BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016688
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74038|RSMI_SYNY3 Ribosomal RNA small subunit methyltransferase I OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1
Length = 279
Score = 242 bits (617), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/255 (48%), Positives = 162/255 (63%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLVATPIGNL D+T RA+ L++ ++I +EDTRH+GKLLQ++ I TP +SYH N R
Sbjct: 4 LYLVATPIGNLGDMTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISYHDHNRHGR 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
Q +L +L+ G+ +AL+SDAGTPGISDPG EL C + I V+PIPGA+A +AAL +SG
Sbjct: 64 TQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATALIAALISSG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LATD F F GFL R R + L A E +T I Y PH+LL L + G R
Sbjct: 124 LATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQERSLT 183
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEKELRGL 322
+ARE+TK HE+FWRGTL A F+ + PKGE +++ G + SE+ L ELR L
Sbjct: 184 VARELTKYHEQFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEENLRDELRSL 243
Query: 323 ISAGHNLSMVTTTLV 337
++ G S + L
Sbjct: 244 MAKGLTRSQASRQLA 258
>sp|Q9KGL2|RSMI_BACHD Ribosomal RNA small subunit methyltransferase I OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=rsmI PE=3 SV=1
Length = 289
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 149/233 (63%), Gaps = 1/233 (0%)
Query: 71 EQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP 130
+QS ++ + LYLVATPIGNLED+T RA+R LK A+ I +EDTR + KLL +++I T
Sbjct: 4 QQSYQQRDDKGTLYLVATPIGNLEDVTFRAIRTLKEADQIAAEDTRQTKKLLNHFDIATK 63
Query: 131 LLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190
L+SYH+ N+ + +++ L +G +AL+SDAG P ISDPG EL + E I V+PIPG
Sbjct: 64 LVSYHEHNKETMGKRLIDDLIEGRTIALVSDAGMPAISDPGYELVVSAIKEGIAVIPIPG 123
Query: 191 ASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
A+A V AL ASGL T+ F F+GFLP+ + R + L + T IFY PH+L L++
Sbjct: 124 ANAAVTALIASGLPTESFQFIGFLPRQKKQRRQALEETKPTKATLIFYESPHRLKDTLDD 183
Query: 251 TSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303
L+ G +R I RE+TK +EEF RGTL EA KGE ++VEG
Sbjct: 184 MLLILG-NRHVSICRELTKTYEEFLRGTLEEAVHWAREATIKGEFCLIVEGNG 235
>sp|P45298|RSMI_HAEIN Ribosomal RNA small subunit methyltransferase I OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rsmI PE=3 SV=1
Length = 283
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 2/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL+DIT RAL ++I +EDTRHSG LL +Y IK P + H NE ++
Sbjct: 8 LYIVATPIGNLQDITQRALETFAQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQEK 67
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ +LKQG +ALISDAGTP ISDPG L + C + I VVP+PGA A + AL ASG
Sbjct: 68 AHILVEKLKQGSNIALISDAGTPLISDPGFHLVRQCREAGIRVVPLPGACAAITALCASG 127
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
+A+D F F GFLP +++R ++L A E +T IFY H++L LE+ + G R V
Sbjct: 128 IASDRFCFEGFLPAKSKARKDKLENIAEEDRTLIFYESTHRILDTLEDMQAVLGEERYIV 187
Query: 263 IAREITKMHEEFWRGTLGEAKEAF--SSHQPKGEITVLVEGK 302
+ARE+TK E T+ +E ++ KGE+ ++VEGK
Sbjct: 188 LAREMTKTWETITGNTIKNLREWLLEDPNRTKGEMVLIVEGK 229
>sp|Q9CN04|RSMI_PASMU Ribosomal RNA small subunit methyltransferase I OS=Pasteurella
multocida (strain Pm70) GN=rsmI PE=3 SV=1
Length = 281
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 141/222 (63%), Gaps = 2/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL+DIT RAL + + ++I +EDTRHSG LL +Y IK P + H NE Q+
Sbjct: 8 LYIVATPIGNLQDITQRALAIFEQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQQK 67
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ +L+QG+ +ALISDAGTP ISDPG L + C I VVPIPGA A V AL ASG
Sbjct: 68 AHLLVEKLQQGQHIALISDAGTPLISDPGFHLVRQCRQAGIKVVPIPGACAAVTALCASG 127
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
+A+D F F GFLP +++R ++L A E +T IFY H++L L + G R V
Sbjct: 128 IASDRFCFEGFLPAKSKARCDKLQNLAEEERTLIFYESTHRILDTLADIEKTLGAERYVV 187
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGK 302
+AREITK E + ++ ++ KGE+ +++EGK
Sbjct: 188 LAREITKTWETIVGDNVANLRQWLGEDPNRTKGEMVLIIEGK 229
>sp|Q9HVZ3|RSMI_PSEAE Ribosomal RNA small subunit methyltransferase I OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmI PE=3 SV=1
Length = 282
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 143/221 (64%), Gaps = 2/221 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
L++VATPIGNL+DI+ RALRVL+ ++ +EDTRHS +L Q++ I+TPL + H+ NE +
Sbjct: 6 LFVVATPIGNLDDISPRALRVLREVALVAAEDTRHSIRLFQHFGIETPLAACHEHNEREE 65
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++RL+ GE VALISDAGTP ISDPG L + I VVP+PG+ A +AALSA+G
Sbjct: 66 GGRFISRLQGGEDVALISDAGTPLISDPGFHLVRQAQALGIRVVPVPGSCALIAALSAAG 125
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F F GFLP A R RL E +T IFY PH+LL+ L + +FG RR V
Sbjct: 126 LPSDRFIFEGFLPAKAAGRRSRLQAVQEEPRTLIFYEAPHRLLESLADMRDVFGGERRAV 185
Query: 263 IAREITKMHEEFWRGTLGEAKE--AFSSHQPKGEITVLVEG 301
+ARE++K E L E + A S+Q +GE VLV G
Sbjct: 186 LARELSKTFETIRSLPLAELHDWVASDSNQQRGECVVLVAG 226
>sp|P67087|RSMI_ECOLI Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli
(strain K12) GN=rsmI PE=1 SV=1
Length = 286
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 2/232 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQ++ I L + H NE Q+
Sbjct: 14 LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T+L +L++G+ +AL+SDAGTP I+DPG L + C + I VVP+PG A + ALSA+G
Sbjct: 74 AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F + GFLP ++ R + L E +T IFY H+LL LE+ + G SR V
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVV 193
Query: 263 IAREITKMHEEFWRGTLGE--AKEAFSSHQPKGEITVLVEGKAICVVETPSE 312
+ARE+TK E +GE A ++ KGE+ ++VEG + P++
Sbjct: 194 LARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPAD 245
>sp|P67088|RSMI_ECO57 Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli
O157:H7 GN=rsmI PE=3 SV=1
Length = 286
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 2/232 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQ++ I L + H NE Q+
Sbjct: 14 LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T+L +L++G+ +AL+SDAGTP I+DPG L + C + I VVP+PG A + ALSA+G
Sbjct: 74 AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L +D F + GFLP ++ R + L E +T IFY H+LL LE+ + G SR V
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVV 193
Query: 263 IAREITKMHEEFWRGTLGE--AKEAFSSHQPKGEITVLVEGKAICVVETPSE 312
+ARE+TK E +GE A ++ KGE+ ++VEG + P++
Sbjct: 194 LARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPAD 245
>sp|Q9KUD9|RSMI_VIBCH Ribosomal RNA small subunit methyltransferase I OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmI PE=3 SV=1
Length = 288
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 140/223 (62%), Gaps = 2/223 (0%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES 140
P LY+V TPIGNL DIT RAL VL S ++I EDTRH+GKLL ++NI T + H NE
Sbjct: 12 PILYIVPTPIGNLGDITQRALDVLASVDMIAVEDTRHTGKLLAHFNISTKTFALHDHNEQ 71
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
Q+ Q ++++L G +AL+SDAGTP ISDPG L C + VVP+PG A + ALSA
Sbjct: 72 QKAQVLVDKLLSGLSIALVSDAGTPLISDPGYHLVTQCRQAGVKVVPLPGPCAVITALSA 131
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL +D F+F GFLP +++R ++L+ A +T IFY PH++ + L++ + G R
Sbjct: 132 SGLPSDSFSFEGFLPAKSKARKDKLLEIAKVSRTCIFYESPHRICESLQDMLDVLGGERE 191
Query: 261 CVIAREITKMHEEFWRGTLGEAKE--AFSSHQPKGEITVLVEG 301
V+ARE+TK E L E A ++ KGE+ +LV G
Sbjct: 192 VVLARELTKTFETIQGMPLAELITWIAEDDNRKKGEMVLLVHG 234
>sp|Q87B70|RSMI_XYLFT Ribosomal RNA small subunit methyltransferase I OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rsmI PE=3
SV=1
Length = 273
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 145/226 (64%), Gaps = 3/226 (1%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG L++VATPIGNL D++ RA +L++ +I +EDTRH+ +LL ++ I+ PLL+ H NE
Sbjct: 4 PGTLHIVATPIGNLGDLSPRAQHILRTVTMICAEDTRHTRQLLAHFGIERPLLALHAHNE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
+ ++ RL GE +AL+SDAGTP ISDPG L + I V P+PG SA +AALS
Sbjct: 64 DTLAERIITRLISGESLALVSDAGTPLISDPGFLLVRAARAAGIRVTPVPGPSALIAALS 123
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++ FTF GFLP +R +RL A+E +T IFY H++ + L + + +FG R
Sbjct: 124 VSGLPSNRFTFEGFLPAKPTARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMR 183
Query: 260 RCVIAREITKMHEEFWRGTLG--EAKEAFSSHQPKGEITVLVEGKA 303
V+ARE+TK+ E GTL + + A +Q KGE ++V+G A
Sbjct: 184 IAVVARELTKIFETVLDGTLATLQTQVANDENQRKGEFVIIVQGAA 229
>sp|Q9PFV5|RSMI_XYLFA Ribosomal RNA small subunit methyltransferase I OS=Xylella
fastidiosa (strain 9a5c) GN=rsmI PE=3 SV=1
Length = 273
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 144/226 (63%), Gaps = 3/226 (1%)
Query: 81 PG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE 139
PG L++VATPIGNL D++ RA +L++ +I +EDTRH+ +LL ++ I+ PLL+ H NE
Sbjct: 4 PGTLHIVATPIGNLGDLSPRAQHILRTVTMICAEDTRHTRQLLAHFGIERPLLALHAHNE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
+ ++ RL G +AL+SDAGTP ISDPG L + I V P+PG SA +AALS
Sbjct: 64 DTLAERIITRLISGASLALVSDAGTPLISDPGFLLVRAARAAGIRVTPVPGPSALIAALS 123
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSR 259
SGL ++ FTF GFLP +R +RL A+E +T IFY H++ + L + + +FG R
Sbjct: 124 VSGLPSNRFTFEGFLPAKPTARRDRLTHLAHEPRTLIFYEASHRIAECLTDLATIFGSMR 183
Query: 260 RCVIAREITKMHEEFWRGTLG--EAKEAFSSHQPKGEITVLVEGKA 303
V+ARE+TK+ E GTL + + A +Q KGE ++V+G A
Sbjct: 184 AAVVARELTKIFETVLDGTLATLQTQVANDDNQRKGEFVIIVQGAA 229
>sp|Q9WZG8|RSMI_THEMA Ribosomal RNA small subunit methyltransferase I OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=rsmI PE=3 SV=1
Length = 222
Score = 186 bits (471), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 4/221 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
L +V TPIGNLEDIT+RAL+ L+ ++IL+EDTR + LL Y IK PLLS+++ N +R
Sbjct: 4 LIIVGTPIGNLEDITIRALKTLREVDLILAEDTRRTMVLLNKYRIKKPLLSFNERNSKKR 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L LK+G+ VA++SDAG P ISDPG L + C E I V +PG SA +A++ SG
Sbjct: 64 IKEILPLLKEGKKVAIVSDAGMPVISDPGYNLVEECWREGIEVDIVPGPSALTSAVAVSG 123
Query: 203 LATDEFTFVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRC 261
+F F GFLP+ R RL+ S E + +F+ P +LL L + + G R
Sbjct: 124 FPGSKFIFEGFLPRGKNRR--RLLKSLKKENRVIVFFESPERLLSTLRDILEIIG-DREV 180
Query: 262 VIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302
IARE+TK+H+EF+RG + EA F +P GEITV++ GK
Sbjct: 181 FIAREMTKLHQEFFRGKVSEAISHFEKKKPLGEITVVLSGK 221
>sp|Q98DM9|RSMI_RHILO Ribosomal RNA small subunit methyltransferase I OS=Rhizobium loti
(strain MAFF303099) GN=rsmI PE=3 SV=1
Length = 294
Score = 185 bits (470), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 137/236 (58%), Gaps = 2/236 (0%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
PLEP LYLVATPIGNL DITLRAL L +A+++ EDTR S LL Y I+ +YH+
Sbjct: 11 PLEPALYLVATPIGNLADITLRALETLAAADIVACEDTRVSRVLLDRYGIRRRTTAYHEH 70
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
N + ++ L+ G+ VALISDAGTP +SDPG L +D I VVPIPG SA +AA
Sbjct: 71 NAGEAGPKLIAALQGGQSVALISDAGTPLVSDPGYRLVGEAIDHGIRVVPIPGPSAPLAA 130
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
L+ASGL +D F F GFLP R RL T IF+ P +L + L G
Sbjct: 131 LTASGLPSDAFLFAGFLPVKVGQRLTRLEALKAVPATLIFFESPRRLAESLGAMVEALGG 190
Query: 258 SRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQ-PKGEITVLVEGKAICVVETPSE 312
R+ I RE+TK EE GTL + +++ PKGEI V V G A + P++
Sbjct: 191 ERKAAIGRELTKTFEEMRTGTLRALADHYAAADTPKGEIVVCV-GPAEAKADEPAD 245
>sp|Q8KA29|RSMI_BUCAP Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rsmI PE=3 SV=1
Length = 285
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 5/223 (2%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RA+ LK+ N+I +E+ H+ LLQ+YN+K L+S +K NE ++
Sbjct: 10 LYIVPTPIGNLSDITYRAVETLKNVNLIAAENIHHTNILLQHYNVKNILISLNKNNEKKQ 69
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
V+N LK+G+ +AL+SDAGTP I+DPG L K C I ++P+PG A + ALSASG
Sbjct: 70 SDYVINELKKGKKIALVSDAGTPVINDPGYFLVKKCCFLNIKIIPLPGPCAAITALSASG 129
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
++T+ F + GFLP + R + L E++T IFY H++L+ +++ +R V
Sbjct: 130 ISTNRFCYEGFLPSKKKIRRDLLKSLKKEIRTIIFYESKHRILESIKDIIETIDENRYLV 189
Query: 263 IAREITKMHEEFWRGT----LGEAKEAFSSHQPKGEITVLVEG 301
IAREITK E + L KE S ++ KGEI ++++G
Sbjct: 190 IAREITKKWEYIYGAKANIILSWLKEDQSRYK-KGEIVIIIDG 231
>sp|P37544|RSMI_BACSU Ribosomal RNA small subunit methyltransferase I OS=Bacillus
subtilis (strain 168) GN=rsmI PE=3 SV=1
Length = 292
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 140/235 (59%), Gaps = 2/235 (0%)
Query: 68 LILEQSSKRGPLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
++ Q S G + G LYLV TPIGNLED+T RA+ LKS + I +EDTR + KL Y
Sbjct: 1 MLRRQMSFNGKSDMGILYLVPTPIGNLEDMTFRAIDTLKSVDAIAAEDTRQTKKLCHVYE 60
Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
I+TPL+SYH+ N+ ++ LK G+ +AL+SDAG P ISDPG E+ K D VV
Sbjct: 61 IETPLVSYHEHNKESSGHKIIEWLKSGKNIALVSDAGLPTISDPGAEIVKDFTDIGGYVV 120
Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQ 246
P+PGA+A + AL ASG+ F F GFL + + + + L +T IFY PH+L +
Sbjct: 121 PLPGANAALTALIASGIVPQPFFFYGFLNRQKKEKKKELEALKKRQETIIFYEAPHRLKE 180
Query: 247 FLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301
L + + G R + RE+TK +EEF RGT+ E + Q +GE ++VEG
Sbjct: 181 TLSAMAEILG-DREIAVTRELTKKYEEFIRGTISEVIGWANEDQIRGEFCLVVEG 234
>sp|P57192|RSMI_BUCAI Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=rsmI PE=3 SV=1
Length = 282
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 137/221 (61%), Gaps = 2/221 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DIT RAL VLK ++I +E+ RH+ LLQ++NIK L+ +K NE ++
Sbjct: 9 LYIVPTPIGNLSDITYRALEVLKDVDIIAAENIRHTNILLQHFNIKNNLILMNKDNEKKQ 68
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ LK+G+ +AL+S+AGTP I+DPG L K C I V+P+PGA A + ALSASG
Sbjct: 69 SHNLIQELKKGKKIALVSNAGTPIINDPGCILIKQCHIFDIKVIPLPGACAAITALSASG 128
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
+ + F + GFLP +SR + L E +T IFY H++L+ +++ +R V
Sbjct: 129 IINNRFCYEGFLPSRKKSRCDLLHSLKEETRTIIFYESKHRILESIKDIIEQIDKNRHIV 188
Query: 263 IAREITKMHEEFWRGTLGEAKEAF--SSHQPKGEITVLVEG 301
IARE+TK E + E + ++ KGE+ ++++G
Sbjct: 189 IAREMTKKWESIYGAKASLILEWLKENKYRYKGEMVIIIDG 229
>sp|Q08329|RSMI_MICOL Ribosomal RNA small subunit methyltransferase I (Fragment)
OS=Micromonospora olivasterospora GN=rsmI PE=3 SV=1
Length = 313
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 131/220 (59%), Gaps = 2/220 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGN DITLRA+ VL+ V+ SEDTRH+ +L Q I L+SYH NE R
Sbjct: 33 LYLVPTPIGNPGDITLRAIEVLRRVGVVASEDTRHTYRLFQSLEIDARLVSYHDHNEESR 92
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L L++G VAL+SDAGTP ++DPG L V+ +PV P+PGA+A V AL SG
Sbjct: 93 SRQLLGLLREGTDVALVSDAGTPLVNDPGYRLVAAAVEADVPVRPLPGATASVTALIGSG 152
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
+ +F +VGFLP+ +R L + T IF+ PH+++ L + + + G R
Sbjct: 153 MPNHQFHYVGFLPRKEAARRAALTALRSTPATLIFFEAPHRIVAMLADLAAVLG-DRPAA 211
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQ-PKGEITVLVEG 301
+AR +TK EEF RG L E Q +G+ TV+V G
Sbjct: 212 LARNLTKDDEEFLRGRLNELTARLRVEQVVRGQFTVVVAG 251
>sp|Q2NAK3|RSMI_ERYLH Ribosomal RNA small subunit methyltransferase I OS=Erythrobacter
litoralis (strain HTCC2594) GN=rsmI PE=3 SV=2
Length = 281
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 133/222 (59%), Gaps = 2/222 (0%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF 137
PL PGLY+VATPIGNL DITLRA+ L+ + + EDTR +GKLL++ I L Y
Sbjct: 9 PLSPGLYIVATPIGNLGDITLRAIETLRRCDAVACEDTRMTGKLLKHLGISKSLWRYDDH 68
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
++++ + ++ + + + VAL+SDAGTP ISDPG L + D +PV IPGA A +A
Sbjct: 69 SDAKAREKIVAAISE-KAVALVSDAGTPLISDPGYRLVRDARDASLPVTTIPGACAAIAG 127
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
L+ SGL +D F F GFLP ++R E L A + IFY +LL+ L +
Sbjct: 128 LTLSGLPSDRFLFAGFLPVKDKARREMLEKLAPVDASLIFYETGPRLLKSLAAIDEML-P 186
Query: 258 SRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299
+R +ARE+TK+HEE RG + ++ PKGEI ++V
Sbjct: 187 NREISVARELTKLHEECRRGMGAGLMAHYQANPPKGEIVLMV 228
>sp|Q9JXE3|RSMI_NEIMB Ribosomal RNA small subunit methyltransferase I OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rsmI PE=3 SV=1
Length = 291
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 21/258 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL DITLRAL VL+ A++I +EDTR + +LL Y I+ L+S + NE Q
Sbjct: 18 LYVVATPIGNLADITLRALAVLQKADIICAEDTRVTAQLLSAYGIQGKLVSVREHNERQM 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ L G +VA +SDAGTP + DPG +LA+ + VVP+ GASA +AALS +G
Sbjct: 78 ADKIVGYLSDGMVVAQVSDAGTPAVCDPGAKLARRVREAGFKVVPVVGASAVMAALSVAG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQ---IFYVPPHKLLQFLEETSLLFGYSR 259
+ +F F GF+P + ER L A V+ + + PH++ L + + LF R
Sbjct: 138 VEGSDFYFNGFVPPKS---GERRKLFAKWVRAAFPIVMFETPHRIGATLADMAELF-PER 193
Query: 260 RCVIAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQLEK 317
R ++AREITK E F GT+GE + A S+ +Q +GE+ +++ P++D+ +
Sbjct: 194 RLMLAREITKTFETFLSGTVGEIQTALSADGNQSRGEMVLVL---------YPAQDEKHE 244
Query: 318 ELRGLISAGHNLSMVTTT 335
GL + N+ + T
Sbjct: 245 ---GLSESAQNIMKILTA 259
>sp|Q9JWJ7|RSMI_NEIMA Ribosomal RNA small subunit methyltransferase I OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rsmI PE=3 SV=1
Length = 291
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 152/258 (58%), Gaps = 21/258 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGNL DITLRAL VL+ A++I +EDTR + +LL Y I+ L+S + NE Q
Sbjct: 18 LYVVATPIGNLADITLRALAVLQKADIICAEDTRVTAQLLSAYGIQGKLVSVREHNERQM 77
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
++ L G +VA +SDAGTP + DPG +LA+ + VVP+ GASA +AALS +G
Sbjct: 78 ADKIVGYLSDGMVVAQVSDAGTPAVCDPGAKLARRVREVGFKVVPVVGASAVMAALSVAG 137
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQ---IFYVPPHKLLQFLEETSLLFGYSR 259
+A +F F GF+P + ER L A V+ + + PH++ L + + LF R
Sbjct: 138 VAGSDFYFNGFVPPKS---GERRKLFAKWVRVAFPVVMFETPHRIGATLADMAELF-PER 193
Query: 260 RCVIAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQLEK 317
R ++AREITK E F GT+GE + A ++ +Q +GE+ +++ P++D+ +
Sbjct: 194 RLMLAREITKTFETFLSGTVGEIQTALAADGNQSRGEMVLVL---------YPAQDEKHE 244
Query: 318 ELRGLISAGHNLSMVTTT 335
GL + N+ + T
Sbjct: 245 ---GLSESAQNIMKILTA 259
>sp|Q9A186|RSMI_STRP1 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M1 GN=rsmI PE=3 SV=1
Length = 287
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 147/256 (57%), Gaps = 2/256 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T +S+H+ N ++
Sbjct: 16 LYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIATKQISFHEHNAYEK 75
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+++ L G +A +SDAG P ISDPG +L K +D I VV +PGASA + AL ASG
Sbjct: 76 IPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALPGASAGITALIASG 135
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LA F GFLP+ A + + +TQ+FY P+++ L +G R+ V
Sbjct: 136 LAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYG-DRQVV 194
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG-KAICVVETPSEDQLEKELRG 321
+ RE+TK+ EE+ RG++ E KGE ++V G +A VE ++ L ++
Sbjct: 195 LVRELTKLFEEYQRGSISEILSYLEETPLKGECLLIVAGAQADSEVELTADVDLVSLVQK 254
Query: 322 LISAGHNLSMVTTTLV 337
I AG + T+
Sbjct: 255 EIQAGAKPNQAIKTIA 270
>sp|P0DF47|RSMI_STRPQ Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=rsmI PE=3 SV=1
Length = 287
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T +S+H+ N ++
Sbjct: 16 LYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIATKQISFHEHNAYEK 75
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+++ L G +A +SDAG P ISDPG +L K +D I VV +PGASA + AL ASG
Sbjct: 76 IPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDITVVALPGASAGITALIASG 135
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LA F GFLP+ A + + +TQ+FY P+++ L +G R+ V
Sbjct: 136 LAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYG-DRQVV 194
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304
+ RE+TK+ EE+ RG++ E KGE ++V G +
Sbjct: 195 LVRELTKLFEEYQRGSISEILSYLEETSLKGECLLIVAGAQV 236
>sp|P0DF46|RSMI_STRP3 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=rsmI PE=3 SV=1
Length = 287
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 1/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T +S+H+ N ++
Sbjct: 16 LYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIATKQISFHEHNAYEK 75
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+++ L G +A +SDAG P ISDPG +L K +D I VV +PGASA + AL ASG
Sbjct: 76 IPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDITVVALPGASAGITALIASG 135
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LA F GFLP+ A + + +TQ+FY P+++ L +G R+ V
Sbjct: 136 LAPQPHVFYGFLPRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYG-DRQVV 194
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304
+ RE+TK+ EE+ RG++ E KGE ++V G +
Sbjct: 195 LVRELTKLFEEYQRGSISEILSYLEETSLKGECLLIVAGAQV 236
>sp|Q5XDL7|RSMI_STRP6 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=rsmI PE=3 SV=1
Length = 287
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 1/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T +S+H+ N ++
Sbjct: 16 LYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIATKQISFHEHNSYEK 75
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+++ L G +A +SDAG P ISDPG +L K +D I VV +PGASA + AL ASG
Sbjct: 76 IPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALPGASAGITALIASG 135
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LA F GFLP+ A + + +TQ+F P+++ L +G R+ V
Sbjct: 136 LAPQPHVFYGFLPRKAGQQKAFFEDKHHYTETQMFCESPYRIKDTLTNMLACYG-DRQVV 194
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304
+ RE+TK+ EE+ RG++ E KGE ++V G +
Sbjct: 195 LVRELTKLFEEYQRGSISEILSYLEETPLKGECLLIVAGAQV 236
>sp|Q9ZCJ3|RSMI_RICPR Ribosomal RNA small subunit methyltransferase I OS=Rickettsia
prowazekii (strain Madrid E) GN=rsmI PE=3 SV=1
Length = 280
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 1/223 (0%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
L+ GLY+V+TPIGN EDITLRA+ LK++++IL EDTR S KLL + I T L Y+ +
Sbjct: 3 LKSGLYIVSTPIGNFEDITLRAISTLKNSDIILCEDTRISQKLLAKHYIHTKLQIYNDHS 62
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
+ + + +++ +K G +V+LISDAGTP ISDPG +L + + + +PG S+ + AL
Sbjct: 63 DYKDREYIISLIKAGNVVSLISDAGTPLISDPGYKLVRDLRNLNYYIEVVPGVSSPITAL 122
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258
+ S L TD F F GFLPK S+ + N T IF+ +L+ L +FG
Sbjct: 123 TLSSLPTDRFLFSGFLPKTIESKKKIFAELVNLKATLIFFDTASRLINTLLLAKEIFGNR 182
Query: 259 RRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301
CV ARE+TK+++E G + E E + ++ KGEI +L+ G
Sbjct: 183 EICV-ARELTKIYQETKTGDIDEIIEFYKNNILKGEIVLLISG 224
>sp|Q8P2A6|RSMI_STRP8 Ribosomal RNA small subunit methyltransferase I OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=rsmI PE=3
SV=1
Length = 287
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 132/222 (59%), Gaps = 1/222 (0%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LYLV TPIGNL+D+T RA+ LK + I +EDTR++G LL++++I T +S+H+ N ++
Sbjct: 16 LYLVPTPIGNLQDMTFRAVATLKEVDFICAEDTRNTGLLLKHFDIATKQISFHEHNAYEK 75
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+++ L G +A +SDAG P ISDPG +L K +D I VV +PGASA + AL ASG
Sbjct: 76 IPDLIDLLISGRSLAQVSDAGMPSISDPGHDLVKAAIDSDIAVVALPGASAGITALIASG 135
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
LA F GFL + A + + +TQ+FY P+++ L +G R+ V
Sbjct: 136 LAPQPHVFYGFLSRKAGQQKAFFEDKHHYPETQMFYESPYRIKDTLTNMLACYG-DRQVV 194
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304
+ RE+TK+ EE+ RG++ E KGE ++V G +
Sbjct: 195 LVRELTKLFEEYQRGSISEILSYLEETSLKGECLLIVAGAQV 236
>sp|B4U6H0|RSMI_HYDS0 Ribosomal RNA small subunit methyltransferase I OS=Hydrogenobaculum
sp. (strain Y04AAS1) GN=rsmI PE=3 SV=1
Length = 230
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 136/219 (62%), Gaps = 4/219 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQ 141
LY+V TPIGNLEDIT+RA+ +LKS I EDTR LL++YNI+ LLSY+ E+
Sbjct: 3 LYVVPTPIGNLEDITIRAINILKSVKFIACEDTRRIQILLKHYNIEGKTLLSYYHPKEAI 62
Query: 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201
+ + +++ +++ E VAL+SDAGTP ISDPG +L C+ E IPV +PG A + AL S
Sbjct: 63 QIRKIISLIRKDEDVALVSDAGTPSISDPGFKLINACIKEDIPVEVLPGPCALITALVGS 122
Query: 202 GLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRC 261
GL T F F+GF P+ ++ + + S++ + I Y P ++L LE S + +
Sbjct: 123 GLPTHSFMFLGFAPRKSQESFYKEVFSSD-TGSYILYESPQRILDTLELISHIEP-NITV 180
Query: 262 VIAREITKMHEEFWRGTLGEAKEAFSS-HQPKGEITVLV 299
IARE+TKMHEE+ RG + + E + KGEI +++
Sbjct: 181 AIARELTKMHEEYIRGNIKDVIEELKKRNNIKGEIVLVL 219
>sp|C5J6H5|RSMI_MYCCR Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)
GN=rsmI PE=3 SV=1
Length = 238
Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 5/216 (2%)
Query: 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFNESQRE 143
LV+TPIGNL+DI+LRAL L+ +++IL EDTR S KLL +Y I L+SYHKFNE +
Sbjct: 7 LVSTPIGNLKDISLRALDTLRDSDIILCEDTRVSQKLLNHYQINNKKLISYHKFNEYKML 66
Query: 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL 203
+ N L QG + LISDAG P ISDPG L + I V IPGA+A ++A + SG
Sbjct: 67 DLIDNYLNQGLQICLISDAGVPTISDPGQILVNWAHENDIEVDIIPGANALISAFALSGY 126
Query: 204 ATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVI 263
F F GFL + +++ L +V + IFY+ P KL+ LE L+G +
Sbjct: 127 KG-SFYFGGFLDSKKQQIIKQISLLDPKV-SYIFYISPFKLVYTLEIIRDLYGEEIDIFL 184
Query: 264 AREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299
+EITK++++++RGT + S+ PKGE T+++
Sbjct: 185 IKEITKIYQKYYRGTPDKILNNLSA--PKGEFTIIL 218
>sp|Q661J3|RSMI_BORGA Ribosomal RNA small subunit methyltransferase I OS=Borrelia garinii
(strain PBi) GN=rsmI PE=3 SV=1
Length = 224
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 126/219 (57%), Gaps = 3/219 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNLEDIT RA+ VLKS NVI +EDTR + KLL Y I ++S + E+++
Sbjct: 2 LYIVGTPIGNLEDITYRAVDVLKSVNVIFAEDTRVTIKLLSRYKINKKMISCNAVTENKK 61
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ +L+ L +G+ VA +SDAGTPG+SDPG+ L E V PIPG S+F +S +
Sbjct: 62 IRLLLDYLAKGDSVAFVSDAGTPGLSDPGSLLVAAAFREGYKVCPIPGVSSFNTIVSVNP 121
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
F GFLP R +++ + H+LL+ L E S + + +
Sbjct: 122 FRDKSVLFEGFLPNKGLKRFKKIAELYKRGDAFVLLESGHRLLKLLVEISSV-SLDAKIL 180
Query: 263 IAREITKMHEEFWRGTLGEAKEAFSSHQP--KGEITVLV 299
I RE+TK++EE+ G E K+ F S + KGE T+LV
Sbjct: 181 IGREMTKIYEEYQIGKPLELKKYFESSKEKVKGEFTILV 219
>sp|Q89AY5|RSMI_BUCBP Ribosomal RNA small subunit methyltransferase I OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=rsmI PE=3 SV=1
Length = 292
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 131/223 (58%), Gaps = 6/223 (2%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+V TPIGNL DI+ RA+ +L+ ++I +E+ HS LL++YNI T S +K NE +
Sbjct: 12 LYIVPTPIGNLNDISYRAINILQHVDLIAAENIFHSQILLKHYNILTRTTSLNKDNEKIK 71
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+T++ +LK + +ALIS++GTP I+DPG L C + I +VPIPG A + AL ASG
Sbjct: 72 SKTLIIQLKNKKNIALISNSGTPLINDPGFYLINECYNHIIKIVPIPGPCAAITALIASG 131
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCV 262
L + F + GFLP SR + L E +T IF+ H++++ + + + G R
Sbjct: 132 LPANRFCYEGFLPSKQNSRCKILNQIKEEQRTIIFFEVTHRIIESITDIINILGPKRIIT 191
Query: 263 IAREITKMHEEFWRGT----LGEAKEAFSSHQPKGEITVLVEG 301
A+E+TK E + T L K+ ++ KGEI +++ G
Sbjct: 192 FAKELTKKWEIIQKNTSYNILIWLKQNYT--YKKGEIVIIISG 232
>sp|Q98RF5|RSMI_MYCPU Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
pulmonis (strain UAB CTIP) GN=rsmI PE=3 SV=1
Length = 222
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+Y+V TPIGNL DITLRAL LK + I EDTR S LL +Y I PL SYHKFNE +
Sbjct: 4 IYIVGTPIGNLSDITLRALETLKKVDYIACEDTRVSKILLNHYQINKPLFSYHKFNEKSK 63
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ ++ G VALISD+G P ISDPG L + + I + IPG SAF A S
Sbjct: 64 LNYIFELVESGSDVALISDSGMPVISDPGFLLIREAKKKNIDLEVIPGVSAFSMAFVKSS 123
Query: 203 LATDEFTFVGFL-PKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRC 261
F+F+GFL K + + E LSA + I YV +KL+Q L++ +FG +
Sbjct: 124 FPL-PFSFLGFLNDKTGKRKNELKKLSAG--ISYISYVSKYKLIQTLKDLKEVFGLNVEV 180
Query: 262 VIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVL 298
+ RE+TK E + GT+ E + KGE T++
Sbjct: 181 FLTRELTKKFENDYTGTIDEIIDQL-GESIKGEFTLI 216
>sp|P0A640|RSMI_MYCTU Ribosomal RNA small subunit methyltransferase I OS=Mycobacterium
tuberculosis GN=rsmI PE=3 SV=1
Length = 285
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 3/223 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP--LLSYHKFNES 140
L L ATP+G D + R L +A+V+ +EDTR KL + +I+ ++S E+
Sbjct: 6 LLLGATPLGQPSDASPRLAAALATADVVAAEDTRRVRKLAKALDIRIGGRVVSLFDRVEA 65
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
R +L+ + G V ++SDAGTP ISDPG L C+D + V +PG SA AL
Sbjct: 66 LRVTALLDAINNGATVLVVSDAGTPVISDPGYRLVAACIDAGVSVTCLPGPSAVTTALVM 125
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL ++F F GF P+ +R L A E +T +F+ P +L L + G +R
Sbjct: 126 SGLPAEKFCFEGFAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGARP 185
Query: 261 CVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303
I RE+TK+HEE RG+L E +++ GEITV+V G A
Sbjct: 186 AAICRELTKVHEEVVRGSLDELA-IWAAGGVLGEITVVVAGAA 227
>sp|P0A641|RSMI_MYCBO Ribosomal RNA small subunit methyltransferase I OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=rsmI PE=3
SV=1
Length = 285
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 3/223 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP--LLSYHKFNES 140
L L ATP+G D + R L +A+V+ +EDTR KL + +I+ ++S E+
Sbjct: 6 LLLGATPLGQPSDASPRLAAALATADVVAAEDTRRVRKLAKALDIRIGGRVVSLFDRVEA 65
Query: 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
R +L+ + G V ++SDAGTP ISDPG L C+D + V +PG SA AL
Sbjct: 66 LRVTALLDAINNGATVLVVSDAGTPVISDPGYRLVAACIDAGVSVTCLPGPSAVTTALVM 125
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRR 260
SGL ++F F GF P+ +R L A E +T +F+ P +L L + G +R
Sbjct: 126 SGLPAEKFCFEGFAPRKGAARRAWLAELAEERRTCVFFESPRRLAACLNDAVEQLGGARP 185
Query: 261 CVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303
I RE+TK+HEE RG+L E +++ GEITV+V G A
Sbjct: 186 AAICRELTKVHEEVVRGSLDELA-IWAAGGVLGEITVVVAGAA 227
>sp|B0SPB4|RSMI_LEPBP Ribosomal RNA small subunit methyltransferase I OS=Leptospira
biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 /
Paris) GN=rsmI PE=3 SV=1
Length = 240
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY+VATPIGN+ DITLRA+ VLK +++L E + + L I TP+L+ +K +
Sbjct: 10 LYVVATPIGNMGDITLRAIDVLKEVDLVLCESAKETKSLFHKLGISTPVLALYKDHSETP 69
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
VL +LKQG+ +AL+SDAGTPG+SDPG+++ + + I +VP+PGASA A LS SG
Sbjct: 70 FANVLEQLKQGKSMALVSDAGTPGVSDPGSQMVRTARENGISIVPVPGASALTALLSVSG 129
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQI-FYVPPHKLLQFLEETSLLFGYSRRC 261
+ F+GFL + S+ R + A E++ I FY HKL + LF +
Sbjct: 130 FQVNPTYFLGFLSEKP-SKKRRELERAREIEGLIVFYESVHKLPRLYPILEELFPET-EV 187
Query: 262 VIAREITKMHEE 273
++ RE+TK EE
Sbjct: 188 LMGRELTKAFEE 199
>sp|O83940|RSMI_TREPA Ribosomal RNA small subunit methyltransferase I OS=Treponema
pallidum (strain Nichols) GN=rsmI PE=3 SV=1
Length = 274
Score = 135 bits (341), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 128/270 (47%), Gaps = 51/270 (18%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQ- 141
LY+VATPIGNL DITLRAL VL++ +V+ EDTR + LL ++ I L+S NE+Q
Sbjct: 4 LYVVATPIGNLADITLRALDVLRTVDVVACEDTRRTRALLSHFGIHKRLVSCRAHNEAQA 63
Query: 142 -----------------------REQTVLNRLKQGEIV---------------------- 156
R+ R + GE V
Sbjct: 64 ARRLIHFLSTPISAFLSPEKGRGRQSARRTRARPGETVGTAALQLAAEATGEQEVCGSPH 123
Query: 157 ---ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGF 213
A +SDAGTPG+SDPG L + D VVPIPGASA LS +G+ F GF
Sbjct: 124 AQVAYVSDAGTPGVSDPGAVLVRAVRDAGHTVVPIPGASALTTLLSVAGVRDKTVLFEGF 183
Query: 214 LPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEE 273
L H R RL+ + + Y P+++ + LE+ + S + V+ RE+TK+HEE
Sbjct: 184 LSPHPGRRRARLVQLCAQRVAFVLYESPYRVQKLLEDLVAVAPES-QVVLGRELTKVHEE 242
Query: 274 FWRGTLGEAKEAFSSH-QPKGEITVLVEGK 302
GT E+F + + +GE +LV +
Sbjct: 243 LCVGTALRVMESFCARTRVRGECVLLVSAE 272
>sp|B5Y7N9|RSMI_COPPD Ribosomal RNA small subunit methyltransferase I
OS=Coprothermobacter proteolyticus (strain ATCC 35245 /
DSM 5265 / BT) GN=rsmI PE=3 SV=1
Length = 219
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 123/223 (55%), Gaps = 18/223 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+YLV TP+GNLEDITLRA+RVL A+V+ E + KLL + IK PL+ + + +
Sbjct: 2 IYLVGTPLGNLEDITLRAIRVLGEADVVACESKERALKLLSHLQIKKPLIYLREASRASD 61
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
+ ++ KQG+ VA+ +DAG PGISDPG L + + IP +PG SA +++ SG
Sbjct: 62 VKRIIELHKQGKTVAVTTDAGMPGISDPGAYLVRELSAQGIPFTVVPGPSALCMSITVSG 121
Query: 203 LATDEFTFVGFLP-KHARSRTE-RLMLSANEVKTQIFYVPPH---KLLQFLEETSLLFGY 257
L + + F+GFLP K + R E L N + Y PH KLL L E
Sbjct: 122 L-EEPWAFLGFLPLKEGKRRRELEKFLPLN--IGLVIYEGPHRVGKLLSLLNELC----P 174
Query: 258 SRRCVIAREITKMHEEFWRGTLGE-AKEAFSSHQPKGEITVLV 299
R+ + RE+TK+HEE G E K+++ KGE V+V
Sbjct: 175 QRKVALLRELTKLHEEVQVGYPHELIKDSY-----KGEFVVVV 212
>sp|P56204|RSMI_HELPY Ribosomal RNA small subunit methyltransferase I OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=rsmI PE=3 SV=1
Length = 287
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 128/243 (52%), Gaps = 23/243 (9%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQ-----------YYNIKTPL 131
LY + TPIGNL DITLRAL VL+ V L EDTR S +LL + NI T
Sbjct: 2 LYFLPTPIGNLADITLRALEVLERCEVFLCEDTRVSKRLLHLLAQNPIISHSFPNIATKK 61
Query: 132 LSYHKFNESQREQTVLNRLKQG---EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
+ F+ S +Q LN++K + +A++SDAG P +SDPG LA + I +
Sbjct: 62 REFIAFH-SHNDQEFLNQIKPSFFDKEIAVMSDAGMPSLSDPGMSLAAYALKHNIQYDVL 120
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERL-----MLSANEVKTQ-IFYVPPH 242
PGA+A A ASG F + GFLP ++ R ++ L+ E KT +FY PH
Sbjct: 121 PGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPH 180
Query: 243 KLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGE-ITVLVEG 301
+LL+ L++ + L A+E+TK+H++++ G + + E +GE + VL+
Sbjct: 181 RLLETLKDLNDL-AKGMHLFAAKELTKLHQQYYLGEVSQIIERLQQSTIQGEWVLVLLNE 239
Query: 302 KAI 304
K I
Sbjct: 240 KKI 242
>sp|Q9ZLS8|RSMI_HELPJ Ribosomal RNA small subunit methyltransferase I OS=Helicobacter
pylori (strain J99) GN=rsmI PE=3 SV=1
Length = 289
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN---- 138
LY + TPIGNL DITLR L VL+ V L EDTR S +LL K P++S+ N
Sbjct: 2 LYFLPTPIGNLADITLRTLEVLERCEVFLCEDTRVSKRLLHLL-AKNPIISHSFPNIAAK 60
Query: 139 -------ESQREQTVLNRLKQG---EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
S +Q LN+++ + +A++SDAG P +SDPG L + + +
Sbjct: 61 KREFIAFHSHNDQEFLNQIEPSFFDKEIAVMSDAGMPSLSDPGMSLVAYALKHNLQYDVL 120
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLM-----LSANEVKTQ-IFYVPPH 242
PGA+A A ASG F + GFLP ++ R R++ L+ E KT +FY PH
Sbjct: 121 PGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLRIIKILNALAYLEEKTPVVFYESPH 180
Query: 243 KLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGE-ITVLVEG 301
+LL+ L + + L A+E+TK+H++++ G + + +GE + VL+
Sbjct: 181 RLLETLRDLNDL-AQGMHLFAAKELTKLHQQYYLGEISQIMTQLQKSNIQGEWVLVLLNE 239
Query: 302 KAI 304
K I
Sbjct: 240 KKI 242
>sp|P47302|RSMI_MYCGE Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=rsmI PE=3 SV=1
Length = 277
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 11/250 (4%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI---KTPLLSYHKFNE 139
L +VATPIGN+++I+ RA + L+ V+ ED+R + K+L NI + + + F E
Sbjct: 4 LKVVATPIGNIQEISERAKKALQDCEVLFCEDSRVTRKMLDLLNIDCKQKKFVINNSFKE 63
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV--DEKIPVVPIPGASAFVAA 197
Q T L+SDAG P +SDPG E+ + +++I + I G SA +
Sbjct: 64 KQN-LTFAEEFITNFKCCLVSDAGYPSLSDPGNEMINWIISKNKEIRIEVINGPSALMCG 122
Query: 198 LSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257
L SG T F+GFL L N+ T +F+ H+L LE +F
Sbjct: 123 LITSGFKTTPLLFLGFLSHKQNQLKNYLSTYQNQKSTIVFFEAVHRLENTLETVKNVFK- 181
Query: 258 SRRCVIAREITKMHE-EFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLE 316
+ I RE+TK+HE +W T ++ KGE ++++ + I S L
Sbjct: 182 NNDVFIGRELTKLHESHYWFNT---SENTLPDITLKGEFVIVIDNQNINHQTLSSNQYLV 238
Query: 317 KELRGLISAG 326
E++ L+ G
Sbjct: 239 YEIKKLMDIG 248
>sp|P75046|RSMI_MYCPN Ribosomal RNA small subunit methyltransferase I OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=rsmI PE=3 SV=1
Length = 276
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 12/252 (4%)
Query: 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI---KTPLLSYHKF 137
P L ++ATPIGN+E+++ R L V+ EDTR + KLL I + ++F
Sbjct: 2 PALKVIATPIGNIEEVSPRVKAALTKCEVLFCEDTRVTKKLLGLLGIDFSNKQFIINNEF 61
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASAFV 195
E Q V N + Q L+SDAG P +SDPG L + + +I + I G SA V
Sbjct: 62 KEKQNLSKVANLIHQYH-CGLVSDAGYPSVSDPGHILVEYVRTQLPQIAIEVINGPSALV 120
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
L SG F+GFL T+ L N T + + H+L Q LE +F
Sbjct: 121 CGLVTSGFPESPLLFLGFLDHKPTQVTQTLKHYQNFQGTIVLFEAVHRLQQTLEVIQTVF 180
Query: 256 GYSRRCVIAREITKMHE-EFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQ 314
+ + RE+TK+HE +W T + KGE +++ V S+
Sbjct: 181 S-NTEVFVGRELTKLHESHYWFNTSAPLPDI----TLKGEFVIVINNHHTQPVGQYSDQL 235
Query: 315 LEKELRGLISAG 326
L++E+ L+ G
Sbjct: 236 LKQEITQLVQMG 247
>sp|Q053G0|RSMI_LEPBL Ribosomal RNA small subunit methyltransferase I OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=rsmI PE=3 SV=1
Length = 253
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 4/224 (1%)
Query: 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFN 138
L+ L LV+ +GN D+T RA +L+ ++++ E+ R + LL+ +I L ++
Sbjct: 5 LQGALVLVSVSLGNFGDLTARARHLLEYCDILIGEEFRTTSTLLKSLSISKQFLLCNEHT 64
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198
+ +++ + + L+SDAGTPGI DPG EL + V PG AF AAL
Sbjct: 65 TPEEIRSLGQIVVDSGLTVLVSDAGTPGIEDPGRELVGEVLRRGGRVQSAPGPIAFGAAL 124
Query: 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHK---LLQFLEETSLLF 255
S SG T FTF GFL + + R L T +FY P++ +L+ L+ +
Sbjct: 125 SISGFKTSPFTFCGFLSRDSSERKLELSRYLKPGHTVVFYETPYRYKAVLRDLDSVLIET 184
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299
G R ++T E +RG LGE + + PKG ++V
Sbjct: 185 GEDRAIFFCLDLTLDSEFQFRGKLGELLKVLDT-LPKGNPVIVV 227
>sp|A0RMQ7|RSMI_CAMFF Ribosomal RNA small subunit methyltransferase I OS=Campylobacter
fetus subsp. fetus (strain 82-40) GN=rsmI PE=3 SV=1
Length = 271
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL-------LSYH 135
LY + TPIGNL+DI+ R L VL+ +I+ EDTR + L+ N K L S H
Sbjct: 2 LYFLPTPIGNLDDISKRCLDVLELCEIIICEDTRVTKSLITLLNAKFGLQISPKEFYSLH 61
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
NE + +I SDAG P ISDPG L K I + GA+A +
Sbjct: 62 THNEKDFFDKFDKVRLETKICIYASDAGMPCISDPGISLVKFAQQNSIKYEVLSGANALL 121
Query: 196 AALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLF 255
A +ASG+ EFTF+GFLP + R + + N + I Y P ++L ++ S F
Sbjct: 122 LAAAASGIIEKEFTFLGFLPNLGKERAIAIQNALNSLYPVIIYESPKRILSLIKSIS-EF 180
Query: 256 GYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303
R I +E TK E ++ + + GE V+++ A
Sbjct: 181 DPLREVFIIKEATKKFEAKFKNSATNLLTQLENSNLNGEWCVVIDRSA 228
>sp|Q0VQ05|CYSG_ALCBS Siroheme synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=cysG PE=3 SV=1
Length = 461
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY-------H 135
+YLV G+ + +T RALR+L+ A+V+L + R GK + + L Y H
Sbjct: 220 VYLVGAGPGDPDLLTFRALRLLQKADVVLYD--RLVGKGIVDLARRDAELVYVGKARDKH 277
Query: 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195
+ + +++ KQG+ V + G P I G E L V E I +PG +A
Sbjct: 278 ALPQDNINELLVHYAKQGKKVCRLK-GGDPFIFGRGGEEIDLIVAEGIDFQVVPGITAAS 336
Query: 196 AALSASGLA---TDEFTFVGFLPKHARSRTERLMLS--ANEVKTQIFYVPPHKLLQFLEE 250
S +G+ D V F+ H + + L +E +T +FY+ L+ E
Sbjct: 337 GCASYAGIPLTHRDHAQSVRFVTGHRKDGSVDLDWKHLVSETETVVFYM---GLVGLREI 393
Query: 251 TSLLFGYSRR-----CVIAREITKMHE 272
S L + R +++R T + E
Sbjct: 394 CSQLIAHGRGGDTPIALVSRGTTNLQE 420
>sp|Q21K21|CYSG_SACD2 Siroheme synthase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=cysG PE=3 SV=1
Length = 458
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILS---------EDTRHSGKLLQYYNIKTPLLS 133
+YLV G+ + +T +ALR+++ A V+L E TR + + Y K +
Sbjct: 218 VYLVGAGPGDPDLLTFKALRLMQQAEVVLYDRLVSEPILEMTRRDAERI-YVGKKR---A 273
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
H + + Q +L +QG+ V L G P I G E L + KIP +PG +A
Sbjct: 274 EHAVPQQKINQMLLELAQQGKRV-LRLKGGDPFIFGRGGEEIDLLAEHKIPFQVVPGITA 332
Query: 194 FVAALSASGLA---TDEFTFVGFLPKHARSRTERLMLS--ANEVKTQIFYV 239
S SG+ D V F+ H + E S ++ +T +FY+
Sbjct: 333 ASGCASYSGIPLTHRDYSQSVRFITGHLQEGKENFRWSEFVDKQQTLVFYM 383
>sp|O34744|SUMT_BACSU Uroporphyrinogen-III C-methyltransferase OS=Bacillus subtilis
(strain 168) GN=sumT PE=2 SV=1
Length = 257
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+Y+V G+ + +T++AL+ ++ A+VIL D + ++LQY + L+ +H
Sbjct: 4 VYIVGAGPGDPDLLTIKALKAIEKADVILY-DRLVNKEILQYAKEQADLIYCGKLPDFHT 62
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
+ + ++ ++G++V + G P + G E A+ + IP IPG ++ +A
Sbjct: 63 MKQETINRFLVKYAQKGKMVVRLK-GGDPFVFGRGGEEAECLSENGIPFEIIPGITSGIA 121
Query: 197 ALSASGLAT---DEFTFVGFLPKHARSR---TERLMLSANEVKTQIFYV 239
A + +G+ D + V F+ H + E+ A + T + Y+
Sbjct: 122 AAAYAGIPVTHRDAGSNVAFVTGHYKKEEDFEEKWKALATGIDTLVIYM 170
>sp|Q8TXC7|DPHB_METKA Diphthine synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324
/ JCM 9639 / NBRC 100938) GN=dphB PE=3 SV=1
Length = 263
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNE--- 139
LYLV + ++ D+TLRAL VL S ++L DT S + ++K L + E
Sbjct: 4 LYLVGGGLSDVRDLTLRALEVLASVELVLV-DTYTSVYDVSEGDLKRLLNGFGGDPEVRM 62
Query: 140 -SQR--EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
S+R E+ + + + VAL+S G P + L D V I G S F A
Sbjct: 63 CSRRDLEERFFDLCEGYDRVALLS-PGDPMAATTHVALVVEAADRGWDVEIINGVSVFTA 121
Query: 197 ALSASGLATDEFTFVGFLPKHARS 220
A S SGL F +P + RS
Sbjct: 122 APSKSGLEMYRFGRTATIPLNVRS 145
>sp|Q31GG8|CYSG_THICR Siroheme synthase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysG PE=3 SV=1
Length = 473
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+Y++ G+ + +T + LR+L+ A+VIL D + ++L+ + + +HK
Sbjct: 225 VYIIGAGPGDPDLMTFKGLRLLQQADVILY-DRLVAPEILEMGRREAERIYVGKKEKWHK 283
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
++ Q +++ +QG+ VA + G P I G E +L V +P +PG +A
Sbjct: 284 MDQKDINQMLVDLARQGKRVARLK-GGDPYIFGRGAEEVELLVQHDVPYQVVPGITA 339
>sp|Q2SJB7|CYSG_HAHCH Siroheme synthase OS=Hahella chejuensis (strain KCTC 2396) GN=cysG
PE=3 SV=1
Length = 469
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 25/194 (12%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSED---------TRHSGKLLQYYNIKTPLLS 133
+YLV G+ + +T RALR+++ A+V+L + R K + + S
Sbjct: 229 VYLVGAGPGDPDLLTFRALRLMRQADVVLYDRLVSPQILDLVRRDAKRINVGKAR----S 284
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
H + + ++ K+G+ V + G P I G E D +P +PG +A
Sbjct: 285 NHTLPQQEINAMLVELAKEGKRVLRLK-GGDPFIFGRGGEEIDQLADAGVPFQVVPGITA 343
Query: 194 FVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSL 253
+ SG +P R ++ + +K+ +P H+ +Q +
Sbjct: 344 ASGCAAYSG-----------IPLTHRDHSQSVRFVTGHLKSDTCDLPWHEFVQDNQTLVF 392
Query: 254 LFGYSRRCVIAREI 267
G +I+RE+
Sbjct: 393 YMGLVGLPIISREL 406
>sp|C3JY53|CYSG_PSEFS Siroheme synthase OS=Pseudomonas fluorescens (strain SBW25) GN=cysG
PE=3 SV=1
Length = 464
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 28/257 (10%)
Query: 67 NLILEQSSKRGPLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY 125
L++E+ + P PG +YLV G+ + +T RALR+++ A+V+L D + +L+
Sbjct: 201 RLLIEKVNGAPPYAPGEVYLVGAGPGDPDLLTFRALRLMQQADVVLY-DRLVAPAILELC 259
Query: 126 NIKTPLL------SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179
+ + H + Q Q +++ KQG+ V L G P I G E +
Sbjct: 260 RRDAERIYVGKRRADHAVPQDQINQQLVDLAKQGKRV-LRLKGGDPFIFGRGGEEIEELA 318
Query: 180 DEKIPVVPIPGASAFVAALSASGLA---TDEFTFVGFLPKHARSRTERLMLS--ANEVKT 234
IP +PG +A + +G+ D V F+ H ++ T L +T
Sbjct: 319 AHGIPFQVVPGITAASGCAAYAGIPLTHRDYAQSVRFITGHLKNGTSDLPWQDLVGPSQT 378
Query: 235 QIFYVPPHKLLQFLEETSLLFGYSRR----CVIAREITKMHEEFWRGTLGEAKEAFSSHQ 290
+FY+ L E+ L + R + ++ T ++ + GTL + + H+
Sbjct: 379 LVFYMGLIGLPIICEQ---LIKHGRAADTPAALIQQGTTSNQRVFTGTLADLPRMVAEHE 435
Query: 291 PK-------GEITVLVE 300
GE+ VL E
Sbjct: 436 VHAPTLVIVGEVVVLRE 452
>sp|P29928|SUMT_BACME Uroporphyrinogen-III C-methyltransferase OS=Bacillus megaterium
GN=cobA PE=3 SV=1
Length = 238
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 14/169 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL------SYHK 136
+YLV G+ + ITL+ L+ ++ A+VIL D + LL+Y ++ +YH
Sbjct: 4 VYLVGAGPGDPDLITLKGLKAIQQADVILY-DRLVNKDLLEYAKSDADIIYCGKLPNYHT 62
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
+ ++ K+G+IV + G P + G E A+ V + I +PG ++ +A
Sbjct: 63 LKQETINNFLVKFAKKGKIVTRLK-GGDPFVFGRGGEEAEALVQQGISFEIVPGITSGIA 121
Query: 197 ALSASGLA------TDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239
A + +G+ + F FV K ++ + A V T Y+
Sbjct: 122 AAAYAGIPVTHREYSASFAFVAGHRKDSKHDAIKWDSLAKGVDTLAIYM 170
>sp|Q3ILQ9|CYSG_PSEHT Siroheme synthase OS=Pseudoalteromonas haloplanktis (strain TAC
125) GN=cysG PE=3 SV=1
Length = 473
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 11/155 (7%)
Query: 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL------LS 133
E +Y+V G+ E +TL+AL++++ A+V++ D S ++++ L L
Sbjct: 214 EGEVYVVGAGPGDPELLTLKALQLMQQADVVVY-DYLVSDEIMELVRRDADLICVGKRLG 272
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
H + Q +++ KQG+ V I G P I G E ++ K+ +PG +A
Sbjct: 273 DHSVAQQDTNQMLVDLAKQGKKVCRIK-GGDPFIYGRGGEEVQVLAANKVNYQIVPGITA 331
Query: 194 FVAALSASGLA---TDEFTFVGFLPKHARSRTERL 225
+ +G+ D + F+ H + + L
Sbjct: 332 AAGCSAYAGIPLTHRDHAQAIQFVTGHCKKDGQEL 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,068,409
Number of Sequences: 539616
Number of extensions: 5171189
Number of successful extensions: 14148
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 14024
Number of HSP's gapped (non-prelim): 129
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)