Query 016688
Match_columns 384
No_of_seqs 282 out of 2356
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0313 Predicted methyltransf 100.0 1.1E-65 2.3E-70 489.8 30.4 269 78-354 2-270 (275)
2 PRK14994 SAM-dependent 16S rib 100.0 1.3E-60 2.9E-65 464.3 33.6 273 77-356 8-282 (287)
3 TIGR00096 probable S-adenosylm 100.0 4.4E-59 9.5E-64 450.6 30.8 268 82-355 1-271 (276)
4 PRK06136 uroporphyrin-III C-me 100.0 9.7E-38 2.1E-42 296.8 26.2 223 79-304 1-237 (249)
5 PRK15473 cbiF cobalt-precorrin 100.0 3.4E-37 7.3E-42 295.9 27.4 223 80-304 7-236 (257)
6 TIGR01469 cobA_cysG_Cterm urop 100.0 2.8E-37 6.1E-42 290.9 25.9 218 82-302 1-231 (236)
7 TIGR01465 cobM_cbiF precorrin- 100.0 7.8E-37 1.7E-41 286.9 26.5 217 83-304 1-227 (229)
8 PRK05765 precorrin-3B C17-meth 100.0 2.2E-36 4.7E-41 288.7 24.2 219 81-305 2-227 (246)
9 PLN02625 uroporphyrin-III C-me 100.0 6.5E-36 1.4E-40 287.9 26.8 221 78-304 12-249 (263)
10 COG2875 CobM Precorrin-4 methy 100.0 2.8E-36 6.1E-41 280.3 23.0 221 80-305 2-232 (254)
11 PRK15478 cbiH cobalt-precorrin 100.0 3.6E-36 7.7E-41 286.7 24.3 216 82-305 1-226 (241)
12 COG0007 CysG Uroporphyrinogen- 100.0 3.2E-34 6.9E-39 271.3 24.3 220 79-304 2-234 (244)
13 PF00590 TP_methylase: Tetrapy 100.0 1.2E-33 2.5E-38 260.5 20.7 199 82-283 1-210 (210)
14 COG1010 CobJ Precorrin-3B meth 100.0 5.4E-33 1.2E-37 259.1 23.1 219 79-305 1-230 (249)
15 PRK07168 bifunctional uroporph 100.0 1.3E-32 2.9E-37 284.4 25.5 219 79-304 1-235 (474)
16 TIGR01466 cobJ_cbiH precorrin- 100.0 3.7E-32 7.9E-37 257.4 23.9 214 83-304 1-224 (239)
17 TIGR01467 cobI_cbiL precorrin- 100.0 3.1E-32 6.7E-37 256.7 21.7 210 81-300 1-228 (230)
18 PRK05991 precorrin-3B C17-meth 100.0 6.6E-32 1.4E-36 258.3 23.8 216 79-305 1-231 (250)
19 PRK10637 cysG siroheme synthas 100.0 7E-32 1.5E-36 278.5 24.5 218 79-304 214-445 (457)
20 PRK05576 cobalt-precorrin-2 C( 100.0 7.2E-32 1.6E-36 254.5 20.8 209 80-302 1-226 (229)
21 PRK05787 cobalt-precorrin-6Y C 100.0 5.7E-31 1.2E-35 243.9 20.6 206 82-302 1-208 (210)
22 TIGR00522 dph5 diphthine synth 100.0 7.8E-30 1.7E-34 245.2 23.5 216 82-304 1-242 (257)
23 PRK05948 precorrin-2 methyltra 100.0 1.3E-29 2.8E-34 241.2 22.0 211 80-303 3-235 (238)
24 TIGR02467 CbiE precorrin-6y C5 100.0 5.5E-30 1.2E-34 237.4 18.9 192 85-285 1-194 (204)
25 PTZ00175 diphthine synthase; P 100.0 4.5E-29 9.7E-34 241.5 23.9 212 82-302 2-255 (270)
26 PRK04160 diphthine synthase; P 100.0 1.2E-28 2.6E-33 236.7 22.2 212 82-303 1-241 (258)
27 PRK05990 precorrin-2 C(20)-met 100.0 1.6E-28 3.5E-33 234.0 22.4 211 80-302 2-236 (241)
28 PRK08284 precorrin 6A synthase 100.0 2.5E-27 5.4E-32 227.4 21.0 194 81-287 2-229 (253)
29 COG2243 CobF Precorrin-2 methy 100.0 4.4E-27 9.6E-32 221.7 20.8 210 80-303 1-230 (234)
30 TIGR02434 CobF precorrin-6A sy 100.0 3.1E-27 6.7E-32 226.3 19.8 190 82-287 2-228 (249)
31 COG2241 CobL Precorrin-6B meth 100.0 2.7E-27 5.8E-32 220.4 18.8 204 82-301 1-206 (210)
32 KOG1527 Uroporphyrin III methy 99.9 4E-27 8.8E-32 229.4 14.1 218 81-304 256-486 (506)
33 COG1798 DPH5 Diphthamide biosy 99.9 4.5E-22 9.7E-27 187.4 20.1 212 82-304 1-241 (260)
34 KOG3123 Diphthine synthase [Tr 99.7 1.9E-16 4.1E-21 145.8 15.9 213 82-303 1-255 (272)
35 COG3956 Protein containing tet 99.2 3.5E-10 7.7E-15 111.2 15.7 196 79-286 1-211 (488)
36 PRK12723 flagellar biosynthesi 91.3 10 0.00022 39.2 16.2 172 152-342 205-385 (388)
37 PF03701 UPF0181: Uncharacteri 84.8 1.7 3.8E-05 31.9 4.0 27 314-340 15-41 (51)
38 TIGR00334 5S_RNA_mat_M5 ribonu 83.3 26 0.00056 32.3 12.0 118 222-358 38-162 (174)
39 PRK05114 hypothetical protein; 79.4 3.6 7.7E-05 31.1 4.1 27 314-340 15-41 (59)
40 COG0120 RpiA Ribose 5-phosphat 76.2 9 0.0002 36.7 6.9 107 85-204 23-155 (227)
41 COG3140 Uncharacterized protei 75.5 4.6 0.0001 30.2 3.7 28 314-341 15-42 (60)
42 PF05225 HTH_psq: helix-turn-h 71.7 9.1 0.0002 27.2 4.4 36 313-356 3-38 (45)
43 PF13309 HTH_22: HTH domain 64.5 15 0.00033 27.9 4.7 39 313-355 24-63 (64)
44 PF02796 HTH_7: Helix-turn-hel 63.5 14 0.00031 25.9 4.1 31 317-355 12-42 (45)
45 cd01524 RHOD_Pyr_redox Member 63.4 42 0.00091 26.3 7.3 83 97-191 2-84 (90)
46 PRK10017 colanic acid biosynth 55.4 69 0.0015 33.4 9.1 48 82-130 150-199 (426)
47 PF10104 Brr6_like_C_C: Di-sul 52.9 28 0.00062 30.5 5.0 29 348-376 101-129 (135)
48 TIGR03855 NAD_NadX aspartate d 52.5 57 0.0012 31.1 7.4 93 142-243 50-143 (229)
49 COG3088 CcmH Uncharacterized p 49.2 44 0.00096 30.1 5.6 53 313-371 64-117 (153)
50 PLN03034 phosphoglycerate kina 47.4 2.3E+02 0.0051 30.3 11.5 107 140-246 118-233 (481)
51 COG5085 Predicted membrane pro 46.7 62 0.0013 30.7 6.4 56 317-376 154-210 (230)
52 KOG4503 Uncharacterized conser 46.7 62 0.0013 30.7 6.4 56 317-376 154-210 (230)
53 cd04824 eu_ALAD_PBGS_cysteine_ 46.4 3.3E+02 0.0071 27.6 12.3 89 91-189 88-188 (320)
54 cd02067 B12-binding B12 bindin 43.8 1.7E+02 0.0037 24.1 8.3 101 84-191 2-111 (119)
55 PF06506 PrpR_N: Propionate ca 42.7 98 0.0021 27.8 7.1 105 91-204 17-145 (176)
56 COG3964 Predicted amidohydrola 42.7 72 0.0016 32.3 6.5 114 89-204 131-263 (386)
57 cd00384 ALAD_PBGS Porphobilino 42.6 68 0.0015 32.2 6.4 85 90-183 84-176 (314)
58 PLN02282 phosphoglycerate kina 42.5 3.6E+02 0.0079 28.1 11.9 152 140-304 43-203 (401)
59 PRK02261 methylaspartate mutas 42.2 2.3E+02 0.0051 24.6 10.0 111 80-192 2-122 (137)
60 PF00389 2-Hacid_dh: D-isomer 42.0 1.7E+02 0.0037 24.6 8.2 94 96-200 7-101 (133)
61 TIGR01819 F420_cofD LPPG:FO 2- 41.2 58 0.0012 32.6 5.6 67 94-178 170-238 (297)
62 PRK13384 delta-aminolevulinic 38.7 77 0.0017 32.0 6.1 88 87-183 91-186 (322)
63 TIGR00284 dihydropteroate synt 38.2 2.7E+02 0.0059 29.8 10.5 107 82-193 180-291 (499)
64 cd00423 Pterin_binding Pterin 38.1 1.9E+02 0.0042 27.7 8.7 82 82-166 39-133 (258)
65 PF13331 DUF4093: Domain of un 38.0 73 0.0016 25.9 4.9 37 320-357 34-74 (87)
66 PF03808 Glyco_tran_WecB: Glyc 37.8 3E+02 0.0065 24.6 9.6 126 102-237 1-133 (172)
67 COG1154 Dxs Deoxyxylulose-5-ph 37.5 69 0.0015 35.0 5.9 61 222-286 543-607 (627)
68 TIGR03365 Bsubt_queE 7-cyano-7 37.5 83 0.0018 29.9 6.0 43 153-196 72-114 (238)
69 PRK05443 polyphosphate kinase; 37.1 1.5E+02 0.0032 33.1 8.6 84 100-185 332-425 (691)
70 TIGR00238 KamA family protein. 36.1 2.2E+02 0.0048 28.5 9.1 40 140-180 144-187 (331)
71 TIGR03147 cyt_nit_nrfF cytochr 36.1 55 0.0012 28.7 4.1 47 313-365 60-107 (126)
72 PF02954 HTH_8: Bacterial regu 35.8 38 0.00083 23.3 2.5 25 324-356 16-40 (42)
73 PF04256 DUF434: Protein of un 35.5 70 0.0015 24.2 4.1 28 315-342 6-33 (58)
74 PF00162 PGK: Phosphoglycerate 34.8 3.3E+02 0.0072 28.2 10.2 105 140-244 34-153 (384)
75 cd00739 DHPS DHPS subgroup of 34.7 2.1E+02 0.0045 27.7 8.3 65 100-167 67-134 (257)
76 COG1712 Predicted dinucleotide 34.4 4.5E+02 0.0097 25.7 14.2 121 82-213 2-144 (255)
77 PRK09283 delta-aminolevulinic 34.2 97 0.0021 31.3 6.0 88 87-183 89-184 (323)
78 cd01523 RHOD_Lact_B Member of 33.7 2.4E+02 0.0051 22.2 9.0 84 101-190 7-93 (100)
79 PRK14719 bifunctional RNAse/5- 33.5 1.8E+02 0.004 29.7 8.1 73 107-186 24-99 (360)
80 PRK00073 pgk phosphoglycerate 32.6 5.5E+02 0.012 26.7 11.3 105 140-245 36-150 (389)
81 TIGR02495 NrdG2 anaerobic ribo 32.3 1.1E+02 0.0025 27.3 5.8 36 156-192 65-100 (191)
82 PRK07239 bifunctional uroporph 32.3 2.1E+02 0.0046 28.9 8.3 84 102-189 94-177 (381)
83 TIGR00715 precor6x_red precorr 32.2 4.8E+02 0.01 25.3 10.5 28 182-210 152-179 (256)
84 COG0034 PurF Glutamine phospho 31.1 1.9E+02 0.0041 30.8 7.7 59 270-336 354-418 (470)
85 COG1086 Predicted nucleoside-d 30.7 7.3E+02 0.016 27.3 12.1 101 80-196 116-218 (588)
86 COG0602 NrdG Organic radical a 30.6 1.2E+02 0.0026 28.5 5.8 48 142-190 57-107 (212)
87 COG2964 Uncharacterized protei 30.4 86 0.0019 30.0 4.7 36 317-356 177-213 (220)
88 COG1737 RpiR Transcriptional r 30.2 4.6E+02 0.0099 25.4 10.0 94 140-240 117-212 (281)
89 PF05402 PqqD: Coenzyme PQQ sy 29.6 1.8E+02 0.0039 21.5 5.6 33 319-355 22-54 (68)
90 COG4810 EutS Ethanolamine util 29.4 2.1E+02 0.0046 24.2 6.3 98 144-264 13-116 (121)
91 cd04823 ALAD_PBGS_aspartate_ri 29.4 1.1E+02 0.0025 30.8 5.6 84 91-183 90-181 (320)
92 TIGR02329 propionate_PrpR prop 28.9 6.1E+02 0.013 27.3 11.4 105 91-204 37-165 (526)
93 PRK10144 formate-dependent nit 28.3 85 0.0018 27.5 4.0 47 313-365 60-107 (126)
94 COG2243 CobF Precorrin-2 methy 27.7 21 0.00046 34.4 0.1 54 1-54 173-228 (234)
95 PRK13606 LPPG:FO 2-phospho-L-l 26.9 1.4E+02 0.0031 29.9 5.8 68 94-178 173-241 (303)
96 PLN02335 anthranilate synthase 26.9 80 0.0017 29.8 3.9 40 146-190 11-50 (222)
97 COG0391 Uncharacterized conser 26.4 5.3E+02 0.011 26.2 9.7 32 82-116 168-200 (323)
98 cd01454 vWA_norD_type norD typ 26.4 2.1E+02 0.0045 25.2 6.3 16 153-169 104-119 (174)
99 PRK05234 mgsA methylglyoxal sy 26.1 2.3E+02 0.005 24.9 6.5 92 102-200 28-125 (142)
100 PRK08535 translation initiatio 25.9 3.1E+02 0.0067 27.3 8.1 64 141-212 132-195 (310)
101 TIGR00511 ribulose_e2b2 ribose 25.8 3.2E+02 0.0069 27.1 8.1 63 142-212 128-190 (301)
102 PRK09456 ?-D-glucose-1-phospha 25.7 4.9E+02 0.011 23.3 9.3 56 188-250 141-196 (199)
103 cd05013 SIS_RpiR RpiR-like pro 24.9 3.8E+02 0.0082 21.7 8.5 84 99-188 5-93 (139)
104 PF13936 HTH_38: Helix-turn-he 24.4 1E+02 0.0022 21.5 3.1 30 318-355 12-41 (44)
105 PRK01415 hypothetical protein; 23.9 5.4E+02 0.012 24.9 9.1 119 85-211 96-226 (247)
106 COG3980 spsG Spore coat polysa 23.7 4E+02 0.0087 26.8 8.1 77 50-130 131-211 (318)
107 PF09822 ABC_transp_aux: ABC-t 23.3 6.5E+02 0.014 23.9 10.2 92 139-242 131-235 (271)
108 PRK00421 murC UDP-N-acetylmura 23.2 6E+02 0.013 26.3 10.0 36 141-179 422-457 (461)
109 COG0796 MurI Glutamate racemas 23.1 7.4E+02 0.016 24.5 13.8 98 81-202 6-111 (269)
110 PRK13303 L-aspartate dehydroge 23.1 2.3E+02 0.005 27.3 6.4 71 142-213 74-145 (265)
111 PRK13962 bifunctional phosphog 22.9 1.1E+03 0.023 26.4 12.0 106 140-245 39-154 (645)
112 PF04392 ABC_sub_bind: ABC tra 22.8 3E+02 0.0065 26.5 7.2 45 142-186 120-164 (294)
113 cd01965 Nitrogenase_MoFe_beta_ 22.4 7.6E+02 0.016 25.4 10.5 36 154-191 156-191 (428)
114 TIGR01761 thiaz-red thiazoliny 22.0 2.8E+02 0.0061 28.1 7.0 89 81-187 4-95 (343)
115 COG1597 LCB5 Sphingosine kinas 21.9 4.8E+02 0.01 25.8 8.5 52 149-206 54-106 (301)
116 PF13090 PP_kinase_C: Polyphos 21.5 3.4E+02 0.0073 27.9 7.3 59 101-160 3-70 (352)
117 PRK12726 flagellar biosynthesi 21.4 9.6E+02 0.021 25.2 16.0 142 150-304 231-381 (407)
118 COG1497 Predicted transcriptio 21.4 5.1E+02 0.011 25.4 8.1 97 78-188 155-255 (260)
119 PF13651 EcoRI_methylase: Aden 21.2 2.5E+02 0.0055 28.5 6.3 76 96-173 125-203 (336)
120 COG0113 HemB Delta-aminolevuli 21.1 3.5E+02 0.0075 27.4 7.1 94 82-184 77-190 (330)
121 PRK05703 flhF flagellar biosyn 20.9 9.6E+02 0.021 25.0 14.9 138 151-304 249-396 (424)
122 cd04890 ACT_AK-like_1 ACT doma 20.6 1.9E+02 0.004 20.8 4.1 29 161-189 7-35 (62)
123 PF00781 DAGK_cat: Diacylglyce 20.5 2.3E+02 0.005 23.7 5.3 51 148-204 49-103 (130)
124 TIGR02247 HAD-1A3-hyp Epoxide 20.5 6.2E+02 0.013 22.6 9.8 56 188-250 152-207 (211)
125 COG1504 Uncharacterized conser 20.3 4E+02 0.0086 23.0 6.4 81 106-194 20-101 (121)
126 PF04393 DUF535: Protein of un 20.3 3E+02 0.0065 27.1 6.7 34 325-358 180-220 (288)
127 COG3636 Predicted transcriptio 20.2 83 0.0018 26.4 2.3 20 334-357 53-72 (100)
128 PRK12562 ornithine carbamoyltr 20.1 7.7E+02 0.017 24.9 9.7 55 107-166 101-166 (334)
129 PF04055 Radical_SAM: Radical 20.1 2E+02 0.0043 23.8 4.8 41 140-181 31-72 (166)
130 cd02071 MM_CoA_mut_B12_BD meth 20.0 5.2E+02 0.011 21.6 10.1 102 84-192 2-112 (122)
No 1
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=100.00 E-value=1.1e-65 Score=489.84 Aligned_cols=269 Identities=47% Similarity=0.675 Sum_probs=250.3
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEE
Q 016688 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (384)
Q Consensus 78 ~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (384)
.++|+||+|+|||||++|||+||+++|++||+|+|||||++++||++|+++.+++++|+||+++....+++.+++|++||
T Consensus 2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va 81 (275)
T COG0313 2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA 81 (275)
T ss_pred CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEE
Q 016688 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (384)
Q Consensus 158 llSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVl 237 (384)
+|||||+|+|+|||+.||++|+++||+|+++||+||+++|++.||+|.++|+|.||||.+.++|.+.++.+++...|+||
T Consensus 82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If 161 (275)
T COG0313 82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF 161 (275)
T ss_pred EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcccCCCCChHHHHH
Q 016688 238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETPSEDQLEK 317 (384)
Q Consensus 238 ye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~~~~~~~~~~~~~ 317 (384)
||+|||+.++|+++.+.+|.+++++|||||||.+|++++|++.++.+++.+...|||+|+||.|+.... .+.....
T Consensus 162 yEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~~KGE~vlvv~~~~~~~----~~~~~~~ 237 (275)
T COG0313 162 YESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDTLKGEFVLVVEGKNKAE----AELSLDA 237 (275)
T ss_pred EecchhHHHHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhhcCCcccEEEEEeCCcccc----cccchhH
Confidence 999999999999999999989999999999999999999999999999866437999999999976532 1112333
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHH
Q 016688 318 ELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCR 354 (384)
Q Consensus 318 ~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~ 354 (384)
....++.+++++|+|++.+|+.+|+ +||.||+.
T Consensus 238 ~~~~~~~~~l~~k~A~~~~a~~~~~----~k~~LY~~ 270 (275)
T COG0313 238 EITLLLLQALPLKKAAKLAAKITGL----NKKELYQL 270 (275)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHCc----CHHHHHHH
Confidence 3444555679999999999999999 99999994
No 2
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=1.3e-60 Score=464.32 Aligned_cols=273 Identities=38% Similarity=0.598 Sum_probs=248.3
Q ss_pred CCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeE
Q 016688 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIV 156 (384)
Q Consensus 77 ~~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~V 156 (384)
++++|+||+||||||||+|||+||+++|++||+|+|||+|++.+++++++++++++++|++|+++.++.+++.+++|++|
T Consensus 8 ~~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~V 87 (287)
T PRK14994 8 DNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNI 87 (287)
T ss_pred CCCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeE
Confidence 35579999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEE
Q 016688 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQI 236 (384)
Q Consensus 157 allSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlV 236 (384)
|++||+|||+|||||.+|++.+++.|++|++||||||+++|++++|+|.++|.|.||+|.+..++.+.|+.+.+.+.|+|
T Consensus 88 alvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t~V 167 (287)
T PRK14994 88 ALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRTLI 167 (287)
T ss_pred EEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHc--CCCCCcEEEEEECCCcccCCCCChHH
Q 016688 237 FYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSS--HQPKGEITVLVEGKAICVVETPSEDQ 314 (384)
Q Consensus 237 lye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~--~~~kGe~vlII~G~~~~~~~~~~~~~ 314 (384)
||++|||+.++++++.+.+|+++++++|+++||.||++++|+++++.+++.+ ..+||||||||.|+... .+..+ ++
T Consensus 168 ~yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~~~g~~~~i~~~~~~~~~~~kGE~vivi~~~~~~-~~~~~-~~ 245 (287)
T PRK14994 168 FYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQ-EDDLP-AD 245 (287)
T ss_pred EEEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcEEeeEHHHHHHHHHhcCCCCCceEEEEEeCCccc-ccccc-hh
Confidence 9999999999999999989889999999999999999999999999998853 34699999999986532 11112 22
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 315 LEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 315 ~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
..+.+. ++.+|+++|+|+|.+|+.+|+ +||++|+++.
T Consensus 246 ~~~~~~-~~~~~~~~k~a~~~~a~~~~~----~k~~~Y~~~~ 282 (287)
T PRK14994 246 ALRTLA-LLQAELPLKKAAALAAEIHGV----KKNALYKYAL 282 (287)
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHCc----CHHHHHHHHH
Confidence 233333 566799999999999999999 9999999653
No 3
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=100.00 E-value=4.4e-59 Score=450.62 Aligned_cols=268 Identities=36% Similarity=0.494 Sum_probs=243.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEcc
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSd 161 (384)
+||+|||||||++|||+||+++|++||+|+|||||++++||+++++.++.++||+||+.++.+.+++.+++|++||++||
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~valvSD 80 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNIAVSSD 80 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCc
Q 016688 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (384)
Q Consensus 162 aGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p 241 (384)
+|+|+|+|||+.||+.|+++|++|.++||+||+++|++.+|++.+.|.|.||+|.+.++|++.++.+++.+.|+|||++|
T Consensus 81 AG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp 160 (276)
T TIGR00096 81 AGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESH 160 (276)
T ss_pred CCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred hhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcC---CCCCcEEEEEECCCcccCCCCChHHHHHH
Q 016688 242 HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSH---QPKGEITVLVEGKAICVVETPSEDQLEKE 318 (384)
Q Consensus 242 ~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~---~~kGe~vlII~G~~~~~~~~~~~~~~~~~ 318 (384)
||+.++++++.+.+| ++++++||||||.+|++++|+++++.+++.+. ..+||+||||.|.......... ++..+.
T Consensus 161 ~Rl~~~L~~l~~~~g-~r~i~~arELTK~~E~~~~g~~~e~~~~~~~~~~~~~kGE~vlvi~g~~~~~~~~~~-~~~~~~ 238 (276)
T TIGR00096 161 HRLLTTLTDLNVFLG-SERFVGAAELTKKESEYWFGTVGQLLPDITEDTNNRKGGEVILIINGHKPQEECSDL-QALALE 238 (276)
T ss_pred HhHHHHHHHHHHhcC-CceEEEEEecCCCceEEEeCCHHHHHHHHHhccCCCCCeEEEEEEeCCccccccccc-hhHHHH
Confidence 999999999988766 89999999999999999999999999998643 4699999999985322111111 233444
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 319 LRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 319 ~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
+..++.+|+++|+|++.+|+.+|. +|+.+|...
T Consensus 239 ~~~~l~~~~~~k~aa~~~a~~~~~----~k~~~y~~~ 271 (276)
T TIGR00096 239 ILALLQAEVLLKKAAAYIAAEMTL----KKNKLLYQF 271 (276)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhcC----CcHHHHHHH
Confidence 555566799999999999999999 999988754
No 4
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=9.7e-38 Score=296.76 Aligned_cols=223 Identities=22% Similarity=0.296 Sum_probs=180.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecC------CcchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~------~~ne~~~~~~Ii~~l~~ 152 (384)
|+|+||+||+|||||++||+||+++|++||+|+|++ +..+++++.++.+.+.+..+ ....++..+.+.+.+++
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDD-LVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARK 79 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcC-CCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHC
Confidence 578999999999999999999999999999999976 56677888776554444332 22334456667788889
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchh-HHHH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR-TERL 225 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~-~~~L 225 (384)
|++|+++ ++|||++|+++.++++++.+.|+++++||||||+++|+|++|+||+ ++.|+.+..+..... ...+
T Consensus 80 g~~V~~l-~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (249)
T PRK06136 80 GKVVVRL-KGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFVTGHEAAGKLEPEVNW 158 (249)
T ss_pred CCeEEEE-eCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEEecccCCCccccccCH
Confidence 9999999 6999999999999999999999999999999999999999999996 455553222211111 2235
Q ss_pred HhhhcCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 226 MLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 226 ~~l~~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
+.++++..|+|+|++++++.++++.|.+. +++++++++++++|+++|++++++++++.+.+.+.+.+++. +||.|+..
T Consensus 159 ~~l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~-vviig~~~ 237 (249)
T PRK06136 159 SALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRVVRGTLGTIAEGAAAEDIQSPA-IIVIGEVV 237 (249)
T ss_pred HHHhCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCCE-EEEEchhh
Confidence 67777889999999999999999999874 66789999999999999999999999999887766677884 55556544
No 5
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=3.4e-37 Score=295.87 Aligned_cols=223 Identities=17% Similarity=0.223 Sum_probs=185.2
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEE
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Vall 159 (384)
+|+||+||+|||||++||+||+++|++||+|+|++++....+++.+..+++.......+.++..+.+.+.+++|++||++
T Consensus 7 ~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~Vv~L 86 (257)
T PRK15473 7 PRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTVVRL 86 (257)
T ss_pred CCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 48999999999999999999999999999999987666777888776655444333334566677777778899999999
Q ss_pred ccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchhHHHHHhhhcCCc
Q 016688 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLSANEVK 233 (384)
Q Consensus 160 SdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~~~~L~~l~~~~~ 233 (384)
+ +|||++|+++.++++++.+.+++++++|||||+++|+|++|+||+ ++.++.+..+........++.+++.+.
T Consensus 87 ~-sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~~~~~l~~~~~~~~ 165 (257)
T PRK15473 87 Q-TGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVPAREQLESFASHQT 165 (257)
T ss_pred e-CcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCCchhhHHHHhcCCC
Confidence 5 999999999999999999999999999999999999999999994 666653322211112245788888888
Q ss_pred eEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 234 TQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 234 TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
|+|+|++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+...+...+++ .+||.|+..
T Consensus 166 t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~~l~~~~~~~~~~~~-~~ivvG~~~ 236 (257)
T PRK15473 166 SMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADIAEKVRDAGIRKT-ALILVGNFL 236 (257)
T ss_pred eEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEEchhc
Confidence 99999999999999999987 47778999999999999999999999999998877667888 566666654
No 6
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=2.8e-37 Score=290.93 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=178.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEec------CCcchhhHHHHHHHHHhCCCe
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQGEI 155 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~------~~~ne~~~~~~Ii~~l~~Gk~ 155 (384)
+||+||+|||||++||+||+++|++||+|++ +++++.++++.++...+.+.+ +....++..+.+.+.+++|++
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 79 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLY-DALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKK 79 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEE-eCCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 4899999999999999999999999999999 567788888887765555433 222234555667788889999
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchhHHHHHhhh
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLSA 229 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~~~~L~~l~ 229 (384)
|+++ ++|||++||++.++++++.+.|++|+++||+||+++|+|++|+||+ ++.|+++.++........++.+.
T Consensus 80 V~~l-~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 158 (236)
T TIGR01469 80 VVRL-KGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFVTGHEADDKALEVDWEALA 158 (236)
T ss_pred EEEE-eCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEEEcccCCCcccccCHHHHh
Confidence 9999 6999999999999999999999999999999999999999999997 57776432222211112367777
Q ss_pred cCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 230 NEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 230 ~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
+..+|+|+|++++++.++++.|.+. +++++++++++++|+++|++++++++|+.+...+.+.++++ +|+.|+
T Consensus 159 ~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i~~~~l~el~~~~~~~~~~~~~-vvivg~ 231 (236)
T TIGR01469 159 KGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRVLIGTLGDLAEKAAEANLKSPA-LIVIGE 231 (236)
T ss_pred cCCCeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCE-EEEEcc
Confidence 8888999999999999999998874 66689999999999999999999999999887666778885 555565
No 7
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=7.8e-37 Score=286.94 Aligned_cols=217 Identities=21% Similarity=0.290 Sum_probs=181.4
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccC
Q 016688 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (384)
Q Consensus 83 LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSda 162 (384)
||+||+|||||++||+||+++|++||+|+|++++.+..+++.+..+.+.+..++.++++..+.+.+.+++|++|++++ +
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~L~-~ 79 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVVRLH-T 79 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEEEe-C
Confidence 699999999999999999999999999999887777778887776666665555566777788888888999999995 9
Q ss_pred CCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcch---hHHHHHhhhcCCc
Q 016688 163 GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS---RTERLMLSANEVK 233 (384)
Q Consensus 163 GDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~---~~~~L~~l~~~~~ 233 (384)
|||++|+++.++++.+.+.|++++++||+||+++|+|++|+||. .+.+. ..|++. ..+.+..+++.+.
T Consensus 80 GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~---~~~g~~~~~~~~~l~~~~~~~~ 156 (229)
T TIGR01465 80 GDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILT---RAEGRTPMPEGEKLADLAKHGA 156 (229)
T ss_pred cCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEE---eccCCCCCCChHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999993 33332 222211 2345777777788
Q ss_pred eEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 234 TQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 234 TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
++++|++++++.++.+.|.+. +++++++++++++|+++|++++++++++.+...+...+++ ++||.|+..
T Consensus 157 ~~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~~~~~~~~~~-~~ivvg~~~ 227 (229)
T TIGR01465 157 TMAIFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKIVRGTLADLADLVREEGIYRT-TLILVGPAL 227 (229)
T ss_pred eEEEECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEECccc
Confidence 999999999999999998885 6678999999999999999999999999988765555676 667777643
No 8
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=2.2e-36 Score=288.73 Aligned_cols=219 Identities=22% Similarity=0.287 Sum_probs=179.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
|+||+||+|||||++||+||+++|++||+|+|++++. ++++.+..+++++..+.+++....+.+++.+++|++|++++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~Vv~l~ 79 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTYL--RLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIVALVS 79 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCHH--HHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6899999999999999999999999999999987543 56666665666666554444444566888889999999995
Q ss_pred cCCCCCCCcchHHHHHHhhhCCC--CEEEEcCccHHHHHHHHcCCCCC-cEEEEEecc--CCcchhHHHHHhhhcCCceE
Q 016688 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIPGASAFVAALSASGLATD-EFTFVGFLP--KHARSRTERLMLSANEVKTQ 235 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi--~V~vIPGiSS~~aA~a~sGlp~~-~f~fiGflp--~~~~~~~~~L~~l~~~~~Tl 235 (384)
.|||++||++.++++.+.+.|+ +++++||+||+++|+|++|+|+. +|.|+++.. ....+....++.+++...++
T Consensus 80 -~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~~~~~~p~~~~~~~l~~~~~~~~~i 158 (246)
T PRK05765 80 -SGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISLSDLLIPREEILHRVTKAAEADFVI 158 (246)
T ss_pred -CCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEcCCCCCChHHHHHHHHHHhcCCeEE
Confidence 7999999999999999998876 79999999999999999999995 888886421 11122234566677888999
Q ss_pred EEecC--chhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcc
Q 016688 236 IFYVP--PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (384)
Q Consensus 236 Vlye~--p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~ 305 (384)
++|++ ++++.++++.+.++++++++|++++++|+++|++++||++++.+.... . +.-++||.|+..+
T Consensus 159 vly~~~~~~~~~~~~~~l~~~~~~~~pv~vv~~~t~~~E~i~~~tL~~l~~~~~~--~-~~~~~iiVg~~~~ 227 (246)
T PRK05765 159 VFYNPINENLLIEVMDIVSKHRKPNTPVGLVKSAYRNNENVVITTLSSWKEHMDE--I-GMTTTMIIGNSLT 227 (246)
T ss_pred EEEcccchhHHHHHHHHHHhcCCCCCEEEEEEeCCCCCeEEEEEEHHHhhhhhhc--C-CCceEEEECCccc
Confidence 99997 567888888888888889999999999999999999999999866543 2 3458888887653
No 9
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=6.5e-36 Score=287.85 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=181.8
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHh
Q 016688 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLK 151 (384)
Q Consensus 78 ~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~ 151 (384)
.++|+||+||+|||||++||+||+++|++||+|++++ +++.++++.+..+.+.+. +++...++..+.+.+.+.
T Consensus 12 ~~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 90 (263)
T PLN02625 12 EGPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDR-LVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAE 90 (263)
T ss_pred CCCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeC-cCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999975 566778887765554432 233344556677778888
Q ss_pred CCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcch----h
Q 016688 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS----R 221 (384)
Q Consensus 152 ~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~----~ 221 (384)
+|++|+++ +.|||++|+++.++++.+.+.|++|+++|||||+++|+|++|+||+ ++.|+ +.|++. .
T Consensus 91 ~g~~Vvvl-~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~---s~h~~~~~~~~ 166 (263)
T PLN02625 91 AGKTVVRL-KGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFL---TGHDREGGTDP 166 (263)
T ss_pred CCCeEEEE-cCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEE---ecccCCCcccc
Confidence 89999999 6999999999999999999999999999999999999999999996 36555 444432 2
Q ss_pred HHHHHhhhcCCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEE
Q 016688 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE 300 (384)
Q Consensus 222 ~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~ 300 (384)
...++.+.+.+.|+|+|++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+...+...+++++++|
T Consensus 167 ~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~~~~~~~~vvii- 245 (263)
T PLN02625 167 LDVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRVVFGTLEDIAEDVAAAGLVSPTVIVV- 245 (263)
T ss_pred hhhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCCEEEEE-
Confidence 23456667778899999999999999998887 3666899999999999999999999999998876667788855554
Q ss_pred CCCc
Q 016688 301 GKAI 304 (384)
Q Consensus 301 G~~~ 304 (384)
|+..
T Consensus 246 g~~~ 249 (263)
T PLN02625 246 GEVV 249 (263)
T ss_pred chhh
Confidence 5544
No 10
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-36 Score=280.31 Aligned_cols=221 Identities=19% Similarity=0.292 Sum_probs=198.3
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEE
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Vall 159 (384)
..++|+||.|||||++||+|+.++|++||+|++.++.+++.+|+.+..+.+++.-+..+.++..+.++++.++||+||.+
T Consensus 2 ~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRL 81 (254)
T COG2875 2 AMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRL 81 (254)
T ss_pred CceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEe
Confidence 46899999999999999999999999999999999999999999999999999877778889999999999999999999
Q ss_pred ccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEE---EeccCCcchhHHHHHhhhc
Q 016688 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFV---GFLPKHARSRTERLMLSAN 230 (384)
Q Consensus 160 SdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fi---Gflp~~~~~~~~~L~~l~~ 230 (384)
-+|||.||+...+.++++.+.||+++++||+||+++|+|.+|..+. .+.+. |..|.. -.+.++.++.
T Consensus 82 -hSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vp---e~e~l~~la~ 157 (254)
T COG2875 82 -HSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVP---EKESLAALAK 157 (254)
T ss_pred -ecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCC---chhHHHHHHh
Confidence 5999999999999999999999999999999999999999998763 22222 332322 2468889999
Q ss_pred CCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcc
Q 016688 231 EVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (384)
Q Consensus 231 ~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~ 305 (384)
++.|+++|.+.|.+.++.++|.+ ++++|+||.|+.+.||+||++++||++|+.++..+.++.. -.+|+.|....
T Consensus 158 ~~aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii~GTL~dIa~kv~~~~i~r-TAlIiVG~~l~ 232 (254)
T COG2875 158 HGATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKIIRGTLEDIAEKVKEAGIRR-TALIIVGDVLD 232 (254)
T ss_pred cCceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEEEeeHHHHHHHHHhcCcee-EEEEEEccccC
Confidence 99999999999999999999999 8999999999999999999999999999999988776644 48888888653
No 11
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=3.6e-36 Score=286.68 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=179.5
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEcc
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSd 161 (384)
+||+||+|||||++||+||+++|++||+|+|++++ ..+++.+..+++++..+.+++.+..+.+++.+++|++|++++
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~--~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~Vv~L~- 77 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY--THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNVALIS- 77 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH--HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeEEEEE-
Confidence 49999999999999999999999999999998754 477787777777777776666667777888899999999995
Q ss_pred CCCCCCCcchHHHHHHhhhCC--CCEEEEcCccHHHHHHHHcCCCC-CcEEEEEec--cCCcchhHHHHHhhhcCCceEE
Q 016688 162 AGTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFL--PKHARSRTERLMLSANEVKTQI 236 (384)
Q Consensus 162 aGDP~I~dpg~~Lv~~l~~~g--i~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGfl--p~~~~~~~~~L~~l~~~~~TlV 236 (384)
+|||++|+.+.++.+.+.+.+ ++|+++||+||+++|+|++|+|+ ++|.+.++- -..+....+.+..+++.+.|++
T Consensus 78 sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~tlv 157 (241)
T PRK15478 78 SGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVIC 157 (241)
T ss_pred CCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCeEEE
Confidence 999999999999999987765 56999999999999999999998 788877662 1223333346777788888999
Q ss_pred EecCchh-----HHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcc
Q 016688 237 FYVPPHK-----LLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (384)
Q Consensus 237 lye~p~r-----i~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~ 305 (384)
+||++++ +.++++.+.+++++++|+++++++|+++|+++++|++++.+ +....+ ++||+|+..+
T Consensus 158 lym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~~q~~~~~tL~~l~~----~~~~~~-~liivG~~~t 226 (241)
T PRK15478 158 FYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDF----EPVDMT-SLVIVGNKTT 226 (241)
T ss_pred EECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCCCeEEEEEEHHHhhh----cCCCCc-eEEEECCeee
Confidence 9999976 55566777778899999999999999999999999999975 234444 8888887653
No 12
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=3.2e-34 Score=271.26 Aligned_cols=220 Identities=22% Similarity=0.262 Sum_probs=192.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCC------cchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~------~ne~~~~~~Ii~~l~~ 152 (384)
++|++|+||.|||||++||+||+++|++||+|++ |..++..+|+.+..+++++...+ ..+++..+.+++.+++
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvly-D~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~ 80 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLY-DRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELARE 80 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEE-cCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999 77899999999887777765433 3467778889999999
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchhHHHHH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLM 226 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~~~~L~ 226 (384)
|++|+.+ ..|||+||++|.+.++.+.++||+++|+||+||..++.+..|+|+. +|+|+ ..|.++.+-.++
T Consensus 81 G~~VVRL-KgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~v---Tgh~~~~~~~w~ 156 (244)
T COG0007 81 GKRVVRL-KGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFV---TGHDRDGKLDWE 156 (244)
T ss_pred CCeEEEe-cCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEE---eCcCCCCCcChH
Confidence 9999999 7999999999999999999999999999999999999999999993 56666 444332224577
Q ss_pred hhhcCCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 227 LSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 227 ~l~~~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
.++....|+||||..+++.++.+.|.+ ++++++|+++.++.|.++|+++.||++++.+.......+++ +|||.|+..
T Consensus 157 ~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~~~gtL~~l~~~~~~~~~~~P-aiiviG~vv 234 (244)
T COG0007 157 ALARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRVVVGTLGDLAELAEEAGLTPP-ALIVIGEVV 234 (244)
T ss_pred HhcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEEEEeEHHHHHHHHHhcCCCCC-EEEEEccee
Confidence 888889999999999999999999988 46788999999999999999999999999998766667777 788888765
No 13
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=1.2e-33 Score=260.52 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=159.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC----CCCcEEecCCcchhhHHHHH--HHHHhCCCe
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN----IKTPLLSYHKFNESQREQTV--LNRLKQGEI 155 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~----i~~~lis~~~~ne~~~~~~I--i~~l~~Gk~ 155 (384)
+||+||+|||||++||+||+++|++||+|+|++ |+...+.+.+. ........ ....++..+.+ ++.+++|++
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~-r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~g~~ 78 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPE-RALEIVRDLLPEIFPMGKDRESL-EESYDEIAEIIEAIEAAKEGKD 78 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEET-TCHHHHHHHHHTEETTSSEEEEE-HHHHHHHHHHHHHHHHHHTTSE
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccc-cchHHHHhhccccccccccccch-hhhhhHHHHHHHHHHHHhccCC
Confidence 699999999999999999999999999999976 65544433322 11111111 12234556667 788999999
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhh--CCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEec--cCCcchhHHHHHhhhcC
Q 016688 156 VALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDEFTFVGFL--PKHARSRTERLMLSANE 231 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~--~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGfl--p~~~~~~~~~L~~l~~~ 231 (384)
|++++ .|||++|+++.++++++.+ .|++++++||+||+++|+|++|+||+++.+..+. |.........+..+.+.
T Consensus 79 V~~l~-~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (210)
T PF00590_consen 79 VVVLV-SGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLAN 157 (210)
T ss_dssp EEEEE-SBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHTT
T ss_pred EEEeC-CCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHhC
Confidence 99995 9999999999999999998 9999999999999999999999999854333222 33333456788888888
Q ss_pred CceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHH
Q 016688 232 VKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAK 283 (384)
Q Consensus 232 ~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~ 283 (384)
++|+|+|+.++++.++++.|.+. .++++++++++++|+++|++++++++|+.
T Consensus 158 ~~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i~~~tl~ela 210 (210)
T PF00590_consen 158 GDTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYPDERIFRGTLEELA 210 (210)
T ss_dssp TSEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEEEEEEHHHHH
T ss_pred CCEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEEEEeEHHHcC
Confidence 99999999999999999999887 46689999999999999999999999974
No 14
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-33 Score=259.09 Aligned_cols=219 Identities=23% Similarity=0.265 Sum_probs=192.1
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
+.|+||+||+||||++++|++|.++|++||+|+|..++. ++++ +..+++++......|-++++..++.+++|++||+
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~--d~i~-l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Val 77 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIE-LRPGKEVIRSGMREEIERAKEAIELAAEGRDVAL 77 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHH--HHHh-cCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEEE
Confidence 468999999999999999999999999999999998776 6777 6667788888777788999999999999999999
Q ss_pred EccCCCCCCCcchHHHHHHhhhCC---CCEEEEcCccHHHHHHHHcCCCC-CcEEEEEe--ccCCcchhHHHHHhhhcCC
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLAT-DEFTFVGF--LPKHARSRTERLMLSANEV 232 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~g---i~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGf--lp~~~~~~~~~L~~l~~~~ 232 (384)
|| +|||+||+...-..+.+.+.| ++|+|+||+||+++|+|++|-|+ ++|+.+.. +=.++....+.+...+..+
T Consensus 78 VS-sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~ad 156 (249)
T COG1010 78 VS-SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEAD 156 (249)
T ss_pred Ee-CCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHHHHHHHHHHhhCC
Confidence 98 999999999888888887654 89999999999999999999999 69999843 3345566778888889999
Q ss_pred ceEEEecCc-----hhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcc
Q 016688 233 KTQIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (384)
Q Consensus 233 ~TlVlye~p-----~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~ 305 (384)
..++||++- +.+.+.++.|.++.+++++|.++++.+.++|++...|++|+.+ .+.-++.++||+|++.+
T Consensus 157 fVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR~~e~v~ittL~~l~~----~~~iDM~T~vIIGns~T 230 (249)
T COG1010 157 FVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGREGEEVRITTLGDLDE----AEEIDMRTIVIIGNSET 230 (249)
T ss_pred EEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCCCCCceEEEEEhHHhcc----cccccceEEEEEcCCce
Confidence 999999974 3467888888888889999999999999999999999999985 12368999999999875
No 15
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=1.3e-32 Score=284.44 Aligned_cols=219 Identities=21% Similarity=0.256 Sum_probs=176.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCC------cchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~------~ne~~~~~~Ii~~l~~ 152 (384)
|.|+||+||+|||||++||+||+++|++||+|++ |......+++..+...+++...+ ..+++..+.+++.+++
T Consensus 1 m~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvy-drlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~ 79 (474)
T PRK07168 1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLY-DRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKE 79 (474)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhCCEEEE-eCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhC
Confidence 3489999999999999999999999999999999 55555566666554445443222 2234445567788899
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchh---HH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TE 223 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~---~~ 223 (384)
|++|+++ ..|||++|+++.++++++.+.|++++|+|||||+++|++++|+|+. ++.++ +.|.+.. ..
T Consensus 80 Gk~VvrL-~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~vi---T~h~~~~~~~~~ 155 (474)
T PRK07168 80 GKIVVRL-KGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLL---TGHAKGPLTDHG 155 (474)
T ss_pred CCEEEEE-eCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEE---ccCcCCccccch
Confidence 9999999 6999999999999999999999999999999999999999999994 56655 5554321 12
Q ss_pred HHHhhhcCCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 224 ~L~~l~~~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
.++.+. ...|+|||++.+++.++.+.|.+ ++++++++++++++|+++|+++.+|++++.+...+.+..++ ++||.|.
T Consensus 156 ~~~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~~~~~p-avivvG~ 233 (474)
T PRK07168 156 KYNSSH-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNENISNP-SMTIVGD 233 (474)
T ss_pred hHHHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhcCCCCC-EEEEECh
Confidence 344455 45699999999999999999888 46779999999999999999999999999887766666676 7777776
Q ss_pred Cc
Q 016688 303 AI 304 (384)
Q Consensus 303 ~~ 304 (384)
..
T Consensus 234 vv 235 (474)
T PRK07168 234 VV 235 (474)
T ss_pred Hh
Confidence 44
No 16
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=3.7e-32 Score=257.42 Aligned_cols=214 Identities=23% Similarity=0.226 Sum_probs=170.3
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccC
Q 016688 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (384)
Q Consensus 83 LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSda 162 (384)
||+||+|||||++||+||+++|++||+|+|+++ . .++++.+..+++.+.++.+++.+..+.+++.+.+|++|++++ .
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l~-~ 77 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT-Y-LDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVALVS-S 77 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc-H-HHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 689999999999999999999999999999863 3 366666655556666666555556667777788999999995 8
Q ss_pred CCCCCCcchHHHHHHhhhCC--CCEEEEcCccHHHHHHHHcCCCC-CcEEEEEecc--CCcchhHHHHHhhhcCCceEEE
Q 016688 163 GTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLP--KHARSRTERLMLSANEVKTQIF 237 (384)
Q Consensus 163 GDP~I~dpg~~Lv~~l~~~g--i~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGflp--~~~~~~~~~L~~l~~~~~TlVl 237 (384)
|||++|+.+.++++.+.+.+ ++++++||+||+++|+|++|+|| +++.++++.. .......+.+..+++.+.++++
T Consensus 78 GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~is~~~~~~~~~~~~~~l~~~~~~~~~~vl 157 (239)
T TIGR01466 78 GDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVISLSDLLTPWPEIEKRLRAAAEADFVIAI 157 (239)
T ss_pred CCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEEECCCCCCCchHHHHHHHHHhCCCcEEEE
Confidence 99999999999999998765 59999999999999999999999 8888875421 1222223345556666778999
Q ss_pred ecC-----chhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 238 YVP-----PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 238 ye~-----p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
|+. ++++.++.+.|.+..+.++++++++++|+++|+++.++++++.+. + -+.+++++.|+..
T Consensus 158 ~~~~~~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~----~-~~~~s~iii~~~~ 224 (239)
T TIGR01466 158 YNPRSKRRPEQFRRAMEILLEHRKPDTPVGIVRNAGREGEEVEITTLAELDEE----L-IDMLTTVIIGNSE 224 (239)
T ss_pred ECCcccchhhhHHHHHHHHHhcCCCCCEEEEEEECCCCCeEEEEEEHHHHhhc----C-CCCCeEEEECCch
Confidence 986 357888888888766668999999999999999999999999643 2 2456777777654
No 17
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=3.1e-32 Score=256.71 Aligned_cols=210 Identities=25% Similarity=0.276 Sum_probs=164.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhcCCC--CcEE----ecCC---cc---hhhHH
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIK--TPLL----SYHK---FN---ESQRE 143 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~-----s~~LL~~~~i~--~~li----s~~~---~n---e~~~~ 143 (384)
|+||+||+|||||++||+||+++|++||+|++++++. ...++..+... .++. ++.. +. .++..
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999987543 23344444321 3332 1211 11 13455
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCc-EEEEEeccCCcchhH
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~-f~fiGflp~~~~~~~ 222 (384)
+.+.+.+++|++|+++ ..|||++|+++.++++++.+.|++++++||+||+++|+|++|+||+. +.++++++.+.. .
T Consensus 81 ~~i~~~~~~g~~Vv~l-~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~~--~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFL-TLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAG--E 157 (230)
T ss_pred HHHHHHHHCCCcEEEE-eCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEeCCCC--H
Confidence 6677788889999999 58999999999999999998899999999999999999999999975 666677777653 2
Q ss_pred HHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEE
Q 016688 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE 300 (384)
Q Consensus 223 ~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~ 300 (384)
..+....+...++|+|++++++.++++.|.+ .|.+.++++++++|+++|+++.+ +.++.+. .-++++++|.
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~-~g~~~~v~v~e~l~~~~E~i~~~-~~~~~~~-----~~~y~s~~i~ 228 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAK-LGRLDAAVVVERATMPDEKIVDL-VREAIDD-----ALPYFSTILV 228 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHH-cCCcccEEEEEECCCCCcEEEcc-ccccCCC-----CCCeeEEEEe
Confidence 3466666777899999999999888887765 45567899999999999999986 6665211 2478888886
No 18
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=6.6e-32 Score=258.29 Aligned_cols=216 Identities=19% Similarity=0.258 Sum_probs=164.5
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchh--hHHHHHHHHHhCCCeE
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES--QREQTVLNRLKQGEIV 156 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~--~~~~~Ii~~l~~Gk~V 156 (384)
|+|+||+||+|||||++||+||+++|++||+|++.+ +.++.+.........+..+.+ +....+++.+.+|++|
T Consensus 1 m~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 75 (250)
T PRK05991 1 MSGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG-----PYLDRLPLRADQLRHASDNREELDRAGAALAMAAAGANV 75 (250)
T ss_pred CCceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 358999999999999999999999999999999964 234444321111112222221 2223346666789999
Q ss_pred EEEccCCCCCCCcchHHHHHHhhh-----CCCCEEEEcCccHHHHHHHHcCCCC-CcEEEEEeccCCc--chhHHHHHhh
Q 016688 157 ALISDAGTPGISDPGTELAKLCVD-----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHA--RSRTERLMLS 228 (384)
Q Consensus 157 allSdaGDP~I~dpg~~Lv~~l~~-----~gi~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGflp~~~--~~~~~~L~~l 228 (384)
++++ .|||++|+.+.++.+.+.+ .|++++++|||||+++|+|++|+|| +++.++++.+... ....+.++..
T Consensus 76 v~l~-~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~s~~~~~~~~~~l~~~l~~~ 154 (250)
T PRK05991 76 CVVS-GGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAISLSDNLKPWELIEKRLRLA 154 (250)
T ss_pred EEEe-CCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEeecccCCCCHHHHHHHHHhh
Confidence 9995 8999999999999888864 3689999999999999999999999 5788875543211 1233455566
Q ss_pred hcCCceEEEec-----CchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 229 ANEVKTQIFYV-----PPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 229 ~~~~~TlVlye-----~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
.+.+.++|+|+ .|+++.+.++.|.+.+.++.++++++++|+++|+++.++++++.+.. .+.++++|.|..
T Consensus 155 ~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~~~~~~~v~v~~~lg~~dE~i~~~~l~el~~~~-----~~~~s~vivg~~ 229 (250)
T PRK05991 155 AEAGFVIALYNPISRARPWQLGEAFDLLREHLPATVPVIFGRAAGRPDERIAVAPLAEADASM-----ADMATCVIIGSA 229 (250)
T ss_pred cCCCeEEEEECCccccchhhHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEEEEEEHHHhhhhc-----cCCCeEEEECCC
Confidence 66788999995 45577777788888777789999999999999999999999997542 367789998887
Q ss_pred cc
Q 016688 304 IC 305 (384)
Q Consensus 304 ~~ 305 (384)
.+
T Consensus 230 ~~ 231 (250)
T PRK05991 230 ET 231 (250)
T ss_pred cc
Confidence 64
No 19
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=7e-32 Score=278.47 Aligned_cols=218 Identities=19% Similarity=0.252 Sum_probs=177.6
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~~ 152 (384)
.+|+||+||+|||||++||+||+++|++||+|++ +.++...+++.+....+.+. ++..+.++..+.+.+.+++
T Consensus 214 ~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 292 (457)
T PRK10637 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEE-CCCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999 66777777765544333322 2334456667778888899
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcch-hHHHH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS-RTERL 225 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~-~~~~L 225 (384)
|++|++++ +|||++|+++.++++++.+.|++++++|||||+++|+|++|+|| +++.++ +.|.+. ....+
T Consensus 293 G~~Vv~L~-sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vi---s~h~~~~~~~~~ 368 (457)
T PRK10637 293 GKRVVRLK-GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELDW 368 (457)
T ss_pred CCEEEEEe-CCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEE---eCccCCCCccCH
Confidence 99999995 99999999999999999999999999999999999999999999 355544 444321 11235
Q ss_pred HhhhcCCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 226 MLSANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 226 ~~l~~~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
..+++...|+|+|++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+...+ . +..++||.|+..
T Consensus 369 ~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i~~~tl~el~~~~~~--~-~~~~viiig~~~ 445 (457)
T PRK10637 369 ENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRVVSGTLTQLGELAQQ--V-NSPSLIIVGRVV 445 (457)
T ss_pred HHHhCCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEEEEEEHHHHHHHHhc--C-CCCEEEEEChhh
Confidence 6677888999999999999999998876 56668999999999999999999999999875432 3 345888888754
No 20
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=7.2e-32 Score=254.55 Aligned_cols=209 Identities=17% Similarity=0.221 Sum_probs=160.5
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-----HHHHhhc-CCCCcEEec----CCcch------hhHH
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-----GKLLQYY-NIKTPLLSY----HKFNE------SQRE 143 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s-----~~LL~~~-~i~~~lis~----~~~ne------~~~~ 143 (384)
||+||+||+|||||++||+||+++|++||+|+|++++.+ ..++..+ +.+++++.+ +++.+ ++..
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 378999999999999999999999999999999876543 2234444 333344332 22221 2455
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC-cEEEEEeccCCcchhH
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRT 222 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~-~f~fiGflp~~~~~~~ 222 (384)
+.+.+.+++|++|+++ ..|||++|+.+.++++.+.+.|++++++||+||+++|+|++|+||+ .+....++|.+. .
T Consensus 81 ~~i~~~~~~g~~V~~l-~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~~~---~ 156 (229)
T PRK05576 81 EEIAAEAEEGKNVAFI-TLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATR---E 156 (229)
T ss_pred HHHHHHHHcCCcEEEE-eCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEECCC---H
Confidence 6677778899999999 5999999999999999998889999999999999999999999998 222223446664 2
Q ss_pred HHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 223 ~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
+.+....+.+.++|+|+..+++..+.+.|.+ .+ .++++++++|+++|++++++..++. . .+.++++|..+
T Consensus 157 ~~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~-~~--~~v~v~e~l~~~~E~i~~~~~~~~~------~-~~y~s~ii~~~ 226 (229)
T PRK05576 157 ALIEQALTDFDSVVLMKVYKNFALIEELLEE-GY--LDALYVRRAYMEGEQILRRLEEILD------D-LDYFSTIIANR 226 (229)
T ss_pred HHHHHHhhcCCEEEEEecCCCHHHHHHHHHh-cC--CCEEEEEECCCCCeEEEccccccCC------C-CCeeEEEEEec
Confidence 4455555677899999887777776655554 23 4999999999999999999877752 1 47889998754
No 21
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.97 E-value=5.7e-31 Score=243.89 Aligned_cols=206 Identities=21% Similarity=0.198 Sum_probs=152.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCC-CCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI-KTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i-~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
+||+||+|||||++||+||+++|++||+|++++ +. .++++.+.. ++..+..+. ++..+.+. .+.+|++|++++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-~~-~~~~~~~~~~~~~~~~~~~---~~~~~~i~-~~~~g~~V~~l~ 74 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-RV-LELFPELIDGEAFVLTAGL---RDLLEWLE-LAAKGKNVVVLS 74 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-hH-HHHHHHhccCccEEecCCH---HHHHHHHH-HhhCCCcEEEEe
Confidence 499999999999999999999999999999964 43 344554432 333443332 23334343 567899999995
Q ss_pred cCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecC
Q 016688 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVP 240 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~ 240 (384)
.|||++|+.+..+.+.+.+ +++++++||+||+++|+|++|+||+++.++++..+.... +.+..+.+.+.++++|..
T Consensus 75 -~GDP~~~~~~~~~~~~~~~-~~~veviPGiSs~~aaaa~~g~~l~~~~~is~~~~~~~~--~~l~~~~~~~~~~v~l~~ 150 (210)
T PRK05787 75 -TGDPLFSGLGKLLKVRRAV-AEDVEVIPGISSVQYAAARLGIDMNDVVFTTSHGRGPNF--EELEDLLKNGRKVIMLPD 150 (210)
T ss_pred -cCCccccccHHHHHHHhcc-CCCeEEEcCHHHHHHHHHHhCCCHHHcEEEeecCCCcch--HHHHHHHHcCCeEEEEcC
Confidence 9999999988888776543 489999999999999999999999998887553332211 345555555666777764
Q ss_pred c-hhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 241 P-HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 241 p-~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
+ +++.++.+.|.+...+++++++++++|+++|+++.++++++... + -+.+++++..+
T Consensus 151 ~~~~~~~i~~~L~~~g~~~~~~~v~~~l~~~~E~i~~~~l~~~~~~----~-~~~~s~v~v~~ 208 (210)
T PRK05787 151 PRFGPKEIAAELLERGKLERRIVVGENLSYPDERIHKLTLSEIEPL----E-FSDMSVVVILD 208 (210)
T ss_pred CCCCHHHHHHHHHhCCCCCcEEEEEEeCCCCCeEEEeCCHHHHhhc----c-cCCcEEEEEec
Confidence 4 46777777777632368999999999999999999999887543 1 34556666543
No 22
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.97 E-value=7.8e-30 Score=245.22 Aligned_cols=216 Identities=18% Similarity=0.156 Sum_probs=156.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc------HHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCe
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s------~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~ 155 (384)
+||+||+|||||++||+||+++|++||+|++++ ..+ ...++.+. +++.........++..+.+++.++ +++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~-~~s~l~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~ii~~~~-~~~ 77 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEF-YTSKLLGSSIEEIEEFF-GKRVVVLERSDVEENSFRLIERAK-SKD 77 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEec-cchhhccccHHHHHHHh-CCcccccCHHHHHHHHHHHHHHhc-CCC
Confidence 489999999999999999999999999999963 222 11222221 222222221112244667888775 489
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcE---EEEEeccCCcc---hhHHHHHhhh
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHAR---SRTERLMLSA 229 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f---~fiGflp~~~~---~~~~~L~~l~ 229 (384)
|++++ .|||++|+++.+++.++++.|+++++|||+||+++|++.+|+|+..| .-+-|...+++ .....++++.
T Consensus 78 Vv~l~-~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 78 VALLV-AGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred EEEEE-CCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 99995 99999999999999999999999999999999999999999999742 11123344442 1124566777
Q ss_pred cCCceEEEe---------cCchhHHHHHHHH----HH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcE
Q 016688 230 NEVKTQIFY---------VPPHKLLQFLEET----SL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (384)
Q Consensus 230 ~~~~TlVly---------e~p~ri~~~l~~L----~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~ 295 (384)
+..+|+|+| |++++..+.+..+ .+ ++++++++++++++|+++|+++.||++++.+... + ....
T Consensus 157 ~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i~~gtl~~l~~~~~--~-~~~~ 233 (257)
T TIGR00522 157 IGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVVKCDKIENLKNYDF--G-EPLH 233 (257)
T ss_pred cCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceEEEEEHHHHHhccc--C-CCCe
Confidence 778899998 4444433333333 22 4577999999999999999999999999987632 2 3446
Q ss_pred EEEEECCCc
Q 016688 296 TVLVEGKAI 304 (384)
Q Consensus 296 vlII~G~~~ 304 (384)
+|||.|+..
T Consensus 234 alii~g~~l 242 (257)
T TIGR00522 234 CLVVLAKTL 242 (257)
T ss_pred EEEEeCCCC
Confidence 899999743
No 23
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=241.21 Aligned_cols=211 Identities=19% Similarity=0.216 Sum_probs=159.6
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhc-CCCCcEEe--cCCcch--------hhHH
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYY-NIKTPLLS--YHKFNE--------SQRE 143 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~-----s~~LL~~~-~i~~~lis--~~~~ne--------~~~~ 143 (384)
.|+||+||+|||||++||+||+++|++||+|+++.... +..+++.+ ..+.+++. +++..+ ++.+
T Consensus 3 ~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~ 82 (238)
T PRK05948 3 LGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAA 82 (238)
T ss_pred CCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHH
Confidence 48999999999999999999999999999999975432 23455544 33344432 222111 2345
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhh--CCCCEEEEcCccHHHHHHHHcCCCCC----cEEEEEeccCC
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLPKH 217 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~--~gi~V~vIPGiSS~~aA~a~sGlp~~----~f~fiGflp~~ 217 (384)
+.+.+.+++|++||++ ..|||++|+++.++.+.+++ .|++|++|||+||+++|+|++|+|+. .+.++ |.+
T Consensus 83 ~~i~~~~~~g~~v~~l-~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii---~~~ 158 (238)
T PRK05948 83 DQVWHYLEQGEDVAFA-CEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAIL---PAL 158 (238)
T ss_pred HHHHHHHHcCCeEEEE-eCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEE---cCC
Confidence 7788889999999999 59999999999999999987 48999999999999999999999995 45544 776
Q ss_pred cchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEE
Q 016688 218 ARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITV 297 (384)
Q Consensus 218 ~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vl 297 (384)
.. ...++..+....++|++..++.+.++.+.|.+ .+...++.+++++|+++|++++ ++.++... ..++|++
T Consensus 159 ~~--~~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~-~g~~~~~~vv~~~~~~~E~i~~-~l~~~~~~-----~~~Y~S~ 229 (238)
T PRK05948 159 YH--LEELEQALTWADVVVLMKVSSVYPQVWQWLKA-RNLLEQASLVERATTPEQVIYR-NLEDYPDL-----RLPYFSL 229 (238)
T ss_pred CC--HHHHHHHHhCCCEEEEEECCccHHHHHHHHHh-CCCCCCEEEEEECCCCCcEEEe-ehhhcCcC-----CCCceEE
Confidence 43 23455555566788888877667887777766 3333468999999999999987 45554321 2678999
Q ss_pred EEECCC
Q 016688 298 LVEGKA 303 (384)
Q Consensus 298 II~G~~ 303 (384)
+|..+.
T Consensus 230 iiv~~~ 235 (238)
T PRK05948 230 LIIQKR 235 (238)
T ss_pred EEEcCC
Confidence 998654
No 24
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.97 E-value=5.5e-30 Score=237.45 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=144.6
Q ss_pred EEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhc-CCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCC
Q 016688 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAG 163 (384)
Q Consensus 85 iVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~-~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaG 163 (384)
+||+|||||++||+||+++|++||+|+++ .+.. +++..+ +.+...+. +..+.++..+.+.+.++ |++|++++ +|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~-g~~vv~l~-~G 75 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGG-ERHL-ELLAELIGEKREIIL-TYKDLDELLEFIAATRK-EKRVVVLA-SG 75 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEec-hhhH-HHHhhhcCCceEecc-CcCCHHHHHHHHHHhcC-CCCEEEEe-cC
Confidence 69999999999999999999999999996 4554 334433 22222222 23345666777776666 99999995 99
Q ss_pred CCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCchh
Q 016688 164 TPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHK 243 (384)
Q Consensus 164 DP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~r 243 (384)
||++|+++.++++.+.+ .+++++||+||+++|++++|+||+++.++++.++.... ..++.+...+.+++++...+.
T Consensus 76 DP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~--~~~~~l~~~~~~vvl~~~~~~ 151 (204)
T TIGR02467 76 DPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDE--LLLALLRGHRKVAVLTDPRNG 151 (204)
T ss_pred CCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcH--HHHHHHhcCCcEEEEeCCCCC
Confidence 99999999999998865 37999999999999999999999999988664443221 134445554544444443356
Q ss_pred HHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHH
Q 016688 244 LLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEA 285 (384)
Q Consensus 244 i~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~ 285 (384)
+.++.+.|.+ ++++.+++++++++|+++|++++++++|+.+.
T Consensus 152 ~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~ 194 (204)
T TIGR02467 152 PAEIARELIELGIGGSYELTVGENLGYEDERITEGTLEEIAAA 194 (204)
T ss_pred HHHHHHHHHHCCCCCCeEEEEEcccCCCCeEEEeCCHHHHhhc
Confidence 7777777766 34544599999999999999999999999764
No 25
>PTZ00175 diphthine synthase; Provisional
Probab=99.97 E-value=4.5e-29 Score=241.46 Aligned_cols=212 Identities=21% Similarity=0.242 Sum_probs=158.0
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-------HHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCC
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s-------~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk 154 (384)
+||+||+|||||++||+||+++|++||+|++++ +++ ..+...++ ++.+..+++..++..+.+++.++ ++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~-~ts~l~~~~~~~l~~~~g--k~~~~~~r~~~e~~~~~ii~~a~-~~ 77 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLES-YTSILINSNKEKLEEFYG--KPVIEADREMVEEGCDEILEEAK-EK 77 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEec-ccchhccCCHHHHHHhcC--CeeEecCccCHHHHHHHHHHHhC-CC
Confidence 699999999999999999999999999999975 322 12222333 34444444434445567888876 68
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---EeccCCcc---hhHHHHHhh
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV---GFLPKHAR---SRTERLMLS 228 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---Gflp~~~~---~~~~~L~~l 228 (384)
+||+++ +|||++|+++.+++.++++.|++|++|||+|+++++ +.+|++..+|-.. -|...++. .....++++
T Consensus 78 ~Vv~L~-~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~ 155 (270)
T PTZ00175 78 NVAFLV-VGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANR 155 (270)
T ss_pred CEEEEE-CCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHH
Confidence 999995 999999999999999999999999999999966554 8899999754211 12233322 123477888
Q ss_pred hcCCceEEE------------------------ecCchhHHHHHHHHHH-----hhCCCceEEEEeecCCCceEEEEech
Q 016688 229 ANEVKTQIF------------------------YVPPHKLLQFLEETSL-----LFGYSRRCVIAREITKMHEEFWRGTL 279 (384)
Q Consensus 229 ~~~~~TlVl------------------------ye~p~ri~~~l~~L~e-----~lg~d~~v~VareLtk~~E~i~~gtl 279 (384)
+...+|+|+ ||+++...+.+..+.+ +++++++++++.++|+++|+++.|++
T Consensus 156 ~~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i~~gtL 235 (270)
T PTZ00175 156 DNGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQIVSGTL 235 (270)
T ss_pred HcCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceEEEEEH
Confidence 888999999 7775443333333322 46788999999999999999999999
Q ss_pred hhHHHHHHcCCCCCcEEEEEECC
Q 016688 280 GEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 280 ~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
+++.+... ..+.++|||.|+
T Consensus 236 ~~l~~~d~---g~PlhsLIv~g~ 255 (270)
T PTZ00175 236 EDLLDVDF---GPPLHSLVICAP 255 (270)
T ss_pred HHHhhccc---CCCCEEEEEECC
Confidence 99965422 245679999996
No 26
>PRK04160 diphthine synthase; Provisional
Probab=99.96 E-value=1.2e-28 Score=236.69 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=150.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC------CcHHHHhhcCCCCcEEecCCcchhhHHHHHH-HHHhCCC
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR------HSGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGE 154 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr------~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii-~~l~~Gk 154 (384)
+||+||+|||||++||+||+++|++||+|++++.. ....+.+..+ .+....+....++..+.++ +..+ ++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELIG--KEIIVLDREDVEQESEKIILEEAK-EK 77 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCccccccHHHHHHHhC--CceeecCHHHHHHHHHHHHHHHHc-CC
Confidence 48999999999999999999999999999996532 1112222222 2223332222344455555 4444 58
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcE----EEE----EeccCCcchhHHHHH
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF----TFV----GFLPKHARSRTERLM 226 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f----~fi----Gflp~~~~~~~~~L~ 226 (384)
+|++++ +|||++|+++.++++.+++.|++++++||+||+++|+|++|+|...| ++. ++.+.+ .....++
T Consensus 78 ~Vv~L~-sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~--~~~~i~~ 154 (258)
T PRK04160 78 NVAFLT-AGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPES--PYDVIKD 154 (258)
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCC--HHHHHHH
Confidence 999995 99999999999999999999999999999999999999999997654 111 122211 1223345
Q ss_pred hhhcCCceEEEe--------cCchhHHHHHHHH----HH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCC-
Q 016688 227 LSANEVKTQIFY--------VPPHKLLQFLEET----SL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPK- 292 (384)
Q Consensus 227 ~l~~~~~TlVly--------e~p~ri~~~l~~L----~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~k- 292 (384)
.+.+...+++++ ++++.+.+.+.+. .+ .++++++++|++++|+++|+++.|+++++.+. +..
T Consensus 155 ~~~~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i~~~tl~~l~~~----~f~~ 230 (258)
T PRK04160 155 NLERGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVVRAGRLEELADY----DFGG 230 (258)
T ss_pred HHhcCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceEEEccHHHHhhC----CCCC
Confidence 555666788885 4555555555432 22 24569999999999999999999999999643 232
Q ss_pred CcEEEEEECCC
Q 016688 293 GEITVLVEGKA 303 (384)
Q Consensus 293 Ge~vlII~G~~ 303 (384)
...+++|.|+-
T Consensus 231 ~~~~~ii~~~~ 241 (258)
T PRK04160 231 PLHILIIPGKL 241 (258)
T ss_pred CCEEEEEeCCC
Confidence 36677777763
No 27
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.96 E-value=1.6e-28 Score=233.96 Aligned_cols=211 Identities=18% Similarity=0.133 Sum_probs=150.7
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC----cHHHHh-hcCCCCcEE----ecCCcc--------h---
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQ-YYNIKTPLL----SYHKFN--------E--- 139 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~----s~~LL~-~~~i~~~li----s~~~~n--------e--- 139 (384)
+|+||+||+|||||++||+||+++|++||+|+++..+. ..++++ ++..+.+++ ++.++. +
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 48999999999999999999999999999999974331 235665 343333332 222211 0
Q ss_pred ---hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC-cEEEEEecc
Q 016688 140 ---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLP 215 (384)
Q Consensus 140 ---~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~-~f~fiGflp 215 (384)
++.++.+.+.+++|++||++ ..|||++|+++.++.+.+ ++++++++||||||+++|+|++|+|+. +...+.++|
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L-~~GDP~iyst~~~l~~~l-~~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~~ 159 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVI-CEGDPFFYGSYMYLHDRL-APRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLS 159 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE-eCCCcHHHhHHHHHHHHH-hcCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEEc
Confidence 34456788889999999999 599999999999999887 458999999999999999999999994 222222346
Q ss_pred CCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcE
Q 016688 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (384)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~ 295 (384)
.+... .+..+.+...+.+++ ++..+++.++.+.|.+. |...++++++++|+++|+++. ..++.. +..++|
T Consensus 160 ~~~~~-~~l~~~l~~~~~~vv-~k~~~~~~~i~~~L~~~-g~~~~~~~v~~~~~~~E~i~~--~~~~~~-----~~~~Y~ 229 (241)
T PRK05990 160 GVLPE-EELRRRLADADAAVI-MKLGRNLDKVRRVLAAL-GLLDRALYVERATMANQRIVP--LAEVDP-----MASPYF 229 (241)
T ss_pred CCCCh-HHHHHHHhCCCCEEE-EEeCCcHHHHHHHHHHc-CCCCCEEEEEECCCCCeEEEE--ccccCC-----CCCCce
Confidence 54322 223344444444544 44458888888888763 333356677999999999984 333221 136889
Q ss_pred EEEEECC
Q 016688 296 TVLVEGK 302 (384)
Q Consensus 296 vlII~G~ 302 (384)
+++|..+
T Consensus 230 s~iiv~~ 236 (241)
T PRK05990 230 SLILVPG 236 (241)
T ss_pred EEEEEec
Confidence 9999854
No 28
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.95 E-value=2.5e-27 Score=227.42 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=142.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcC--CCCcEEecC--Ccch---------
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSYH--KFNE--------- 139 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s--------~~LL~~~~--i~~~lis~~--~~ne--------- 139 (384)
.+||+||+|||||++||+||+++|++||+|+++++... .++++.+- .+.+++.++ ..+.
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 47999999999999999999999999999999875322 34444442 234444433 1111
Q ss_pred --------hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhC---CCCEEEEcCccHHHHHHHHcCCCCCcE
Q 016688 140 --------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATDEF 208 (384)
Q Consensus 140 --------~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~---gi~V~vIPGiSS~~aA~a~sGlp~~~f 208 (384)
+...+.|.+.+++|++|+++ ..|||++|+++.++.+.+.+. |+++++|||+||+++|++++|+|+...
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l-~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFL-VWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEE-eCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11135678888999999999 599999999999999999864 899999999999999999999999643
Q ss_pred --EEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHH
Q 016688 209 --TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAF 286 (384)
Q Consensus 209 --~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~ 286 (384)
.+. .+|.+. .. ..+.....++|+|..++...+. |. .++.++++++++|+++|++++++++++.+..
T Consensus 161 ~~~l~-ii~g~~--l~---~~l~~~~~~vvv~k~~~~~~~~---L~---~~~~~v~v~e~l~~p~E~I~~~~l~ei~~~~ 228 (253)
T PRK08284 161 GEPVH-ITTGRR--LA---EGWPAGVDNVVVMLDGECSFRR---LD---DPDLEIWWGAYLGTPDEILIAGPLAEVAEEI 228 (253)
T ss_pred CceEE-EEecCc--hH---HHHHhcCCcEEEEECCcCCHHH---Hc---CCCCEEEEEecCCCCCeEEEEccHHHHHHHH
Confidence 122 224432 11 1233444567766665533222 22 3467999999999999999999999998876
Q ss_pred H
Q 016688 287 S 287 (384)
Q Consensus 287 ~ 287 (384)
.
T Consensus 229 ~ 229 (253)
T PRK08284 229 L 229 (253)
T ss_pred H
Confidence 4
No 29
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.95 E-value=4.4e-27 Score=221.68 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=158.6
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCC----CCcHHHHhhcCC-CCcEE----ecCCc-ch------hhHH
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDT----RHSGKLLQYYNI-KTPLL----SYHKF-NE------SQRE 143 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edt----r~s~~LL~~~~i-~~~li----s~~~~-ne------~~~~ 143 (384)
+++||.||+|||||++||+||+++|++||+|+.+.. +.++.+++.|-. +.... ++... .+ ++.+
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 478999999999999999999999999999999832 234667776643 22222 22222 11 4556
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC----cEEEEEeccCCcc
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLPKHAR 219 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~----~f~fiGflp~~~~ 219 (384)
++|.+.+.+|++||+++ -|||++||+..+|.+++...|++++++||+||+++++|++|+|+. .+.+ +|....
T Consensus 81 ~~va~~l~~G~~VAf~~-lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~V---lp~t~~ 156 (234)
T COG2243 81 AEVAAELEAGRDVAFLT-LGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSV---LPATRP 156 (234)
T ss_pred HHHHHHHHcCCeEEEEE-ccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEE---EeccCc
Confidence 77888899999999995 899999999999999999999999999999999999999999994 2343 366543
Q ss_pred hhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEE
Q 016688 220 SRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLV 299 (384)
Q Consensus 220 ~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII 299 (384)
...++......+++|+++.+.+..++ +++....|.....++++++|+.+|++++ +.+.... + ++.|++++
T Consensus 157 --~~~~~~~l~~~d~~VvMK~~~~~~~i-~~~l~~~g~~~~~~~v~R~~m~~e~i~~--l~~~~~~----~-~~Yfs~ii 226 (234)
T COG2243 157 --DEELERALADFDTAVVMKVGRNFEKL-RRLLAKLGLLDRAVYVERATMAGEKIVR--LAEAERD----E-KPYFSTIL 226 (234)
T ss_pred --hhhHHhHHhhCCeEEEEecCCcHHHH-HHHHHhcCCCceEEEEeecCCCCcEEEe--ccccCcc----c-CCceEEEE
Confidence 24455555567799999988755544 4444445656677799999999999997 4443221 2 48888888
Q ss_pred ECCC
Q 016688 300 EGKA 303 (384)
Q Consensus 300 ~G~~ 303 (384)
.-+.
T Consensus 227 ~~r~ 230 (234)
T COG2243 227 VRRK 230 (234)
T ss_pred Eecc
Confidence 7543
No 30
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.95 E-value=3.1e-27 Score=226.29 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=141.7
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcC--CCCcEEec----CCcch--------
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSY----HKFNE-------- 139 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s--------~~LL~~~~--i~~~lis~----~~~ne-------- 139 (384)
+||+||+|||||++||+||+++|++||+|+++...+. ..+++.+. .+.+++.+ ....+
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 6999999999999999999999999999999754432 33443332 23334433 21111
Q ss_pred -------hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhh---CCCCEEEEcCccHHHHHHHHcCCCCCc--
Q 016688 140 -------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATDE-- 207 (384)
Q Consensus 140 -------~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~---~gi~V~vIPGiSS~~aA~a~sGlp~~~-- 207 (384)
++.++.|.+.+++|++||++ ..|||++|+++.++.+.+.+ .++++++||||||+++|++++|+||++
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L-~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFL-VWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEE-eCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 13456677889999999999 59999999999999999876 478999999999999999999999974
Q ss_pred --EEEEEeccCCcchhHHHHHhh-hcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHH
Q 016688 208 --FTFVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKE 284 (384)
Q Consensus 208 --f~fiGflp~~~~~~~~~L~~l-~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~ 284 (384)
+.++ |.+. +... ....+++++|...++..+.+ .+ .+.++++++++|+++|++++++++++.+
T Consensus 161 ~~l~v~---~g~~------l~~~~l~~~~~~vilk~~~~~~~~l---~~---~~~~~~v~e~lg~pdE~I~~~~l~~l~~ 225 (249)
T TIGR02434 161 EPVQIT---TGRR------LAEGGFPEGDTVVVMLDGEQAFQRV---DP---EDIDIYWGAYLGTPDEILISGPLAEVGP 225 (249)
T ss_pred ceEEEE---eccc------hhhccccCCCeEEEEECCccCHHHh---cC---CCCEEEEEEeCCCCCeEEEEccHHHHHH
Confidence 4443 4331 2222 33456778887766633322 22 3679999999999999999999999877
Q ss_pred HHH
Q 016688 285 AFS 287 (384)
Q Consensus 285 ~~~ 287 (384)
..+
T Consensus 226 ~~~ 228 (249)
T TIGR02434 226 RIA 228 (249)
T ss_pred HHH
Confidence 654
No 31
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.95 E-value=2.7e-27 Score=220.40 Aligned_cols=204 Identities=21% Similarity=0.223 Sum_probs=151.0
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEcc
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSd 161 (384)
++|+||+||||++.||.+|+++|++||+|++.+ |+. .+++.+. +++...+....+.+..+.+.+..+ |++|+++ .
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~k-r~L-~~~~~~~-~~~~~~~~~~~~~~~l~~i~~~~~-g~~v~VL-a 75 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSK-RHL-ELLPPLI-KAERIIWPYPFDAESLEEILAERK-GRDVVVL-A 75 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecH-HHH-Hhhhccc-cceEEEeccccchHHHHHHHHHhC-CCCeEEE-e
Confidence 589999999999999999999999999999964 542 3333332 234554444444445566665555 8999999 5
Q ss_pred CCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecC-
Q 016688 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVP- 240 (384)
Q Consensus 162 aGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~- 240 (384)
+|||++||-|..+.+.... -++++||||||+|+|+|++|++|+++.++.+ |++. .+.++.+...+..+++..+
T Consensus 76 sGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~~~isl---Hgr~-~~~l~~~~~~~~~~vil~~~ 149 (210)
T COG2241 76 SGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDTEVISL---HGRP-VELLRPLLENGRRLVILTPD 149 (210)
T ss_pred cCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHeEEEEe---cCCC-HHHHHHHHhCCceEEEeCCC
Confidence 9999999999999887654 4789999999999999999999999998844 4332 2455544445555555443
Q ss_pred chhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEEC
Q 016688 241 PHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301 (384)
Q Consensus 241 p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G 301 (384)
.....++.+.|.+ +++ +++++|+|+||+++|++..++++++.... .....|++|..
T Consensus 150 ~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~~~Eri~~~~~~~~~~~~----fsdlnVv~v~~ 206 (210)
T COG2241 150 DFGPAEIAKLLTENGIG-DSRVTVLENLGYPDERITDGTAEDIAAEE----FSDLNVVAVEK 206 (210)
T ss_pred CCCHHHHHHHHHhCCCC-CceEEEEcccCCCchhhhcCchhhhcccc----cCCceEEEEEc
Confidence 2336666666666 455 79999999999999999999999987652 34555555543
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=4e-27 Score=229.45 Aligned_cols=218 Identities=21% Similarity=0.257 Sum_probs=182.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecC------CcchhhHHHHHHHHHhCCC
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~------~~ne~~~~~~Ii~~l~~Gk 154 (384)
|.+|+||+|||+|+++|++|+++|++||++++ |..++..+|+....+.+++-.. +..+++..+..++.+.+|.
T Consensus 256 G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~La-DkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~ 334 (506)
T KOG1527|consen 256 GDIYLVGSGPGSPELLTLKAVRVIQSADLLLA-DKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGA 334 (506)
T ss_pred CcEEEEccCCCChhheeHHHHHHHhhcceehh-hhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999 7789999999998888876433 3335666777889999999
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchhHHHHHhh
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLMLS 228 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~~~~L~~l 228 (384)
.|+.+ ..|||.||++|.+....+.++|+...|||||||...+.+.+|+|.. .|.|. ..+++.-.-.....
T Consensus 335 ~VVRL-KqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~c---TGtgrKG~~p~ip~ 410 (506)
T KOG1527|consen 335 TVVRL-KQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLFC---TGTGRKGGTPAIPA 410 (506)
T ss_pred EEEEe-cCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEEE---eccCCCCCCCCccc
Confidence 99999 8999999999999999999999999999999999999999999984 34444 33322100011122
Q ss_pred hcCCceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 229 ANEVKTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 229 ~~~~~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
.....|.||||.-||+..+...|.+ +++.+.|++++++.+.++|+++..++.++.+..++.+...+ .++|.|+..
T Consensus 411 fvp~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgscPdQR~vf~~Lkdv~ee~~~~gs~pP-glliiGk~v 486 (506)
T KOG1527|consen 411 FVPDTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGSCPDQRTVFAELKDVAEEIQSAGSVPP-GLLIIGKVV 486 (506)
T ss_pred cCCCceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccCCchHHHHHHHHHHHHHHHHhccCCCC-cEEEEeeee
Confidence 3457799999999999998888877 68889999999999999999999999999998877666666 677778765
No 33
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.5e-22 Score=187.40 Aligned_cols=212 Identities=24% Similarity=0.298 Sum_probs=160.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-------HHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCC
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s-------~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk 154 (384)
+||+||.|+.+.+|||+++++++++||.|++|. +++ .++-+.++ ++++......-++..+.|++.+++ +
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E~-YTS~~~~~~~e~le~~~g--kev~~~~R~dlE~~~~~il~~a~~-~ 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAEF-YTSILLGSNLEKLEELIG--KEVILLDREDLEENSRSILDRAKD-K 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEEe-eecccccchHHHHHHHhC--CceEeccHHHHhhcchhHHHHHhc-C
Confidence 589999999999999999999999999999974 553 22333343 566655443333335678888875 5
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEE----EE----EeccCCcchhHHHH-
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT----FV----GFLPKHARSRTERL- 225 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~----fi----Gflp~~~~~~~~~L- 225 (384)
+|+++ .+|||++..++..|+-++++.|++|++|||+|.++||++.+|+...+|. +. ++.|... .+.+
T Consensus 77 ~Vall-~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~---yd~Ik 152 (260)
T COG1798 77 DVALL-VAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSP---YDVIK 152 (260)
T ss_pred CEEEE-ecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcH---HHHHH
Confidence 69999 5999999999999999999999999999999999999999999987652 11 2333332 2233
Q ss_pred HhhhcCCceEEE--------ecCchhHHHHHHHHHHh-----hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCC
Q 016688 226 MLSANEVKTQIF--------YVPPHKLLQFLEETSLL-----FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPK 292 (384)
Q Consensus 226 ~~l~~~~~TlVl--------ye~p~ri~~~l~~L~e~-----lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~k 292 (384)
++....-+|+++ ||+++...+.+-++.+. +.+++.+++..++|.++|.+..|+++++.++..+ .
T Consensus 153 ~N~~~GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v~ag~l~~l~~~Dfg---~ 229 (260)
T COG1798 153 ENLERGLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVVRAGTLEELADEDFG---E 229 (260)
T ss_pred HhhhcCccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceEEechHHHHhhcccC---C
Confidence 344456678887 56655555544444442 5578999999999999999999999999988543 3
Q ss_pred CcEEEEEECCCc
Q 016688 293 GEITVLVEGKAI 304 (384)
Q Consensus 293 Ge~vlII~G~~~ 304 (384)
+.+++||.|+-.
T Consensus 230 Plh~lvvp~~Lh 241 (260)
T COG1798 230 PLHSLVVPGRLH 241 (260)
T ss_pred CceEEEEecccc
Confidence 558999998843
No 34
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.9e-16 Score=145.83 Aligned_cols=213 Identities=22% Similarity=0.278 Sum_probs=153.3
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH-------HHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCC
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~-------~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk 154 (384)
++|+||.|.|+.+|||+|++++.++|.-|+-|. +++. ++=+.| .++++--+..--++..+.|++.+. ..
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylEa-YTSil~~~l~~~lEk~y--Gk~iilADRemvEq~sd~il~~ad-~~ 76 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLEA-YTSILGVGLDATLEKFY--GKEIILADREMVEQESDKILDEAD-KE 76 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHHH-HHHHHHhhhhHHHHHHh--CceeEeccHHHHHhhHHHHhhhhh-hc
Confidence 589999999999999999999999999999873 5431 111223 244543322222445677888776 36
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEE---EEEeccCCcchh--HH-HHHhh
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT---FVGFLPKHARSR--TE-RLMLS 228 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~---fiGflp~~~~~~--~~-~L~~l 228 (384)
+||++ +.|||.-..++..|+-++++.||+|++|..+| +..|....|+.+.+|. -+-|....|+.. .+ ..++.
T Consensus 77 dVa~L-VVGdPfgATTHsDlvlRAk~~~ipv~vIHNAS-imNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr 154 (272)
T KOG3123|consen 77 DVAFL-VVGDPFGATTHSDLVLRAKELGIPVEVIHNAS-IMNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENR 154 (272)
T ss_pred ceEEE-EecCcccccchhhhheehhhcCCCeEEEechH-HHhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhh
Confidence 89999 68999999999999999999999999999998 6677899999987651 123444444321 11 11222
Q ss_pred hcCCceEEE-------------------ecCchh--HHHHHHHHHH--------hhCCCceEEEEeecCCCceEEEEech
Q 016688 229 ANEVKTQIF-------------------YVPPHK--LLQFLEETSL--------LFGYSRRCVIAREITKMHEEFWRGTL 279 (384)
Q Consensus 229 ~~~~~TlVl-------------------ye~p~r--i~~~l~~L~e--------~lg~d~~v~VareLtk~~E~i~~gtl 279 (384)
...-+|+++ ||+|+- +.+..++|++ .+.+|+.++-..++|.++|.|+.||+
T Consensus 155 ~~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i~~gt~ 234 (272)
T KOG3123|consen 155 QLGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKIVAGTI 234 (272)
T ss_pred hcCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCcceeeheeH
Confidence 223345553 776643 3455555555 36788999888899999999999999
Q ss_pred hhHHHHHHcCCCCCcEEEEEECCC
Q 016688 280 GEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 280 ~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
.++...... .+.+++||.|..
T Consensus 235 ~~l~~~d~G---~PLHslii~ge~ 255 (272)
T KOG3123|consen 235 KDLAEVDFG---EPLHSLIIPGET 255 (272)
T ss_pred HhHhhcccC---CCceeEEeecCc
Confidence 999987543 356899999843
No 35
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.21 E-value=3.5e-10 Score=111.18 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=137.7
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-EEec----CCcch-----hhHHHHHHH
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSY----HKFNE-----SQREQTVLN 148 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~-lis~----~~~ne-----~~~~~~Ii~ 148 (384)
|.+++.+||.|+|+.+.||+.-.+.|+++|-++.....| .+++.+..... .-.+ ..|.+ ...+..+++
T Consensus 1 mah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~RTkdH--PviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 1 MAHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYVRTKDH--PVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred CCceEEEEeeCCCchhhcchHHHHHHhccceEEEecCCC--chHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999954334 23443332222 2122 22222 345667777
Q ss_pred HHhCCCeEEEEccCCCCCCCcchH-HHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC-CcEEEEEeccCCcchhHHHHH
Q 016688 149 RLKQGEIVALISDAGTPGISDPGT-ELAKLCVDEKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHARSRTERLM 226 (384)
Q Consensus 149 ~l~~Gk~VallSdaGDP~I~dpg~-~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGflp~~~~~~~~~L~ 226 (384)
++++ ++|++. +.|.|.+..... -|+.++.+.++.|.|+||.|-+-+.+.+..+++ +.|.++.-..- . +
T Consensus 79 aAke-kdIvYA-VPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~vDa~~l-----~---~ 148 (488)
T COG3956 79 AAKE-KDIVYA-VPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIVDATDL-----S---N 148 (488)
T ss_pred hhcc-cceEEe-cCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEeccchh-----h---H
Confidence 7775 899999 799999998764 456677778999999999999999999999976 57888721111 1 1
Q ss_pred hhhcCCceEEEecCchh--HHHHHHHHHHhhCCCceEEEEeecCCCceE-EEEechhhHHHHH
Q 016688 227 LSANEVKTQIFYVPPHK--LLQFLEETSLLFGYSRRCVIAREITKMHEE-FWRGTLGEAKEAF 286 (384)
Q Consensus 227 ~l~~~~~TlVlye~p~r--i~~~l~~L~e~lg~d~~v~VareLtk~~E~-i~~gtl~eL~~~~ 286 (384)
....-...+|+...-.. ..++--.|.+.+++|.++.++...+..+|+ +..-++-||...-
T Consensus 149 ~il~vr~hivItQVY~~miAs~vKltLmE~ypDDyev~ivtaags~~ee~v~tvPLyELDr~~ 211 (488)
T COG3956 149 DILDVRLHIVITQVYDQMIASDVKLTLMEYYPDDYEVYIVTAAGSENEESVRTVPLYELDRQS 211 (488)
T ss_pred HHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCCceEEEEEeccCCCccceeeecceeechhh
Confidence 12222223333222111 223445677889999999999999998887 7777888887653
No 36
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.34 E-value=10 Score=39.17 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=100.0
Q ss_pred CCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---EeccCCcchhHHHHHhh
Q 016688 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV---GFLPKHARSRTERLMLS 228 (384)
Q Consensus 152 ~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---Gflp~~~~~~~~~L~~l 228 (384)
+|++|++++ .|+.=.+....+...+...|+++.+......+..++.... -.++.++ |..+.... ....+..+
T Consensus 205 ~g~~V~lit--~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~--~~DlVLIDTaGr~~~~~~-~l~el~~~ 279 (388)
T PRK12723 205 KSLNIKIIT--IDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK--DFDLVLVDTIGKSPKDFM-KLAEMKEL 279 (388)
T ss_pred CCCeEEEEe--ccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC--CCCEEEEcCCCCCccCHH-HHHHHHHH
Confidence 588999994 8877555555666666668999999998888887776652 3466666 54443221 11233332
Q ss_pred hc----CCceEEEecCchhHHHHHHHHHHh--hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 229 AN----EVKTQIFYVPPHKLLQFLEETSLL--FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 229 ~~----~~~TlVlye~p~ri~~~l~~L~e~--lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
.+ ...++.+..+.....++.+.+.+. ++ -..++ +||-||.-..|.+=.+.... +=++.-+=.|.
T Consensus 280 l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~-~~~~I----~TKlDet~~~G~~l~~~~~~-----~~Pi~yit~Gq 349 (388)
T PRK12723 280 LNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS-YKTVI----FTKLDETTCVGNLISLIYEM-----RKEVSYVTDGQ 349 (388)
T ss_pred HHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC-CCEEE----EEeccCCCcchHHHHHHHHH-----CCCEEEEeCCC
Confidence 22 224666665544433333333332 23 23444 79999999988887777653 23445555565
Q ss_pred CcccCCCCChHHHHHHHHHHHHCCCCHHHHHHHHHHHhCC
Q 016688 303 AICVVETPSEDQLEKELRGLISAGHNLSMVTTTLVVFTFH 342 (384)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~g~~~k~a~k~~a~~~g~ 342 (384)
...+ .....+....++.+ .|++..+.+..+-+..|.
T Consensus 350 ~vPe--Dl~~~~~~~~~~~l--~g~~~~~~~~~~~~~~~~ 385 (388)
T PRK12723 350 IVPH--NISIAEPLTFIKKI--NGYRISDDAEFIRKLKSK 385 (388)
T ss_pred CChh--hhhhCCHHHHHHHh--cCCCccchHHHHHHhccc
Confidence 4421 11112223334343 489999988887776554
No 37
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=84.83 E-value=1.7 Score=31.88 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 016688 314 QLEKELRGLISAGHNLSMVTTTLVVFT 340 (384)
Q Consensus 314 ~~~~~~~~l~~~g~~~k~a~k~~a~~~ 340 (384)
.+.+.+.+|+++|+|..+|+++||+..
T Consensus 15 ~AvE~Iq~LMaqGmSsgEAI~~VA~~i 41 (51)
T PF03701_consen 15 QAVERIQELMAQGMSSGEAIAIVAQEI 41 (51)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 366788999999999999999999875
No 38
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=83.29 E-value=26 Score=32.32 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=73.1
Q ss_pred HHHHHhhhcCCceEEEecCchhH-HHHHHHHHHhhCCCceEEEEeecCCC---ceEEEEechhhHHHHHHcCCCCCcEEE
Q 016688 222 TERLMLSANEVKTQIFYVPPHKL-LQFLEETSLLFGYSRRCVIAREITKM---HEEFWRGTLGEAKEAFSSHQPKGEITV 297 (384)
Q Consensus 222 ~~~L~~l~~~~~TlVlye~p~ri-~~~l~~L~e~lg~d~~v~VareLtk~---~E~i~~gtl~eL~~~~~~~~~kGe~vl 297 (384)
.+.++.+.. ...++++.+|... ..+-+.+.+.+|.-..+++-+.-..+ +=-+-..+.+++.+.+.+. ..+
T Consensus 38 i~~i~~~~~-~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As~e~I~~AL~~~--~~~--- 111 (174)
T TIGR00334 38 INLIKKAQK-KQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEASVEAIIAALENV--HEE--- 111 (174)
T ss_pred HHHHHHHhh-cCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCCHHHHHHHHHHh--ccc---
Confidence 344555554 4456666666443 34445566667766777777665543 2345555677777776432 111
Q ss_pred EEECCCcccCCCCChHHHHHHHHHHHHCCCC---HHHHHHHHHHHhCCCccCChhHHHHHhhhh
Q 016688 298 LVEGKAICVVETPSEDQLEKELRGLISAGHN---LSMVTTTLVVFTFHIAVCPNKFLFCRISYR 358 (384)
Q Consensus 298 II~G~~~~~~~~~~~~~~~~~~~~l~~~g~~---~k~a~k~~a~~~g~~~~~~~~~ly~~~~~~ 358 (384)
.... .+..+ ..+|++.|+. .|+-...+.+.+|+ |-||.|-|+.||.|-
T Consensus 112 --~~~~---~~~it-------~~dl~~~gL~g~~sk~rR~~lg~~L~I-Gy~N~KqllkrLn~f 162 (174)
T TIGR00334 112 --TKAQ---QSDIS-------WEDLLELGLIGPASKCKRLRLCNLLKL-GYFNHKQLFKRLNLF 162 (174)
T ss_pred --ccCc---ccccC-------HHHHHHCCCCCccHHHHHHHHHHHhCC-CCCcHHHHHHHHHHc
Confidence 0011 11222 2456666776 88999999999999 999999999999873
No 39
>PRK05114 hypothetical protein; Provisional
Probab=79.42 E-value=3.6 Score=31.08 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 016688 314 QLEKELRGLISAGHNLSMVTTTLVVFT 340 (384)
Q Consensus 314 ~~~~~~~~l~~~g~~~k~a~k~~a~~~ 340 (384)
.+.+.+.+|..+|+|..+|+++||+..
T Consensus 15 ~AVErIq~LMaqGmSsgEAI~~VA~ei 41 (59)
T PRK05114 15 KAVERIQELMAQGMSSGEAIALVAEEL 41 (59)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 366788999999999999999999874
No 40
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=76.23 E-value=9 Score=36.73 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=66.4
Q ss_pred EEecCCCCccchhHHHHHHHh--hCCEEEEcCCCCcHHHHhhcCCCCcEEecCCc----------ch-------------
Q 016688 85 LVATPIGNLEDITLRALRVLK--SANVILSEDTRHSGKLLQYYNIKTPLLSYHKF----------NE------------- 139 (384)
Q Consensus 85 iVGtGpGnp~dITlrAl~~L~--~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~----------ne------------- 139 (384)
+||+|-|.--.-.++++--.. +.++...+.+..+..++..+++. +.+..+. +|
T Consensus 23 viGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~--v~~l~~~~~lDl~iDGADEvd~~~~lIKGGGg 100 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIP--VSSLNEVDSLDLAIDGADEVDPNLNLIKGGGG 100 (227)
T ss_pred EEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCe--ecCccccCccceEeecccccCCCCCEEccChH
Confidence 566666665555555553212 34677777777788888888763 2221111 11
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccH-HHHHHHHcCCC
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAALSASGLA 204 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS-~~aA~a~sGlp 204 (384)
.-..++|+.... .+-|+++ |. ..+++.+.+..++|||+|..-+ +.-.+...|..
T Consensus 101 Al~rEKIva~~a-k~~IvIv-De---------sKlV~~LG~fplPVEVip~a~~~v~r~l~~~g~~ 155 (227)
T COG0120 101 ALLREKIVASAA-KRFIVIV-DE---------SKLVEVLGKFPLPVEVIPFARSAVLRKLEKLGGK 155 (227)
T ss_pred HHHHHHHHHHhc-CeEEEEE-eC---------ccchhhcCCCCcCEEEchhHHHHHHHHHHHhCCC
Confidence 123466776654 4678887 63 5778999888999999998744 44555556653
No 41
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.54 E-value=4.6 Score=30.22 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhC
Q 016688 314 QLEKELRGLISAGHNLSMVTTTLVVFTF 341 (384)
Q Consensus 314 ~~~~~~~~l~~~g~~~k~a~k~~a~~~g 341 (384)
.+.+.+.+|+++|||..+|+++||+...
T Consensus 15 ~AVE~Iq~lMaeGmSsGEAIa~VA~elR 42 (60)
T COG3140 15 KAVERIQELMAEGMSSGEAIALVAQELR 42 (60)
T ss_pred HHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 3567888999999999999999998753
No 42
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=71.65 E-value=9.1 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 313 DQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 313 ~~~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
+++.+.+..+...++|.++| |+.+|+ |+..|+.|+.
T Consensus 3 e~l~~Ai~~v~~g~~S~r~A----A~~ygV----p~sTL~~r~~ 38 (45)
T PF05225_consen 3 EDLQKAIEAVKNGKMSIRKA----AKKYGV----PRSTLRRRLR 38 (45)
T ss_dssp HHHHHHHHHHHTTSS-HHHH----HHHHT------HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH----HHHHCc----CHHHHHHHHc
Confidence 45666676655433887665 578999 9999998764
No 43
>PF13309 HTH_22: HTH domain
Probab=64.55 E-value=15 Score=27.91 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 313 DQLEKELRGLISAG-HNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 313 ~~~~~~~~~l~~~g-~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
++-.+.++.|-++| ...|.|+..+|+..|+ +|-.+|.=|
T Consensus 24 ~~k~~iV~~L~~~G~F~lKgav~~vA~~L~i----S~~TVY~YL 63 (64)
T PF13309_consen 24 EEKKEIVRQLYEKGIFLLKGAVEYVAEKLGI----SRATVYRYL 63 (64)
T ss_pred HHHHHHHHHHHHCCCcccCcHHHHHHHHHCC----CHHHHHHHc
Confidence 34455677777788 8999999999999999 999999743
No 44
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=63.48 E-value=14 Score=25.88 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 317 KELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 317 ~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
+.+.+|.++|++.++ +|+.+|+ +|..+|.-+
T Consensus 12 ~~i~~l~~~G~si~~----IA~~~gv----sr~TvyR~l 42 (45)
T PF02796_consen 12 EEIKELYAEGMSIAE----IAKQFGV----SRSTVYRYL 42 (45)
T ss_dssp HHHHHHHHTT--HHH----HHHHTTS-----HHHHHHHH
T ss_pred HHHHHHHHCCCCHHH----HHHHHCc----CHHHHHHHH
Confidence 445677888988665 5678899 999999854
No 45
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=63.41 E-value=42 Score=26.27 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=45.5
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHH
Q 016688 97 TLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAK 176 (384)
Q Consensus 97 TlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~ 176 (384)
|+..++.+.+.+.++- |.|.........-++..-+++. + .+..+..+..++.|+++++.| .......+
T Consensus 2 ~~~e~~~~~~~~~~ii-D~R~~~~~~~~hipgA~~ip~~-----~-~~~~~~~~~~~~~vvl~c~~g-----~~a~~~a~ 69 (90)
T cd01524 2 QWHELDNYRADGVTLI-DVRTPQEFEKGHIKGAINIPLD-----E-LRDRLNELPKDKEIIVYCAVG-----LRGYIAAR 69 (90)
T ss_pred CHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCCEeCCHH-----H-HHHHHHhcCCCCcEEEEcCCC-----hhHHHHHH
Confidence 4555555556676666 7886544332221222222221 1 222333456678888887543 22344556
Q ss_pred HhhhCCCCEEEEcCc
Q 016688 177 LCVDEKIPVVPIPGA 191 (384)
Q Consensus 177 ~l~~~gi~V~vIPGi 191 (384)
.+++.|+++.++.|-
T Consensus 70 ~L~~~G~~v~~l~GG 84 (90)
T cd01524 70 ILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHCCCCEEEecCC
Confidence 677788888888775
No 46
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=55.35 E-value=69 Score=33.44 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred eEEEEecCCC--CccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc
Q 016688 82 GLYLVATPIG--NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP 130 (384)
Q Consensus 82 ~LyiVGtGpG--np~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~ 130 (384)
+++++|-|+| +-..--.-+..+++.||.|..-| ..+.++|+.+++..+
T Consensus 150 pv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD-~~S~~~Lk~lGv~~~ 199 (426)
T PRK10017 150 PLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRE-SVSLDLMKRSNITTA 199 (426)
T ss_pred CEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEcc-HHHHHHHHHhCCCcc
Confidence 4778887777 33334556778999999999977 478889999988643
No 47
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=52.90 E-value=28 Score=30.51 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=22.9
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHhHhc
Q 016688 348 NKFLFCRISYRTFFFLFLQKFLVFLVFNF 376 (384)
Q Consensus 348 ~~~ly~~~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
-+.....+||+|++|+++--+..+++.||
T Consensus 101 iN~Fie~is~Kt~~fll~~~~~~~~~~N~ 129 (135)
T PF10104_consen 101 INSFIEPISWKTLIFLLLIILIWIFASNF 129 (135)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34588899999999998877776666665
No 48
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=52.50 E-value=57 Score=31.14 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCC-CCCcEEEEEeccCCcch
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGFLPKHARS 220 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGl-p~~~f~fiGflp~~~~~ 220 (384)
..+...+.++.|++|..+| .|...-.+...++++.+++.|..+.+-+|.-...-++....+ .++.+.+.+. +..
T Consensus 50 H~e~a~~aL~aGkhVl~~s-~gAlad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~~ig~~~~V~i~~~---k~p- 124 (229)
T TIGR03855 50 VKEYAEKILKNGKDLLIMS-VGALADRELRERLREVARSSGRKVYIPSGAIGGLDALKAASLGRIERVVLTTT---KPP- 124 (229)
T ss_pred HHHHHHHHHHCCCCEEEEC-CcccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhcccCCceEEEEEEe---cCh-
Confidence 3566778889999999996 565554456788999999999999888877666655544332 3455655533 221
Q ss_pred hHHHHHhhhcCCceEEEecCchh
Q 016688 221 RTERLMLSANEVKTQIFYVPPHK 243 (384)
Q Consensus 221 ~~~~L~~l~~~~~TlVlye~p~r 243 (384)
..|.. ......++|+++-|
T Consensus 125 --~~~~~--~~~~~~~~f~G~a~ 143 (229)
T TIGR03855 125 --ASLGR--DIKEPTTIFEGSAS 143 (229)
T ss_pred --HHhcC--CCCCCEEEEEecHH
Confidence 22332 34556678887643
No 49
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=49.25 E-value=44 Score=30.12 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHH-HhhhhHHHHHHHHHHHHH
Q 016688 313 DQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFC-RISYRTFFFLFLQKFLVF 371 (384)
Q Consensus 313 ~~~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~-~~~~~~~~~~~~~~~~~~ 371 (384)
.++...+.+++++|.|-++.+..+-..||- -++|. +++|+|....++--+++.
T Consensus 64 ~DlR~~V~e~l~eGkS~~qIid~mVaRYG~------FVly~Pp~~~~T~lLW~~Pv~lll 117 (153)
T COG3088 64 RDLRHQVYELLQEGKSDQQIIDYMVARYGE------FVLYKPPLTGQTLLLWGLPVVLLL 117 (153)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhhcc------eeeecCCCchhHHHHHHhHHHHHH
Confidence 346667888999999999999999999997 78899 999999876666555443
No 50
>PLN03034 phosphoglycerate kinase; Provisional
Probab=47.44 E-value=2.3e+02 Score=30.25 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcch---HHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---E
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---G 212 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg---~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---G 212 (384)
......|...+++|-+|+++|--|.|-=.++. ...++++.+ .|.+|..+|..-.-.+--+...+...++..+ -
T Consensus 118 ~a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvR 197 (481)
T PLN03034 118 RAAIPTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVR 197 (481)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccC
Confidence 34456677778899999999999999323322 223333333 3778888886654444455556666555443 2
Q ss_pred eccCCcchhHHHHHhhhcCCceEEE--ecCchhHHH
Q 016688 213 FLPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQ 246 (384)
Q Consensus 213 flp~~~~~~~~~L~~l~~~~~TlVl--ye~p~ri~~ 246 (384)
|.+...+.....-+.++...+-.|- |...||...
T Consensus 198 F~~eE~~nd~~fa~~LA~l~DiyVNDAFgtaHR~ha 233 (481)
T PLN03034 198 FYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHA 233 (481)
T ss_pred cCcccccCcHHHHHHHHhhCCEEEecchhhhHhccc
Confidence 2233322223344455555554331 344566443
No 51
>COG5085 Predicted membrane protein [Function unknown]
Probab=46.65 E-value=62 Score=30.74 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=34.9
Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHhCCCccCChhHHHHHhhhhHHHHHHHHHHHHHHhHhc
Q 016688 317 KELRGLISA-GHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNF 376 (384)
Q Consensus 317 ~~~~~l~~~-g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
..++..+.. |.+--.-.|+.|+.+|= ==+-....+||||++|.+.--+...++-|+
T Consensus 154 ~kwkqcm~~~~~~~vg~tkl~A~vFgd----vIdaFi~~~s~rs~lfili~vig~lf~sn~ 210 (230)
T COG5085 154 SKWKQCMKNNGYRSVGYTKLIAEVFGD----VIDAFIRKFSVRSSLFILIFVIGFLFFSNA 210 (230)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 344555544 56666666777777664 224466799999999987655544444343
No 52
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=46.65 E-value=62 Score=30.74 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=34.9
Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHhCCCccCChhHHHHHhhhhHHHHHHHHHHHHHHhHhc
Q 016688 317 KELRGLISA-GHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYRTFFFLFLQKFLVFLVFNF 376 (384)
Q Consensus 317 ~~~~~l~~~-g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
..++..+.. |.+--.-.|+.|+.+|= ==+-....+||||++|.+.--+...++-|+
T Consensus 154 ~kwkqcm~~~~~~~vg~tkl~A~vFgd----vIdaFi~~~s~rs~lfili~vig~lf~sn~ 210 (230)
T KOG4503|consen 154 SKWKQCMKNNGYRSVGYTKLIAEVFGD----VIDAFIRKFSVRSSLFILIFVIGFLFFSNA 210 (230)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 344555544 56666666777777664 224466799999999987655544444343
No 53
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=46.43 E-value=3.3e+02 Score=27.57 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCccchhHHHHHHHhhC--------CEEEEcCCCCcHHHHhhcCCCC-c-EEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 91 GNLEDITLRALRVLKSA--------NVILSEDTRHSGKLLQYYNIKT-P-LLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 91 Gnp~dITlrAl~~L~~A--------DvI~~edtr~s~~LL~~~~i~~-~-lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
-|++.+..||++.|++. |+-+||-|-| -|.|+-. . .+ .++..-+..++..+..++.|-+++--|
T Consensus 88 ~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~h-----GHcGil~~~g~v-dND~Tl~~L~k~Avs~A~AGADiVAPS 161 (320)
T cd04824 88 DDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSH-----GHCGILYEDGTI-NNEASVKRLAEVALAYAKAGAHIVAPS 161 (320)
T ss_pred cCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCC-----CcceeECCCCcC-cCHHHHHHHHHHHHHHHHhCCCEEecc
Confidence 46788889999999984 5555554443 2333211 0 00 011112334556667788999998887
Q ss_pred cCCCCCCCcchHHHHHHhhhCCC--CEEEEc
Q 016688 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIP 189 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi--~V~vIP 189 (384)
| +.-++-..+.+.+.++|+ +|-|..
T Consensus 162 d----MMDGrV~aIR~aLD~~G~~~~v~ImS 188 (320)
T cd04824 162 D----MMDGRVRAIKQALIQAGLGNKVSVMS 188 (320)
T ss_pred c----ccccHHHHHHHHHHHCCCccCCeeee
Confidence 5 455777888888988888 565543
No 54
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=43.79 E-value=1.7e+02 Score=24.12 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=56.4
Q ss_pred EEEecCCCCccchhHHHHHHHhh---CCEEEEcCCCCc-HHHHhhcCCCCc-E--EecCCcchhhHHHHHHHHHhC-CC-
Q 016688 84 YLVATPIGNLEDITLRALRVLKS---ANVILSEDTRHS-GKLLQYYNIKTP-L--LSYHKFNESQREQTVLNRLKQ-GE- 154 (384)
Q Consensus 84 yiVGtGpGnp~dITlrAl~~L~~---ADvI~~edtr~s-~~LL~~~~i~~~-l--is~~~~ne~~~~~~Ii~~l~~-Gk- 154 (384)
.++++++|+..++-++-+..+-+ -+++.. +...+ ..+++......+ + ++.........+..+++.+++ +.
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~l-g~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~ 80 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDL-GVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLD 80 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCC
Confidence 37899999999999887766644 345443 23343 455554432222 2 343322223445556666553 33
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCc
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGi 191 (384)
++.++ ..|.+...++ +.+.+.|++...-||-
T Consensus 81 ~~~i~-vGG~~~~~~~-----~~~~~~G~D~~~~~~~ 111 (119)
T cd02067 81 DIPVL-VGGAIVTRDF-----KFLKEIGVDAYFGPAT 111 (119)
T ss_pred CCeEE-EECCCCChhH-----HHHHHcCCeEEECCHH
Confidence 56666 4787655544 3456677766655554
No 55
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=42.72 E-value=98 Score=27.84 Aligned_cols=105 Identities=23% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHH--hhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCC
Q 016688 91 GNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (384)
Q Consensus 91 Gnp~dITlrAl~~L--~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~ 168 (384)
|+.++.=..|.+.+ +.+|+|++ .-.+..+|+..- +.|++.. ..+..+..+.+.+.-+.+.+|+++ |.+.+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIs--RG~ta~~lr~~~-~iPVV~I-~~s~~Dil~al~~a~~~~~~Iavv---~~~~~~ 89 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIIS--RGGTAELLRKHV-SIPVVEI-PISGFDILRALAKAKKYGPKIAVV---GYPNII 89 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEE--EHHHHHHHHCC--SS-EEEE----HHHHHHHHHHCCCCTSEEEEE---EESS-S
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEE--CCHHHHHHHHhC-CCCEEEE-CCCHhHHHHHHHHHHhcCCcEEEE---eccccc
Q ss_pred cchHHH----------------------HHHhhhCCCCEEEEcCccHHHHHHHHcCCC
Q 016688 169 DPGTEL----------------------AKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (384)
Q Consensus 169 dpg~~L----------------------v~~l~~~gi~V~vIPGiSS~~aA~a~sGlp 204 (384)
.....+ +..+.+.| ++++=|-+...-.+...|++
T Consensus 90 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G--~~viVGg~~~~~~A~~~gl~ 145 (176)
T PF06506_consen 90 PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEG--VDVIVGGGVVCRLARKLGLP 145 (176)
T ss_dssp CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT----EEEESHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcC--CcEEECCHHHHHHHHHcCCc
No 56
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=42.66 E-value=72 Score=32.33 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=76.0
Q ss_pred CCCCccchhHHHHHHH--hhCCEEEEcCCCCcHHHHhhcCC-------------CCcEEecCCcchhhHHHHHHHHHhCC
Q 016688 89 PIGNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNI-------------KTPLLSYHKFNESQREQTVLNRLKQG 153 (384)
Q Consensus 89 GpGnp~dITlrAl~~L--~~ADvI~~edtr~s~~LL~~~~i-------------~~~lis~~~~ne~~~~~~Ii~~l~~G 153 (384)
-.+|+++|-++.+... +..|+|++-.-|.+......+++ +.|+. .|-.+.....+++++.+..|
T Consensus 131 E~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlm-vHigePp~~~dEvlerL~~G 209 (386)
T COG3964 131 ELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLM-VHIGEPPVLMDEVLERLRRG 209 (386)
T ss_pred hhCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceE-EecCCCCccHHHHHHhccCC
Confidence 3478999998887665 56999999776654333333332 23333 23222334457888999988
Q ss_pred CeEEEEccCCCC---CCCcc-hHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCC
Q 016688 154 EIVALISDAGTP---GISDP-GTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (384)
Q Consensus 154 k~VallSdaGDP---~I~dp-g~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp 204 (384)
.-+.-. -.|-| ..-|- -...+++|+++|+.+.+=.|-+|+.-..++.-+.
T Consensus 210 DIitHc-fngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~aia 263 (386)
T COG3964 210 DIITHC-FNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRAIA 263 (386)
T ss_pred ceeeee-ccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHHHh
Confidence 766555 34554 33332 2567899999999999999999998777766543
No 57
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=42.65 E-value=68 Score=32.25 Aligned_cols=85 Identities=16% Similarity=0.130 Sum_probs=54.1
Q ss_pred CCCccchhHHHHHHHhh--------CCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEcc
Q 016688 90 IGNLEDITLRALRVLKS--------ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (384)
Q Consensus 90 pGnp~dITlrAl~~L~~--------ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSd 161 (384)
--|++.+-.||++.||+ +|+-+||-|-| -|.|+-.+-...++..-+..++..+..++.|-+|+--||
T Consensus 84 A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~h-----GHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSd 158 (314)
T cd00384 84 AYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDH-----GHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSD 158 (314)
T ss_pred ccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCC-----CcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeeccc
Confidence 45788899999999998 45556655544 233321110001111123445566677889999988875
Q ss_pred CCCCCCCcchHHHHHHhhhCCC
Q 016688 162 AGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 162 aGDP~I~dpg~~Lv~~l~~~gi 183 (384)
+.-++-..+.+.+.++|+
T Consensus 159 ----MMDGrV~aIR~aLd~~g~ 176 (314)
T cd00384 159 ----MMDGRVAAIREALDEAGF 176 (314)
T ss_pred ----ccccHHHHHHHHHHHCCC
Confidence 455777888888888887
No 58
>PLN02282 phosphoglycerate kinase
Probab=42.45 E-value=3.6e+02 Score=28.13 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcch---HHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---E
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---G 212 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg---~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---G 212 (384)
....+.|...+++|-+|+++|--|-|-=.++. ....+++.+ .|.+|..+|-...-.+--+...+...++..+ -
T Consensus 43 ~a~lpTI~~l~~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~R 122 (401)
T PLN02282 43 RAAVPTIKYLMGHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKLVAELPEGGVLLLENVR 122 (401)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCCEEEEeccc
Confidence 34456677778889999999999999323322 223333333 3678888877654444444455555554443 2
Q ss_pred eccCCcchhHHHHHhhhcCCceEEE--ecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCC
Q 016688 213 FLPKHARSRTERLMLSANEVKTQIF--YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQ 290 (384)
Q Consensus 213 flp~~~~~~~~~L~~l~~~~~TlVl--ye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~ 290 (384)
|.+.........-+.++...+..|- |...||.....-.+.+.++ +.+.+. .-|+ .+..+...+ ..
T Consensus 123 F~~~E~~~~~~~a~~LA~l~DvyVNDAFg~aHR~haS~~gi~~~l~---~~~aG~----lmek----El~~L~~~l--~~ 189 (401)
T PLN02282 123 FYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLK---PSVAGF----LMQK----ELDYLVGAV--AN 189 (401)
T ss_pred cCcccccCHHHHHHHHHHhCcEeeechhhhhhhcccchhhhhhhcC---ccccch----HHHH----HHHHHHHHh--cC
Confidence 2343322233344455555554331 4445665443332222221 112111 1111 123333332 23
Q ss_pred CCCcEEEEEECCCc
Q 016688 291 PKGEITVLVEGKAI 304 (384)
Q Consensus 291 ~kGe~vlII~G~~~ 304 (384)
++.+++.|+.|...
T Consensus 190 p~rP~vaIlGGaKv 203 (401)
T PLN02282 190 PKKPFAAIVGGSKV 203 (401)
T ss_pred CCCCeEEEEcCCcH
Confidence 46788888888765
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=42.24 E-value=2.3e+02 Score=24.65 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhh---CCEEEEcCCCCc-HHHHhhcCC-CCcE--EecCCcchhhHHHHHHHHHhC
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKS---ANVILSEDTRHS-GKLLQYYNI-KTPL--LSYHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~---ADvI~~edtr~s-~~LL~~~~i-~~~l--is~~~~ne~~~~~~Ii~~l~~ 152 (384)
++.-.++|+.+|+..++-..-...+-+ .++|+.- ..++ .++++.... +... +|+..........++++.+++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG-~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG-VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 455679999999999988776655533 4566663 4443 555554322 2223 343222233445556666653
Q ss_pred C-C-eEEEEccCCCCCCCcc-hHHHHHHhhhCCCCEEEEcCcc
Q 016688 153 G-E-IVALISDAGTPGISDP-GTELAKLCVDEKIPVVPIPGAS 192 (384)
Q Consensus 153 G-k-~VallSdaGDP~I~dp-g~~Lv~~l~~~gi~V~vIPGiS 192 (384)
. . ++-++ ..|.+.+.+- ..+..+.+++.|+...--||.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCC
Confidence 2 2 45444 4687766332 2456677888887655555543
No 60
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=42.03 E-value=1.7e+02 Score=24.63 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred hhHHHHHHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHH
Q 016688 96 ITLRALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTEL 174 (384)
Q Consensus 96 ITlrAl~~L~~-ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~L 174 (384)
+....++.|++ .++.++. ......+.+.+. +...+...... ...+++++.+.+=|-|+..+ +|--.| -
T Consensus 7 ~~~~~~~~l~~~~~v~~~~-~~~~~~~~~~l~-~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~-~G~d~i------d 75 (133)
T PF00389_consen 7 LPDEEIERLEEGFEVEFCD-SPSEEELAERLK-DADAIIVGSGT--PLTAEVLEAAPNLKLISTAG-AGVDNI------D 75 (133)
T ss_dssp -SHHHHHHHHHTSEEEEES-SSSHHHHHHHHT-TESEEEESTTS--TBSHHHHHHHTT-SEEEESS-SSCTTB-------
T ss_pred CCHHHHHHHHCCceEEEeC-CCCHHHHHHHhC-CCeEEEEcCCC--CcCHHHHhccceeEEEEEcc-cccCcc------c
Confidence 56677788888 7777775 333333434333 23333222211 12345666665445566664 565333 3
Q ss_pred HHHhhhCCCCEEEEcCccHHHHHHHH
Q 016688 175 AKLCVDEKIPVVPIPGASAFVAALSA 200 (384)
Q Consensus 175 v~~l~~~gi~V~vIPGiSS~~aA~a~ 200 (384)
+.++.++||.|.-.||.++-..|=..
T Consensus 76 ~~~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCcCCcchhccc
Confidence 68889999999999999886655444
No 61
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=41.17 E-value=58 Score=32.57 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=43.0
Q ss_pred cchhHHHHHHHhhCCEEEEc-CCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc-cCCCCCCCcch
Q 016688 94 EDITLRALRVLKSANVILSE-DTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS-DAGTPGISDPG 171 (384)
Q Consensus 94 ~dITlrAl~~L~~ADvI~~e-dtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS-daGDP~I~dpg 171 (384)
---+..++++|++||+|+-- .+.. -... |.+ ..+.|.+++++ ..|++|| -.|+--+++|.
T Consensus 170 a~a~peal~AI~~AD~IIlGPgsp~-----TSI~---P~L---------lVpgIreAL~~-a~vV~Vspiig~~~v~GpA 231 (297)
T TIGR01819 170 ASIAPKVLEAIRKEDNILIGPSNPI-----TSIG---PIL---------SLPGIREALRD-KKVVAVSPIVGNAPVSGPA 231 (297)
T ss_pred CCCCHHHHHHHHhCCEEEECCCccH-----HHhh---hhc---------CchhHHHHHHc-CCEEEEccCcCCCcCCChH
Confidence 45688999999999976653 2211 1111 111 13446666776 7788777 44666888898
Q ss_pred HHHHHHh
Q 016688 172 TELAKLC 178 (384)
Q Consensus 172 ~~Lv~~l 178 (384)
..+..+.
T Consensus 232 ~~~m~a~ 238 (297)
T TIGR01819 232 GKLMAAV 238 (297)
T ss_pred HHHHHHc
Confidence 8887664
No 62
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=38.68 E-value=77 Score=31.96 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=54.7
Q ss_pred ecCCCCccchhHHHHHHHhhC--------CEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 87 ATPIGNLEDITLRALRVLKSA--------NVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 87 GtGpGnp~dITlrAl~~L~~A--------DvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
|+.--|++.+..||++.|++. |+-+||-|-| -|.|+-..-...++..-+..++..+..++.|-+++-
T Consensus 91 gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~h-----GHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVA 165 (322)
T PRK13384 91 GSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDH-----GHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLA 165 (322)
T ss_pred cccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCC-----CceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEe
Confidence 444457889999999999994 5555554443 233321110000111113345566677889999988
Q ss_pred EccCCCCCCCcchHHHHHHhhhCCC
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~gi 183 (384)
-|| +.-++-..+.+.+.++|+
T Consensus 166 PSd----MMDGrV~aIR~aLd~~g~ 186 (322)
T PRK13384 166 PSA----MMDGQVKAIRQGLDAAGF 186 (322)
T ss_pred ccc----ccccHHHHHHHHHHHCCC
Confidence 875 445777888888888887
No 63
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=38.16 E-value=2.7e+02 Score=29.84 Aligned_cols=107 Identities=10% Similarity=0.032 Sum_probs=67.2
Q ss_pred eEEEEecCCCCccc-hhHHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-ecCCcchhhHHHHHHHHHhC-CCeEE
Q 016688 82 GLYLVATPIGNLED-ITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQ-GEIVA 157 (384)
Q Consensus 82 ~LyiVGtGpGnp~d-ITlrAl~~L~~A-DvI~~edtr~s~~LL~~~~i~~~li-s~~~~ne~~~~~~Ii~~l~~-Gk~Va 157 (384)
.+.=||.+++.|+. --..+++.+++. |+.++=||..+..+-..+.....++ +.... ..+.+...+.+ |-.++
T Consensus 180 DIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~----~~d~~~~l~a~~g~~vV 255 (499)
T TIGR00284 180 DMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVE----NAVELASEKKLPEDAFV 255 (499)
T ss_pred CEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCcc----chhHHHHHHHHcCCeEE
Confidence 57788998887752 245778888876 8888889988766655554455655 33222 23344444433 66677
Q ss_pred EEccCCCCCCCcchHHHHHHhhhCCC-CEEEEcCccH
Q 016688 158 LISDAGTPGISDPGTELAKLCVDEKI-PVVPIPGASA 193 (384)
Q Consensus 158 llSdaGDP~I~dpg~~Lv~~l~~~gi-~V~vIPGiSS 193 (384)
++. ...+--++-..+.++.+.+.|+ ++.+=||+..
T Consensus 256 lm~-~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 256 VVP-GNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP 291 (499)
T ss_pred EEc-CCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc
Confidence 774 2211112334567788888999 7788888875
No 64
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=38.06 E-value=1.9e+02 Score=27.67 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=46.1
Q ss_pred eEEEEecCCCCcc----------chhHHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEE-ecCCcchhhHHHHHHHH
Q 016688 82 GLYLVATPIGNLE----------DITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNR 149 (384)
Q Consensus 82 ~LyiVGtGpGnp~----------dITlrAl~~L~~A-DvI~~edtr~s~~LL~~~~i~~~li-s~~~~ne~~~~~~Ii~~ 149 (384)
.+.=||.+..+|+ .-=..+++.|++. ++.++=||..+.-+-..+....+++ +....+.. +++++.
T Consensus 39 diIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~---~~~~~l 115 (258)
T cd00423 39 DIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGRGD---PEMAPL 115 (258)
T ss_pred CEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHH
Confidence 4666777777664 2233566777655 8888889988755544444445665 22222221 334443
Q ss_pred Hh-CCCeEEEEccCCCCC
Q 016688 150 LK-QGEIVALISDAGTPG 166 (384)
Q Consensus 150 l~-~Gk~VallSdaGDP~ 166 (384)
++ -|-.|+++...|+|.
T Consensus 116 ~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 116 AAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred HHHcCCCEEEECcCCCCc
Confidence 33 255677775456654
No 65
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=38.03 E-value=73 Score=25.92 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=30.9
Q ss_pred HHHHHCCC----CHHHHHHHHHHHhCCCccCChhHHHHHhhh
Q 016688 320 RGLISAGH----NLSMVTTTLVVFTFHIAVCPNKFLFCRISY 357 (384)
Q Consensus 320 ~~l~~~g~----~~k~a~k~~a~~~g~~~~~~~~~ly~~~~~ 357 (384)
.+|++.|+ ..|+-...+.+..|+ |-||.|-|+.||.+
T Consensus 34 ~dL~~~GL~g~~~s~~rR~~l~~~L~i-Gy~N~KqllkrLN~ 74 (87)
T PF13331_consen 34 EDLIELGLIGGPDSKERREKLGEYLGI-GYGNAKQLLKRLNM 74 (87)
T ss_pred HHHHHCCCCCCccHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Confidence 34555565 677888899999999 99999999999986
No 66
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.76 E-value=3e+02 Score=24.64 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCC-CeEEEEccCCCCCCCcchHHHHHHhhh
Q 016688 102 RVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPGTELAKLCVD 180 (384)
Q Consensus 102 ~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~G-k~VallSdaGDP~I~dpg~~Lv~~l~~ 180 (384)
+++++||++++ |...-..+.+..+...+ +..+..+....+++.+.+. .+|.++ .|+|.+- ..+.+.+++
T Consensus 1 ~~~~~adlv~~-DG~~i~~~~~~~g~~~~----~rv~g~dl~~~l~~~~~~~~~~ifll--G~~~~~~---~~~~~~l~~ 70 (172)
T PF03808_consen 1 EALNSADLVLP-DGMPIVWAARLLGRPLP----ERVTGSDLFPDLLRRAEQRGKRIFLL--GGSEEVL---EKAAANLRR 70 (172)
T ss_pred ChHHhCCEEec-CCHHHHHHHHHcCCCCC----cccCHHHHHHHHHHHHHHcCCeEEEE--eCCHHHH---HHHHHHHHH
Q ss_pred C--CCCEE-EEcC---ccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEE
Q 016688 181 E--KIPVV-PIPG---ASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (384)
Q Consensus 181 ~--gi~V~-vIPG---iSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVl 237 (384)
. |+++. ..+| .......+....-.-.++.++|.-..+..............+-.+.+
T Consensus 71 ~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 71 RYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGV 133 (172)
T ss_pred HCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
No 67
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=37.54 E-value=69 Score=35.04 Aligned_cols=61 Identities=15% Similarity=-0.003 Sum_probs=40.4
Q ss_pred HHHHHhhhcCCceEEEecCchh---H-HHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHH
Q 016688 222 TERLMLSANEVKTQIFYVPPHK---L-LQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAF 286 (384)
Q Consensus 222 ~~~L~~l~~~~~TlVlye~p~r---i-~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~ 286 (384)
.+.+.++++....+|..|...- . ..+++.|.+ .+.. .=+.+++-++|-+-.|+.+++.+.+
T Consensus 543 ~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~-~~~~---~~v~~lglpd~fi~hg~~~el~~~~ 607 (627)
T COG1154 543 EALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAA-HGIL---VPVLNLGLPDEFIDHGSPEELLAEL 607 (627)
T ss_pred HHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHh-cCCC---CceEEecCChHhhccCCHHHHHHHc
Confidence 3567888888888888876532 2 234444433 2222 3357799999999999999887763
No 68
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.45 E-value=83 Score=29.91 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~a 196 (384)
|...+.+| .|.|++..-...+++++++.|+++.+.-.-+-...
T Consensus 72 ~~~~V~lT-GGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 72 TPLHVSLS-GGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred CCCeEEEe-CCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 34445564 89999997678999999999999999888876554
No 69
>PRK05443 polyphosphate kinase; Provisional
Probab=37.06 E-value=1.5e+02 Score=33.14 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=54.7
Q ss_pred HHHHHhhCCEEEEcCCCCc-H---HHHhhcCCCCcEE-----ecCCcchhhHHHHHHHHHhCCCeEEEEccCCCC-CCCc
Q 016688 100 ALRVLKSANVILSEDTRHS-G---KLLQYYNIKTPLL-----SYHKFNESQREQTVLNRLKQGEIVALISDAGTP-GISD 169 (384)
Q Consensus 100 Al~~L~~ADvI~~edtr~s-~---~LL~~~~i~~~li-----s~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP-~I~d 169 (384)
-.++|++=|+++... +++ . ++++....+..+. -|.-.......+.+++++++|++|-++. .+-+ ....
T Consensus 332 if~~I~~~DiLLh~P-Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlv-e~karfde~ 409 (691)
T PRK05443 332 IFAAIREKDILLHHP-YESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLV-ELKARFDEE 409 (691)
T ss_pred HHHHHhhCCEEEECC-ccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEE-ccCccccHH
Confidence 467899999999974 554 2 3344333332222 2332334678899999999999998885 4444 3333
Q ss_pred chHHHHHHhhhCCCCE
Q 016688 170 PGTELAKLCVDEKIPV 185 (384)
Q Consensus 170 pg~~Lv~~l~~~gi~V 185 (384)
......+.+.++|+.|
T Consensus 410 ~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 410 ANIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4456677888899877
No 70
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=36.13 E-value=2.2e+02 Score=28.50 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhC--CCeEEEEccCCCCCCCcc--hHHHHHHhhh
Q 016688 140 SQREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (384)
Q Consensus 140 ~~~~~~Ii~~l~~--Gk~VallSdaGDP~I~dp--g~~Lv~~l~~ 180 (384)
.+..+++++.+++ |-+-+++| .|||++... -.++++.+.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~ls-GGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILIS-GGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEE-CCccccCCHHHHHHHHHHHHh
Confidence 3456667777753 44455664 899998764 4566777665
No 71
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=36.09 E-value=55 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHH-HhhhhHHHHHHH
Q 016688 313 DQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFC-RISYRTFFFLFL 365 (384)
Q Consensus 313 ~~~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~-~~~~~~~~~~~~ 365 (384)
.++.+.+++.+++|.|-.+..+..-+.||- .+||+ ..+..|++..+.
T Consensus 60 ~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG~------~Vly~Pp~~~~t~~LW~~ 107 (126)
T TIGR03147 60 YDLRHEVYSMVNEGKSNQQIIDFMTARFGD------FVLYNPPFKWQTLLLWLL 107 (126)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCC------eEEecCCCCcchHHHHHH
Confidence 457788899999999999999999999998 67888 777767654443
No 72
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=35.84 E-value=38 Score=23.32 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=16.8
Q ss_pred HCCCCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 324 SAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 324 ~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
..+-+.. .+|+..|+ +|+.||.|+.
T Consensus 16 ~~~gn~~----~aA~~Lgi----sr~tL~~klk 40 (42)
T PF02954_consen 16 RCGGNVS----KAARLLGI----SRRTLYRKLK 40 (42)
T ss_dssp HTTT-HH----HHHHHHTS-----HHHHHHHHH
T ss_pred HhCCCHH----HHHHHHCC----CHHHHHHHHH
Confidence 3444554 55677799 9999999875
No 73
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=35.55 E-value=70 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhCC
Q 016688 315 LEKELRGLISAGHNLSMVTTTLVVFTFH 342 (384)
Q Consensus 315 ~~~~~~~l~~~g~~~k~a~k~~a~~~g~ 342 (384)
+.+.+..|++.|.+.|.|.+.|+..+++
T Consensus 6 A~~Dl~yLLnRGY~~k~al~fVgnhy~L 33 (58)
T PF04256_consen 6 AAEDLRYLLNRGYPKKSALEFVGNHYRL 33 (58)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHhccC
Confidence 4456788999999999999999999999
No 74
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=34.84 E-value=3.3e+02 Score=28.20 Aligned_cols=105 Identities=21% Similarity=0.212 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCC---CCCcc--hHHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE--
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTP---GISDP--GTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV-- 211 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP---~I~dp--g~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi-- 211 (384)
.+..+.|-..+++|-+|+++|--|-| ...+. -..+++++.+ .|.+|.-+|...--.+--....+...++..+
T Consensus 34 ~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLEN 113 (384)
T PF00162_consen 34 RAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGEEAEEAIESLKPGEILLLEN 113 (384)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCHHHHHHHhccCCCCEEEEee
Confidence 45567777778889999999999999 43331 1233344433 3778888997643233333344555555544
Q ss_pred -EeccCCc----chhHHHHHhhhcCCceEEE--ecCchhH
Q 016688 212 -GFLPKHA----RSRTERLMLSANEVKTQIF--YVPPHKL 244 (384)
Q Consensus 212 -Gflp~~~----~~~~~~L~~l~~~~~TlVl--ye~p~ri 244 (384)
-|.+... .......+.++...+..|. |...||.
T Consensus 114 lRf~~eE~~~~~~~~~~f~~~LA~l~DvyVNDAFg~aHR~ 153 (384)
T PF00162_consen 114 LRFYPEEEGKKEKNDTEFARKLASLADVYVNDAFGTAHRA 153 (384)
T ss_dssp GGGSTTTTSEEHHTHHHHHHHHHTT-SEEEEESGGGTTS-
T ss_pred eccccccccccccccHHHHHHHHHhCCEEEEcCccchhcC
Confidence 3445554 3444555667776666553 3344553
No 75
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=34.68 E-value=2.1e+02 Score=27.71 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEEe-cCCcchhhHHHHHHHHHh-CCCeEEEEccCCCCCC
Q 016688 100 ALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLK-QGEIVALISDAGTPGI 167 (384)
Q Consensus 100 Al~~L~~A-DvI~~edtr~s~~LL~~~~i~~~lis-~~~~ne~~~~~~Ii~~l~-~Gk~VallSdaGDP~I 167 (384)
+++.|++. |+.++=||..+.-+-..+.....++- ....+.. +++++.++ -|-.|+++...|.|--
T Consensus 67 ~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~---~~~~~l~~~~~~~vV~m~~~g~p~~ 134 (257)
T cd00739 67 VLEALRGELDVLISVDTFRAEVARAALEAGADIINDVSGGSDD---PAMLEVAAEYGAPLVLMHMRGTPKT 134 (257)
T ss_pred HHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCC---hHHHHHHHHcCCCEEEECCCCCCcc
Confidence 56667665 88899999887555444444456652 3322221 23333333 2567777766688754
No 76
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=34.41 E-value=4.5e+02 Score=25.67 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=66.5
Q ss_pred eEEEEecCCCCccchhHHHHHHHh----hCCEEEEcCCCCcHH---HHhhcCCCCcEEecCCc-----------chhhHH
Q 016688 82 GLYLVATPIGNLEDITLRALRVLK----SANVILSEDTRHSGK---LLQYYNIKTPLLSYHKF-----------NESQRE 143 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~----~ADvI~~edtr~s~~---LL~~~~i~~~lis~~~~-----------ne~~~~ 143 (384)
++-+||.|- |--.-.+.++ .++.++.+|+ ...+ +.+.++.... ...++. ..+...
T Consensus 2 ~vgiVGcGa-----IG~~l~e~v~~~~~~~e~v~v~D~-~~ek~~~~~~~~~~~~~-s~ide~~~~~DlvVEaAS~~Av~ 74 (255)
T COG1712 2 KVGIVGCGA-----IGKFLLELVRDGRVDFELVAVYDR-DEEKAKELEASVGRRCV-SDIDELIAEVDLVVEAASPEAVR 74 (255)
T ss_pred eEEEEeccH-----HHHHHHHHHhcCCcceeEEEEecC-CHHHHHHHHhhcCCCcc-ccHHHHhhccceeeeeCCHHHHH
Confidence 355777763 2223445555 6888888874 3322 2333333211 111111 113334
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchH--HHHHHhhhCCCCEEEEcCccHHHHHH-HHc-CCCCCcEEEEEe
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGT--ELAKLCVDEKIPVVPIPGASAFVAAL-SAS-GLATDEFTFVGF 213 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~--~Lv~~l~~~gi~V~vIPGiSS~~aA~-a~s-Glp~~~f~fiGf 213 (384)
+...+.|++|.+|.++| .| .++|++. ++...++..|-++.+.+|+---.=++ |.. | -..++...+.
T Consensus 75 e~~~~~L~~g~d~iV~S-VG--ALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar~g-~i~~V~lttr 144 (255)
T COG1712 75 EYVPKILKAGIDVIVMS-VG--ALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAAARVG-GIEEVVLTTR 144 (255)
T ss_pred HHhHHHHhcCCCEEEEe-ch--hccChHHHHHHHHHHhcCCcEEEecCccchhHHHHHHhhcC-CeeEEEEEee
Confidence 55667789999999998 45 3457663 34455666788999999975443333 333 3 2455665543
No 77
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=34.22 E-value=97 Score=31.31 Aligned_cols=88 Identities=18% Similarity=0.141 Sum_probs=56.5
Q ss_pred ecCCCCccchhHHHHHHHhhC--------CEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 87 ATPIGNLEDITLRALRVLKSA--------NVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 87 GtGpGnp~dITlrAl~~L~~A--------DvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
|+---|++.+..||++.|+++ |+-+||-|-| -|.|+-.+-...++..-+..++..+..++.|-+++-
T Consensus 89 gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~h-----GHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVA 163 (323)
T PRK09283 89 GSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSH-----GHCGILEDGYVDNDETLELLAKQALSQAEAGADIVA 163 (323)
T ss_pred cccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCC-----CceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 334457888899999999994 7777776654 233432110001111123445566677889999988
Q ss_pred EccCCCCCCCcchHHHHHHhhhCCC
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~gi 183 (384)
-|| +.-++-..+.+.+.++|+
T Consensus 164 PSd----MMDGrV~aIR~aLd~~g~ 184 (323)
T PRK09283 164 PSD----MMDGRVGAIREALDEAGF 184 (323)
T ss_pred ccc----ccccHHHHHHHHHHHCCC
Confidence 875 445777888888888887
No 78
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=33.68 E-value=2.4e+02 Score=22.23 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=44.1
Q ss_pred HHHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchh--hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHH
Q 016688 101 LRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES--QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL 177 (384)
Q Consensus 101 l~~L~~-ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~--~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~ 177 (384)
.+.+++ .+.++- |.|.....-...-...--+++.+.... +..+.....+..++.|+++|..|. +.....+.
T Consensus 7 ~~~l~~~~~~~li-DvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~-----rs~~aa~~ 80 (100)
T cd01523 7 YARLLAGQPLFIL-DVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEG-----SSQFVAEL 80 (100)
T ss_pred HHHHHcCCCcEEE-EeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCC-----cHHHHHHH
Confidence 344554 466776 788754432211112212233221110 001233445556788999987663 44666777
Q ss_pred hhhCCCCEEEEcC
Q 016688 178 CVDEKIPVVPIPG 190 (384)
Q Consensus 178 l~~~gi~V~vIPG 190 (384)
+.+.|+++..+.|
T Consensus 81 L~~~G~~~~~l~G 93 (100)
T cd01523 81 LAERGYDVDYLAG 93 (100)
T ss_pred HHHcCceeEEeCC
Confidence 7788887666655
No 79
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=33.46 E-value=1.8e+02 Score=29.69 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCC-CeEEEEccCCCCCCCcch--HHHHHHhhhCCC
Q 016688 107 ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPG--TELAKLCVDEKI 183 (384)
Q Consensus 107 ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~G-k~VallSdaGDP~I~dpg--~~Lv~~l~~~gi 183 (384)
--+|+.|.. ....-|+.+++....+......-.+-++.|+ +.| ++|++.+ ||--.+.+ ..+++.++++|+
T Consensus 24 ~~~ilveg~-~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii---~~gi~rVVi~~---D~d~~G~~~~~~~~~~L~~aGi 96 (360)
T PRK14719 24 GIPILVEGP-NDILSLKNLKINANFITVSNTPVFQIADDLI---AENISEVILLT---DFDRAGRVYAKNIMEEFQSRGI 96 (360)
T ss_pred CCEEEEEcc-hHHHHHHHcCCCCcEEEEeCCchHHHHHHHH---HcCCCEEEEEE---CCCCCCCccchHHHHHHHHCCC
Confidence 357888874 4456778999987776554433233344444 346 7899885 44435544 567888999999
Q ss_pred CEE
Q 016688 184 PVV 186 (384)
Q Consensus 184 ~V~ 186 (384)
+|.
T Consensus 97 ~V~ 99 (360)
T PRK14719 97 KVN 99 (360)
T ss_pred EEE
Confidence 884
No 80
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=32.62 E-value=5.5e+02 Score=26.72 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCC-CCCcch---HHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTP-GISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV--- 211 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP-~I~dpg---~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi--- 211 (384)
....+.|-..+++|-+|+++|--|-| . .++. ....+++.+ .|.+|.-+|..-.-.+--+...+...++..+
T Consensus 36 ~~~lpTI~~l~~~gakvvl~sH~gRP~g-~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~i~~l~~G~ilLLEN~ 114 (389)
T PRK00073 36 RAALPTIKYLLEKGAKVILLSHLGRPKG-EDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREAIAALKDGEVLLLENV 114 (389)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCCCC-CCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEecc
Confidence 44556777777889999999989989 4 3322 223333433 3667777776543333333445555454433
Q ss_pred EeccCCcchhHHHHHhhhcCCceEEE--ecCchhHH
Q 016688 212 GFLPKHARSRTERLMLSANEVKTQIF--YVPPHKLL 245 (384)
Q Consensus 212 Gflp~~~~~~~~~L~~l~~~~~TlVl--ye~p~ri~ 245 (384)
-|.+.........-+.++...+..|- |...||..
T Consensus 115 Rf~~~E~~~d~~~a~~LA~l~DiyVNDAFg~aHR~h 150 (389)
T PRK00073 115 RFNKGEEKNDPELAKKLASLGDVFVNDAFGTAHRAH 150 (389)
T ss_pred CcCcccccCHHHHHHHHHHhCCEEEECchhhhhhcc
Confidence 22233322222334455555554442 44446643
No 81
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=32.34 E-value=1.1e+02 Score=27.29 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.5
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCcc
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiS 192 (384)
.+.++ .|+|+++.....+++.+++.|+.+.+....+
T Consensus 65 ~i~~s-GGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 65 GVVIT-GGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred eEEEE-CCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 44564 7999998777788999988888777765554
No 82
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=32.29 E-value=2.1e+02 Score=28.87 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=41.2
Q ss_pred HHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhC
Q 016688 102 RVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE 181 (384)
Q Consensus 102 ~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~ 181 (384)
+.++.+.+++. .. .+.+.|+.+|+....++ .+.+.+..++.+......|++|.+. -+|-+.=.+....+.+.+.+.
T Consensus 94 ~~l~~~~i~aV-G~-~Ta~aL~~~G~~~~~~p-~~~~~e~L~~~l~~~~~~g~~vli~-~~~~~~~~~~~~~L~~~L~~~ 169 (381)
T PRK07239 94 EALSSARLLAR-GP-KATGAIRAAGLREEWSP-ASESSAEVLEYLLEEGVAGKRIAVQ-LHGATDEWEPLPEFLEALRAA 169 (381)
T ss_pred HHHcCCeEEEE-Cc-cHHHHHHHcCCCCccCC-CCCccHHHHHHHhcCCCCCCEEEEE-cCCCccccCchHHHHHHHHHC
Confidence 33444444433 21 23455566665433322 2223334444444333457787776 355111111134677888888
Q ss_pred CCCEEEEc
Q 016688 182 KIPVVPIP 189 (384)
Q Consensus 182 gi~V~vIP 189 (384)
|+.|+.+|
T Consensus 170 G~~V~~~~ 177 (381)
T PRK07239 170 GAEVVPVP 177 (381)
T ss_pred CCEEEEeC
Confidence 87776655
No 83
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.18 E-value=4.8e+02 Score=25.28 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=16.4
Q ss_pred CCCEEEEcCccHHHHHHHHcCCCCCcEEE
Q 016688 182 KIPVVPIPGASAFVAALSASGLATDEFTF 210 (384)
Q Consensus 182 gi~V~vIPGiSS~~aA~a~sGlp~~~f~f 210 (384)
.+-++++|-..++. .+-.+|+|..++..
T Consensus 152 ~~~~RvLP~~~~l~-~~~~~G~~~~~iia 179 (256)
T TIGR00715 152 VVFVRVLPYPQALA-QALKLGFPSDRIIA 179 (256)
T ss_pred eEEEEECCCchhhH-HHHHcCCChhcEEE
Confidence 35566666665555 55666766555443
No 84
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=31.15 E-value=1.9e+02 Score=30.77 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=31.0
Q ss_pred CceEEEEec-hhhHHHHHHcCCCCCcEEEEEECCCccc-----CCCCChHHHHHHHHHHHHCCCCHHHHHHHH
Q 016688 270 MHEEFWRGT-LGEAKEAFSSHQPKGEITVLVEGKAICV-----VETPSEDQLEKELRGLISAGHNLSMVTTTL 336 (384)
Q Consensus 270 ~~E~i~~gt-l~eL~~~~~~~~~kGe~vlII~G~~~~~-----~~~~~~~~~~~~~~~l~~~g~~~k~a~k~~ 336 (384)
-|..|+||| ...+.+.+.+.+ .-|.-+-|..+.... .+.++. ++|++.+.+.+++++.+
T Consensus 354 VDDSIVRGTTsr~IV~mlReAG-AkEVHvriasP~i~~Pc~YGID~pt~-------~eLIA~~~~~eeI~~~I 418 (470)
T COG0034 354 VDDSIVRGTTSRRIVQMLREAG-AKEVHVRIASPPIRYPCFYGIDMPTR-------EELIAANRTVEEIRKAI 418 (470)
T ss_pred EccccccCccHHHHHHHHHHhC-CCEEEEEecCCCccCCCccccCCCCH-------HHHhhCCCCHHHHHHHh
Confidence 578888887 556666665544 345333333332211 122221 45677777766666554
No 85
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.68 E-value=7.3e+02 Score=27.29 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=59.5
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-EEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~-lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
...+.|+|.|- .+..=+|+.+.-.+--.|..-|... +..+.... +-.++ ..+ .+.+++..... .+.+
T Consensus 116 ~~r~lIiGAG~--ag~~l~r~~~~~~~~~pV~fiDdd~-----~~~g~~i~Gv~V~g---~~~-i~~~v~~~~~~-~iii 183 (588)
T COG1086 116 RIRLLIIGAGS--AGDLLLRALRRDPEYTPVAFLDDDP-----DLTGMKIRGVPVLG---RIE-IERVVEELGIQ-LILI 183 (588)
T ss_pred CCceEEEcCch--HHHHHHHHHHhCCCcceEEEECCCh-----hhcCCEEeceeeec---hhH-HHHHHHHcCCc-eEEE
Confidence 35788998875 4556667776665544444444322 11111100 11122 223 66677776544 2222
Q ss_pred EccCCCCCCCcch-HHHHHHhhhCCCCEEEEcCccHHHH
Q 016688 159 ISDAGTPGISDPG-TELAKLCVDEKIPVVPIPGASAFVA 196 (384)
Q Consensus 159 lSdaGDP~I~dpg-~~Lv~~l~~~gi~V~vIPGiSS~~a 196 (384)
. -|.++.-. .++.+.|.+.|+.|.+.|++..+..
T Consensus 184 A----ips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~ 218 (588)
T COG1086 184 A----IPSASQEERRRILLRLARTGIAVRILPQLTDLKD 218 (588)
T ss_pred e----cCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH
Confidence 2 16666533 6678889999999999999998877
No 86
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=1.2e+02 Score=28.54 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHHHHhC---CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcC
Q 016688 142 REQTVLNRLKQ---GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (384)
Q Consensus 142 ~~~~Ii~~l~~---Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPG 190 (384)
.+++|++.+++ +..-+.+| .|.|++..--..|++.+++.|+++.+--+
T Consensus 57 ~~~~I~~~i~~~~~~~~~V~lT-GGEP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 57 SADEILADIKSLGYKARGVSLT-GGEPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred CHHHHHHHHHhcCCCcceEEEe-CCcCCCcccHHHHHHHHHhCCceEEecCC
Confidence 34555555543 22333443 99998887789999999999988876553
No 87
>COG2964 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.37 E-value=86 Score=30.01 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 317 KELRGLISAG-HNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 317 ~~~~~l~~~g-~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
+.++.|-++| ...|+|+..||+..|+ +|...|.=|.
T Consensus 177 eiV~~L~EkGiF~lK~Ai~~VA~~L~i----Sr~TVY~YL~ 213 (220)
T COG2964 177 EIVKALYEKGIFNLKDAINIVADRLGI----SRHTVYRYLR 213 (220)
T ss_pred HHHHHHHhcCccchhhHHHHHHHHhCC----ChHHHHHHHH
Confidence 4566777778 8999999999999999 9999997543
No 88
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.16 E-value=4.6e+02 Score=25.45 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCc-chHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEE-EeccCC
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISD-PGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV-GFLPKH 217 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~d-pg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi-Gflp~~ 217 (384)
.+..+++++.+.+-++|.++ | =+-++ ...++-.++..-|.++..+.+...... ..+-+..+++.+. .| ++.
T Consensus 117 ~~~l~~av~~L~~A~rI~~~---G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~--~~~~~~~~Dv~i~iS~-sG~ 189 (281)
T COG1737 117 EEALERAVELLAKARRIYFF---G-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLM--QLALLTPGDVVIAISF-SGY 189 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEE---E-echhHHHHHHHHHHHHHcCCceeEecchHHHHH--HHHhCCCCCEEEEEeC-CCC
Confidence 55677888888888889888 4 22333 346777788888999999999987773 4445555666554 33 444
Q ss_pred cchhHHHHHhhhcCCceEEEecC
Q 016688 218 ARSRTERLMLSANEVKTQIFYVP 240 (384)
Q Consensus 218 ~~~~~~~L~~l~~~~~TlVlye~ 240 (384)
.++..+.++...+.+-++|...+
T Consensus 190 t~e~i~~a~~ak~~ga~vIaiT~ 212 (281)
T COG1737 190 TREIVEAAELAKERGAKVIAITD 212 (281)
T ss_pred cHHHHHHHHHHHHCCCcEEEEcC
Confidence 44444555555555655554443
No 89
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=29.55 E-value=1.8e+02 Score=21.48 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=22.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 319 LRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 319 ~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
+-++++.+.+..++++.+++.|+. ++..+...+
T Consensus 22 Iw~~~~g~~t~~ei~~~l~~~y~~----~~~~~~~dv 54 (68)
T PF05402_consen 22 IWELLDGPRTVEEIVDALAEEYDV----DPEEAEEDV 54 (68)
T ss_dssp HHHH--SSS-HHHHHHHHHHHTT------HHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHcCC----CHHHHHHHH
Confidence 334557789999999999999999 888775544
No 90
>COG4810 EutS Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=29.39 E-value=2.1e+02 Score=24.23 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhh-C-----CCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCC
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-E-----KIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKH 217 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~-~-----gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~ 217 (384)
+++++..--||.|-+. -+|..|+..+...+.- . || ..+-||-.|++++=-+..- .+ .-+||+.+
T Consensus 13 eR~IQEyVPGKQVTLA-----HLIAnP~~dl~~KlGl~~~~~AIGI-lTiTP~EaaiIa~DiA~Ks--g~-v~iGFlDR- 82 (121)
T COG4810 13 ERIIQEYVPGKQVTLA-----HLIANPGEDLAKKLGLDPDAGAIGI-LTITPGEAAIIAGDIATKS--GD-VHIGFLDR- 82 (121)
T ss_pred hHHHHHhCCcceeeHH-----HHHcCCCHHHHHHhCCCCCCCceEE-EEecCchhhhhhhhhhccc--Cc-eEEeeeec-
Confidence 3455556668888876 3677888888766532 1 22 5778888877765333221 12 23477642
Q ss_pred cchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEE
Q 016688 218 ARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIA 264 (384)
Q Consensus 218 ~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~Va 264 (384)
-..++|++.+...+.+.++...+.++.-....+|
T Consensus 83 -------------FsGalvltGdv~aVE~aLkqv~~~L~e~l~ft~c 116 (121)
T COG4810 83 -------------FSGALVLTGDVGAVEEALKQVVSGLGELLNFTLC 116 (121)
T ss_pred -------------ccceEEEEcchHHHHHHHHHHHHHHHHHhceeee
Confidence 3558899988877776666665555543444444
No 91
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=29.38 E-value=1.1e+02 Score=30.77 Aligned_cols=84 Identities=18% Similarity=0.092 Sum_probs=52.2
Q ss_pred CCccchhHHHHHHHhh--------CCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccC
Q 016688 91 GNLEDITLRALRVLKS--------ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (384)
Q Consensus 91 Gnp~dITlrAl~~L~~--------ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSda 162 (384)
-|++.+..||++.|++ +|+-+||-|-| -|.|+-..--..++..-+..++..+..++.|-+|+--||
T Consensus 90 ~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~h-----GHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSd- 163 (320)
T cd04823 90 YNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSH-----GHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSD- 163 (320)
T ss_pred cCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCC-----CcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEccc-
Confidence 4677888999999998 45566655544 233321110000111113345566677889999988875
Q ss_pred CCCCCCcchHHHHHHhhhCCC
Q 016688 163 GTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 163 GDP~I~dpg~~Lv~~l~~~gi 183 (384)
+.-++-..+.+.+.++|+
T Consensus 164 ---MMDGrV~aIR~aLd~~g~ 181 (320)
T cd04823 164 ---MMDGRIGAIREALDAEGF 181 (320)
T ss_pred ---chhhHHHHHHHHHHHCCC
Confidence 344677788888888887
No 92
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.88 E-value=6.1e+02 Score=27.28 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCccchhHHH-HHHHh-hCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCC
Q 016688 91 GNLEDITLRA-LRVLK-SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (384)
Q Consensus 91 Gnp~dITlrA-l~~L~-~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~ 168 (384)
||.++-=.-| .+..+ .+|+|++ .-.+..+++. ....|++..+ .+.-+....+...-+.+.+++++ |.|.+.
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIs--rG~ta~~i~~-~~~iPVv~i~-~s~~Dil~al~~a~~~~~~ia~v---g~~~~~ 109 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVA--GGSNGAYLKS-RLSLPVIVIK-PTGFDVMQALARARRIASSIGVV---THQDTP 109 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEE--CchHHHHHHH-hCCCCEEEec-CChhhHHHHHHHHHhcCCcEEEE---ecCccc
Q ss_pred cchHHH----------------------HHHhhhCCCCEEEEcCccHHHHHHHHcCCC
Q 016688 169 DPGTEL----------------------AKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (384)
Q Consensus 169 dpg~~L----------------------v~~l~~~gi~V~vIPGiSS~~aA~a~sGlp 204 (384)
.....+ ++.+++.|+++.| |.....-.+...|++
T Consensus 110 ~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~vi--G~~~~~~~A~~~gl~ 165 (526)
T TIGR02329 110 PALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVV--GAGLITDLAEQAGLH 165 (526)
T ss_pred HHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEE--CChHHHHHHHHcCCc
No 93
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=28.29 E-value=85 Score=27.47 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHH-HhhhhHHHHHHH
Q 016688 313 DQLEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFC-RISYRTFFFLFL 365 (384)
Q Consensus 313 ~~~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~-~~~~~~~~~~~~ 365 (384)
.++...+++.+++|.|-.|+....-+.||- -+||+ ..+..|++..+.
T Consensus 60 ~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG~------~Vl~~Pp~~~~t~~LW~~ 107 (126)
T PRK10144 60 VSMRHQVYSMVAEGKSEVEIIGWMTERYGD------FVRYNPPLTGQTLVLWAL 107 (126)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCC------eEEecCCCCcchHHHHHH
Confidence 457778899999999999999999999998 67888 666666654433
No 94
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=27.65 E-value=21 Score=34.40 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=42.3
Q ss_pred CcccccchhhHHHHhhhC-CCccccccccchhhhhhhhccc-CCCcccchhhhhhh
Q 016688 1 MRLVQRLPLMANSLATTG-LSKTSWQSRPLLSFLRTQTLLN-SLSLYPKINYLLLC 54 (384)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 54 (384)
|..-+.++.+++.|+..| +.++=|++|.+|.-++--.+.+ +....||||-++..
T Consensus 173 MK~~~~~~~i~~~l~~~g~~~~~~~v~R~~m~~e~i~~l~~~~~~~~~Yfs~ii~~ 228 (234)
T COG2243 173 MKVGRNFEKLRRLLAKLGLLDRAVYVERATMAGEKIVRLAEAERDEKPYFSTILVR 228 (234)
T ss_pred EecCCcHHHHHHHHHhcCCCceEEEEeecCCCCcEEEeccccCcccCCceEEEEEe
Confidence 344567899999999999 7777789999999988777766 55555999966544
No 95
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=26.93 E-value=1.4e+02 Score=29.89 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=41.0
Q ss_pred cchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc-cCCCCCCCcchH
Q 016688 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS-DAGTPGISDPGT 172 (384)
Q Consensus 94 ~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS-daGDP~I~dpg~ 172 (384)
---|..++++|++||+|+--.. . ++-... |.+. .+.|.+++ ....|++|| -.|+--+++|..
T Consensus 173 a~a~p~vl~AI~~AD~IiiGPg-n---p~TSI~---P~L~---------v~gi~eAL-~~a~vV~Vsp~Ig~~~v~GPA~ 235 (303)
T PRK13606 173 AKPAPGVLEAIEEADAVIIGPS-N---PVTSIG---PILA---------VPGIREAL-TEAPVVAVSPIIGGAPVSGPAA 235 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCC-c---cHHhhc---hhcc---------chhHHHHH-hCCCEEEEcCCCCCCcCCChhH
Confidence 4478999999999998876432 1 111111 2121 23355555 456788776 335557788888
Q ss_pred HHHHHh
Q 016688 173 ELAKLC 178 (384)
Q Consensus 173 ~Lv~~l 178 (384)
.+..+.
T Consensus 236 ~lm~a~ 241 (303)
T PRK13606 236 KLMAAI 241 (303)
T ss_pred HHHHHc
Confidence 876654
No 96
>PLN02335 anthranilate synthase
Probab=26.88 E-value=80 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcC
Q 016688 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (384)
Q Consensus 146 Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPG 190 (384)
+++.-++.++|+++ |.||...+ .+++.+++.|++++++|.
T Consensus 11 ~~~~~~~~~~ilvi-D~~dsft~----~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 11 VINSSKQNGPIIVI-DNYDSFTY----NLCQYMGELGCHFEVYRN 50 (222)
T ss_pred hhcccCccCcEEEE-ECCCCHHH----HHHHHHHHCCCcEEEEEC
Confidence 44555677889999 98885554 577777888999999986
No 97
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=26.40 E-value=5.3e+02 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=21.7
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCC-EEEEcCCC
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSAN-VILSEDTR 116 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~AD-vI~~edtr 116 (384)
.++++| |=+ -.-+.+|+++|++|| +|+++.+.
T Consensus 168 ~V~~~~--~~~-~~a~~eaveAI~~AD~IviGPgSl 200 (323)
T COG0391 168 RVRLEG--PEK-PSAAPEAVEAIKEADLIVIGPGSL 200 (323)
T ss_pred EEEEec--CCC-CCCCHHHHHHHHhCCEEEEcCCcc
Confidence 477776 222 345679999999999 55555543
No 98
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=26.40 E-value=2.1e+02 Score=25.16 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=11.2
Q ss_pred CCeEEEEccCCCCCCCc
Q 016688 153 GEIVALISDAGTPGISD 169 (384)
Q Consensus 153 Gk~VallSdaGDP~I~d 169 (384)
.+.+.++|| |.|.-.+
T Consensus 104 ~~~iiliTD-G~~~~~~ 119 (174)
T cd01454 104 RKILLVISD-GEPNDLD 119 (174)
T ss_pred CcEEEEEeC-CCcCccc
Confidence 456888885 8887554
No 99
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=26.09 E-value=2.3e+02 Score=24.95 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=50.3
Q ss_pred HHHhhCCEEEEcCCCCcHHHHhhc-CCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCc----chHHHHH
Q 016688 102 RVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISD----PGTELAK 176 (384)
Q Consensus 102 ~~L~~ADvI~~edtr~s~~LL~~~-~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~d----pg~~Lv~ 176 (384)
+.|+...++..+ .+.+.|+.. |+..+.+ .+++. .. ...+.+.+++|+--.++. .-||.-.. -+..|.+
T Consensus 28 ~ll~Gf~l~AT~---gTa~~L~~~~Gi~v~~v-i~~~~-gg-~~~i~~~I~~g~i~lVIn-t~dp~~~~~~~~D~~~IRR 100 (142)
T PRK05234 28 DLLEQHELYATG---TTGGLIQEATGLDVTRL-LSGPL-GG-DQQIGALIAEGKIDMLIF-FRDPLTAQPHDPDVKALLR 100 (142)
T ss_pred HHhcCCEEEEeC---hHHHHHHhccCCeeEEE-EcCCC-CC-chhHHHHHHcCceeEEEE-ecCCCCCCcccchHHHHHH
Confidence 444455654443 455777777 7765544 22211 11 255788888887655553 33333222 2668889
Q ss_pred HhhhCCCCEE-EEcCccHHHHHHHH
Q 016688 177 LCVDEKIPVV-PIPGASAFVAALSA 200 (384)
Q Consensus 177 ~l~~~gi~V~-vIPGiSS~~aA~a~ 200 (384)
.|.+.++++. -+.++.++..|+.+
T Consensus 101 ~Av~~~IP~~T~l~tA~a~~~al~~ 125 (142)
T PRK05234 101 LADVWNIPVATNRATADFLISSLLF 125 (142)
T ss_pred HHHHcCCCEEcCHHHHHHHHHHHhc
Confidence 9999988762 23333444444333
No 100
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.85 E-value=3.1e+02 Score=27.29 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEE
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVG 212 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiG 212 (384)
.....+.++.++|++.-++..-+.|... |..+.+.+.+.|+++.+||=.+ +.+.... -++.++|
T Consensus 132 tv~~~l~~A~~~~k~~~V~v~EsrP~~~--G~~~a~~L~~~GI~vtlI~Dsa-v~~~m~~-----vd~VivG 195 (310)
T PRK08535 132 AALSVIKTAHEQGKDIEVIATETRPRNQ--GHITAKELAEYGIPVTLIVDSA-VRYFMKD-----VDKVVVG 195 (310)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCchhh--HHHHHHHHHHCCCCEEEEehhH-HHHHHHh-----CCEEEEC
Confidence 3344455555677764333356889766 4788899999999999999844 4444433 3566664
No 101
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=25.85 E-value=3.2e+02 Score=27.13 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEE
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVG 212 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiG 212 (384)
....+..+.++|++.-++..-+-|... |..+.+.+.+.||++..||=. ++.+.... -++.++|
T Consensus 128 v~~~l~~a~~~~~~f~V~v~EsrP~~~--G~~~a~~L~~~gI~vtlI~Ds-a~~~~m~~-----vd~VivG 190 (301)
T TIGR00511 128 ALSVIKTAFEQGKDIEVIATETRPRKQ--GHITAKELRDYGIPVTLIVDS-AVRYFMKE-----VDHVVVG 190 (301)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCcch--HHHHHHHHHHCCCCEEEEehh-HHHHHHHh-----CCEEEEC
Confidence 334455555677764333356889765 478899999999999999874 44444433 3556664
No 102
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=25.65 E-value=4.9e+02 Score=23.28 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=40.6
Q ss_pred EcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHH
Q 016688 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (384)
Q Consensus 188 IPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~ 250 (384)
=|-+-.+..|+...|++.++..|+|- ....+....+.+-..+.+..+..+.+.++.
T Consensus 141 KP~p~~~~~~~~~~~~~p~~~l~vgD-------~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 141 KPEARIYQHVLQAEGFSAADAVFFDD-------NADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred CCCHHHHHHHHHHcCCChhHeEEeCC-------CHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 37788899999999999988888752 123455555667677778777777766654
No 103
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.92 E-value=3.8e+02 Score=21.75 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHhhCCEEEEcCCCCcHHHHhhc-----CCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHH
Q 016688 99 RALRVLKSANVILSEDTRHSGKLLQYY-----NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (384)
Q Consensus 99 rAl~~L~~ADvI~~edtr~s~~LL~~~-----~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~ 173 (384)
++.+.|.+++.|+.-.+..+..+...+ ....+....++..+ ..........+--+.++|..|.+ .....
T Consensus 5 ~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~iS~~g~~---~~~~~ 78 (139)
T cd05013 5 KAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHL---QLMSAANLTPGDVVIAISFSGET---KETVE 78 (139)
T ss_pred HHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHH---HHHHHHcCCCCCEEEEEeCCCCC---HHHHH
Q ss_pred HHHHhhhCCCCEEEE
Q 016688 174 LAKLCVDEKIPVVPI 188 (384)
Q Consensus 174 Lv~~l~~~gi~V~vI 188 (384)
+++.+++.|+++.+|
T Consensus 79 ~~~~a~~~g~~iv~i 93 (139)
T cd05013 79 AAEIAKERGAKVIAI 93 (139)
T ss_pred HHHHHHHcCCeEEEE
No 104
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=24.38 E-value=1e+02 Score=21.50 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=17.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 318 ELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 318 ~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
.+..+.++|+|.++. |+..|. ++..+|..|
T Consensus 12 ~I~~l~~~G~s~~~I----A~~lg~----s~sTV~rel 41 (44)
T PF13936_consen 12 QIEALLEQGMSIREI----AKRLGR----SRSTVSREL 41 (44)
T ss_dssp HHHHHHCS---HHHH----HHHTT------HHHHHHHH
T ss_pred HHHHHHHcCCCHHHH----HHHHCc----CcHHHHHHH
Confidence 456677889998775 566688 888888765
No 105
>PRK01415 hypothetical protein; Validated
Probab=23.89 E-value=5.4e+02 Score=24.93 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=60.0
Q ss_pred EEecCCCC--cc-----chhH-HHHHHHhhCCEEEEcCCCCcHHHHh-hcCCCCcEEecCCcch-hhHHHHHHHHHhCCC
Q 016688 85 LVATPIGN--LE-----DITL-RALRVLKSANVILSEDTRHSGKLLQ-YYNIKTPLLSYHKFNE-SQREQTVLNRLKQGE 154 (384)
Q Consensus 85 iVGtGpGn--p~-----dITl-rAl~~L~~ADvI~~edtr~s~~LL~-~~~i~~~lis~~~~ne-~~~~~~Ii~~l~~Gk 154 (384)
||..|..+ |. .||. .+.+.|++-|+++- |.|.....-. ++. .+.-++.....+ .+..+.. ..+..++
T Consensus 96 iV~~g~~~~~~~~~~g~~i~p~e~~~ll~~~~~vvI-DVRn~~E~~~Ghi~-gAinip~~~f~e~~~~~~~~-~~~~k~k 172 (247)
T PRK01415 96 IVAMNVDDLNVDLFKGEYIEPKDWDEFITKQDVIVI-DTRNDYEVEVGTFK-SAINPNTKTFKQFPAWVQQN-QELLKGK 172 (247)
T ss_pred EEecCCCCCCccccCccccCHHHHHHHHhCCCcEEE-ECCCHHHHhcCCcC-CCCCCChHHHhhhHHHHhhh-hhhcCCC
Confidence 56666543 32 4555 34566777788887 8888644321 111 111112111111 1111111 2234678
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCC-EE-EEcCccHHHHHHHHcCCCCCcEEEE
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIP-VV-PIPGASAFVAALSASGLATDEFTFV 211 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~-V~-vIPGiSS~~aA~a~sGlp~~~f~fi 211 (384)
.|++.|..| -+.......+.+.|+. |. +--|+.+........|--|+.=+|+
T Consensus 173 ~Iv~yCtgG-----iRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~~~~~~~w~G~~fV 226 (247)
T PRK01415 173 KIAMVCTGG-----IRCEKSTSLLKSIGYDEVYHLKGGILQYLEDTQNKNNLWQGECFV 226 (247)
T ss_pred eEEEECCCC-----hHHHHHHHHHHHcCCCcEEEechHHHHHHHhcccCCCeeeeeeee
Confidence 899988665 2334455666778885 54 4455666665444444345543443
No 106
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=23.66 E-value=4e+02 Score=26.84 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=52.2
Q ss_pred hhhhhcccccCCchhhhhhhhhhcCCCCCCCCeEEEEecCCCCccchhHHHHHHHhhCC----EEEEcCCCCcHHHHhhc
Q 016688 50 YLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSAN----VILSEDTRHSGKLLQYY 125 (384)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~LyiVGtGpGnp~dITlrAl~~L~~AD----vI~~edtr~s~~LL~~~ 125 (384)
+-++|++-|.--.+.|-..=.+.... +-.=.+|.+|--||..+|.|-+..|.+-+ +|++....+...+.+.+
T Consensus 131 ~~~~lGp~y~~lr~eF~~~r~~~~~r----~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~ 206 (318)
T COG3980 131 TRYYLGPGYAPLRPEFYALREENTER----PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRA 206 (318)
T ss_pred eEEEecCCceeccHHHHHhHHHHhhc----chheEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHH
Confidence 34577777777789998665554443 11235888998899999999999999887 66664444455566655
Q ss_pred CCCCc
Q 016688 126 NIKTP 130 (384)
Q Consensus 126 ~i~~~ 130 (384)
....+
T Consensus 207 ~~~~~ 211 (318)
T COG3980 207 EKYPN 211 (318)
T ss_pred hhCCC
Confidence 44333
No 107
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=23.27 E-value=6.5e+02 Score=23.91 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHhC-CCeEEEEccCCCCCC--------C-cchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC-c
Q 016688 139 ESQREQTVLNRLKQ-GEIVALISDAGTPGI--------S-DPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-E 207 (384)
Q Consensus 139 e~~~~~~Ii~~l~~-Gk~VallSdaGDP~I--------~-dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~-~ 207 (384)
|.+....|...... .+.|++++ |++-. . .....+...+.+. ..|..+.=. ...+|.+ +
T Consensus 131 E~~lt~aI~~v~~~~~~~V~~l~--ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~--------~~~IP~~~d 199 (271)
T PF09822_consen 131 EYELTSAIRRVTSDEKPKVYFLT--GHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA--------NEEIPDDAD 199 (271)
T ss_pred HHHHHHHHHHHhcccCceEEEEc--cccccccccccccCcchHHHHHHHHHhc-CceeecCCc--------ccccCCCCC
Confidence 45555556555544 35677774 66666 2 2345667777666 888777654 4455443 4
Q ss_pred EEEEEeccCC-c-chhHHHHHhhhcCCceEEEecCch
Q 016688 208 FTFVGFLPKH-A-RSRTERLMLSANEVKTQIFYVPPH 242 (384)
Q Consensus 208 f~fiGflp~~-~-~~~~~~L~~l~~~~~TlVlye~p~ 242 (384)
..++. -|.. - ..-...+++....++.++++..|.
T Consensus 200 ~Lvi~-~P~~~ls~~e~~~l~~yl~~GG~ll~~~d~~ 235 (271)
T PF09822_consen 200 VLVIA-GPKTDLSEEELYALDQYLMNGGKLLILLDPF 235 (271)
T ss_pred EEEEE-CCCCCCCHHHHHHHHHHHHcCCeEEEEECCc
Confidence 44442 1444 1 223456666666666666666664
No 108
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.19 E-value=6e+02 Score=26.27 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhh
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~ 179 (384)
+..+.+.+.++.|..|.++. +|| +.+.+..+.+.+.
T Consensus 422 ~a~~~a~~~a~~gD~vlv~G-~g~--~~~~~~~~~~~l~ 457 (461)
T PRK00421 422 DLAELLAEVLKPGDLVLTMG-AGD--ITKLARALLELLL 457 (461)
T ss_pred HHHHHHHHhcCCCCEEEEEC-CCC--HHHHHHHHHHHHh
Confidence 34444444455444344442 444 5555555555554
No 109
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.09 E-value=7.4e+02 Score=24.47 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=55.4
Q ss_pred CeEEEEecCCCCccchhH--HHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchh---hHHHHHHHHHh-CCC
Q 016688 81 PGLYLVATPIGNLEDITL--RALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNES---QREQTVLNRLK-QGE 154 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITl--rAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~---~~~~~Ii~~l~-~Gk 154 (384)
.++=+.=.|.|+ ||. .+++.|=+.|+|++.|+.. ++|....++ ++.-++.+.+. ++-
T Consensus 6 ~~IgvFDSGVGG---LsVlrei~~~LP~e~~iY~~D~a~--------------~PYG~ks~e~I~~~~~~i~~~l~~~~i 68 (269)
T COG0796 6 PPIGVFDSGVGG---LSVLREIRRQLPDEDIIYVGDTAR--------------FPYGEKSEEEIRERTLEIVDFLLERGI 68 (269)
T ss_pred CeEEEEECCCCc---HHHHHHHHHHCCCCcEEEEecCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457788889887 563 5667788899999999743 123333333 33344555443 444
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhC-CCCE-EEEcCccHHHHHHHHcC
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDE-KIPV-VPIPGASAFVAALSASG 202 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~-gi~V-~vIPGiSS~~aA~a~sG 202 (384)
+.+++ .. ......-++.+++. +++| -++||+.+.... .+.|
T Consensus 69 k~lVI-AC-----NTASa~al~~LR~~~~iPVvGviPaik~A~~~-t~~~ 111 (269)
T COG0796 69 KALVI-AC-----NTASAVALEDLREKFDIPVVGVIPAIKPAVAL-TRNG 111 (269)
T ss_pred CEEEE-ec-----chHHHHHHHHHHHhCCCCEEEeccchHHHHHh-ccCC
Confidence 44444 11 22223344555543 5655 577999865433 4444
No 110
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=23.06 E-value=2.3e+02 Score=27.31 Aligned_cols=71 Identities=25% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCC-CCCcEEEEEe
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGF 213 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGl-p~~~f~fiGf 213 (384)
..+.....++.|++|+..| .|.-.-.+.+..|.+.+++.|..+.+-||.-...-++...-. .++.+++.+.
T Consensus 74 ~~e~~~~aL~aGk~Vvi~s-~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~~~~~g~~~~v~~~~~ 145 (265)
T PRK13303 74 LKEHVVPILKAGIDCAVIS-VGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALAAAKEGGLDEVTYTGR 145 (265)
T ss_pred HHHHHHHHHHcCCCEEEeC-hHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHHHHHhCCceEEEEEEe
Confidence 3566777888999999886 342111223567888888899988887776544433332211 2345555544
No 111
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=22.86 E-value=1.1e+03 Score=26.36 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCC-Cc---chHHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGI-SD---PGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV--- 211 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I-~d---pg~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi--- 211 (384)
....+.|...+++|-+|+++|--|-|.= .+ .-....+.+.+ .|.+|..+|....-.+--+...+...++..+
T Consensus 39 ~~~lpTI~~l~~~gakvvl~SH~gRP~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~GeilLLEN~ 118 (645)
T PRK13962 39 RAALPTIKYLLDHGAKVILVSHLGRPKGEFDPKFSMAPVAKRLSELLGKEVIFAKDVIGDDAKKAVAQLKEGDVLLLENV 118 (645)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCcCccCCHHHHHHHHHHHHCCCeEECCCCCCHHHHHHHhcCCCCcEEEEecc
Confidence 3455677778889999999998898831 12 12233334433 3778888887655444445555555554443
Q ss_pred EeccCCcchhHHHHHhhhcCCceEEE--ecCchhHH
Q 016688 212 GFLPKHARSRTERLMLSANEVKTQIF--YVPPHKLL 245 (384)
Q Consensus 212 Gflp~~~~~~~~~L~~l~~~~~TlVl--ye~p~ri~ 245 (384)
-|.+.........-+.++...+..|- |...||..
T Consensus 119 Rf~~~E~~~d~~~~~~LA~l~DvyVNDAFg~aHR~h 154 (645)
T PRK13962 119 RFHKEETKNDPEFAKELASLADIYVNDAFGTAHRAH 154 (645)
T ss_pred CcCcccccCHHHHHHHHHHhCCEEEechhhhhhhcc
Confidence 23243332233344455555554442 44456643
No 112
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.77 E-value=3e+02 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEE
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~ 186 (384)
..+.+.+..-+-++|+++-+..++.-......+.+.+.+.|+++.
T Consensus 120 ~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~ 164 (294)
T PF04392_consen 120 QLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELV 164 (294)
T ss_dssp HHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEE
Confidence 334343333345788666455544222222333444444565554
No 113
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.39 E-value=7.6e+02 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=26.4
Q ss_pred CeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCc
Q 016688 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 154 k~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGi 191 (384)
++|.++ .|.+.-.+-..++.+.+.+.|+++..+|+.
T Consensus 156 ~~VNli--g~~~~~~~d~~el~~lL~~~Gl~v~~~~~~ 191 (428)
T cd01965 156 GKVNLL--PGFPLTPGDVREIKRILEAFGLEPIILPDL 191 (428)
T ss_pred CeEEEE--CCCCCCccCHHHHHHHHHHcCCCEEEecCc
Confidence 468888 355544333577888888899999999976
No 114
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=22.02 E-value=2.8e+02 Score=28.11 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=52.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh-hCCEEEEcCCCC--cHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEE
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRH--SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~-~ADvI~~edtr~--s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (384)
-++-|||+|.|. .=.+|+..+. .++++..-|... ++++-+.+++. .|.+ .++++ ++-+++
T Consensus 4 ~rVgViG~~~G~---~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~----~y~~------~eell----~d~Di~ 66 (343)
T TIGR01761 4 QSVVVCGTRFGQ---FYLAAFAAAPERFELAGILAQGSERSRALAHRLGVP----LYCE------VEELP----DDIDIA 66 (343)
T ss_pred cEEEEEeHHHHH---HHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCC----ccCC------HHHHh----cCCCEE
Confidence 368899998763 4556777776 688888766322 23455566642 1221 22232 234555
Q ss_pred EEccCCCCCCCcchHHHHHHhhhCCCCEEE
Q 016688 158 LISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (384)
Q Consensus 158 llSdaGDP~I~dpg~~Lv~~l~~~gi~V~v 187 (384)
.| ...++.-.+.+.+++.++.++|..|-+
T Consensus 67 ~V-~ipt~~P~~~H~e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 67 CV-VVRSAIVGGQGSALARALLARGIHVLQ 95 (343)
T ss_pred EE-EeCCCCCCccHHHHHHHHHhCCCeEEE
Confidence 55 344444456667777777777776643
No 115
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=21.91 E-value=4.8e+02 Score=25.77 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC-EEEEcCccHHHHHHHHcCCCCC
Q 016688 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLATD 206 (384)
Q Consensus 149 ~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~-V~vIPGiSS~~aA~a~sGlp~~ 206 (384)
....|-+++++ -.|| ++-.+++..+.+.+.+ +-++|+-| ...-+-.+|+|.+
T Consensus 54 a~~~~~D~via-~GGD----GTv~evingl~~~~~~~LgilP~GT-~NdfAr~Lgip~~ 106 (301)
T COG1597 54 AAVEGYDTVIA-AGGD----GTVNEVANGLAGTDDPPLGILPGGT-ANDFARALGIPLD 106 (301)
T ss_pred HHhcCCCEEEE-ecCc----chHHHHHHHHhcCCCCceEEecCCc-hHHHHHHcCCCch
Confidence 33446777777 4899 5666788888888888 99999998 4555566788763
No 116
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=21.47 E-value=3.4e+02 Score=27.90 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHhhCCEEEEcCCCCc----HHHHhhcCCCCcEEe-----cCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 101 LRVLKSANVILSEDTRHS----GKLLQYYNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 101 l~~L~~ADvI~~edtr~s----~~LL~~~~i~~~lis-----~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
.+.|++-|+++... +++ .++++....+..+.+ |.-......++.+++++++||.|.++-
T Consensus 3 f~~i~~~DiLlh~P-Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~v 70 (352)
T PF13090_consen 3 FEQIRKKDILLHHP-YESFDPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLV 70 (352)
T ss_dssp HHHHHHS-EEEECT-TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEE
T ss_pred hHHhhcCCEEEECC-ccccHHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEE
Confidence 36789999999864 554 345554444444432 443445678899999999999998883
No 117
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.42 E-value=9.6e+02 Score=25.17 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=78.2
Q ss_pred HhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcC-CCCCcEEEE---EeccCCcchhHHHH
Q 016688 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG-LATDEFTFV---GFLPKHARSRTERL 225 (384)
Q Consensus 150 l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sG-lp~~~f~fi---Gflp~~~~~~~~~L 225 (384)
..+|++|++++ .||.=.+....+...+...|+++.+..-+..+..|+.... ..-.++.++ |..+.. .+....+
T Consensus 231 ~~~g~~V~lIt--aDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d-~~~l~EL 307 (407)
T PRK12726 231 LKQNRTVGFIT--TDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA-EESVSEI 307 (407)
T ss_pred HHcCCeEEEEe--CCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC-HHHHHHH
Confidence 46789999993 7887555455666667777888887666666665555443 122367776 333322 2223344
Q ss_pred HhhhcC---CceEEEecCchhHHHHHHHHHH--hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEE
Q 016688 226 MLSANE---VKTQIFYVPPHKLLQFLEETSL--LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE 300 (384)
Q Consensus 226 ~~l~~~---~~TlVlye~p~ri~~~l~~L~e--~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~ 300 (384)
..+.+. ..++++..+.....++.+.+.. .++. ..++ +||-||.-..|.+=.+.... +=++.-+=.
T Consensus 308 ~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i-~glI----~TKLDET~~~G~~Lsv~~~t-----glPIsylt~ 377 (407)
T PRK12726 308 SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPI-DGFI----ITKMDETTRIGDLYTVMQET-----NLPVLYMTD 377 (407)
T ss_pred HHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCC-CEEE----EEcccCCCCccHHHHHHHHH-----CCCEEEEec
Confidence 443321 2223333333444444433322 1222 2222 79999998888877776553 234555555
Q ss_pred CCCc
Q 016688 301 GKAI 304 (384)
Q Consensus 301 G~~~ 304 (384)
|...
T Consensus 378 GQ~V 381 (407)
T PRK12726 378 GQNI 381 (407)
T ss_pred CCCC
Confidence 6654
No 118
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=21.37 E-value=5.1e+02 Score=25.38 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCCeEEEEecCC---CCccchhH-HHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCC
Q 016688 78 PLEPGLYLVATPI---GNLEDITL-RALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG 153 (384)
Q Consensus 78 ~~~g~LyiVGtGp---Gnp~dITl-rAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~G 153 (384)
...|++.||-+|. |.-.-..+ +..+.+++=|+|.+-.+ .+.--+..+++... +.|. ..+..++++..|
T Consensus 155 ~e~G~v~i~~vP~~~~GGsr~~dld~~~el~~s~d~iaAmG~-~a~va~rklgiePd-i~Fg------~~~a~ieAa~rG 226 (260)
T COG1497 155 VEKGEVTIVKVPGVAEGGSRKVDLDRLKELSASEDIIAAMGT-EALVALRKLGIEPD-IEFG------TLEAAIEAAVRG 226 (260)
T ss_pred CCCCeEEEEECCCcccCcccccchHHHHHhhcccchhhhhhH-HHHHHHHHcCCCCC-eeec------ccHHHHHHHhcC
Confidence 3458899998886 33333334 44455566666665443 22233445555422 3332 245577888889
Q ss_pred CeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEE
Q 016688 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (384)
Q Consensus 154 k~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vI 188 (384)
.+|.+++ .+ ....++.+.+.+.|.+++|.
T Consensus 227 l~vlvv~-t~-----~ml~~~~~~l~~~~~eY~V~ 255 (260)
T COG1497 227 LSVLVVI-TR-----RMLRYLLRKLEEEGLEYEVK 255 (260)
T ss_pred CcEEEEE-eH-----HHHHHHHHHHHhcCCccEee
Confidence 9998885 33 34467888888888888664
No 119
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=21.22 E-value=2.5e+02 Score=28.52 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhCCEEEEcCCCCc--HHHHhhc-CCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchH
Q 016688 96 ITLRALRVLKSANVILSEDTRHS--GKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (384)
Q Consensus 96 ITlrAl~~L~~ADvI~~edtr~s--~~LL~~~-~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~ 172 (384)
=+...+++|++||+|+.-. .-+ +..++.+ .-+++.+-....|. -...++...+++++--.=.+-.|+-.+.-|..
T Consensus 125 rS~E~i~Ll~eADIVVTNP-PFSLFrEyv~~Li~~~KkFlIIGN~Na-iTYkeiFplik~nk~WlG~~~~g~~~F~vP~~ 202 (336)
T PF13651_consen 125 RSDECIELLKEADIVVTNP-PFSLFREYVAQLIEYDKKFLIIGNINA-ITYKEIFPLIKENKIWLGYTFRGDMWFRVPDD 202 (336)
T ss_pred CcHHHHHHHhcCCEEEeCC-CcHHHHHHHHHHHHhCCCEEEEecccc-ccHHHHHHHHhcCcEEeccccCCceeeecCCC
Confidence 4578899999999999943 322 2222211 11344333332221 22456777777665432222234444444443
Q ss_pred H
Q 016688 173 E 173 (384)
Q Consensus 173 ~ 173 (384)
+
T Consensus 203 ~ 203 (336)
T PF13651_consen 203 Y 203 (336)
T ss_pred C
Confidence 3
No 120
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.08 E-value=3.5e+02 Score=27.40 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=58.6
Q ss_pred eEEEEecC-----------CCCccchhHHHHHHHhh--------CCEEEEcCCCCcHHHHhhcCCCC-cEEecCCcchhh
Q 016688 82 GLYLVATP-----------IGNLEDITLRALRVLKS--------ANVILSEDTRHSGKLLQYYNIKT-PLLSYHKFNESQ 141 (384)
Q Consensus 82 ~LyiVGtG-----------pGnp~dITlrAl~~L~~--------ADvI~~edtr~s~~LL~~~~i~~-~lis~~~~ne~~ 141 (384)
.+.+.|++ --|++.+-.||++.|++ ||+.+||-|-| -|.|+-. .-...++..-+.
T Consensus 77 av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~H-----GHcGil~~~~~V~ND~Tle~ 151 (330)
T COG0113 77 AVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDH-----GHCGILDDGGYVDNDETLEI 151 (330)
T ss_pred EEEEeCCCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCC-----CccccccCCCeecchHHHHH
Confidence 46666666 33789999999999997 56666766554 2333211 001112212233
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~ 184 (384)
..+..+..++.|-+++--|| +.-+.-..+.+.+.++|..
T Consensus 152 l~k~Avs~AeAGAdivAPSd----MMDGrV~aIR~aLd~ag~~ 190 (330)
T COG0113 152 LAKQAVSQAEAGADIVAPSD----MMDGRVGAIREALDEAGFI 190 (330)
T ss_pred HHHHHHHHHHcCCCeecccc----cccchHHHHHHHHHHcCCC
Confidence 44556677888988877763 4557777888888888753
No 121
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.90 E-value=9.6e+02 Score=24.96 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=73.5
Q ss_pred hCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---EeccCCcchhHHHHHh
Q 016688 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV---GFLPKHARSRTERLML 227 (384)
Q Consensus 151 ~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---Gflp~~~~~~~~~L~~ 227 (384)
+.|++|+++ + .||.=.+....+...+...|+++.+...+..+..++.... -.++.++ |..+.... ....+..
T Consensus 249 ~~g~~V~li-~-~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~-~~~~L~~ 323 (424)
T PRK05703 249 YGKKKVALI-T-LDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKR-LIEELKA 323 (424)
T ss_pred cCCCeEEEE-E-CCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHH-HHHHHHH
Confidence 357899999 3 6764322233455556667899888887777776665543 3466776 43332221 2234444
Q ss_pred hhc----CCceEEEecCchhH---HHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEE
Q 016688 228 SAN----EVKTQIFYVPPHKL---LQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVE 300 (384)
Q Consensus 228 l~~----~~~TlVlye~p~ri---~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~ 300 (384)
+.. ...+.++....... .++++.+.. .+. ..++ +||-||....|.+-++.... +=+..-+=.
T Consensus 324 ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~-~~~-~~vI----~TKlDet~~~G~i~~~~~~~-----~lPv~yit~ 392 (424)
T PRK05703 324 LIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR-LPL-DGLI----FTKLDETSSLGSILSLLIES-----GLPISYLTN 392 (424)
T ss_pred HHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC-CCC-CEEE----EecccccccccHHHHHHHHH-----CCCEEEEeC
Confidence 433 22445555544333 333333322 232 2333 79999988777655555442 223444445
Q ss_pred CCCc
Q 016688 301 GKAI 304 (384)
Q Consensus 301 G~~~ 304 (384)
|...
T Consensus 393 Gq~V 396 (424)
T PRK05703 393 GQRV 396 (424)
T ss_pred CCCC
Confidence 5543
No 122
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=20.56 E-value=1.9e+02 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=24.0
Q ss_pred cCCCCCCCcchHHHHHHhhhCCCCEEEEc
Q 016688 161 DAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi~V~vIP 189 (384)
+.|++.-.+-..++.+.+.+.|+++..+|
T Consensus 7 ~~~m~~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 7 DQLMNGEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred ccccCcccCHHHHHHHHHHHcCCeEEEEe
Confidence 56777666666889999999999999995
No 123
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=20.54 E-value=2.3e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCC----CEEEEcCccHHHHHHHHcCCC
Q 016688 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI----PVVPIPGASAFVAALSASGLA 204 (384)
Q Consensus 148 ~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi----~V~vIPGiSS~~aA~a~sGlp 204 (384)
.......++.++ ..|| ++-.+++..+.+.+. ++-++|+-| ....+-..|++
T Consensus 49 ~~~~~~~~~ivv-~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~GT-~N~~ar~lg~~ 103 (130)
T PF00781_consen 49 LALDDYPDVIVV-VGGD----GTLNEVVNGLMGSDREDKPPLGIIPAGT-GNDFARSLGIP 103 (130)
T ss_dssp HHHTTS-SEEEE-EESH----HHHHHHHHHHCTSTSSS--EEEEEE-SS-S-HHHHHTT--
T ss_pred HhhccCccEEEE-EcCc----cHHHHHHHHHhhcCCCccceEEEecCCC-hhHHHHHcCCC
Confidence 344444245555 4798 555677777776655 788888766 33334445554
No 124
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=20.51 E-value=6.2e+02 Score=22.63 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=37.2
Q ss_pred EcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHH
Q 016688 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (384)
Q Consensus 188 IPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~ 250 (384)
=|.+-.+..++...|++.++..++|- ....+....+.+-..|.+..+....+-|..
T Consensus 152 KP~p~~~~~~~~~~g~~~~~~l~i~D-------~~~di~aA~~aG~~~i~v~~~~~~~~~l~~ 207 (211)
T TIGR02247 152 KPDPRIYQLMLERLGVAPEECVFLDD-------LGSNLKPAAALGITTIKVSDEEQAIHDLEK 207 (211)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEcC-------CHHHHHHHHHcCCEEEEECCHHHHHHHHHH
Confidence 47777899999999998888777742 234555555556666666666555444443
No 125
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=4e+02 Score=23.05 Aligned_cols=81 Identities=15% Similarity=0.293 Sum_probs=50.1
Q ss_pred hCCEEEEcCCCCcHHHHhhcCCCCcEE-ecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC
Q 016688 106 SANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (384)
Q Consensus 106 ~ADvI~~edtr~s~~LL~~~~i~~~li-s~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~ 184 (384)
+.|+++.+|-++.++. +.+. +... ..|... .+++-+.+.++-.+.++ -.|--+.-....+-.+.+++.++.
T Consensus 20 ~~DIvi~~dG~v~rr~-K~ls--krK~GTSHkl~----~eEle~~lee~~E~ivv-GTG~~G~l~l~~ea~e~~r~k~~~ 91 (121)
T COG1504 20 EHDIVIRPDGKVERRE-KELS--KRKYGTSHKLA----LEELEELLEEGPEVIVV-GTGQSGMLELSEEAREFFRKKGCE 91 (121)
T ss_pred cccEEEecCCceehhh-hhhh--hhhcCcccccC----HHHHHHHHhcCCcEEEE-ecCceeEEEeCHHHHHHHHhcCCe
Confidence 4699999986654322 1111 1111 122222 33444555578888888 467777777777777888889998
Q ss_pred EEEEcCccHH
Q 016688 185 VVPIPGASAF 194 (384)
Q Consensus 185 V~vIPGiSS~ 194 (384)
|...|=+-|+
T Consensus 92 vi~~pT~EAi 101 (121)
T COG1504 92 VIELPTPEAI 101 (121)
T ss_pred EEEeCCHHHH
Confidence 9888866544
No 126
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=20.31 E-value=3e+02 Score=27.13 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=29.5
Q ss_pred CCCCHHH----HHHHHHHHhCCC---ccCChhHHHHHhhhh
Q 016688 325 AGHNLSM----VTTTLVVFTFHI---AVCPNKFLFCRISYR 358 (384)
Q Consensus 325 ~g~~~k~----a~k~~a~~~g~~---~~~~~~~ly~~~~~~ 358 (384)
.|+.+|. +++.+|+..|+. ||.++.++|++.-|+
T Consensus 180 hGlrPK~ll~e~l~~la~~~~~~~i~aVsn~~hi~~~~ry~ 220 (288)
T PF04393_consen 180 HGLRPKRLLLEALQALARALGIEQILAVSNKGHIYQSWRYR 220 (288)
T ss_pred cCcCHHHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHhh
Confidence 5999995 678899999986 999999999988883
No 127
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=20.24 E-value=83 Score=26.41 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=17.9
Q ss_pred HHHHHHhCCCccCChhHHHHHhhh
Q 016688 334 TTLVVFTFHIAVCPNKFLFCRISY 357 (384)
Q Consensus 334 k~~a~~~g~~~~~~~~~ly~~~~~ 357 (384)
.++|++.|+ +|..||..||-
T Consensus 53 sqvA~~aGl----sRe~LYkaLS~ 72 (100)
T COG3636 53 SQVARKAGL----SREGLYKALSP 72 (100)
T ss_pred HHHHHHhCc----cHHHHHHHhCC
Confidence 468999999 99999999984
No 128
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=20.15 E-value=7.7e+02 Score=24.93 Aligned_cols=55 Identities=9% Similarity=0.047 Sum_probs=28.4
Q ss_pred CCEEEEcCCCCcHHHHhhcC--CCCcEEec---CCcchhhHHH--HHHHHH----hCCCeEEEEccCCCCC
Q 016688 107 ANVILSEDTRHSGKLLQYYN--IKTPLLSY---HKFNESQREQ--TVLNRL----KQGEIVALISDAGTPG 166 (384)
Q Consensus 107 ADvI~~edtr~s~~LL~~~~--i~~~lis~---~~~ne~~~~~--~Ii~~l----~~Gk~VallSdaGDP~ 166 (384)
+|+|+.-. ... ..+..+. ...|++.. ++|+-+..++ .|.+.. -+|.+|+++ ||..
T Consensus 101 ~D~iviR~-~~~-~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~v---GD~~ 166 (334)
T PRK12562 101 YDGIQYRG-HGQ-EVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYA---GDAR 166 (334)
T ss_pred CCEEEEEC-Cch-HHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEE---CCCC
Confidence 99999942 222 2222221 24577742 3455444443 233433 247788887 7753
No 129
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.06 E-value=2e+02 Score=23.83 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=28.5
Q ss_pred hhHHHHHHHH-HhCCCeEEEEccCCCCCCCcchHHHHHHhhhC
Q 016688 140 SQREQTVLNR-LKQGEIVALISDAGTPGISDPGTELAKLCVDE 181 (384)
Q Consensus 140 ~~~~~~Ii~~-l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~ 181 (384)
++..+.+.+. ...|.....++ .|+|..+.....++..+.+.
T Consensus 31 e~i~~~~~~~~~~~~~~~i~~~-~gep~~~~~~~~~~~~~~~~ 72 (166)
T PF04055_consen 31 EEILEEIKELKQDKGVKEIFFG-GGEPTLHPDFIELLELLRKI 72 (166)
T ss_dssp HHHHHHHHHHHHHTTHEEEEEE-SSTGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhcCCcEEEEe-ecCCCcchhHHHHHHHHHHh
Confidence 4444544444 35566666674 89999999888888887765
No 130
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.04 E-value=5.2e+02 Score=21.57 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=54.1
Q ss_pred EEEecCCCCccchhHHHHHHHhhC---CEEEEcCCCCc-HHHHhhcCC-CCcE--EecCCcchhhHHHHHHHHHhCC-C-
Q 016688 84 YLVATPIGNLEDITLRALRVLKSA---NVILSEDTRHS-GKLLQYYNI-KTPL--LSYHKFNESQREQTVLNRLKQG-E- 154 (384)
Q Consensus 84 yiVGtGpGnp~dITlrAl~~L~~A---DvI~~edtr~s-~~LL~~~~i-~~~l--is~~~~ne~~~~~~Ii~~l~~G-k- 154 (384)
.++|+++|+..++-..-...+-++ +++... ..++ .++++.... +... ++.......+...++++.+++. .
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG-~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~ 80 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTG-LRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAG 80 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCC
Confidence 378999999998888766665443 344442 2332 344433221 2222 3333333344556666666542 2
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCcc
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiS 192 (384)
++.++ ..|.+. ....+++.+.|++=.+-||.+
T Consensus 81 ~i~i~-~GG~~~-----~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 81 DILVV-GGGIIP-----PEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCEEE-EECCCC-----HHHHHHHHHCCCCEEECCCCC
Confidence 44444 355432 344566667777666666655
Done!