 45 ~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~ 120 (384)
..+++++++++.+.. .. +..+ +.++.|++++|.+.+. +.+..+++|++|++++|.+.+. .+..+..+ ++|+
T Consensus 47 ~~~~~l~l~~~~~~~--~~--~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~-~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP--DV--TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC-SKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH--HH--HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB-CCCS
T ss_pred hhheeeccccccCCH--HH--HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC-CCCC
Confidence 458899999888873 22 2344 7899999999988766 5566789999999999998866 66777777 9999
Q ss_pred EEEccCCCCCchHHHHHHhCCCCCCEEeccCC-CCChH-HHHhhhCCCCccEEEeeCC-cCCcc-hhhcccchhhhhhHH
Q 016686 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMPSLKFIDISNT-DIKGF-IQQVGAETDLVLSLT 196 (384)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~~~~ 196 (384)
.|++++|.+++..+..+ +.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+.
T Consensus 122 ~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------ 188 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV------------ 188 (336)
T ss_dssp EEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH------------
T ss_pred EEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH------------
Confidence 99999999987777766 56899999999999 68864 5566788999999999999 88764 344
Q ss_pred hhcCCC-CCCEEEccCC--CCC-cccccccccCCCCcEEEcCCCC-CChhhHHhccCCCCCCEEEccCC-ccCccccccc
Q 016686 197 ALQNLN-HLERLNLEQT--QVS-DATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSLSKLTNLSIRDA-VLTNSGLGSF 270 (384)
Q Consensus 197 ~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~ 270 (384)
.+..++ +|++|++++| .++ +..+..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.+.....+
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 567788 9999999999 566 3455667789999999999998 78778888999999999999999 4555555567
Q ss_pred cCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhh
Q 016686 271 KPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSL 329 (384)
Q Consensus 271 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~ 329 (384)
..+++|++|++++| ++...+..+...++.++ +++|.+++..|..++.
T Consensus 269 ~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~----------l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 269 GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ----------INCSHFTTIARPTIGN 315 (336)
T ss_dssp GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE----------ESCCCSCCTTCSSCSS
T ss_pred hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE----------EecccCccccCCcccc
Confidence 88899999999999 46666777777777655 4578888888877664
No 73
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=6.4e-24 Score=194.15 Aligned_cols=201 Identities=19% Similarity=0.240 Sum_probs=87.8
Q ss_pred CCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686 45 APLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121 (384)
Q Consensus 45 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 121 (384)
++++.|++++|.+++..+. +.++++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+ ++|+.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSE
T ss_pred ccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC-CCCCE
Confidence 4444444444444433322 12344444444444444321 233444445555555444444444444444 45555
Q ss_pred EEccCC-CCCchHHHHHHhCCCCCCEEeccCC-CCChH-HHHhhhCCC-CccEEEeeCC--cCC-cchhhcccchhhhhh
Q 016686 122 LNLSNT-RFSSAGVGILAGHLPNLEILSLSGT-QIDDY-AISYMSMMP-SLKFIDISNT--DIK-GFIQQVGAETDLVLS 194 (384)
Q Consensus 122 L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~~~ 194 (384)
|++++| .+++......++.+++|++|++++| .+++. .+..+..++ +|++|++++| .++ +..+.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~---------- 216 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST---------- 216 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH----------
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH----------
Confidence 555554 3443322222334445555555544 44432 233344444 4555555544 222 11122
Q ss_pred HHhhcCCCCCCEEEccCCC-CCcccccccccCCCCcEEEcCCC-CCChhhHHhccCCCCCCEEEccCC
Q 016686 195 LTALQNLNHLERLNLEQTQ-VSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSLSKLTNLSIRDA 260 (384)
Q Consensus 195 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~L~~L~l~~n 260 (384)
.+..+++|+.|++++|. +++..+..+..+++|++|++++| .+.......++.+++|++|++++|
T Consensus 217 --~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 --LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred --HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 23344455555555554 44434444444455555555554 233322233444555555555554
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-23 Score=196.28 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=188.0
Q ss_pred CCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCCCCc----hhHHh-----hhcCCCCccEEEeecCCCCCc
Q 016686 20 NISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTTFIN----EREAF-----LYIETSLLSFLDVSNSSLSRF 85 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~-----~~~~l~~L~~L~ls~n~l~~~ 85 (384)
.+++|++|++++|.+.. ++..+..+++|++|++++|.+.. ++..+ .+..+++|++|++++|.+...
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 68899999999999874 44456689999999999976542 22222 145889999999999999872
Q ss_pred ------ccccCCCCccEEEeeCCCCCchhHHHHHhcc------------CCccEEEccCCCCCchHHH---HHHhCCCCC
Q 016686 86 ------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG------------ANLRNLNLSNTRFSSAGVG---ILAGHLPNL 144 (384)
Q Consensus 86 ------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~------------~~L~~L~L~~n~l~~~~~~---~~~~~l~~L 144 (384)
..+..+++|++|++++|.++...+..+...+ ++|+.|++++|.++..... ..++.+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 4678899999999999999765555554432 6999999999999844333 233568999
Q ss_pred CEEeccCCCCChH-----HHHhhhCCCCccEEEeeCCcCC----cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686 145 EILSLSGTQIDDY-----AISYMSMMPSLKFIDISNTDIK----GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 215 (384)
Q Consensus 145 ~~L~l~~n~i~~~-----~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 215 (384)
++|++++|.+++. .+..+..+++|+.|++++|.++ ..++. .+..+++|+.|++++|.++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~------------~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI------------ALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH------------HGGGCTTCCEEECTTCCCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH------------HHccCCCcCEEECCCCCCc
Confidence 9999999999843 2237778999999999999986 33444 6788999999999999999
Q ss_pred cc----cccccc--cCCCCcEEEcCCCCCCh----hhHHhc-cCCCCCCEEEccCCccCcccc
Q 016686 216 DA----TLFPLS--TFKELIHLSLRNASLTD----VSLHQL-SSLSKLTNLSIRDAVLTNSGL 267 (384)
Q Consensus 216 ~~----~~~~l~--~~~~L~~L~L~~n~i~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~~ 267 (384)
+. ++..+. .+++|++|++++|.+++ .++..+ .++++|++|++++|.+++..+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 86 344553 38999999999999998 466666 668999999999999998763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.5e-24 Score=190.49 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=75.6
Q ss_pred EEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCC
Q 016686 27 LNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMI 104 (384)
Q Consensus 27 L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l 104 (384)
++..+..+..+|..+. ++|++|++++|.++++++. .|.++++|++|++++|.+..++ .+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444444445554443 3566666666666555442 2445566666666666555542 355556666666666665
Q ss_pred CchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH-HHHhhhCCCCccEEEeeCCcCCcc
Q 016686 105 GDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY-AISYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 105 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
++..+..+..+ ++|+.|++++|.+.+.....+ +.+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 89 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 89 QSLALGAFSGL-SSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CEECTTTTTTC-TTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CccChhhhcCC-ccccEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 54444444444 555555555555543322111 3345555555555554432 233444445555555555544443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.8e-24 Score=189.11 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=141.7
Q ss_pred ccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCC
Q 016686 88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPS 167 (384)
Q Consensus 88 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~ 167 (384)
...+++|+.|++++|.+... ..+..+ ++|+.|++++|.+.+.. . ++.+++|++|++++|.+++..+..+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHDIS--A-LKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCCCG--G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCCch--h-hcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 33344444444444444321 123333 44555555555444321 1 245666777777766666555555667777
Q ss_pred ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686 168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 247 (384)
Q Consensus 168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 247 (384)
|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 111 L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDG------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCEEECTTSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCEEECCCCcCCccCHH------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 77777777777766555 467778888888888888876666677788888888888888877776778
Q ss_pred CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCch
Q 016686 248 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRT 327 (384)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~ 327 (384)
.+++|++|++++|.+++..+..+..+++|+.|++++|++.+ .+|.++ .+.++.|.++|.+|.++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------~~~~l~-------~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------TCPGIR-------YLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------CTTTTH-------HHHHHHHHTGGGBBCTT
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------cCcHHH-------HHHHHHHhCCCcccCcc
Confidence 88888888888888888777777888888888888888743 244444 45566778888888887
Q ss_pred hhhhhh
Q 016686 328 SLRASL 333 (384)
Q Consensus 328 ~~~~~l 333 (384)
+.+...
T Consensus 243 ~~~~~~ 248 (272)
T 3rfs_A 243 GSVAPD 248 (272)
T ss_dssp SCBCGG
T ss_pred cccCCC
Confidence 766543
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.7e-24 Score=187.89 Aligned_cols=223 Identities=19% Similarity=0.208 Sum_probs=187.8
Q ss_pred EEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccC
Q 016686 49 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 126 (384)
Q Consensus 49 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 126 (384)
.++..+..++.+|..+. ++|++|++++|.+..++ .+..+++|++|++++|.++...+..+..+ ++|+.|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~----~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCSSSC----TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTT
T ss_pred eEEecCCCccccCCCCC----CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC-cCCCEEECCC
Confidence 45566667777766432 67999999999998883 78899999999999999997777778888 9999999999
Q ss_pred CCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcc-hhhcccchhhhhhHHhhcCCCCCC
Q 016686 127 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGF-IQQVGAETDLVLSLTALQNLNHLE 205 (384)
Q Consensus 127 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~ 205 (384)
|.+++..+..+ +.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+. .+..+++|+
T Consensus 86 n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~------------~~~~l~~L~ 152 (276)
T 2z62_A 86 NPIQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE------------YFSNLTNLE 152 (276)
T ss_dssp CCCCEECTTTT-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG------------GGGGCTTCC
T ss_pred CccCccChhhh-cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch------------hhccCCCCC
Confidence 99987665554 6789999999999999876665688999999999999999874 355 688899999
Q ss_pred EEEccCCCCCcccccccccCCCCc----EEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEc
Q 016686 206 RLNLEQTQVSDATLFPLSTFKELI----HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDL 281 (384)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~~~~L~----~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 281 (384)
.|++++|.+++..+..+..+++|+ .+++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 999999999998777777666666 899999999986655554 458999999999999877777888999999999
Q ss_pred cCCcCCCHH
Q 016686 282 HGGWLLTED 290 (384)
Q Consensus 282 ~~n~~~~~~ 290 (384)
++|++.+.+
T Consensus 232 ~~N~~~c~c 240 (276)
T 2z62_A 232 HTNPWDCSC 240 (276)
T ss_dssp CSSCBCCCT
T ss_pred cCCcccccC
Confidence 999996644
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-23 Score=194.70 Aligned_cols=254 Identities=16% Similarity=0.181 Sum_probs=158.2
Q ss_pred EEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHH---hhhcCCC-CccEEEeecCCCCCc--ccccC----C-CC
Q 016686 26 CLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREA---FLYIETS-LLSFLDVSNSSLSRF--CFLTQ----M-KA 93 (384)
Q Consensus 26 ~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~ls~n~l~~~--~~~~~----~-~~ 93 (384)
++.++.|.+++..+.+. ..++|++|++++|.++..... -.+.+++ +|++|++++|.+... ..+.. . ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45667777775433333 444577888877777665430 1244666 778888877777654 22222 2 77
Q ss_pred ccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHH---hC-CCCCCEEeccCCCCChH----HHHh
Q 016686 94 LEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILA---GH-LPNLEILSLSGTQIDDY----AISY 161 (384)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~---~~-l~~L~~L~l~~n~i~~~----~~~~ 161 (384)
|++|++++|.+++..+..+.... ++|+.|++++|.+++..+..+. .. .++|++|++++|.+++. .+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888877765555444321 4778888888877665544432 22 35788888888877643 2334
Q ss_pred hhCCC-CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC-CCCCEEEccCCCCCccc----cccccc-CCCCcEEEcC
Q 016686 162 MSMMP-SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDAT----LFPLST-FKELIHLSLR 234 (384)
Q Consensus 162 l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~----~~~l~~-~~~L~~L~L~ 234 (384)
+...+ +|++|++++|.+++..+..+ ...+..+ ++|++|++++|.+++.. +..+.. .++|++|+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l--------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAEL--------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHH--------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HhcCCccccEeeecCCCCchhhHHHH--------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 44554 78888888887766544310 0134445 47888888888777632 233333 4578888888
Q ss_pred CCCCChhhH----HhccCCCCCCEEEccCCccCcccc-------ccccCCCCCCEEEccCCcCC
Q 016686 235 NASLTDVSL----HQLSSLSKLTNLSIRDAVLTNSGL-------GSFKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 235 ~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~~L~l~~n~~~ 287 (384)
+|.+++..+ ..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 888776543 334567788888888887443322 24556677888888888873
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.3e-23 Score=186.29 Aligned_cols=196 Identities=17% Similarity=0.229 Sum_probs=104.7
Q ss_pred CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686 68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 147 (384)
.+++|+.|++++|.+..++.+..+++|++|++++|.+.+. ..+..+ ++|+.|++++|.+++..+..+ +.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKEL-TNLTYLILTGNQLQSLPNGVF-DKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCC-CCCCEEECCCCccCccChhHh-cCCcCCCEE
Confidence 3455555555555555544455555555555555555432 234444 555555555555554333222 345555555
Q ss_pred eccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCC
Q 016686 148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKE 227 (384)
Q Consensus 148 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 227 (384)
++++|.+++..+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+++..+..+..+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH------------HhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 5555555544444455555666666666655554444 3455566666666666665554444555566
Q ss_pred CcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 228 LIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 228 L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
|++|++++|.+++..+..+..+++|+.|++++|++.+ .++.++.++++.|.+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 6666666666665555555556666666666665543 234455555555444
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7e-23 Score=181.43 Aligned_cols=202 Identities=17% Similarity=0.229 Sum_probs=133.4
Q ss_pred CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEE
Q 016686 46 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 123 (384)
Q Consensus 46 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 123 (384)
..+.++++++.++.++..+. +.+++|++++|.+..++ .+..+++|++|++++|.++...+..+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~----------- 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF----------- 81 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT-----------
T ss_pred CCCEEEccCCCCCccCCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh-----------
Confidence 45666666666666554321 45666666666665552 45556666666666665553222222
Q ss_pred ccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCC
Q 016686 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNH 203 (384)
Q Consensus 124 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (384)
+.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++
T Consensus 82 ---------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~ 134 (270)
T 2o6q_A 82 ---------------KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------------VFDSLTK 134 (270)
T ss_dssp ---------------SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------------TTTTCTT
T ss_pred ---------------cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH------------HhCcCcC
Confidence 3345555555555555544444555666777777777777666555 4667777
Q ss_pred CCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccC
Q 016686 204 LERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHG 283 (384)
Q Consensus 204 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 283 (384)
|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 135 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 135 LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 88888888877776655677778888888888887776666677788888888888888876666677778888888888
Q ss_pred CcCCCH
Q 016686 284 GWLLTE 289 (384)
Q Consensus 284 n~~~~~ 289 (384)
|++.+.
T Consensus 215 N~~~c~ 220 (270)
T 2o6q_A 215 NPWDCT 220 (270)
T ss_dssp SCBCCS
T ss_pred CCeeCC
Confidence 877543
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.3e-23 Score=181.69 Aligned_cols=202 Identities=17% Similarity=0.266 Sum_probs=146.3
Q ss_pred CCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc--cccCCCCccEEEe
Q 016686 22 SSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC--FLTQMKALEHLDL 99 (384)
Q Consensus 22 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~~L~~L~L 99 (384)
.+.++++++++.++.+|..+. +++++|++++|.++.+++. .|.++++|++|++++|.+..++ .+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 368899999999999987665 7899999999999988764 4679999999999999998873 4678999999999
Q ss_pred eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 179 (384)
Q Consensus 100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~ 179 (384)
++|.+....+..+..+ ++|+.|++++|.+++ ..+..+..+++|++|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQL-VNLAELRLDRNQLKS-------------------------LPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCCCCCTTTTTTC-SSCCEEECCSSCCCC-------------------------CCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCcCCHhHcccc-cCCCEEECCCCccCe-------------------------eCHHHhCcCcCCCEEECCCCcCC
Confidence 9998885544444444 556666665555543 33334445556666666666665
Q ss_pred cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686 180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~ 259 (384)
+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 147 ~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 147 SLPKG------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCCTT------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCHh------------HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 55444 456666777777777777666555566677777777777777766555667777777777777
Q ss_pred CccCc
Q 016686 260 AVLTN 264 (384)
Q Consensus 260 n~l~~ 264 (384)
|++..
T Consensus 215 N~~~c 219 (270)
T 2o6q_A 215 NPWDC 219 (270)
T ss_dssp SCBCC
T ss_pred CCeeC
Confidence 77654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=9.5e-23 Score=188.34 Aligned_cols=283 Identities=16% Similarity=0.136 Sum_probs=205.5
Q ss_pred EEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc------ccccCCC-CccEEEeeCCCCCchhHHHHHhc----cC
Q 016686 49 KISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF------CFLTQMK-ALEHLDLSSSMIGDDSVEMVACV----GA 117 (384)
Q Consensus 49 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~------~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~----~~ 117 (384)
...+++|.+++..+.+ +...++|++|++++|.+... ..+..++ +|++|++++|.+++..+..+..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4678899999877664 33445699999999998776 3567788 89999999999998777777663 27
Q ss_pred CccEEEccCCCCCchHHHHHH---hCC-CCCCEEeccCCCCChHHHHhhh----C-CCCccEEEeeCCcCCcchhhcccc
Q 016686 118 NLRNLNLSNTRFSSAGVGILA---GHL-PNLEILSLSGTQIDDYAISYMS----M-MPSLKFIDISNTDIKGFIQQVGAE 188 (384)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~---~~l-~~L~~L~l~~n~i~~~~~~~l~----~-~~~L~~L~l~~n~l~~~~~~~~~~ 188 (384)
+|+.|++++|.+++..+..+. ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--- 157 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE--- 157 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH---
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH---
Confidence 899999999999866554332 334 8999999999999876655543 3 469999999999998543321
Q ss_pred hhhhhhHHhhcCCC-CCCEEEccCCCCCcccccccc----cC-CCCcEEEcCCCCCChh----hHHhccC-CCCCCEEEc
Q 016686 189 TDLVLSLTALQNLN-HLERLNLEQTQVSDATLFPLS----TF-KELIHLSLRNASLTDV----SLHQLSS-LSKLTNLSI 257 (384)
Q Consensus 189 ~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~----~~-~~L~~L~L~~n~i~~~----~~~~l~~-~~~L~~L~l 257 (384)
-...+...+ +|++|++++|.+++..+..+. .+ ++|++|++++|.+++. ++..+.. .++|++|++
T Consensus 158 -----l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 158 -----LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp -----HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred -----HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 001445555 999999999999887665443 45 5999999999999874 3445554 569999999
Q ss_pred cCCccCccccc----cccCCCCCCEEEccCCcC--CCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhh
Q 016686 258 RDAVLTNSGLG----SFKPPRSLKLLDLHGGWL--LTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRA 331 (384)
Q Consensus 258 ~~n~l~~~~~~----~~~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~ 331 (384)
++|.+++.++. .+..+++|++|++++|.+ ++......+...++.+.- ...+++++|.+.+..+..+...-
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~----L~~LdL~~N~l~~~~~~~~~~~l 308 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK----IILVDKNGKEIHPSHSIPISNLI 308 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE----EEEECTTSCBCCGGGCHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc----eEEEecCCCcCCCcchHHHHHHH
Confidence 99999987653 446678999999999982 255666666665554431 12678999998876555544322
Q ss_pred hhhhhcCCCCCCch
Q 016686 332 SLVKQKQDPMPMSH 345 (384)
Q Consensus 332 ~l~n~l~~~ip~~~ 345 (384)
+- ....+.+|..+
T Consensus 309 ~~-~~~~~~~psll 321 (362)
T 3goz_A 309 RE-LSGKADVPSLL 321 (362)
T ss_dssp HH-HHTCCCTTTC-
T ss_pred HH-CCCCcchHHHH
Confidence 21 22344566654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=9.4e-23 Score=182.30 Aligned_cols=207 Identities=25% Similarity=0.265 Sum_probs=147.9
Q ss_pred CCCCccEEEeecCCCCCcc-cccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCE
Q 016686 68 ETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEI 146 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 146 (384)
+++++++++++++.++.++ .+ .++++.|++++|.+++..+..+..+ ++|+.|++++|.+++.... +.+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~---~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD---GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC---SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC---CCCCcCCE
Confidence 4445555555555554442 11 1345555555555554444455555 5666666666655543221 35677777
Q ss_pred EeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686 147 LSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226 (384)
Q Consensus 147 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 226 (384)
|++++|.++ ..|..+..+++|++|++++|++++..+. .+..+++|+.|++++|++++..+..+..++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 148 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG------------ALRGLGELQELYLKGNELKTLPPGLLTPTP 148 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSS------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHH------------HHcCCCCCCEEECCCCCCCccChhhccccc
Confidence 777777776 3344566788889999999988877666 688889999999999999987777788899
Q ss_pred CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHH
Q 016686 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQ 294 (384)
Q Consensus 227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 294 (384)
+|+.|++++|++++..+..+..+++|++|++++|+++. .|..+...++|+.+++++|++.+.+.+..
T Consensus 149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C~c~~~~ 215 (290)
T 1p9a_G 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLCNCEILY 215 (290)
T ss_dssp TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccCcCccHH
Confidence 99999999999998777778889999999999999986 55666677899999999999977665433
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.9e-23 Score=184.15 Aligned_cols=203 Identities=15% Similarity=0.154 Sum_probs=119.8
Q ss_pred CCCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEE
Q 016686 18 LPNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHL 97 (384)
Q Consensus 18 l~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L 97 (384)
+++++++++++++++.++.+|..+. +++++|++++|.++.+++. .|..+++|++|++++|.++.++....+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 3466778888888888887776665 6788888888888876554 366788888888888888777555677777777
Q ss_pred EeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCc
Q 016686 98 DLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTD 177 (384)
Q Consensus 98 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~ 177 (384)
++++|.+. .+|..+..+ ++|+.|++++|++++ ..+..|..+++|++|++++|.
T Consensus 83 ~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~-------------------------l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTS-------------------------LPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCC-------------------------CCSSTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhccC-CCCCEEECCCCcCcc-------------------------cCHHHHcCCCCCCEEECCCCC
Confidence 77777776 233333334 455555555555443 333334444444455555544
Q ss_pred CCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686 178 IKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l 257 (384)
+.+..+. .+..+++|+.|++++|++++..+..+..+++|++|++++|+++. +|..+...++|+.+++
T Consensus 136 l~~~~~~------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 136 LKTLPPG------------LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CCCCCTT------------TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEEC
T ss_pred CCccChh------------hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEe
Confidence 4444333 34444555555555555554433344445555555555555553 3334444455555555
Q ss_pred cCCccC
Q 016686 258 RDAVLT 263 (384)
Q Consensus 258 ~~n~l~ 263 (384)
++|++.
T Consensus 203 ~~Np~~ 208 (290)
T 1p9a_G 203 HGNPWL 208 (290)
T ss_dssp CSCCBC
T ss_pred CCCCcc
Confidence 555543
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=4e-22 Score=196.19 Aligned_cols=292 Identities=20% Similarity=0.239 Sum_probs=186.4
Q ss_pred CCCCcEEEccCCCCCC--------CC-CCCCCcEEEccCCC--ch--hHHhhCcCCCCccEEeccCC-CCCchhHHhh--
Q 016686 2 FPRLSFLNLAWTGVTK--------LP-NISSLECLNLSNCT--ID--SILEGNENKAPLAKISLAGT-TFINEREAFL-- 65 (384)
Q Consensus 2 l~~L~~L~l~~n~i~~--------l~-~~~~L~~L~ls~n~--i~--~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~-- 65 (384)
+++|++|++++|.+++ ++ .+++|++|++++|. +. .+......+++|++|++++| .+++++..+.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 6788999998887543 22 67788888888876 32 23322235677788877776 2222111110
Q ss_pred --------------------------------------------------hcCCCCccEEEeecCCCCCc---ccccCCC
Q 016686 66 --------------------------------------------------YIETSLLSFLDVSNSSLSRF---CFLTQMK 92 (384)
Q Consensus 66 --------------------------------------------------~~~l~~L~~L~ls~n~l~~~---~~~~~~~ 92 (384)
+..+++|++|++++|.+... ..+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 11345666666666664432 1244566
Q ss_pred CccEEEeeCCCCCchhHHHHH-hccCCccEEEcc---------CCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhh
Q 016686 93 ALEHLDLSSSMIGDDSVEMVA-CVGANLRNLNLS---------NTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYM 162 (384)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~L~---------~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l 162 (384)
+|++|++++| +.+.....+. .+ ++|+.|++. .+.++......+...+++|++|.+..+.+++..+..+
T Consensus 315 ~L~~L~l~~~-~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 315 KLQRLWVLDY-IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp TCCEEEEEGG-GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred CcCEEeCcCc-cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 6666666666 3333333333 34 677777762 2455655555554456777777777777776665555
Q ss_pred h-CCCCccEEEee--C----CcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc-CCCCcEEEcC
Q 016686 163 S-MMPSLKFIDIS--N----TDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST-FKELIHLSLR 234 (384)
Q Consensus 163 ~-~~~~L~~L~l~--~----n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~L~ 234 (384)
. .+++|+.|+++ + +.+++..... .+. ..+..+++|+.|++++ .+++..+..+.. +++|++|+++
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~--~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-----GFG--AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHH-----HHH--HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhh-----HHH--HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeecc
Confidence 4 47778888877 3 3444211100 000 0245678889999877 677666566654 8889999999
Q ss_pred CCCCChhhHHhc-cCCCCCCEEEccCCccCccccc-cccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCcee
Q 016686 235 NASLTDVSLHQL-SSLSKLTNLSIRDAVLTNSGLG-SFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEV 304 (384)
Q Consensus 235 ~n~i~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~ 304 (384)
+|.+++..+..+ ..+++|++|++++|.+++.++. ....+++|++|++++|++ +..++..+...+|.+.+
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNV 535 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEE
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEE
Confidence 999888766666 6689999999999998766554 334468999999999998 78888888888888764
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=1.9e-22 Score=198.57 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCCCcEEEccCC-CCCC--C----CCCCCCcEEEccCCCchh-----HHhhCcCCCCccEEeccCCC--CCchhHHhhhc
Q 016686 2 FPRLSFLNLAWT-GVTK--L----PNISSLECLNLSNCTIDS-----ILEGNENKAPLAKISLAGTT--FINEREAFLYI 67 (384)
Q Consensus 2 l~~L~~L~l~~n-~i~~--l----~~~~~L~~L~ls~n~i~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~ 67 (384)
+++|++|++++| .++. + ..+++|++|++++|.++. ++.....+++|++|++++|. ++.........
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 689999999998 4543 2 278999999999998763 33333378999999999986 33211111134
Q ss_pred CCCCccEEEeecC
Q 016686 68 ETSLLSFLDVSNS 80 (384)
Q Consensus 68 ~l~~L~~L~ls~n 80 (384)
++++|++|++++|
T Consensus 209 ~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 209 RCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECCTT
T ss_pred hCCCCcEEecCCC
Confidence 6799999999988
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.8e-22 Score=178.85 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=153.6
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 99 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L 99 (384)
.+++|++|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|++|++++|.+...+.+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence 5678888888888888775 56678888888888888887765 4588888888888888888877888888888888
Q ss_pred eCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC
Q 016686 100 SSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK 179 (384)
Q Consensus 100 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~ 179 (384)
++|.+++.. .+..+ ++|+.|++++|.+++..+ ++.+++|++|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 115 ~~n~l~~~~--~l~~l-~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 115 TSTQITDVT--PLAGL-SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp TTSCCCCCG--GGTTC-TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCch--hhcCC-CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 888887543 26666 888888888888876544 3568888999998888876543 778888999999988887
Q ss_pred cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCCh
Q 016686 180 GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTD 240 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~ 240 (384)
+.. .+..+++|+.|++++|.+++.. .+..+++|++|++++|.+++
T Consensus 187 ~~~--------------~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DIS--------------PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCG--------------GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCh--------------hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 653 2567788999999999888764 37788889999998888765
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.5e-22 Score=179.54 Aligned_cols=195 Identities=22% Similarity=0.379 Sum_probs=166.6
Q ss_pred CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEE
Q 016686 43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNL 122 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 122 (384)
.+++|++|++++|.++.++ . +..+++|++|++++|.+..++.+..+++|++|++++|.+.+. ..+..+ ++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l-~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-G--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGL-QSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-T--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTC-TTCCEE
T ss_pred HcCCcCEEEeeCCCccCch-h--hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCC-CCCCEE
Confidence 5688999999999998875 2 458899999999999999886699999999999999999864 357777 899999
Q ss_pred EccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC
Q 016686 123 NLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 202 (384)
Q Consensus 123 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (384)
++++|.+++... ++.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..++
T Consensus 113 ~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------------~l~~l~ 173 (308)
T 1h6u_A 113 DLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--------------PLANLS 173 (308)
T ss_dssp ECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------------GGTTCT
T ss_pred ECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh--------------hhcCCC
Confidence 999999987543 4678999999999999986644 888999999999999988652 366889
Q ss_pred CCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686 203 HLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 266 (384)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 266 (384)
+|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++..
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 99999999999988644 788999999999999999865 3889999999999999997743
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=183.67 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=168.3
Q ss_pred CCCCccEEeccCCCCCch--hHHhhhcCCCCccEEEeecCCCCCc--ccc--cCCCCccEEEeeCCCCCchhH----HHH
Q 016686 43 NKAPLAKISLAGTTFINE--REAFLYIETSLLSFLDVSNSSLSRF--CFL--TQMKALEHLDLSSSMIGDDSV----EMV 112 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~--~~~--~~~~~L~~L~L~~n~l~~~~~----~~~ 112 (384)
....++.+.+.++.++.. .....+..+++|++|++++|.+.+. ..+ ..+++|++|++++|.+++..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 445678888888887642 2222223457799999999988765 334 778899999999998886432 233
Q ss_pred HhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHH--H--HhhhCCCCccEEEeeCCcCCcchhhcccc
Q 016686 113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYA--I--SYMSMMPSLKFIDISNTDIKGFIQQVGAE 188 (384)
Q Consensus 113 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 188 (384)
..+ ++|+.|++++|.+.+..+..+ +.+++|++|++++|++.+.. + ..+..+++|++|++++|.++......
T Consensus 142 ~~~-~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--- 216 (310)
T 4glp_A 142 WLK-PGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC--- 216 (310)
T ss_dssp TBC-SCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH---
T ss_pred hhc-cCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH---
Confidence 445 899999999999876655544 57889999999999876532 1 12357888999999999987542210
Q ss_pred hhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC---CCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686 189 TDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF---KELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 189 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
...+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++. +|..+. ++|++|++++|++++.
T Consensus 217 ------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 217 ------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp ------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC
T ss_pred ------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC
Confidence 0024677899999999999998767666665 689999999999985 455554 7999999999999874
Q ss_pred ccccccCCCCCCEEEccCCcCC
Q 016686 266 GLGSFKPPRSLKLLDLHGGWLL 287 (384)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~n~~~ 287 (384)
+ .+..+++|+.|++++|++.
T Consensus 288 -~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 288 -P-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -C-CTTSCCCCSCEECSSTTTS
T ss_pred -c-hhhhCCCccEEECcCCCCC
Confidence 2 2567789999999999873
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=177.48 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=166.7
Q ss_pred CCcEEEccCCCchh--HHhh--CcCCCCccEEeccCCCCCchhHHhhh-cCCCCccEEEeecCCCCCc------ccccCC
Q 016686 23 SLECLNLSNCTIDS--ILEG--NENKAPLAKISLAGTTFINEREAFLY-IETSLLSFLDVSNSSLSRF------CFLTQM 91 (384)
Q Consensus 23 ~L~~L~ls~n~i~~--~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~------~~~~~~ 91 (384)
.++.+.+.++.+.. +... ...+++|++|++++|.+++..+...+ ..+++|++|++++|.+... ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 57888888887752 2211 11456799999999988865543212 6788999999999988763 233468
Q ss_pred CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHH---HHHHhCCCCCCEEeccCCCCChHH--HH-hhhCC
Q 016686 92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGV---GILAGHLPNLEILSLSGTQIDDYA--IS-YMSMM 165 (384)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~~--~~-~l~~~ 165 (384)
++|++|++++|.+.+..+..+..+ ++|+.|++++|++.+... ..+.+.+++|++|++++|.++... +. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAF-PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCC-TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccC-CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 899999999999987777777777 899999999998765322 122246788999999999987332 22 34678
Q ss_pred CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCC---CCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh
Q 016686 166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNL---NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS 242 (384)
Q Consensus 166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~ 242 (384)
++|++|++++|.+.+..|. .+..+ ++|++|++++|.++. +|..+. ++|++|++++|++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~------------~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNP------------SAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp CCCSSEECTTSCCCCCCCS------------CCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-
T ss_pred CCCCEEECCCCCCCccchh------------hHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-
Confidence 8999999999999887554 34444 689999999999885 455543 7899999999999874
Q ss_pred HHhccCCCCCCEEEccCCccCcc
Q 016686 243 LHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 243 ~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
| .+..+++|+.|++++|++++.
T Consensus 288 ~-~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 288 P-QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp C-CTTSCCCCSCEECSSTTTSCC
T ss_pred c-hhhhCCCccEEECcCCCCCCC
Confidence 2 257789999999999998763
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.5e-21 Score=169.59 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=89.7
Q ss_pred CccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC-CCCcc--cccCCCCccEEEeeC-CCCCchhHHHHHhccCCccE
Q 016686 46 PLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS-LSRFC--FLTQMKALEHLDLSS-SMIGDDSVEMVACVGANLRN 121 (384)
Q Consensus 46 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~-l~~~~--~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~ 121 (384)
+|++|++++|.++.+++. .|.++++|++|++++|. ++.++ .+..+++|++|++++ |.++...+..+..+ ++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l-~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL-PLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC-TTCCE
T ss_pred cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC-CCCCE
Confidence 455555555555554432 23455555555555554 44442 344455555555554 44443333333333 44444
Q ss_pred EEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCC-cCCcchhhcccchhhhhhHHhhcC
Q 016686 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNT-DIKGFIQQVGAETDLVLSLTALQN 200 (384)
Q Consensus 122 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~~ 200 (384)
|++++|.+++. +. ++.+++|+ .|+.|++++| .+.+..+. .+..
T Consensus 110 L~l~~n~l~~l-p~--~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~------------~~~~ 153 (239)
T 2xwt_C 110 LGIFNTGLKMF-PD--LTKVYSTD---------------------IFFILEITDNPYMTSIPVN------------AFQG 153 (239)
T ss_dssp EEEEEECCCSC-CC--CTTCCBCC---------------------SEEEEEEESCTTCCEECTT------------TTTT
T ss_pred EeCCCCCCccc-cc--cccccccc---------------------cccEEECCCCcchhhcCcc------------cccc
Confidence 44444443321 10 11222222 0114444444 44433333 3444
Q ss_pred CCCCC-EEEccCCCCCcccccccccCCCCcEEEcCCCC-CChhhHHhccCC-CCCCEEEccCCccCccccccccCCCCCC
Q 016686 201 LNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNAS-LTDVSLHQLSSL-SKLTNLSIRDAVLTNSGLGSFKPPRSLK 277 (384)
Q Consensus 201 ~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 277 (384)
+++|+ .|++++|.++...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~ 229 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLK 229 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCS
T ss_pred hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCc
Confidence 45555 5555555555332222222 455555555553 555444455555 5566666666655543222 345566
Q ss_pred EEEccCC
Q 016686 278 LLDLHGG 284 (384)
Q Consensus 278 ~L~l~~n 284 (384)
.|+++++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 6665554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=6.1e-21 Score=167.00 Aligned_cols=160 Identities=19% Similarity=0.287 Sum_probs=117.9
Q ss_pred CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196 (384)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 196 (384)
+.++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 101 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG------------ 101 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------
T ss_pred CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh------------
Confidence 345555555555554433333 4466677777776666665555666777778888887777766655
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 276 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 276 (384)
.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 56777888888888888887666667788888888888888887777678888888888888888888777778888888
Q ss_pred CEEEccCCcCCCH
Q 016686 277 KLLDLHGGWLLTE 289 (384)
Q Consensus 277 ~~L~l~~n~~~~~ 289 (384)
+.|++++|++.+.
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 9999998888554
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.7e-21 Score=169.24 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=139.5
Q ss_pred CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-CCchHHHHHHhCCCCCCEEeccC-CCCChHHHHhhhCCCCcc
Q 016686 92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-FSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLK 169 (384)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~~~~L~ 169 (384)
+++++|++++|.+++..+..+..+ ++|+.|++++|. ++...+..+ +.+++|++|++++ |.++...+..|..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 356666666666665544455555 677777777775 554433333 5678888888887 888766666778888999
Q ss_pred EEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCC---EEEccCC-CCCcccccccccCCCCc-EEEcCCCCCChhhHH
Q 016686 170 FIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLE---RLNLEQT-QVSDATLFPLSTFKELI-HLSLRNASLTDVSLH 244 (384)
Q Consensus 170 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~ 244 (384)
+|++++|.+++. |. +..+++|+ .|++++| .+++..+..+..+++|+ +|++++|+++...+.
T Consensus 109 ~L~l~~n~l~~l-p~-------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 109 FLGIFNTGLKMF-PD-------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp EEEEEEECCCSC-CC-------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred EEeCCCCCCccc-cc-------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 999999988764 22 55667777 9999999 99998777899999999 999999999975555
Q ss_pred hccCCCCCCEEEccCCc-cCccccccccCC-CCCCEEEccCCcCCC
Q 016686 245 QLSSLSKLTNLSIRDAV-LTNSGLGSFKPP-RSLKLLDLHGGWLLT 288 (384)
Q Consensus 245 ~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~ 288 (384)
.+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++.+
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 5555 899999999995 998777888999 999999999999844
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2e-20 Score=163.70 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=105.4
Q ss_pred CccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEE
Q 016686 93 ALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFID 172 (384)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 172 (384)
.++.|++++|.+.+..+..+..+ ++|+.|++++|.+++..+..+ +.+++|++|++++|.+++..+..+..+++|++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGL-TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEccCCCcCccCHhHhcCc-ccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 44555555555544444444444 555555555555554333322 3456666666666666655555566777777777
Q ss_pred eeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCC
Q 016686 173 ISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKL 252 (384)
Q Consensus 173 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L 252 (384)
+++|.+++..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus 114 L~~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 114 LGGNQLKSLPSG------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCCCcCCCcChh------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 777777766555 46677788888888888877666667778888888888888887776677788888
Q ss_pred CEEEccCCccCcc
Q 016686 253 TNLSIRDAVLTNS 265 (384)
Q Consensus 253 ~~L~l~~n~l~~~ 265 (384)
++|++++|++...
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 8888888887653
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=2.2e-19 Score=160.58 Aligned_cols=184 Identities=23% Similarity=0.338 Sum_probs=140.4
Q ss_pred EccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc
Q 016686 9 NLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF 85 (384)
Q Consensus 9 ~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 85 (384)
++..+.++++ ..+++|++|++++|.+..++ .+..+++|++|++++|.++++++ +.++++|++|++++|.+..+
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC
Confidence 3444444442 35678888888888888774 35678888888888888887765 45888888888888888888
Q ss_pred ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCC
Q 016686 86 CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMM 165 (384)
Q Consensus 86 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~ 165 (384)
+.+..+++|++|++++|.+++. ..+..+ ++|+.|++++|.+++. .. ++.+++|++|++++|.+++..+ +..+
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TV-LSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC--GGGGGC-TTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred hhhccCCCCCEEECCCCcCCCC--hhhcCC-CCCCEEEccCCcCCcc--hh-hccCCCCCEEEccCCccccchh--hcCC
Confidence 7788888888888888888753 356666 8888888888888765 22 3568888888888888876654 7788
Q ss_pred CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc
Q 016686 166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT 218 (384)
Q Consensus 166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 218 (384)
++|+.|++++|.+++. + .+..+++|+.|++++|.++...
T Consensus 178 ~~L~~L~L~~N~i~~l-~-------------~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 178 TKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp TTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEEEEEEEEECCC
T ss_pred CccCEEECCCCcCCCC-h-------------hhccCCCCCEEECcCCcccCCc
Confidence 8888888888888764 2 4677888888888888877643
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-19 Score=153.26 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=145.8
Q ss_pred ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 198 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 198 (384)
-+.++++++.++.... +..+++++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+
T Consensus 9 ~~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~ 72 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG------------VF 72 (208)
T ss_dssp TTEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------TT
T ss_pred CCEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh------------hc
Confidence 4566777776653321 2346788999998888876666678889999999999998877665 57
Q ss_pred cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCE
Q 016686 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 278 (384)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 278 (384)
..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 88899999999999999877777888999999999999999877777889999999999999999877777888899999
Q ss_pred EEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCccccCCCCCCchhhhhh
Q 016686 279 LDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQIGSNGPSPSRTSLRAS 332 (384)
Q Consensus 279 L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~n~~~~~~p~~~~~~~~ 332 (384)
|++++|.+.+ .++.++ .++++.|.++|.+|++++.++.
T Consensus 153 L~l~~N~~~~---------~~~~l~-------~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 153 IWLHDNPWDC---------TCPGIR-------YLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EECCSCCBCC---------CTTTTH-------HHHHHHHHCTTTBBCTTSSBCT
T ss_pred EEecCCCeec---------CCCCHH-------HHHHHHHhCCceeeccCccccC
Confidence 9999998743 344454 5667778888888888876653
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.2e-19 Score=166.61 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=112.5
Q ss_pred cEEEccCCCCCCCCC-C-CCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccE-EEeecCC
Q 016686 6 SFLNLAWTGVTKLPN-I-SSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSF-LDVSNSS 81 (384)
Q Consensus 6 ~~L~l~~n~i~~l~~-~-~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~ls~n~ 81 (384)
++++.++++++.+|. + +++++|++++|+|+.+|+..+ .+++|++|++++|.+.+..+.-.|.+++++++ +.+..|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 445555555665552 2 356666666666666555433 56666666666665543222223445555443 3344455
Q ss_pred CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH
Q 016686 82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI 159 (384)
Q Consensus 82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 159 (384)
+..+ ..+..+++|++|++++|.+....+..+... ..+..+++.++ +.+....+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~------------------------~~i~~l~~ 146 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDN------------------------INIHTIER 146 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESC------------------------TTCCEECT
T ss_pred ccccCchhhhhccccccccccccccccCCchhhccc-chhhhhhhccc------------------------cccccccc
Confidence 5554 245555566666666655553322222222 33444444332 22332222
Q ss_pred HhhhCCC-CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccC-CCCCcccccccccCCCCcEEEcCCCC
Q 016686 160 SYMSMMP-SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNAS 237 (384)
Q Consensus 160 ~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~ 237 (384)
..|..+. .++.|++++|.++...+. .+ ...+++.+++.+ |.++.+.+..+..+++|++|++++|+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~------------~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNS------------AF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTT------------SS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cchhhcchhhhhhccccccccCCChh------------hc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 2233322 355555555555543333 12 223455555543 44444444445555666666666666
Q ss_pred CChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCC
Q 016686 238 LTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 284 (384)
Q Consensus 238 i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (384)
++...+.. +.+|++|.+.++.--...| .+..+++|+.+++.++
T Consensus 214 l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 214 IHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 65543322 3344444444432212222 2455566777776543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=7e-19 Score=157.24 Aligned_cols=190 Identities=23% Similarity=0.274 Sum_probs=129.1
Q ss_pred cEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCC
Q 016686 48 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNT 127 (384)
Q Consensus 48 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n 127 (384)
..+.+..+.+++... +..+++|+.|++++|.+..++.+..+++|++|++++|.+++..+ +..+ ++|+.|++++|
T Consensus 27 ~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l-~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSS
T ss_pred HHHHhcCCCcccccc---hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccC-CCCCEEECCCC
Confidence 334444555544321 22456777777777777766667777777777777777765433 5566 77777777777
Q ss_pred CCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEE
Q 016686 128 RFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERL 207 (384)
Q Consensus 128 ~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 207 (384)
.+++... ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+++. . .+..+++|+.|
T Consensus 101 ~l~~~~~---l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~------------~l~~l~~L~~L 161 (291)
T 1h6t_A 101 KVKDLSS---LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDTL 161 (291)
T ss_dssp CCCCGGG---GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G------------GGGGCTTCSEE
T ss_pred cCCCChh---hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h------------hhccCCCCCEE
Confidence 7765322 35677777777777777654 3566777788888887777665 2 46677788888
Q ss_pred EccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686 208 NLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 266 (384)
Q Consensus 208 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 266 (384)
++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|+++...
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCc
Confidence 888888777544 677788888888888877642 4777788888888888776643
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.1e-19 Score=165.02 Aligned_cols=216 Identities=14% Similarity=0.099 Sum_probs=145.8
Q ss_pred cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc---ccccCCCCccE-EEee
Q 016686 25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF---CFLTQMKALEH-LDLS 100 (384)
Q Consensus 25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~~L~~-L~L~ 100 (384)
++++.++++++++|..+. +++++|++++|.++.+++. .|.++++|++|++++|.+... ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567778888888887664 5788888888888877764 366788888888888876543 34566666554 4455
Q ss_pred CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeC-CcCC
Q 016686 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISN-TDIK 179 (384)
Q Consensus 101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~-n~l~ 179 (384)
+|++....+..+.. +++|++|++++|.+....+..+.....+..+++.+ +.+.
T Consensus 89 ~N~l~~l~~~~f~~--------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 89 ANNLLYINPEAFQN--------------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp ETTCCEECTTSBCC--------------------------CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred CCcccccCchhhhh--------------------------ccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 56665444443444 44555555555544433323333455677788866 4565
Q ss_pred cchhhcccchhhhhhHHhhcCC-CCCCEEEccCCCCCcccccccccCCCCcEEEcCC-CCCChhhHHhccCCCCCCEEEc
Q 016686 180 GFIQQVGAETDLVLSLTALQNL-NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRN-ASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~~~L~~L~l 257 (384)
...+. .+..+ ..++.|++++|.++.+.+.. ....+|+++++.+ |.++...+..|..+++|++|++
T Consensus 143 ~l~~~------------~f~~~~~~l~~L~L~~N~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 143 TIERN------------SFVGLSFESVILWLNKNGIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp EECTT------------SSTTSBSSCEEEECCSSCCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred ccccc------------chhhcchhhhhhccccccccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 55444 45554 46889999999999865444 4567899999975 6788776778899999999999
Q ss_pred cCCccCccccccccCCCCCCEEEccCCc
Q 016686 258 RDAVLTNSGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 258 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (384)
++|+++...+..+ .+|+.|.+.++.
T Consensus 210 s~N~l~~lp~~~~---~~L~~L~~l~~~ 234 (350)
T 4ay9_X 210 SRTRIHSLPSYGL---ENLKKLRARSTY 234 (350)
T ss_dssp TTSCCCCCCSSSC---TTCCEEECTTCT
T ss_pred CCCCcCccChhhh---ccchHhhhccCC
Confidence 9999998655444 556666665553
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.3e-19 Score=177.28 Aligned_cols=184 Identities=23% Similarity=0.330 Sum_probs=137.9
Q ss_pred EEccCCCCCCC---CCCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCC
Q 016686 8 LNLAWTGVTKL---PNISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSR 84 (384)
Q Consensus 8 L~l~~n~i~~l---~~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 84 (384)
++++.+.+..+ ..+++|+.|++++|.+..++ .+..+++|++|+|++|.++++++ +..+++|+.|+|++|.+..
T Consensus 26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred HhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCC
Confidence 34455555542 25677888888888887765 46678888888888888887765 4578888888888888887
Q ss_pred cccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhC
Q 016686 85 FCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSM 164 (384)
Q Consensus 85 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 164 (384)
++.+..+++|+.|++++|.+.+. ..+..+ ++|+.|++++|.+++. . .++.+++|+.|++++|.+.+..+ +..
T Consensus 102 l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 LSSLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp CTTSTTCTTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--G-GGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred ChhhccCCCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--h-hhcccCCCCEEECcCCcCCCchh--hcc
Confidence 77788888888888888888753 346666 8888888888888765 2 23567888888888888876655 778
Q ss_pred CCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcc
Q 016686 165 MPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDA 217 (384)
Q Consensus 165 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 217 (384)
+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+.
T Consensus 174 l~~L~~L~Ls~N~i~~l-~-------------~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCC-h-------------HHccCCCCCEEEccCCcCcCC
Confidence 88888888888888764 2 467788888888888877664
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=7.2e-19 Score=171.97 Aligned_cols=192 Identities=22% Similarity=0.272 Sum_probs=125.4
Q ss_pred ccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccC
Q 016686 47 LAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSN 126 (384)
Q Consensus 47 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~ 126 (384)
+..+.+..+.+..+.. +..++.|+.|++++|.+..++.+..+++|+.|+|++|.+.+..+ +..+ ++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCS
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcC
Confidence 3344444444444322 22456666666666666666666666666677776666665433 5555 6677777777
Q ss_pred CCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCE
Q 016686 127 TRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLER 206 (384)
Q Consensus 127 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 206 (384)
|.+.+.. . ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. . .+..+++|+.
T Consensus 97 N~l~~l~--~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~------------~l~~l~~L~~ 157 (605)
T 1m9s_A 97 NKIKDLS--S-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T------------VLSRLTKLDT 157 (605)
T ss_dssp SCCCCCT--T-STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G------------GGGSCTTCSE
T ss_pred CCCCCCh--h-hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h------------hhcccCCCCE
Confidence 7665432 2 24567777777777777653 3466777777777777777665 2 4667777888
Q ss_pred EEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccc
Q 016686 207 LNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGL 267 (384)
Q Consensus 207 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 267 (384)
|++++|.+++..+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|++.+...
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 8888887777544 67777888888888877764 357777888888888887766433
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.9e-18 Score=165.97 Aligned_cols=194 Identities=17% Similarity=0.213 Sum_probs=129.7
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCC
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSS 102 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n 102 (384)
+++.|++++|.++++|..++ ++|++|++++|.++.++ . .+++|++|++++|.++.++.+.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~----~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E----LPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C----CCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c----ccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 67777887777777776554 67788888887777665 1 45777888888887777654333 7788888888
Q ss_pred CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcch
Q 016686 103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFI 182 (384)
Q Consensus 103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 182 (384)
.+++ +|. .+ ++|+.|++++|.+++. +. .+++|++|++++|.+++. |. +. ++|+.|++++|.++...
T Consensus 131 ~l~~-lp~---~l-~~L~~L~Ls~N~l~~l-p~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 131 QLTM-LPE---LP-ALLEYINADNNQLTML-PE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CCSC-CCC---CC-TTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSCC
T ss_pred cCCC-CCC---cC-ccccEEeCCCCccCcC-CC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCchh
Confidence 7775 333 34 7788888888877652 21 356788888888877753 33 43 67888888888777442
Q ss_pred hhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCC
Q 016686 183 QQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSL 249 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 249 (384)
. . .. .-....+.|+.|++++|.++. +|..+..+++|+.|++++|.+++..|..+..+
T Consensus 197 ~-~-~~-------~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-V-PV-------RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-C-C---------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-H-HH-------hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 2 1 00 001112334888888888886 45666678888888888888888777776543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=5.2e-19 Score=163.12 Aligned_cols=185 Identities=19% Similarity=0.225 Sum_probs=135.4
Q ss_pred cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686 95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174 (384)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 174 (384)
+.++++++.++. +|..+ ...++.|++++|.+++..+..+...+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 455666665552 33221 14566677777776654443332257788888888888877666677788888888888
Q ss_pred CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc---cCCCC
Q 016686 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL---SSLSK 251 (384)
Q Consensus 175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l---~~~~~ 251 (384)
+|.+....+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++
T Consensus 97 ~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 97 SNHLHTLDEF------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp SSCCCEECTT------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCcCCcCCHH------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 8888777665 57788889999999998888777788888899999999998888665555 56889
Q ss_pred CCEEEccCCccCccccccccCCCC--CCEEEccCCcCCCHHHHHHH
Q 016686 252 LTNLSIRDAVLTNSGLGSFKPPRS--LKLLDLHGGWLLTEDAILQF 295 (384)
Q Consensus 252 L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~ 295 (384)
|+.|++++|+++...+..+..++. ++.|++++|++.+++....+
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 999999999998876666666665 48899999999887765543
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-18 Score=147.01 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=66.0
Q ss_pred CCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686 140 HLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 219 (384)
Q Consensus 140 ~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 219 (384)
.+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG------------VFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh------------HhccCCcCCEEECCCCccceeCH
Confidence 345555555555555444333445556666666666666554444 35556666666666666665554
Q ss_pred cccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686 220 FPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 273 (384)
Q Consensus 220 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 273 (384)
..+..+++|++|++++|.+. +.+++|+.|+++.|.+++..|..++.+
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred HHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 44556666666666666443 234566666666666666666555444
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=5.3e-18 Score=145.13 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=133.3
Q ss_pred ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 198 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 198 (384)
-+.++++++.++.. |.. -.+++++|++++|.+++..+..|..+++|+.|++++|.+.+..+. .+
T Consensus 13 ~~~v~c~~~~l~~i-P~~---l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~------------~~ 76 (220)
T 2v9t_B 13 NNIVDCRGKGLTEI-PTN---LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD------------AF 76 (220)
T ss_dssp TTEEECTTSCCSSC-CSS---CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT------------TT
T ss_pred CCEEEcCCCCcCcC-CCc---cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH------------Hh
Confidence 35677777776643 221 135788888988888877666788889999999999999887777 68
Q ss_pred cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCE
Q 016686 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKL 278 (384)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 278 (384)
..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 88999999999999999877667788999999999999999988888999999999999999999988778888999999
Q ss_pred EEccCCcCCCHHHHHHH
Q 016686 279 LDLHGGWLLTEDAILQF 295 (384)
Q Consensus 279 L~l~~n~~~~~~~~~~~ 295 (384)
|++++|++.+++.+..+
T Consensus 157 L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 157 MHLAQNPFICDCHLKWL 173 (220)
T ss_dssp EECCSSCEECSGGGHHH
T ss_pred EEeCCCCcCCCCccHHH
Confidence 99999999776655444
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=4.3e-18 Score=164.84 Aligned_cols=186 Identities=19% Similarity=0.213 Sum_probs=154.1
Q ss_pred CCCcEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecC
Q 016686 3 PRLSFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNS 80 (384)
Q Consensus 3 ~~L~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n 80 (384)
.+|+.|++++|.++++|. .++|++|++++|.|+.+| ..+++|++|++++|.+++++. + .. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l--~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L--PA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C--CT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h--hc--CCCEEECCCC
Confidence 379999999999998873 578999999999999988 457999999999999999776 3 23 9999999999
Q ss_pred CCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH
Q 016686 81 SLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS 160 (384)
Q Consensus 81 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 160 (384)
.++.++. .+++|+.|++++|.+++ +|. .+ ++|+.|++++|.+++. +. + . ++|+.|++++|.++.. |.
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l-~~L~~L~Ls~N~L~~l-p~-l-~--~~L~~L~Ls~N~L~~l-p~ 197 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTM-LPE---LP-TSLEVLSVRNNQLTFL-PE-L-P--ESLEALDVSTNLLESL-PA 197 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSC-CCC---CC-TTCCEEECCSSCCSCC-CC-C-C--TTCCEEECCSSCCSSC-CC
T ss_pred cCCCCCC--cCccccEEeCCCCccCc-CCC---cC-CCcCEEECCCCCCCCc-ch-h-h--CCCCEEECcCCCCCch-hh
Confidence 9998866 78999999999999986 443 44 8999999999999873 33 3 3 8999999999999843 33
Q ss_pred hhhCCCCc-------cEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccC
Q 016686 161 YMSMMPSL-------KFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTF 225 (384)
Q Consensus 161 ~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 225 (384)
+.. +| +.|++++|.++.. |. .+..+++|+.|++++|.+++..|..+..+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~------------~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHI-PE------------NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCC-CG------------GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceec-CH------------HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 433 67 9999999999865 44 35569999999999999999888777654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=144.60 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=126.4
Q ss_pred ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH-HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI-SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 197 (384)
-+.+++++|.++.. |.. -.+.+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+. .
T Consensus 13 ~~~l~~s~n~l~~i-P~~---~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------~ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-PEH---IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG------------A 76 (220)
T ss_dssp TTEEECCSSCCSSC-CSC---CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT------------T
T ss_pred CCEeEeCCCCcccC-ccC---CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH------------H
Confidence 45677777776642 221 13456788888887775533 3467788888888888888877666 5
Q ss_pred hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCC
Q 016686 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 277 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 277 (384)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 78888899999999998888777788889999999999999888888888899999999999999988788888889999
Q ss_pred EEEccCCcCCCHHHHHHH
Q 016686 278 LLDLHGGWLLTEDAILQF 295 (384)
Q Consensus 278 ~L~l~~n~~~~~~~~~~~ 295 (384)
.|++++|++.+.+.+..+
T Consensus 157 ~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 157 TLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp EEECCSCCEECSGGGHHH
T ss_pred EEEecCcCCcCCCchHHH
Confidence 999999998766554433
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=139.53 Aligned_cols=151 Identities=17% Similarity=0.280 Sum_probs=78.0
Q ss_pred CCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEE
Q 016686 44 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLN 123 (384)
Q Consensus 44 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 123 (384)
+++|++|++++|.++.++ . +..+++|++|++++|.+...+.+..+++|++|++++|.+++..+..+..+ ++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~l~-~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-G--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL-TSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-T--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-TTCCEEE
T ss_pred cCCccEEeccCCCccChH-H--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCC-CCCCEEE
Confidence 345555555555555444 1 23455555555555555444555555555555555555554444445555 5555555
Q ss_pred ccCCCCCchHHHHHHhCCCCCCEEeccCCC-CChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCC
Q 016686 124 LSNTRFSSAGVGILAGHLPNLEILSLSGTQ-IDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLN 202 (384)
Q Consensus 124 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 202 (384)
+++|.+++..+..+ +.+++|++|++++|. +++. + .+..+++|+.|++++|.+.+.. .+..++
T Consensus 119 Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--------------~l~~l~ 181 (197)
T 4ezg_A 119 ISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--------------GIEDFP 181 (197)
T ss_dssp CCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--------------TGGGCS
T ss_pred ecCCccCcHhHHHH-hhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--------------HhccCC
Confidence 55555554444433 345555555555555 4433 1 3555556666666666555432 244555
Q ss_pred CCCEEEccCCCCC
Q 016686 203 HLERLNLEQTQVS 215 (384)
Q Consensus 203 ~L~~L~l~~n~l~ 215 (384)
+|+.|++++|++.
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 6666666666554
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-18 Score=152.37 Aligned_cols=163 Identities=22% Similarity=0.312 Sum_probs=92.0
Q ss_pred CcEEEccCCCCCCCC---CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 5 LSFLNLAWTGVTKLP---NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 5 L~~L~l~~n~i~~l~---~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
+..++++++.+++++ .+++|++|++++|.++.++ .+..+++|++|++++|.++++++ +..+++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc
Confidence 344455556555433 4556666666666666655 44566666666666666666554 3366666666666666
Q ss_pred CCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHh
Q 016686 82 LSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISY 161 (384)
Q Consensus 82 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 161 (384)
+..++.+.. ++|++|++++|.+++. ..+..+ ++|+.|++++|++++.. . ++.+++|++|++++|.+++. ..
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l-~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHL-KNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTC-TTCCEEECTTSCCCBCG--G-GGGCTTCCEEECTTSCCCBC--TT
T ss_pred cCCcCcccc-CcccEEEccCCccCCC--hhhcCc-ccccEEECCCCcCCCCh--H-HccCCCCCEEECCCCcCcch--HH
Confidence 666544444 6666666666666542 234444 56666666666655432 1 23455555555555555544 34
Q ss_pred hhCCCCccEEEeeCCcCCc
Q 016686 162 MSMMPSLKFIDISNTDIKG 180 (384)
Q Consensus 162 l~~~~~L~~L~l~~n~l~~ 180 (384)
+..+++|+.|++++|.+..
T Consensus 168 l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp STTCCCCCEEEEEEEEEEC
T ss_pred hccCCCCCEEeCCCCcccC
Confidence 4455555555555555443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=145.61 Aligned_cols=155 Identities=17% Similarity=0.231 Sum_probs=117.1
Q ss_pred cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686 95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174 (384)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 174 (384)
+.+++++|.++. +|..+ ...++.|++++|.+++..+...++.+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 356666665553 33222 14566777777776654333333567788888888888877666678888888888888
Q ss_pred CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 254 (384)
Q Consensus 175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~ 254 (384)
+|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++
T Consensus 90 ~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 90 SNRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SSCCCCCCGG------------GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCccCccCHh------------HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 8888877766 6788888999999999988887888888889999999999998887888888999999
Q ss_pred EEccCCccCcc
Q 016686 255 LSIRDAVLTNS 265 (384)
Q Consensus 255 L~l~~n~l~~~ 265 (384)
|++++|++...
T Consensus 158 L~L~~N~l~c~ 168 (220)
T 2v70_A 158 LNLLANPFNCN 168 (220)
T ss_dssp EECCSCCEECS
T ss_pred EEecCcCCcCC
Confidence 99999988753
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=140.10 Aligned_cols=152 Identities=18% Similarity=0.323 Sum_probs=77.7
Q ss_pred CCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEE
Q 016686 68 ETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEIL 147 (384)
Q Consensus 68 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 147 (384)
.+++|++|++++|.+..++.+..+++|++|++++|.+... ..+..+ ++|+.|++++|.++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l-~~L~~L~l~~n~l~----------------- 101 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--NPISGL-SNLERLRIMGKDVT----------------- 101 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--GGGTTC-TTCCEEEEECTTCB-----------------
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--hhhhcC-CCCCEEEeECCccC-----------------
Confidence 4456666666666666555566666666666666654421 233344 45555555555444
Q ss_pred eccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC-CCcccccccccCC
Q 016686 148 SLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ-VSDATLFPLSTFK 226 (384)
Q Consensus 148 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~ 226 (384)
+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +++. + .+..++
T Consensus 102 --------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~------------~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~ 159 (197)
T 4ezg_A 102 --------SDKIPNLSGLTSLTLLDISHSAHDDSILT------------KINTLPKVNSIDLSYNGAITDI-M-PLKTLP 159 (197)
T ss_dssp --------GGGSCCCTTCTTCCEEECCSSBCBGGGHH------------HHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred --------cccChhhcCCCCCCEEEecCCccCcHhHH------------HHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence 43334444445555555555555443333 34455555555555554 4332 2 345555
Q ss_pred CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccC
Q 016686 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLT 263 (384)
Q Consensus 227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~ 263 (384)
+|++|++++|.+++.. .+..+++|++|++++|++.
T Consensus 160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 5555555555555422 4455566666666666554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=9.5e-18 Score=154.64 Aligned_cols=172 Identities=20% Similarity=0.287 Sum_probs=134.5
Q ss_pred cEEEccCCCCCCCCC--CCCCcEEEccCCCchhHHhhCc--CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCC
Q 016686 6 SFLNLAWTGVTKLPN--ISSLECLNLSNCTIDSILEGNE--NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSS 81 (384)
Q Consensus 6 ~~L~l~~n~i~~l~~--~~~L~~L~ls~n~i~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~ 81 (384)
+.+++++++++.+|. .+.+++|++++|.|++++...+ .+++|++|++++|.++.+++. .|.++++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCc
Confidence 578888888888872 3468889999999888776654 788999999999998887754 36688899999999998
Q ss_pred CCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH--hCCCCCCEEeccCCCCChH
Q 016686 82 LSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--GHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 82 l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~i~~~ 157 (384)
+..+ ..+..+++|++|++++|.+....+..+..+ ++|+.|++++|.++......+. +.+++|+.|++++|.++..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc-ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8877 357888889999999998887777778888 8899999999888764433221 3578888899988888876
Q ss_pred HHHhhhCCCC--ccEEEeeCCcCC
Q 016686 158 AISYMSMMPS--LKFIDISNTDIK 179 (384)
Q Consensus 158 ~~~~l~~~~~--L~~L~l~~n~l~ 179 (384)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 6677777776 477888888765
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.2e-17 Score=150.20 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=146.1
Q ss_pred CCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCCC----CCchhHHHHHhccC
Q 016686 44 KAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM----IGDDSVEMVACVGA 117 (384)
Q Consensus 44 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~~~~ 117 (384)
+++|++|++.+ .++.+... +|..|++|+.+++..|.+..+ ..|..+.++..+....+. .......++..+ .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~-~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG-E 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES-C
T ss_pred cCCCcEEECCc-cccchhHH-HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc-c
Confidence 77777777777 66666554 466777777777777776655 355555555555443311 110011112233 3
Q ss_pred Ccc-EEEccCCCCCchHHHHHHh---CCCCCCEEeccCCCCChHHHHhhh-CCCCccEEEeeCCcCCcchhhcccchhhh
Q 016686 118 NLR-NLNLSNTRFSSAGVGILAG---HLPNLEILSLSGTQIDDYAISYMS-MMPSLKFIDISNTDIKGFIQQVGAETDLV 192 (384)
Q Consensus 118 ~L~-~L~L~~n~l~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 192 (384)
.|+ .+.+.... ..+..+.. ...+++.+.+.++ +.......+. .+++|+.+++++|.+......
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-------- 244 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDF-------- 244 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTT--------
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHh--------
Confidence 444 34443322 12222222 2456777777654 3333333333 478999999999888876666
Q ss_pred hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCc-EEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcccccccc
Q 016686 193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELI-HLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFK 271 (384)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 271 (384)
+|..+.+|+.+++.+| ++.+...+|.+|++|+ .+.+.+ .++...+.+|.++++|+.+++++|.++......|.
T Consensus 245 ----aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 245 ----TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ----TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ----hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 7889999999999988 8877778889999999 999988 78888888999999999999999999988888999
Q ss_pred CCCCCCEEEc
Q 016686 272 PPRSLKLLDL 281 (384)
Q Consensus 272 ~~~~L~~L~l 281 (384)
.+++|+.+..
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999998753
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=9.9e-17 Score=138.11 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=127.8
Q ss_pred CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196 (384)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 196 (384)
+..+.++++++.++.. |. +-.++|++|++++|.+++..+..+..+++|++|++++|.+....+.
T Consensus 19 Cs~~~v~c~~~~l~~i-p~---~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~------------ 82 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASV-PA---GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG------------ 82 (229)
T ss_dssp EETTEEECTTSCCSSC-CS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred EeCCEeEccCCCcCcc-CC---CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh------------
Confidence 3566777777776633 22 2247888999988888877777788888999999999998776655
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 276 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 276 (384)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|+++. +|..+..+++|++|++++|++++..+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 57888999999999999988777778889999999999999985 56777889999999999999998777778888999
Q ss_pred CEEEccCCcCCCHH
Q 016686 277 KLLDLHGGWLLTED 290 (384)
Q Consensus 277 ~~L~l~~n~~~~~~ 290 (384)
+.|++++|++.+.+
T Consensus 162 ~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 162 THAYLFGNPWDCEC 175 (229)
T ss_dssp CEEECTTSCBCTTB
T ss_pred CEEEeeCCCccCCc
Confidence 99999999986543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1e-17 Score=147.44 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=48.4
Q ss_pred CCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHh
Q 016686 166 PSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQ 245 (384)
Q Consensus 166 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~ 245 (384)
++|+.|++++|.+++. + .+..+++|+.|++++|++++. ..+..+++|++|++++|.+++. ..
T Consensus 106 ~~L~~L~L~~N~l~~~-~-------------~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-D-------------SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp SSCCEEECCSSCCSBS-G-------------GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TT
T ss_pred CcccEEEccCCccCCC-h-------------hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HH
Confidence 4555555555555543 1 245556666666666666653 2455666666666666666654 45
Q ss_pred ccCCCCCCEEEccCCccCcc
Q 016686 246 LSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 246 l~~~~~L~~L~l~~n~l~~~ 265 (384)
+..+++|+.|++++|+++..
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 56666666666666666554
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=2.3e-17 Score=141.16 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=113.4
Q ss_pred cEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEee
Q 016686 95 EHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDIS 174 (384)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 174 (384)
+.++.+++.++. +|..+ .++++.|++++|.+++..+..+ +.+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 345555555542 22211 1466677777776665444333 457778888888888777667778888888888888
Q ss_pred CCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCE
Q 016686 175 NTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTN 254 (384)
Q Consensus 175 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~ 254 (384)
+|.++...+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 89 ~N~l~~l~~~------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKS------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCCccCHh------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 8888876655 5778888999999999888887788888888999999999888877777888889999
Q ss_pred EEccCCccCc
Q 016686 255 LSIRDAVLTN 264 (384)
Q Consensus 255 L~l~~n~l~~ 264 (384)
|++++|++..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 9999988754
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.9e-16 Score=136.26 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=95.4
Q ss_pred CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196 (384)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 196 (384)
++|+.|++++|.+++..+..+ +.+++|++|++++|.++...+..|..+++|+.|++++|.+++..+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~------------ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA------------ 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh------------
Confidence 456666666666655444333 4566677777777766655445566777777777777777766555
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
.+..+++|+.|++++|.++. +|..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred HhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 56777888888888888775 466677788888888888888876666777888888888888887653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.6e-19 Score=172.33 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=137.6
Q ss_pred CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCC-CCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686 43 NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSL-SRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 121 (384)
.+++|+.|++++|.++.+|..+. ++++|++|++++|.. ...+.+ +..+...+..|..+..+ ++|+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~--~l~~L~~L~l~~n~~l~~l~~l----------l~~~~~~~~~~~~l~~l-~~L~~ 413 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELE--SCKELQELEPENKWCLLTIILL----------MRALDPLLYEKETLQYF-STLKA 413 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHH--HHHHHHHHCTTCHHHHHHHHHH----------HHHHCTGGGHHHHHHHH-HHHHH
T ss_pred cCccceeccCChhhHHhhHHHHH--HHHHHHHhccccchhhhhHHHH----------HHhcccccCCHHHHHHH-Hhccc
Confidence 45566666666666655555432 555666666543321 000000 00112233445555555 55655
Q ss_pred EE-ccCCCCCch--------HHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhh
Q 016686 122 LN-LSNTRFSSA--------GVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLV 192 (384)
Q Consensus 122 L~-L~~n~l~~~--------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 192 (384)
|+ ++.|.+... ....+ ....|+.|++++|.+++. |. +..+++|+.|++++|.++. +|.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~-lp~-------- 480 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA-LPP-------- 480 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-CCG--------
T ss_pred Ccchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-cch--------
Confidence 55 343332111 11111 123689999999998864 43 8889999999999999984 455
Q ss_pred hhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCccCccccc---
Q 016686 193 LSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGLG--- 268 (384)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~--- 268 (384)
.+..+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|++++..+.
T Consensus 481 ----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 481 ----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp ----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 58889999999999999998 45 7889999999999999999876 88999999999999999999886443
Q ss_pred cccCCCCCCEEEc
Q 016686 269 SFKPPRSLKLLDL 281 (384)
Q Consensus 269 ~~~~~~~L~~L~l 281 (384)
.+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 2233688988864
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=9.7e-18 Score=162.98 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=150.6
Q ss_pred ccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC-------------CCchHHHHHHhCCCCCCEEe-ccCCC
Q 016686 88 LTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR-------------FSSAGVGILAGHLPNLEILS-LSGTQ 153 (384)
Q Consensus 88 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~l~~L~~L~-l~~n~ 153 (384)
+..+++|+.|++++|.++ .+|..+..+ ++|+.|++++|. ..+..+..+ +.+++|+.|+ ++.|.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l-~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAAY 421 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH-HHHHHHHHHCGGGHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHH-HHHHhcccCcchhhcc
Confidence 356788899999999887 678888888 889998886653 344444443 5678888888 55554
Q ss_pred CChHHHH-----hhh--CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCC
Q 016686 154 IDDYAIS-----YMS--MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFK 226 (384)
Q Consensus 154 i~~~~~~-----~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 226 (384)
+.+.... .+. ....|+.|++++|.+++. |. +..+++|+.|++++|.++. +|..++.++
T Consensus 422 ~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-------------~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~ 486 (567)
T 1dce_A 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-------------LEQLLLVTHLDLSHNRLRA-LPPALAALR 486 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-------------GGGGTTCCEEECCSSCCCC-CCGGGGGCT
T ss_pred cchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-------------ccccccCcEeecCcccccc-cchhhhcCC
Confidence 3321110 111 123699999999999874 33 6788999999999999995 678899999
Q ss_pred CCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc-cccccCCCCCCEEEccCCcCCCHH-HHHHHHHhCCCce
Q 016686 227 ELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG-LGSFKPPRSLKLLDLHGGWLLTED-AILQFCKMHPRIE 303 (384)
Q Consensus 227 ~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~~~l~ 303 (384)
+|++|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|++...+ ....+...+|+++
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 99999999999998 45 8999999999999999999976 889999999999999999984322 1233455567665
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=2e-15 Score=126.20 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=106.4
Q ss_pred CEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc
Q 016686 145 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 224 (384)
Q Consensus 145 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 224 (384)
+.+++++++++. .|..+ ...+++|++++|.+.+..+.. .+..+++|++|++++|.+++..+..+..
T Consensus 11 ~~l~~s~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~-----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDG-----------LFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSC-----------SGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CEEEcCCCCcCc-CccCC--CCCCCEEECCCCcCCccCCcc-----------ccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 567777777653 23222 237888888888887765531 3677888999999999888887888888
Q ss_pred CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHH
Q 016686 225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAIL 293 (384)
Q Consensus 225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 293 (384)
+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.....
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 889999999999998887777888899999999999999888888888899999999999886654433
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.3e-15 Score=121.81 Aligned_cols=128 Identities=23% Similarity=0.319 Sum_probs=86.6
Q ss_pred CCCCCEEeccCCCCC-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686 141 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 219 (384)
Q Consensus 141 l~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 219 (384)
.+++++|++++|.++ +..+..+..+++|+.|++++|.+.+. . .+..+++|++|++++|.+++..|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A------------NLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T------------TCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h------------hhhcCCCCCEEECCCCcccchHH
Confidence 356777777777665 34445556667777777777776655 2 46667777777777777776555
Q ss_pred cccccCCCCcEEEcCCCCCChh-hHHhccCCCCCCEEEccCCccCcccc---ccccCCCCCCEEEcc
Q 016686 220 FPLSTFKELIHLSLRNASLTDV-SLHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLH 282 (384)
Q Consensus 220 ~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~ 282 (384)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5566677777777777777764 34667777777777777777776544 356666777777765
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=7.7e-16 Score=154.13 Aligned_cols=190 Identities=16% Similarity=0.125 Sum_probs=115.3
Q ss_pred HHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCC
Q 016686 157 YAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA 236 (384)
Q Consensus 157 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n 236 (384)
..+..+..++.|+.|++++|.+....+. +..+++|++|++++|.++ .+|..++.+++|++|+|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-------------~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISAN-------------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGG-------------GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChh-------------hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 4456778889999999999998854433 457899999999999999 46788899999999999999
Q ss_pred CCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHHhCCCceeecccccccCCCc
Q 016686 237 SLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCKMHPRIEVWHELSVICPSDQ 316 (384)
Q Consensus 237 ~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 316 (384)
.|+. +|..++.+++|++|+|++|.++. .|..|..+++|+.|+|++|.+.. ..+..+........ .+.+.+
T Consensus 281 ~l~~-lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~-------~l~l~~ 350 (727)
T 4b8c_D 281 RLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGL-------IFYLRD 350 (727)
T ss_dssp CCSS-CCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHH-------HHHHHH
T ss_pred cCCc-cChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCC-CChHHHhhcchhhh-------HHhhcc
Confidence 9994 68889999999999999999985 57779999999999999999843 33333322111001 245678
Q ss_pred cccCCCCCCchhhhhhhhh----hcCCCCCCchhhHHhhhhhcHHHHHhhhcccccccCC
Q 016686 317 IGSNGPSPSRTSLRASLVK----QKQDPMPMSHSFLDQRLKYSREELLELQYSSLSLARP 372 (384)
Q Consensus 317 n~~~~~~p~~~~~~~~l~n----~l~~~ip~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 372 (384)
|.+++.+|..+..+.-..| ...|.++..... ....+.+++...+++|.+.+...
T Consensus 351 N~l~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~--~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 351 NRPEIPLPHERRFIEINTDGEPQREYDSLQQSTEH--LATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp CCCCCCCCCC-------------------------------------------CCCGGGC
T ss_pred CcccCcCccccceeEeecccccccccCCccccccc--hhhcccccceeeeeccccccccC
Confidence 8999999998877653322 222333433200 01456677888899999876554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.5e-15 Score=124.03 Aligned_cols=132 Identities=22% Similarity=0.262 Sum_probs=87.5
Q ss_pred CCCCCEEeccCCCCC-hHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccc
Q 016686 141 LPNLEILSLSGTQID-DYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATL 219 (384)
Q Consensus 141 l~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 219 (384)
.++|++|++++|.++ +..+..+..+++|+.|++++|.+.+. . .+..+++|++|++++|.+++..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~------------~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S------------NLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S------------SCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h------------hhccCCCCCEEECcCCcCchHHH
Confidence 356777777777665 34444556667777777777776654 2 46667777777777777776555
Q ss_pred cccccCCCCcEEEcCCCCCChhh-HHhccCCCCCCEEEccCCccCcccc---ccccCCCCCCEEEccCCcC
Q 016686 220 FPLSTFKELIHLSLRNASLTDVS-LHQLSSLSKLTNLSIRDAVLTNSGL---GSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 220 ~~l~~~~~L~~L~L~~n~i~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~~ 286 (384)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55556777777777777776642 2566677777777777777776544 3566667777777777765
No 124
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=138.18 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=95.5
Q ss_pred CCccEEEeeCCCCCchhHHHHHhcc----CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhh----
Q 016686 92 KALEHLDLSSSMIGDDSVEMVACVG----ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMS---- 163 (384)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~---- 163 (384)
+.|+.|++++|.++......+..++ ++|+.|++++|.++......+...+++|++|++++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555544333333221 35556666666555444444433445566666666666544443332
Q ss_pred -CCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccc----ccccccCCCCcEEEcCCCCC
Q 016686 164 -MMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDAT----LFPLSTFKELIHLSLRNASL 238 (384)
Q Consensus 164 -~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~L~~n~i 238 (384)
..+.|++|++++|.+++..... -...+..+++|++|++++|.+++.. +..+..+++|++|++++|.|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~--------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAV--------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHH--------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCChHHHHH--------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3455666666666654322110 0013345566666666666665532 33444556677777777777
Q ss_pred ChhhH----HhccCCCCCCEEEccCCccCccccccccCC---C--CCCEEE--ccCCcC
Q 016686 239 TDVSL----HQLSSLSKLTNLSIRDAVLTNSGLGSFKPP---R--SLKLLD--LHGGWL 286 (384)
Q Consensus 239 ~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~--~L~~L~--l~~n~~ 286 (384)
++... ..+..+++|++|++++|.+++.+...+... . .++.+. +..+.+
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 65433 233455677777777777776655544332 1 156666 555555
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.1e-15 Score=122.22 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=97.1
Q ss_pred CCCCccEEeccCCCCC--chhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686 43 NKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 120 (384)
..++|++|++++|.++ .++.. +..+++|++|++++|.+..+..+..+++|++|++++|.+.+..+..+..+ ++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL--TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKL-PNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC--CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHC-TTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH--HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhC-CCCC
Confidence 5577888888888887 55543 45778888888888888777777888888888888888886666666667 8888
Q ss_pred EEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH---HhhhCCCCccEEEeeCCcCCcc
Q 016686 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI---SYMSMMPSLKFIDISNTDIKGF 181 (384)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~~n~l~~~ 181 (384)
.|++++|.+++......++.+++|++|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 888888887764321223567777777777777664433 3566667777777776665543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.8e-15 Score=118.53 Aligned_cols=129 Identities=20% Similarity=0.262 Sum_probs=86.8
Q ss_pred CCCCccEEeccCCCCC--chhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCcc
Q 016686 43 NKAPLAKISLAGTTFI--NEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLR 120 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 120 (384)
..++|++|++++|.++ .++.. +..+++|++|++++|.+.....+..+++|++|++++|.+++..|..+..+ ++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKC-PNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC--CTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHC-TTCC
T ss_pred CCccCeEEEccCCcCChhHHHHH--HhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhC-CCCC
Confidence 4466777777777776 44432 34677777777777777766667777778888888887776566666666 7777
Q ss_pred EEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHH---HhhhCCCCccEEEee
Q 016686 121 NLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAI---SYMSMMPSLKFIDIS 174 (384)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~~~~L~~L~l~ 174 (384)
.|++++|.+++......++.+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888877777764322223567777777777777665433 456666667666654
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=2.8e-14 Score=132.80 Aligned_cols=238 Identities=10% Similarity=0.160 Sum_probs=145.2
Q ss_pred CCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEee
Q 016686 23 SLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLS 100 (384)
Q Consensus 23 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~ 100 (384)
+|+.+.+..+ ++.++...|.-.+|+++.+.. .++.+... .|.+|++|+.+++..|.+..+ ..|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5777776654 555655555334577777764 45555443 366777777777777666665 2333 5667777776
Q ss_pred CCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCC-
Q 016686 101 SSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIK- 179 (384)
Q Consensus 101 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~- 179 (384)
. .+......++..+ ++|+.+.+..+ ++.....+|. . .+|+.+.+. +.++.....+|..+++|+.+.+.++.+.
T Consensus 212 ~-~l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~-~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQEAFR-E-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp T-TCCEECTTTTTTC-TTCCCEECCTT-CCEECTTTTT-T-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred C-chheehhhHhhCC-CCCCEEecCCC-ccCccccccc-c-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 3 3554555566666 67777777653 3333333332 2 567777773 4455455566677777777777766543
Q ss_pred ----cchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEE
Q 016686 180 ----GFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNL 255 (384)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L 255 (384)
..... +|..+++|+.+.+.. .++.+...+|.+|++|+.+.+..+ ++.....+|.++ +|+.+
T Consensus 286 ~~~~~I~~~------------aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 286 DPEAMIHPY------------CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CTTCEECTT------------TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CcccEECHH------------HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 22223 566777777777773 366666666777777777777543 666556667777 77777
Q ss_pred EccCCccCccccccccCC-CCCCEEEccCCc
Q 016686 256 SIRDAVLTNSGLGSFKPP-RSLKLLDLHGGW 285 (384)
Q Consensus 256 ~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~ 285 (384)
.+.+|.+.......|..+ ..++.+.+..+.
T Consensus 351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 777776666555556655 366677666554
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=9e-15 Score=132.95 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=183.5
Q ss_pred CCCCcEEEccCCCCC--------------------C-----CCC--------CCCCcEEEccCCCchhHHhhCc-CCCCc
Q 016686 2 FPRLSFLNLAWTGVT--------------------K-----LPN--------ISSLECLNLSNCTIDSILEGNE-NKAPL 47 (384)
Q Consensus 2 l~~L~~L~l~~n~i~--------------------~-----l~~--------~~~L~~L~ls~n~i~~~~~~~~-~~~~L 47 (384)
+++|++|||++|.+. . +.+ |++|+.|++.. .++.++...| .|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999999888 1 225 89999999999 8988888776 89999
Q ss_pred cEEeccCCCCCchhHHhhhcCCCCccEEEeecCC----CCCc--ccccCCCCcc-EEEeeCCCCCchhHHHHHhc---cC
Q 016686 48 AKISLAGTTFINEREAFLYIETSLLSFLDVSNSS----LSRF--CFLTQMKALE-HLDLSSSMIGDDSVEMVACV---GA 117 (384)
Q Consensus 48 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~----l~~~--~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~---~~ 117 (384)
++|++++|.++.+++. .|..+.++..+...... ...+ ..+..+..|+ .+.+.... ..+..+... ..
T Consensus 127 ~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPE-ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPR 202 (329)
T ss_dssp CEEEBCCSSCCEECTT-SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGG
T ss_pred ceEEcCCCCccccchh-hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCcc
Confidence 9999999999888765 57788877777765521 1222 3455677777 55665432 233333221 15
Q ss_pred CccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197 (384)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 197 (384)
++..+.+.++ +.......+...+++|+.+++++|.++.....+|..+++|+.+++..| +....+. +
T Consensus 203 ~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~------------a 268 (329)
T 3sb4_A 203 DINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR------------V 268 (329)
T ss_dssp GCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT------------T
T ss_pred ccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH------------H
Confidence 6778877765 443444455456899999999999998887788999999999999987 6665555 7
Q ss_pred hcCCCCCC-EEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEc
Q 016686 198 LQNLNHLE-RLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSI 257 (384)
Q Consensus 198 ~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l 257 (384)
|..+.+|+ .+++.+ .++.+.+.+|.+|++|+.+++.+|.++.....+|.++++|+.+..
T Consensus 269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999 999998 788888889999999999999999999998899999999999863
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=3.5e-16 Score=156.59 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=86.2
Q ss_pred CCcEEEccCCCCCCCCCCCCCcEEEccCCC----------chhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCcc
Q 016686 4 RLSFLNLAWTGVTKLPNISSLECLNLSNCT----------IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLS 73 (384)
Q Consensus 4 ~L~~L~l~~n~i~~l~~~~~L~~L~ls~n~----------i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 73 (384)
.++.|++.+|.+...+ ...++.++|+.+. +...+..+..++.|+.|+|++|.+..++..+. ++++|+
T Consensus 174 ~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF--KYDFLT 250 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG--GCCSCS
T ss_pred ccceEEeeCCCCCcch-hhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc--CCCCCC
Confidence 3556666666655432 1122333333333 33233344467777777777777776665432 667777
Q ss_pred EEEeecCCCCCc-ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCC
Q 016686 74 FLDVSNSSLSRF-CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGT 152 (384)
Q Consensus 74 ~L~ls~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 152 (384)
+|+|++|.|+.+ ..+..+++|++|+|++|.++ .+|..+..+ ++|+.|+|++|.++. .+.. ++.+++|++|+|++|
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC-FQLKYFYFFDNMVTT-LPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG-TTCSEEECCSSCCCC-CCSS-TTSCTTCCCEECTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC-CCCCEEECCCCCCCc-cChh-hhcCCCccEEeCCCC
Confidence 777777777655 35667777777777777776 456666666 777777777777653 3333 356777777777777
Q ss_pred CCChHHHHhhhCCCC-ccEEEeeCCcCCcchh
Q 016686 153 QIDDYAISYMSMMPS-LKFIDISNTDIKGFIQ 183 (384)
Q Consensus 153 ~i~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~ 183 (384)
.+++..|..+..... ...+++++|.+++.+|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 777666655543211 1234566666655443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=121.26 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=107.2
Q ss_pred CEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCccccccccc
Q 016686 145 EILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLST 224 (384)
Q Consensus 145 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 224 (384)
+.++++++.++.. |..+ .+++++|++++|.++... . .+..+++|+.|++++|.+++..+..+..
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~ip-~------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLVP-K------------ELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSCC-G------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchhH-H------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 5667777776632 2222 357888888888887543 4 5778888999999999888877778888
Q ss_pred CCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHH
Q 016686 225 FKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFC 296 (384)
Q Consensus 225 ~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 296 (384)
+++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.+++.+..+.
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~ 148 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLS 148 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHH
Confidence 899999999999998888888889999999999999998877777888899999999999987766544433
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2.3e-14 Score=119.71 Aligned_cols=131 Identities=13% Similarity=0.220 Sum_probs=99.6
Q ss_pred ccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH-hhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686 119 LRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS-YMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197 (384)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 197 (384)
-+.++++++.++. .|..+ ..++++|++++|.+++..+. .+..+++|++|++++|.+++..+. .
T Consensus 10 ~~~l~~s~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~ 73 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-IPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------A 73 (192)
T ss_dssp TTEEECTTSCCSS-CCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT------------T
T ss_pred CCEEEcCCCCcCc-CccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh------------H
Confidence 3567777777653 22211 23778888888877755443 367788888888888888877666 6
Q ss_pred hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++...
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77888888888888888887777788888888888888888888788888888888888888888754
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=119.79 Aligned_cols=125 Identities=20% Similarity=0.242 Sum_probs=72.3
Q ss_pred cEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEEeeCC
Q 016686 25 ECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSS 102 (384)
Q Consensus 25 ~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n 102 (384)
+.++++++.++.+|..++ ++|++|++++|.++.++.. |.++++|++|++++|.++.+ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~--~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKE--LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGG--GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHH--hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 455666666665555443 4566666666666655532 34566666666666666555 23556666666666666
Q ss_pred CCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCC
Q 016686 103 MIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQID 155 (384)
Q Consensus 103 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~ 155 (384)
.++...+..+..+ ++|+.|++++|.++......+ ..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l-~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGL-KSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTC-TTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCC-CCCCEEECCCCCCCeeChhhh-hcCccccEEEeCCCCee
Confidence 6665555555555 666666666666654333222 44666777777666653
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.2e-14 Score=118.04 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=73.2
Q ss_pred CCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc-c-ccCCCCccE
Q 016686 20 NISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-F-LTQMKALEH 96 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~-~~~~~~L~~ 96 (384)
++++|++|++++|.++.++. +. ..++|++|++++|.++++ . .+..+++|++|++++|.+..++ . +..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 45566666666666665532 33 233666666666666655 2 2446666666666666666552 2 355666666
Q ss_pred EEeeCCCCCchhHH--HHHhccCCccEEEccCCCCCchHHH--HHHhCCCCCCEEeccCCCCC
Q 016686 97 LDLSSSMIGDDSVE--MVACVGANLRNLNLSNTRFSSAGVG--ILAGHLPNLEILSLSGTQID 155 (384)
Q Consensus 97 L~L~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~ 155 (384)
|++++|.+.. ++. .+..+ ++|+.|++++|.++..... ..++.+++|+.|+++.|...
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCc-chhhHhhhcC-CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666653 332 45555 6666666666665432111 12345667777777666544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=9.7e-14 Score=114.28 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=101.7
Q ss_pred CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686 144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223 (384)
Q Consensus 144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 223 (384)
.+.+++++++++... .. ..+++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+.
T Consensus 9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSQNQIQSLPDGVFD 73 (177)
T ss_dssp TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCcccEeCHH------------HhcCcccccEEECCCCcceEeChhHcc
Confidence 456666666665332 11 235788888888888766555 567788888888888888877666678
Q ss_pred cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686 224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 290 (384)
Q Consensus 224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 290 (384)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888899999888888877777888899999999999998776666778889999999999886644
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=1.5e-13 Score=127.84 Aligned_cols=239 Identities=13% Similarity=0.192 Sum_probs=182.8
Q ss_pred CCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCCCCccEEE
Q 016686 21 ISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQMKALEHLD 98 (384)
Q Consensus 21 ~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~ 98 (384)
+..++.+.+.+ .++.|+...+.-.+|+++.+..+ ++.+... +|.++ +|+.+.+.. .+..+ ..|..|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46777777765 36667666663347999999776 7766654 46664 699999986 56655 5788999999999
Q ss_pred eeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcC
Q 016686 99 LSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDI 178 (384)
Q Consensus 99 L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l 178 (384)
+++|.++......+. + .+|+.+.+..+ +......+| ..+++|+.+.+..+ ++.....+|.. .+|+.+.+. +.+
T Consensus 187 l~~n~l~~I~~~aF~-~-~~L~~l~lp~~-l~~I~~~aF-~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-Y-AGIEEVLLPVT-LKEIGSQAF-LKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp CTTSCCSEECTTTTT-T-CCCSEEECCTT-CCEECTTTT-TTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred cCCCcceEechhhEe-e-cccCEEEeCCc-hheehhhHh-hCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 999988865555555 4 89999999754 554444444 56889999999764 55555567766 789999995 445
Q ss_pred CcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC-----cccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCC
Q 016686 179 KGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS-----DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLT 253 (384)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~ 253 (384)
...... +|..+++|+.+.+.++.+. .+....|.+|++|+.+.+. +.++.....+|.++++|+
T Consensus 260 ~~I~~~------------aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 260 TNIASR------------AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CEECTT------------TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred cEEChh------------HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence 555455 7889999999999888665 4566778899999999998 458887888999999999
Q ss_pred EEEccCCccCccccccccCCCCCCEEEccCCcC
Q 016686 254 NLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 254 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 286 (384)
.+.+..+ ++......|..+ +|+.+.+.+|..
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 9999654 777777889998 999999999875
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=130.75 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=128.9
Q ss_pred CCCccEEEeecCCCCCc------cccc-CCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHH---
Q 016686 69 TSLLSFLDVSNSSLSRF------CFLT-QMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILA--- 138 (384)
Q Consensus 69 l~~L~~L~ls~n~l~~~------~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--- 138 (384)
++.|+.|++++|.++.. ..+. ..++|++|++++|.+++.....+...+++|+.|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36788888888887654 1222 2368889999999888766655544337889999999998876555443
Q ss_pred -hCCCCCCEEeccCCCCChHHH----HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCC
Q 016686 139 -GHLPNLEILSLSGTQIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQ 213 (384)
Q Consensus 139 -~~l~~L~~L~l~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 213 (384)
...++|++|++++|.+++... ..+..+++|++|++++|.+.+..... -...+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~--------L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL--------LAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH--------HHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH--------HHHHHhcCCCcCeEECCCCC
Confidence 235789999999998876443 34467888999999999887543210 01156677889999999999
Q ss_pred CCcccc----cccccCCCCcEEEcCCCCCChhhHHhccCCCC-----CCEEE--ccCCccCc
Q 016686 214 VSDATL----FPLSTFKELIHLSLRNASLTDVSLHQLSSLSK-----LTNLS--IRDAVLTN 264 (384)
Q Consensus 214 l~~~~~----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-----L~~L~--l~~n~l~~ 264 (384)
+++... ..+..+++|++|++++|.|++.....+..+.. ++.+. +..+.+..
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 987543 33446788999999999999887776654322 55555 55555543
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=7.3e-14 Score=115.05 Aligned_cols=133 Identities=14% Similarity=0.197 Sum_probs=104.0
Q ss_pred CccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHh
Q 016686 118 NLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTA 197 (384)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 197 (384)
..+.+++++++++... . ...++|++|++++|.+++..+..+..+++|++|++++|.+++..+. .
T Consensus 8 ~~~~l~~~~~~l~~~p-~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~ 71 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVP-T---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG------------V 71 (177)
T ss_dssp ETTEEECCSSCCSSCC-T---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT------------T
T ss_pred CCCEEEecCCCCccCC-C---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh------------H
Confidence 4567777777776432 1 2346788888888888766666677888888999988888876665 5
Q ss_pred hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccc
Q 016686 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSG 266 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 266 (384)
+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 778888999999999888877667788889999999999988876666788899999999999887643
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.1e-14 Score=114.64 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=100.9
Q ss_pred cCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHHhccCCccE
Q 016686 42 ENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRN 121 (384)
Q Consensus 42 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 121 (384)
..+++|++|++++|.++.++.. ....++|++|++++|.+.+++.+..+++|++|++++|.+++..+..+..+ ++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~--~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENL--GATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQAL-PDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCG--GGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHC-TTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHh--hhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcC-CCCCE
Confidence 3788999999999999877432 12335899999999999888888888999999999999986544555777 88999
Q ss_pred EEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHH---hhhCCCCccEEEeeCCcCCc
Q 016686 122 LNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAIS---YMSMMPSLKFIDISNTDIKG 180 (384)
Q Consensus 122 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~---~l~~~~~L~~L~l~~n~l~~ 180 (384)
|++++|.++.......++.+++|++|++++|.++..... .+..+++|+.|++++|...+
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999998886543211235678888888888887643221 36677788888887776543
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.7e-14 Score=121.15 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=65.4
Q ss_pred chhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcc-cccCCCCccEEEeeCCCCCchhHHHH
Q 016686 34 IDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFC-FLTQMKALEHLDLSSSMIGDDSVEMV 112 (384)
Q Consensus 34 i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~ 112 (384)
++.+|..+..+++|++|++++|.++.++ .+.++++|+.|++++|.+..++ .+..+++|++|++++|.+++ .+ .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc---ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 4445555556666666666666666554 2335666666666666665552 23334566666666666654 22 45
Q ss_pred HhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChH
Q 016686 113 ACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDY 157 (384)
Q Consensus 113 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 157 (384)
..+ ++|+.|++++|.++.......++.+++|++|++++|.+.+.
T Consensus 112 ~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 112 EKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred ccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555 56666666666665433212234556666666666655433
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=6.6e-15 Score=123.67 Aligned_cols=125 Identities=19% Similarity=0.186 Sum_probs=103.4
Q ss_pred CCCCCcEEEccCCCchhHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCcccccCCCCccEEEe
Q 016686 20 NISSLECLNLSNCTIDSILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRFCFLTQMKALEHLDL 99 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L 99 (384)
.+++|++|++++|.++++| .+..+++|++|++++|.++.++..+ ..+++|++|++++|.+..++.+..+++|++|++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~--~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l 122 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD--AVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH--HHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh--hcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence 6889999999999999987 6668999999999999999877643 367899999999999999888888999999999
Q ss_pred eCCCCCchhH-HHHHhccCCccEEEccCCCCCchHHH---------HHHhCCCCCCEEe
Q 016686 100 SSSMIGDDSV-EMVACVGANLRNLNLSNTRFSSAGVG---------ILAGHLPNLEILS 148 (384)
Q Consensus 100 ~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~---------~~~~~l~~L~~L~ 148 (384)
++|.+++... ..+..+ ++|+.|++++|.+.+..+. ..+..+++|+.|+
T Consensus 123 ~~N~i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEECCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCcCCchhHHHHHhcC-CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999986433 577888 9999999999988655332 2234567777665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3.6e-12 Score=104.07 Aligned_cols=109 Identities=22% Similarity=0.200 Sum_probs=91.4
Q ss_pred CccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhc
Q 016686 167 SLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQL 246 (384)
Q Consensus 167 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l 246 (384)
..+.+++++|.++..+.. + .++++.|++++|.+++..+..+..+++|++|++++|++++..+..|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-------------~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-------------I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCCEEEeCCCCcCccCcc-------------C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 357788888888775433 2 3778999999999998878888899999999999999998877778
Q ss_pred cCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686 247 SSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 290 (384)
Q Consensus 247 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 290 (384)
..+++|++|++++|++++..+..|..+++|+.|++++|++.+.+
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 89999999999999999877777888999999999999886543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=9e-12 Score=102.04 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=87.9
Q ss_pred ccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhcc
Q 016686 168 LKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLS 247 (384)
Q Consensus 168 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 247 (384)
-+.++++++.+...+.. + .++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|.
T Consensus 14 ~~~l~~~~n~l~~iP~~-------------~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-------------I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSSCCSC-------------C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCccCCC-------------c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 36788888888665433 2 26788999999999888788888889999999999999887666778
Q ss_pred CCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHH
Q 016686 248 SLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTED 290 (384)
Q Consensus 248 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 290 (384)
.+++|++|++++|++++..+..|..+++|+.|++++|++.+.+
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 8899999999999998876666888899999999999886543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=7.4e-12 Score=102.19 Aligned_cols=107 Identities=16% Similarity=0.241 Sum_probs=77.0
Q ss_pred CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686 144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223 (384)
Q Consensus 144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 223 (384)
.+.+++++|.++.. |..+ .+.++.|++++|.+++..+. .+..+++|++|++++|++++..+..+.
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPG------------VFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChh------------hhcCcccCCEEECCCCCcCccChhhcc
Confidence 45666766666532 2222 35677777777777776666 577777888888888888776666677
Q ss_pred cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCcc
Q 016686 224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
.+++|++|++++|++++..+..+..+++|++|++++|+++..
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 788888888888888776666677888888888888877653
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=1.2e-11 Score=101.29 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccc
Q 016686 144 LEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLS 223 (384)
Q Consensus 144 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 223 (384)
-+.+++++|+++. .|..+ .+.|+.|++++|.+.+..+. .+..+++|+.|++++|++++..+..+.
T Consensus 14 ~~~l~~~~n~l~~-iP~~~--~~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPG------------VFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT------------TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCCCCCCc-cCCCc--CCCCcEEEeCCCCccccCHH------------HhcCCcCCCEEECCCCCCCccChhHhC
Confidence 3567777776653 23323 26778888888888777666 577788888888888888876666667
Q ss_pred cCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCc
Q 016686 224 TFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTN 264 (384)
Q Consensus 224 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~ 264 (384)
.+++|++|++++|++++..+..+..+++|++|++++|++..
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 78888888888888887666667888888888888888765
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=2.4e-11 Score=113.13 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=56.5
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 276 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 276 (384)
.+..+.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..+...|..|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556667777777554 55555566677777777777543 66656667777777777777655 665566677777777
Q ss_pred CEEEccCC
Q 016686 277 KLLDLHGG 284 (384)
Q Consensus 277 ~~L~l~~n 284 (384)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 77777543
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=5.5e-10 Score=102.06 Aligned_cols=57 Identities=23% Similarity=0.195 Sum_probs=30.2
Q ss_pred cCCCCccEEEeecCCCCCcccccCCCCccEEEeeCCCCCchhHHHHH--hccCCccEEEcc
Q 016686 67 IETSLLSFLDVSNSSLSRFCFLTQMKALEHLDLSSSMIGDDSVEMVA--CVGANLRNLNLS 125 (384)
Q Consensus 67 ~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~L~~L~L~ 125 (384)
..+|.|+.|.++++.-...+.+. +++|++|++..+.+.......+. .+ |+|+.|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~l-p~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDL-PNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBC-TTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccC-CCCcEEEEe
Confidence 35566777777665211122222 55666666666666554444444 34 566666653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.8e-10 Score=103.93 Aligned_cols=94 Identities=21% Similarity=0.232 Sum_probs=61.0
Q ss_pred hcCCCCCCEEEccC-CCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCC
Q 016686 198 LQNLNHLERLNLEQ-TQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSL 276 (384)
Q Consensus 198 ~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 276 (384)
+..+++|+.|++++ |.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..+..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 34455666677764 666666556666667777777777777766666667777777777777777665544444444 7
Q ss_pred CEEEccCCcCCCHHHH
Q 016686 277 KLLDLHGGWLLTEDAI 292 (384)
Q Consensus 277 ~~L~l~~n~~~~~~~~ 292 (384)
+.|+|.+|.+.+.+.+
T Consensus 106 ~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 106 QELVLSGNPLHCSCAL 121 (347)
T ss_dssp CEEECCSSCCCCCGGG
T ss_pred eEEEeeCCCccCCCcc
Confidence 7777777777555443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=3.1e-09 Score=97.04 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=90.3
Q ss_pred CCCCCcEEEccCCCch----------hHHhhCcCCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--cc
Q 016686 20 NISSLECLNLSNCTID----------SILEGNENKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CF 87 (384)
Q Consensus 20 ~~~~L~~L~ls~n~i~----------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~ 87 (384)
.+++|+.|.+...... .+...+..+|+|++|.++++.-..+++ + .+++|+.|++..+.+... ..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSBCCHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCCCChHHHHH
Confidence 4567777777543221 133333466777788777763112222 1 357777777777766543 22
Q ss_pred c--cCCCCccEEEeeCC--CC-Cch----hHHHH--HhccCCccEEEccCCCCCchHHHHHHh--CCCCCCEEeccCCCC
Q 016686 88 L--TQMKALEHLDLSSS--MI-GDD----SVEMV--ACVGANLRNLNLSNTRFSSAGVGILAG--HLPNLEILSLSGTQI 154 (384)
Q Consensus 88 ~--~~~~~L~~L~L~~n--~l-~~~----~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~i 154 (384)
+ ..+++|++|+|+.+ .. ... +...+ ..+ ++|+.|.+.+|.+.......++. .+++|++|+++.|.+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~-p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC-TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC-CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 2 25777777777531 11 100 00111 124 77888888777776544444432 466788888888877
Q ss_pred ChHHHHhh----hCCCCccEEEeeCCcCCcch
Q 016686 155 DDYAISYM----SMMPSLKFIDISNTDIKGFI 182 (384)
Q Consensus 155 ~~~~~~~l----~~~~~L~~L~l~~n~l~~~~ 182 (384)
++..+..+ ..+++|+.|+++.|.+++..
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 76554443 34577888888877776543
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=3.8e-09 Score=98.19 Aligned_cols=244 Identities=10% Similarity=0.161 Sum_probs=135.2
Q ss_pred CCCCCCCcEEEccCCC---chhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCCccEEEeecCCCCCc--ccccCC
Q 016686 18 LPNISSLECLNLSNCT---IDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSLLSFLDVSNSSLSRF--CFLTQM 91 (384)
Q Consensus 18 l~~~~~L~~L~ls~n~---i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~~ 91 (384)
+.+|.+|+.+.+..+. ++.+....| .+.+|+.+.+..+ ++.+... .|..+.+|+.+.+..+ +..+ ..+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~-aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE-AFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT-TTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh-hhhhhcccccccccce-eeeecccceecc
Confidence 3456666666665442 444444444 5566665555432 3333332 3556666666666433 2222 345556
Q ss_pred CCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccC--------------------
Q 016686 92 KALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSG-------------------- 151 (384)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~-------------------- 151 (384)
..|+.+.+..+ +......++.. ..|+.+.+..+... .....+ ..+..++......
T Consensus 160 ~~L~~i~~~~~-~~~I~~~aF~~--~~l~~i~ip~~~~~-i~~~af-~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
T 4gt6_A 160 YSLHTVTLPDS-VTAIEERAFTG--TALTQIHIPAKVTR-IGTNAF-SECFALSTITSDSESYPAIDNVLYEKSANGDYA 234 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTT--CCCSEEEECTTCCE-ECTTTT-TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE
T ss_pred cccccccccce-eeEeccccccc--cceeEEEECCcccc-cccchh-hhccccceecccccccccccceeeccccccccc
Confidence 66666666443 22222222322 34555555432211 111111 1233333322211
Q ss_pred ----------------CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCC
Q 016686 152 ----------------TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVS 215 (384)
Q Consensus 152 ----------------n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 215 (384)
+.+......+|..+..|+.+.+..+.. ..... +|..+..|+.+.+.. .++
T Consensus 235 ~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~------------aF~~c~~L~~i~l~~-~i~ 300 (394)
T 4gt6_A 235 LIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTG------------AFMNCPALQDIEFSS-RIT 300 (394)
T ss_dssp EEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTT------------TTTTCTTCCEEECCT-TCC
T ss_pred ccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCc------------ccccccccccccCCC-ccc
Confidence 111112234555667777777654332 22222 577788888888863 466
Q ss_pred cccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCc
Q 016686 216 DATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGW 285 (384)
Q Consensus 216 ~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 285 (384)
.+....|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++..+...|..|++|+.+++.++.
T Consensus 301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 666677888888998888754 66666778888889998888544 666677788888899999888764
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=9.3e-10 Score=100.47 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=61.9
Q ss_pred EEEccCC-CCCchHHHHHHhCCCCCCEEeccC-CCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhh
Q 016686 121 NLNLSNT-RFSSAGVGILAGHLPNLEILSLSG-TQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTAL 198 (384)
Q Consensus 121 ~L~L~~n-~l~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 198 (384)
.++++++ +++. .|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..+. .|
T Consensus 12 ~v~~~~~n~l~~-ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------AF 76 (347)
T ss_dssp CEECCSSCCCTT-TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------GG
T ss_pred EEEcCCCCCCCc-cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------Hh
Confidence 4566665 5553 333 24556666666664 666655555666666666666666666666555 46
Q ss_pred cCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCC
Q 016686 199 QNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLT 239 (384)
Q Consensus 199 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~ 239 (384)
..+++|+.|+|++|++++..+..+..++ |+.|++.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666666666666665444444443 666666666654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.98 E-value=3.1e-09 Score=98.80 Aligned_cols=259 Identities=10% Similarity=0.141 Sum_probs=163.9
Q ss_pred CCCCCcEEEccCCC---CCC-----CCCCCCCcEEEccCCCchhHHhhCc-CCCCccEEeccCCCCCchhHHhhhcCCCC
Q 016686 1 MFPRLSFLNLAWTG---VTK-----LPNISSLECLNLSNCTIDSILEGNE-NKAPLAKISLAGTTFINEREAFLYIETSL 71 (384)
Q Consensus 1 ~l~~L~~L~l~~n~---i~~-----l~~~~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 71 (384)
+|++|+.+.+..+. ++. +..|.+|+.+.+..+ ++.+....+ .+.+|+.+.+..+ +..+... .|..+..
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~-~F~~c~~ 161 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADG-MFSYCYS 161 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTT-TTTTCTT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeeccc-ceecccc
Confidence 47889999988764 333 447788888877654 455555544 8888999988643 4444333 4667888
Q ss_pred ccEEEeecCCCCCc--ccccCCCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCC---------------------
Q 016686 72 LSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTR--------------------- 128 (384)
Q Consensus 72 L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~--------------------- 128 (384)
|+.+.+..+ +..+ ..+ ....|+.+.+..+. ......++..+ .+++........
T Consensus 162 L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~-~~i~~~af~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 4gt6_A 162 LHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV-TRIGTNAFSEC-FALSTITSDSESYPAIDNVLYEKSANGDYALIR 237 (394)
T ss_dssp CCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC-CEECTTTTTTC-TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE
T ss_pred cccccccce-eeEeccccc-cccceeEEEECCcc-cccccchhhhc-cccceecccccccccccceeecccccccccccc
Confidence 888888654 3333 223 23557777665432 21222333333 334333222111
Q ss_pred ---------------CCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhh
Q 016686 129 ---------------FSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVL 193 (384)
Q Consensus 129 ---------------l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 193 (384)
+......+| ..+..|+.+.+..+ +......+|..++.|+.+.+. +.+......
T Consensus 238 ~~~~~~~~~~~ip~~v~~i~~~aF-~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~--------- 305 (394)
T 4gt6_A 238 YPSQREDPAFKIPNGVARIETHAF-DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPES--------- 305 (394)
T ss_dssp CCTTCCCSEEECCTTEEEECTTTT-TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTT---------
T ss_pred cccccccceEEcCCcceEccccee-eecccccEEecccc-cceecCcccccccccccccCC-CcccccCce---------
Confidence 111112222 46788999998654 333455678899999999996 345544444
Q ss_pred hHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCC
Q 016686 194 SLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPP 273 (384)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 273 (384)
+|..+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.+.++.... ..+..+
T Consensus 306 ---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~ 377 (394)
T 4gt6_A 306 ---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTD 377 (394)
T ss_dssp ---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCC
T ss_pred ---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhcc
Confidence 7899999999999875 77777778999999999999754 777778899999999999999876432 356677
Q ss_pred CCCCEEEccCCcC
Q 016686 274 RSLKLLDLHGGWL 286 (384)
Q Consensus 274 ~~L~~L~l~~n~~ 286 (384)
.+|+.+.+..+.+
T Consensus 378 ~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 378 SGLQNLPVAPGSI 390 (394)
T ss_dssp CCC----------
T ss_pred CCCCEEEeCCCCE
Confidence 8899888876653
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=2.1e-09 Score=99.92 Aligned_cols=165 Identities=11% Similarity=0.162 Sum_probs=106.3
Q ss_pred CCCccEEEeeCCCCCchhHHHHHhccCCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccE
Q 016686 91 MKALEHLDLSSSMIGDDSVEMVACVGANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKF 170 (384)
Q Consensus 91 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 170 (384)
...|+.+.+... +.......+..+ ..++.+.+..+... ..... +..+..++.+......+. ...+..+.+|+.
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~-~~l~~~~~~~~~~~-i~~~~-F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~ 301 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGC-TDLESISIQNNKLR-IGGSL-FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTE 301 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTC-SSCCEEEECCTTCE-ECSCT-TTTCTTCCEEEECSSEEC---TTTTTTCTTCCE
T ss_pred cCCCceEEECCC-ceeccccccccc-ccceeEEcCCCcce-eeccc-cccccccceeccCceeec---cccccccccccc
Confidence 344555544322 222222334444 56666666544321 11111 234566666665544332 235667888988
Q ss_pred EEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCC
Q 016686 171 IDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLS 250 (384)
Q Consensus 171 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 250 (384)
+.+..+ +...... +|..+.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+++
T Consensus 302 i~l~~~-i~~I~~~------------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 302 VKLLDS-VKFIGEE------------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp EEECTT-CCEECTT------------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccc-cceechh------------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 888654 4433344 7889999999999765 77777788999999999999876 8877788999999
Q ss_pred CCCEEEccCCccCccccccccCCCCCCEE
Q 016686 251 KLTNLSIRDAVLTNSGLGSFKPPRSLKLL 279 (384)
Q Consensus 251 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 279 (384)
+|+.+.+..+ ++. ....|..+++|+.+
T Consensus 367 ~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 9999999765 333 23567788877764
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.93 E-value=1.6e-09 Score=87.48 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=90.0
Q ss_pred CCCCEEEccCCCCCcccccccccCCCCcEEEcCCC-CCChhhHHhccCC----CCCCEEEccCCc-cCccccccccCCCC
Q 016686 202 NHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNA-SLTDVSLHQLSSL----SKLTNLSIRDAV-LTNSGLGSFKPPRS 275 (384)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 275 (384)
..|+.|+++++.+++.....+..+++|++|+|++| .|++.....++.+ ++|++|++++|. +++.+...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46899999999999888888889999999999999 5999888888875 489999999985 99999888999999
Q ss_pred CCEEEccCCcCCCHHH--HHHHHHhCCCceee
Q 016686 276 LKLLDLHGGWLLTEDA--ILQFCKMHPRIEVW 305 (384)
Q Consensus 276 L~~L~l~~n~~~~~~~--~~~~~~~~~~l~~~ 305 (384)
|+.|++++|.-+++.+ ...+...+|.+++.
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 9999999998777654 56677889998865
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=2.4e-09 Score=88.44 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=49.2
Q ss_pred hcCCCCCCEEEccCCCCCcccc----cccccCCCCcEEEcCCCCCChhh----HHhccCCCCCCEEEc--cCCccCcccc
Q 016686 198 LQNLNHLERLNLEQTQVSDATL----FPLSTFKELIHLSLRNASLTDVS----LHQLSSLSKLTNLSI--RDAVLTNSGL 267 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~L~~L~l--~~n~l~~~~~ 267 (384)
+...++|++|++++|.+++... ..+...+.|++|+|++|.|++.. ...+...++|++|++ ++|.+++.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3344455555555555544322 22234455666666666665542 334455666777777 6677666543
Q ss_pred c----cccCCCCCCEEEccCCcC
Q 016686 268 G----SFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 268 ~----~~~~~~~L~~L~l~~n~~ 286 (384)
. .+...++|++|++++|.+
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCcCEEeccCCCC
Confidence 3 233346788888888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=3.9e-09 Score=87.13 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCCCCEEeccCC-CCChHHH----HhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHHhhcCCCCCCEEEccCCCC
Q 016686 140 HLPNLEILSLSGT-QIDDYAI----SYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLTALQNLNHLERLNLEQTQV 214 (384)
Q Consensus 140 ~l~~L~~L~l~~n-~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 214 (384)
..+.|++|++++| .+++... ..+...++|++|++++|.+.......+ ...+...++|++|++++|.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--------~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--------AEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--------HHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--------HHHHHhCCCcCEEECcCCcC
Confidence 3445555555555 4443322 222334455555555555543221100 00233445566666666666
Q ss_pred Cccc----ccccccCCCCcEEEc--CCCCCChhhH----HhccCCCCCCEEEccCCccCcc
Q 016686 215 SDAT----LFPLSTFKELIHLSL--RNASLTDVSL----HQLSSLSKLTNLSIRDAVLTNS 265 (384)
Q Consensus 215 ~~~~----~~~l~~~~~L~~L~L--~~n~i~~~~~----~~l~~~~~L~~L~l~~n~l~~~ 265 (384)
++.. ...+...+.|++|++ ++|.+++... ..+...++|++|++++|.+...
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 5542 334445566666666 6666665432 3344556777777777776543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=3.4e-07 Score=84.43 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=37.1
Q ss_pred hcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCC
Q 016686 198 LQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLK 277 (384)
Q Consensus 198 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 277 (384)
+..+..|+.+.+..+ +.......+..|++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++..+...|..|++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 444444444444332 33333334444555555555444444444444555555555554322 3333344444445555
Q ss_pred EEEc
Q 016686 278 LLDL 281 (384)
Q Consensus 278 ~L~l 281 (384)
.+.+
T Consensus 337 ~i~i 340 (379)
T 4h09_A 337 TISY 340 (379)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 4444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.66 E-value=4e-07 Score=83.98 Aligned_cols=140 Identities=13% Similarity=0.229 Sum_probs=98.0
Q ss_pred CCccEEEccCCCCCchHHHHHHhCCCCCCEEeccCCCCChHHHHhhhCCCCccEEEeeCCcCCcchhhcccchhhhhhHH
Q 016686 117 ANLRNLNLSNTRFSSAGVGILAGHLPNLEILSLSGTQIDDYAISYMSMMPSLKFIDISNTDIKGFIQQVGAETDLVLSLT 196 (384)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 196 (384)
.+++.+.+..+ +.......+ ..+..|+.+.+..+ ++.....++..+.+++.+.+..+ +......
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f-~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~------------ 280 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAF-YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL------------ 280 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTT-TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT------------
T ss_pred cccceeeeccc-eeEEccccc-cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc------------
Confidence 45555555432 221222222 34677887777554 55455566777888888887643 4433333
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCC
Q 016686 197 ALQNLNHLERLNLEQTQVSDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPR 274 (384)
Q Consensus 197 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 274 (384)
+|..+.+|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++..+..+|..+.
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6889999999999998888887888999999999999754 77777788999999999998654 6655556666653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=2.4e-07 Score=74.73 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=40.8
Q ss_pred CCccEEEeecCCCCCc--ccccCCCCccEEEeeCCC-CCchhHHHHHhc---cCCccEEEccCCC-CCchHHHHHHhCCC
Q 016686 70 SLLSFLDVSNSSLSRF--CFLTQMKALEHLDLSSSM-IGDDSVEMVACV---GANLRNLNLSNTR-FSSAGVGILAGHLP 142 (384)
Q Consensus 70 ~~L~~L~ls~n~l~~~--~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~---~~~L~~L~L~~n~-l~~~~~~~~~~~l~ 142 (384)
..|++|++++|.+++. ..+..+++|++|+|++|. +++.....+..+ +++|++|++++|. ++......+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 3456666666655443 344555556666666553 555444444432 1245555555542 444444443 2345
Q ss_pred CCCEEeccCC
Q 016686 143 NLEILSLSGT 152 (384)
Q Consensus 143 ~L~~L~l~~n 152 (384)
+|++|+++++
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 5555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.6e-07 Score=81.45 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=37.2
Q ss_pred CCCCccEEeccCCCCCchhHH-hhhcCCCCccEEEeecCCCCCcccccCCC--CccEEEeeCCCCCc
Q 016686 43 NKAPLAKISLAGTTFINEREA-FLYIETSLLSFLDVSNSSLSRFCFLTQMK--ALEHLDLSSSMIGD 106 (384)
Q Consensus 43 ~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~--~L~~L~L~~n~l~~ 106 (384)
++++|++|+|++|.++++... -.+..+++|+.|+|++|.|.+...+..+. +|++|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 566677777777766654321 01335666777777777666653333333 66666666666654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.21 E-value=7e-06 Score=67.42 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=40.1
Q ss_pred CCCCCCEEEccCCCCCcccccc----cccCCCCcEEEcCCCCCChhhH----HhccCCCCCCEEEccCC---ccCcccc-
Q 016686 200 NLNHLERLNLEQTQVSDATLFP----LSTFKELIHLSLRNASLTDVSL----HQLSSLSKLTNLSIRDA---VLTNSGL- 267 (384)
Q Consensus 200 ~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~L~~n~i~~~~~----~~l~~~~~L~~L~l~~n---~l~~~~~- 267 (384)
..+.|+.|+|++|.+.+..... +..-+.|++|+|+.|.|++... ..+...+.|++|++++| .+.+.+.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 3344444444444444332222 2233445555555555544322 23344555666666543 3333222
Q ss_pred ---ccccCCCCCCEEEccCCcC
Q 016686 268 ---GSFKPPRSLKLLDLHGGWL 286 (384)
Q Consensus 268 ---~~~~~~~~L~~L~l~~n~~ 286 (384)
..+..-++|++|+++.|.+
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhCCCcCeEeccCCCc
Confidence 2233346677777766654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.19 E-value=5.3e-06 Score=68.13 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=50.3
Q ss_pred CCCccEEEeecC-CCCCc------ccccCCCCccEEEeeCCCCCchhHHHHHhcc---CCccEEEccCCCCCchHHHHHH
Q 016686 69 TSLLSFLDVSNS-SLSRF------CFLTQMKALEHLDLSSSMIGDDSVEMVACVG---ANLRNLNLSNTRFSSAGVGILA 138 (384)
Q Consensus 69 l~~L~~L~ls~n-~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~~~ 138 (384)
-+.|++|+|+++ .|.+. ..+...+.|+.|+|++|.+.+.....++.++ ..|+.|+|++|.|+......+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555543 44322 2344455555666666655543332222211 5555666666555554443332
Q ss_pred hC---CCCCCEEeccCC---CCChHH----HHhhhCCCCccEEEeeCCc
Q 016686 139 GH---LPNLEILSLSGT---QIDDYA----ISYMSMMPSLKFIDISNTD 177 (384)
Q Consensus 139 ~~---l~~L~~L~l~~n---~i~~~~----~~~l~~~~~L~~L~l~~n~ 177 (384)
.. -+.|++|+++++ .+.+.. ...+...+.|+.|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22 234666665433 334322 2333444555555555443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=4.2e-06 Score=72.53 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=7.3
Q ss_pred CCCCCEEEccCCCCCc
Q 016686 201 LNHLERLNLEQTQVSD 216 (384)
Q Consensus 201 ~~~L~~L~l~~n~l~~ 216 (384)
++.|+.|++++|.+++
T Consensus 169 l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR 184 (267)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 3444444444444444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0013 Score=50.14 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=47.6
Q ss_pred cEEEcCCCCCC-hhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCCcCCCHHHHHHHHH
Q 016686 229 IHLSLRNASLT-DVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGGWLLTEDAILQFCK 297 (384)
Q Consensus 229 ~~L~L~~n~i~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 297 (384)
..++.+++.++ ..+|..+. ++|++|+|++|+|+......|..+++|+.|+|++|++.++..+..+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence 35666666666 12443332 468888888888888777778888889999999999887776555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0013 Score=50.29 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=5.6
Q ss_pred ccEEeccCCCCCch
Q 016686 47 LAKISLAGTTFINE 60 (384)
Q Consensus 47 L~~L~l~~n~~~~~ 60 (384)
|++|+|++|.++.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 33444444444333
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.17 E-value=6.8 Score=27.69 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=22.2
Q ss_pred CcccccccccCCCCcEEEcCCCCCChhhHHhccCCCCCCEEEccC
Q 016686 215 SDATLFPLSTFKELIHLSLRNASLTDVSLHQLSSLSKLTNLSIRD 259 (384)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~L~~L~l~~ 259 (384)
+.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333344555555555555443 3333444555556666555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.82 E-value=13 Score=26.26 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=39.1
Q ss_pred CCCCChhhHHhccCCCCCCEEEccCCccCccccccccCCCCCCEEEccCC
Q 016686 235 NASLTDVSLHQLSSLSKLTNLSIRDAVLTNSGLGSFKPPRSLKLLDLHGG 284 (384)
Q Consensus 235 ~n~i~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 284 (384)
+..++.....+|.++.+|+.+.+-.+ ++..+...|..|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566666678999999999998754 66667788999999999999774
Done!