Query 016688
Match_columns 384
No_of_seqs 282 out of 2356
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwp_A Predicted methyltransfe 100.0 1.2E-59 4E-64 458.8 27.1 273 79-355 14-290 (296)
2 1wyz_A Putative S-adenosylmeth 100.0 2.8E-45 9.7E-50 346.9 22.1 222 79-303 1-235 (242)
3 4e16_A Precorrin-4 C(11)-methy 100.0 7.6E-43 2.6E-47 332.3 25.7 224 79-304 3-233 (253)
4 3ndc_A Precorrin-4 C(11)-methy 100.0 1.4E-40 4.9E-45 318.9 24.1 222 81-305 4-232 (264)
5 1cbf_A Cobalt-precorrin-4 tran 100.0 1.9E-39 6.5E-44 313.6 27.3 222 81-304 21-249 (285)
6 2ybo_A Methyltransferase; SUMT 100.0 7.1E-39 2.4E-43 311.5 25.0 220 80-303 24-257 (294)
7 1s4d_A Uroporphyrin-III C-meth 100.0 6.9E-39 2.4E-43 309.3 24.5 220 79-304 13-249 (280)
8 3nut_A Precorrin-3 methylase; 100.0 8.1E-39 2.8E-43 304.0 23.1 221 76-305 4-236 (251)
9 1ve2_A Uroporphyrin-III C-meth 100.0 6.9E-39 2.4E-43 300.8 21.3 210 79-304 1-222 (235)
10 1va0_A Uroporphyrin-III C-meth 100.0 1.1E-37 3.6E-42 293.5 20.6 210 81-304 1-222 (239)
11 1pjq_A CYSG, siroheme synthase 100.0 4.2E-36 1.4E-40 308.1 25.0 219 78-304 213-445 (457)
12 2e0n_A Precorrin-2 C20-methylt 100.0 3.4E-36 1.2E-40 286.6 21.0 211 79-304 3-236 (259)
13 2qbu_A Precorrin-2 methyltrans 100.0 1.6E-35 5.6E-40 276.4 22.8 206 79-303 1-229 (232)
14 2zvb_A Precorrin-3 C17-methylt 100.0 6.2E-36 2.1E-40 291.3 20.4 218 80-305 1-248 (295)
15 3i4t_A Diphthine synthase; nia 100.0 3.4E-36 1.2E-40 292.8 17.0 216 79-303 19-275 (292)
16 3nd1_A Precorrin-6A synthase/C 100.0 1.7E-36 5.8E-41 292.6 13.1 201 76-287 17-249 (275)
17 2z6r_A Diphthine synthase; met 100.0 6E-35 2.1E-39 278.8 20.6 215 82-304 2-243 (265)
18 1vhv_A Diphthine synthase; str 100.0 1.7E-34 5.9E-39 276.6 20.0 216 78-303 10-240 (268)
19 2npn_A Putative cobalamin synt 100.0 1.2E-33 4.1E-38 268.0 18.1 195 80-287 2-228 (251)
20 1wde_A Probable diphthine synt 100.0 4.7E-33 1.6E-37 270.3 19.6 212 81-303 8-253 (294)
21 2bb3_A Cobalamin biosynthesis 100.0 2.2E-31 7.6E-36 248.6 12.4 201 76-303 17-217 (221)
22 3hh1_A Tetrapyrrole methylase 100.0 4.7E-28 1.6E-32 205.0 12.6 113 79-191 4-117 (117)
23 3ffy_A Putative tetrapyrrole ( 99.9 3.2E-27 1.1E-31 200.0 15.1 114 189-303 1-114 (115)
24 3gx1_A LIN1832 protein; APC633 64.2 5 0.00017 33.6 3.4 51 142-197 50-100 (130)
25 3gdw_A Sigma-54 interaction do 58.0 8.4 0.00029 32.6 3.8 50 143-197 51-102 (139)
26 2fpr_A Histidine biosynthesis 51.7 46 0.0016 28.1 7.6 68 144-212 48-140 (176)
27 2i6x_A Hydrolase, haloacid deh 49.0 1.1E+02 0.0039 25.3 10.0 96 143-252 94-207 (211)
28 2pju_A Propionate catabolism o 45.3 65 0.0022 29.3 7.9 73 81-160 39-113 (225)
29 2q5c_A NTRC family transcripti 45.2 1.4E+02 0.0047 26.2 9.9 66 91-160 36-101 (196)
30 3mvn_A UDP-N-acetylmuramate:L- 43.9 53 0.0018 27.7 6.8 90 81-178 64-161 (163)
31 2o8r_A Polyphosphate kinase; s 43.7 44 0.0015 35.7 7.3 89 100-191 336-433 (705)
32 1ccw_A Protein (glutamate muta 40.6 79 0.0027 26.0 7.1 114 82-197 4-127 (137)
33 1h7n_A 5-aminolaevulinic acid 39.7 38 0.0013 33.0 5.5 97 81-189 84-206 (342)
34 3tr9_A Dihydropteroate synthas 38.9 1.5E+02 0.005 28.5 9.6 90 99-191 95-202 (314)
35 1tc3_C Protein (TC3 transposas 37.8 68 0.0023 20.1 5.2 29 319-355 14-42 (51)
36 2cob_A LCOR protein; MLR2, KIA 37.3 59 0.002 24.5 5.1 40 310-358 14-54 (70)
37 1byr_A Protein (endonuclease); 37.3 87 0.003 25.4 6.9 49 140-189 40-88 (155)
38 2dc1_A L-aspartate dehydrogena 37.1 1.1E+02 0.0038 27.0 8.1 54 141-195 62-115 (236)
39 3sho_A Transcriptional regulat 36.2 1.9E+02 0.0065 24.1 10.7 54 140-196 26-80 (187)
40 3to5_A CHEY homolog; alpha(5)b 36.1 1E+02 0.0036 25.1 7.2 81 107-196 13-101 (134)
41 2glo_A Brinker CG9653-PA; prot 36.0 37 0.0013 23.6 3.8 30 320-353 15-44 (59)
42 1gmx_A GLPE protein; transfera 33.4 1.6E+02 0.0054 22.4 7.7 86 94-191 5-92 (108)
43 3gl9_A Response regulator; bet 32.9 1.6E+02 0.0054 22.3 7.9 47 147-196 39-90 (122)
44 1tq1_A AT5G66040, senescence-a 31.9 45 0.0016 26.8 4.2 103 93-205 17-127 (129)
45 4fcy_A Transposase; rnaseh, DD 30.6 60 0.0021 32.5 5.7 34 317-354 39-72 (529)
46 3g5j_A Putative ATP/GTP bindin 30.1 1.9E+02 0.0066 22.4 8.2 38 149-191 84-123 (134)
47 4fyk_A Deoxyribonucleoside 5'- 29.0 89 0.003 26.8 5.6 73 91-164 53-129 (152)
48 1pv8_A Delta-aminolevulinic ac 27.5 58 0.002 31.5 4.6 97 81-189 74-195 (330)
49 1x92_A APC5045, phosphoheptose 27.3 2.8E+02 0.0096 23.4 9.3 55 141-198 33-93 (199)
50 2yci_X 5-methyltetrahydrofolat 27.1 2.3E+02 0.0078 26.3 8.6 83 82-167 49-141 (271)
51 1vee_A Proline-rich protein fa 27.1 2.3E+02 0.008 22.5 7.8 92 94-191 5-108 (134)
52 3g1w_A Sugar ABC transporter; 26.9 2.4E+02 0.0081 25.0 8.6 32 173-204 52-88 (305)
53 2cun_A Phosphoglycerate kinase 26.8 4.4E+02 0.015 26.2 11.0 150 140-304 36-201 (410)
54 2yva_A DNAA initiator-associat 26.8 2.6E+02 0.0089 23.4 8.5 55 141-198 29-89 (196)
55 2cos_A Serine/threonine protei 26.4 41 0.0014 24.1 2.5 42 316-358 10-51 (54)
56 2b0c_A Putative phosphatase; a 26.0 2.7E+02 0.0091 22.7 9.3 94 143-249 96-202 (206)
57 3ipr_A PTS system, IIA compone 25.7 67 0.0023 27.1 4.3 51 141-196 46-102 (150)
58 3eme_A Rhodanese-like domain p 24.6 1.2E+02 0.0039 23.1 5.2 95 96-205 4-100 (103)
59 1jko_C HIN recombinase, DNA-in 24.4 92 0.0031 19.8 4.0 31 318-356 13-43 (52)
60 3mtq_A Putative phosphoenolpyr 23.9 66 0.0022 27.7 3.9 51 140-197 64-116 (159)
61 1q1v_A DEK protein; winged-hel 23.6 1.3E+02 0.0046 22.3 5.1 45 309-354 11-60 (70)
62 1w5q_A Delta-aminolevulinic ac 23.3 65 0.0022 31.3 4.0 92 81-184 81-195 (337)
63 3hot_A Transposable element ma 22.7 1.3E+02 0.0045 27.8 6.1 37 313-353 9-48 (345)
64 4f2g_A Otcase 1, ornithine car 22.6 3.2E+02 0.011 25.9 8.9 62 97-165 93-163 (309)
65 1aj0_A DHPS, dihydropteroate s 22.5 3.4E+02 0.012 25.3 9.0 66 98-166 79-146 (282)
66 2wpv_B Ubiquitin-like protein 22.4 43 0.0015 24.2 1.9 22 362-383 10-38 (59)
67 1g2h_A Transcriptional regulat 22.3 57 0.0019 23.1 2.7 18 335-356 38-55 (61)
68 2wm8_A MDP-1, magnesium-depend 21.9 3.4E+02 0.012 22.4 11.2 96 144-252 74-177 (187)
69 4gmf_A Yersiniabactin biosynth 21.8 1.4E+02 0.0049 28.9 6.3 44 81-127 8-54 (372)
70 3l49_A ABC sugar (ribose) tran 21.6 3.8E+02 0.013 23.3 8.9 61 142-205 23-89 (291)
71 4gmk_A Ribose-5-phosphate isom 21.4 33 0.0011 31.6 1.5 108 85-203 24-156 (228)
72 1qxn_A SUD, sulfide dehydrogen 21.3 2.3E+02 0.008 22.8 6.8 100 93-205 22-127 (137)
73 1w1z_A Delta-aminolevulinic ac 21.1 54 0.0018 31.7 2.9 94 81-183 79-189 (328)
74 3lqk_A Dipicolinate synthase s 20.9 85 0.0029 28.0 4.1 41 152-193 6-46 (201)
75 3e7l_A Transcriptional regulat 20.8 64 0.0022 22.8 2.7 18 335-356 37-54 (63)
76 2p10_A MLL9387 protein; putati 20.7 97 0.0033 29.5 4.6 109 60-184 11-123 (286)
77 3obk_A Delta-aminolevulinic ac 20.6 65 0.0022 31.5 3.4 86 89-183 107-202 (356)
78 2x48_A CAG38821; archeal virus 20.6 1.9E+02 0.0065 19.1 5.1 31 318-356 23-53 (55)
79 1umq_A Photosynthetic apparatu 20.6 61 0.0021 24.8 2.7 18 335-356 59-76 (81)
80 4ep1_A Otcase, ornithine carba 20.4 3.7E+02 0.013 25.9 8.9 62 97-165 118-188 (340)
81 3foj_A Uncharacterized protein 20.4 82 0.0028 23.8 3.5 84 96-191 4-89 (100)
82 3lkv_A Uncharacterized conserv 20.3 2.3E+02 0.0077 25.8 7.2 24 140-163 127-150 (302)
83 1l6s_A Porphobilinogen synthas 20.3 60 0.0021 31.3 3.1 90 81-183 73-183 (323)
84 3eqz_A Response regulator; str 20.1 2E+02 0.0069 21.6 5.9 43 148-193 41-85 (135)
No 1
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=1.2e-59 Score=458.78 Aligned_cols=273 Identities=38% Similarity=0.619 Sum_probs=215.9
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
|+|+||+||+|||||+|||+||+++|++||+|+|||+|++.++|++++++++++++|+||+++..+.+++.+++|++||+
T Consensus 14 ~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va~ 93 (296)
T 3kwp_A 14 TGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIAQ 93 (296)
T ss_dssp CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEEE
Confidence 67999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEe
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVly 238 (384)
+||+|||+|||||.++++.+++.|++|+++||+||+++|++++|+|+++|.|+||+|.+..++...|+.+++.+.|+|||
T Consensus 94 lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~y 173 (296)
T 3kwp_A 94 VSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFY 173 (296)
T ss_dssp ECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEEE
T ss_pred eccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEee
Confidence 99999999999999999999999999999999999999999999999999999999988767778899999999999999
Q ss_pred cCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcccCCCC--Ch--HH
Q 016688 239 VPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAICVVETP--SE--DQ 314 (384)
Q Consensus 239 e~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~~~~~~--~~--~~ 314 (384)
++|||+.++++.|.+.++++++++|++++|+++|++++|+++++.++..++.++||+||||.|+........ .+ .+
T Consensus 174 ~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~~~E~i~~gtl~el~~~~~~~~~~ge~vlvv~~~~~~~~~~~~~~~~~~~ 253 (296)
T 3kwp_A 174 EAPHRLKKTLQNLAAGFGDERPAVLCRELTKRYEEFLRGSLAELANWAATDTVRGEFVVLVGGNPAPTTAATTAVDLSEP 253 (296)
T ss_dssp ECGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEHHHHHHHHHHSCCCSCEEEEECCCSSCC------------
T ss_pred eCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHhccHHHHHhhhcccccceeEEEEEcCCCCCCcccchhcccccc
Confidence 999999999999999888889999999999999999999999999998777789999999988654221110 11 23
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 315 LEKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 315 ~~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
+.+++..++++|+++|+|+|.+|+.+|+ +||.+|+++
T Consensus 254 ~~~~~~~~~~~~~~~k~a~~~~a~~~g~----~~~~~y~~~ 290 (296)
T 3kwp_A 254 IDVQVDRLIAAGEKPNDAIKEVAKLRGA----KKQEIYRQY 290 (296)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHhccc----hHHHHHHHh
Confidence 4456677777799999999999999999 999999964
No 2
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=2.8e-45 Score=346.89 Aligned_cols=222 Identities=23% Similarity=0.372 Sum_probs=189.2
Q ss_pred CCCeEEEEecCCCCcc---chhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCc-----EEecCCcchhhHHHHHHHHH
Q 016688 79 LEPGLYLVATPIGNLE---DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRL 150 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~---dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~-----lis~~~~ne~~~~~~Ii~~l 150 (384)
|+|+||+||+|||||+ +||+||+++|++||+|+|+|+++++++++.+++.++ +..++++++++..+.+++.+
T Consensus 1 M~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp -CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeeeeeecccccCHHHHHHHHHHHH
Confidence 4689999999999999 599999999999999999999888999998876554 67788888888889999999
Q ss_pred hCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhc
Q 016688 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN 230 (384)
Q Consensus 151 ~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~ 230 (384)
++|++||++||+|||++||||.++++++++.|++|++|||+||+++|++++|+|+++|.|+|++|.+..++.+.|+.+++
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f~~~g~~p~~~~~~~~~l~~l~~ 160 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ 160 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeEEEEEEcCCCccchHHHHHHHhc
Confidence 99999999998999999999999999999999999999999999999999999999999999998776545567777777
Q ss_pred C----CceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCC-CCcEEEEEECCC
Q 016688 231 E----VKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQP-KGEITVLVEGKA 303 (384)
Q Consensus 231 ~----~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~-kGe~vlII~G~~ 303 (384)
. +.|+|||++++++.++++.|.+.+++++++++++++|+++|++++++++++.+. ..+. +++. |+|.|+-
T Consensus 161 ~~~~~~~t~vl~~~~~~~~~~~~~l~~~~~~~~~v~vv~~~t~~~E~i~~~tl~~l~~~--~~~~~~~P~-i~vig~~ 235 (242)
T 1wyz_A 161 RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFIQTRTVKDWKGH--IPELSKIPC-IFLLYKL 235 (242)
T ss_dssp HHHHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSSSCEEEEEEHHHHSSC--CC---CCCE-EEEEEC-
T ss_pred ccccCCCeEEEEEcHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEEEEeeHHHHHhh--hhccCCCCE-EEEEecc
Confidence 7 899999999999999999998888889999999999999999999999999764 2234 6775 5555543
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=7.6e-43 Score=332.27 Aligned_cols=224 Identities=14% Similarity=0.185 Sum_probs=196.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
++|+||+||+|||||++||+||+++|++||+|+|+|++++..+++.++.+++++..+.+++++..+.+++.+++|++||+
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 82 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVR 82 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999999999999999999999988888889988877788877777888889999999999999999
Q ss_pred EccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcchhHHHHHhhhcCC
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEV 232 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~~~~~L~~l~~~~ 232 (384)
++ +|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|.++.++...+....++.+++.+
T Consensus 83 l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 161 (253)
T 4e16_A 83 LQ-TGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQ 161 (253)
T ss_dssp EE-SBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHHHHHTTC
T ss_pred Ee-CCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHHHHhcCC
Confidence 96 99999999999999999999999999999999999999999999 678887765543222234577788889
Q ss_pred ceEEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 233 KTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 233 ~TlVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
.|+|+|++++++.++++.|.+ +++++++++|++++|+++|++++++++++.+...+...+++.+|| +|+..
T Consensus 162 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~viv-Ig~~~ 233 (253)
T 4e16_A 162 TSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKIVKGTLSDIAVKVKENNINKTALIM-VGRFL 233 (253)
T ss_dssp SEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHTCCCSCEEEE-ESGGG
T ss_pred CeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCcEEEEEEHHHHHHHHHhCCCCCCEEEE-ECccc
Confidence 999999999999999999998 788889999999999999999999999999987666678985555 56554
No 4
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=1.4e-40 Score=318.89 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=193.8
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
++||+||+|||||++||+||+++|++||+|+|+|+++++.+++.+..+++++.++.+++++..+.+++.+++|++||+++
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 57999999999999999999999999999999999988889998888888888888888899999999999999999996
Q ss_pred cCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCc-chhHHHHHhhhcCCc
Q 016688 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHA-RSRTERLMLSANEVK 233 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~-~~~~~~L~~l~~~~~ 233 (384)
+|||+|||++.++++.+.+.|++|+++||+||+++|++++|+|+ ++|.|+++..+.. .+..+.++.+++.+.
T Consensus 84 -~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s~~~~~~~~~~~~~l~~l~~~~~ 162 (264)
T 3ndc_A 84 -SGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTRTSGRASAMPAGETLENFARTGA 162 (264)
T ss_dssp -SBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEECCTTTCCCCTTCCHHHHHTTTC
T ss_pred -CCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEeccCCCCCcchHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999 5677764322110 111235777888889
Q ss_pred eEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCcc
Q 016688 234 TQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAIC 305 (384)
Q Consensus 234 TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~~ 305 (384)
|+|+|++++++.++++.|.+.++++++++|++++|+++|++++++++|+.+.. +...+++ ++||+|+..+
T Consensus 163 tlvl~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~-~~~~~~~-~viivg~~~~ 232 (264)
T 3ndc_A 163 VLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRVVRATLATLQTSL-GAELERT-ALILVGRSLA 232 (264)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEEEEEEGGGSCGGG-SSSSCCC-EEEEESGGGS
T ss_pred cEEEecCHHHHHHHHHHHHhhCCCCCEEEEEEECCCCCeEEEEEEHHHHHHHH-hccCCcc-EEEEEcCcCC
Confidence 99999999999999999998888899999999999999999999999998876 4556777 6666677653
No 5
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=1.9e-39 Score=313.64 Aligned_cols=222 Identities=19% Similarity=0.255 Sum_probs=193.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
++||+||+|||||++||+||+++|++||+|+|+|++....+++.+..+++++..+.+++++..+.+++.+++|++||+++
T Consensus 21 ~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~Vv~L~ 100 (285)
T 1cbf_A 21 MKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVH 100 (285)
T ss_dssp SEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 58999999999999999999999999999999998888889988877778887777788888999999999999999996
Q ss_pred cCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcchhHHHHHhhhcCCce
Q 016688 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEVKT 234 (384)
Q Consensus 161 daGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~~~~~L~~l~~~~~T 234 (384)
.|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|.++..++.....+.++.+++...|
T Consensus 101 -~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~l~~~~~t 179 (285)
T 1cbf_A 101 -TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCT 179 (285)
T ss_dssp -SBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHHHHTTCSE
T ss_pred -CCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHHHhcCCCe
Confidence 79999999999999999999999999999999999999999998 67888765443221223456777788899
Q ss_pred EEEecCchhHHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 235 QIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 235 lVlye~p~ri~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
+|+|++++++.++++.|.+ ++++++++++++++|+++|++++++++++.+...+.+.+++.++ |.|+..
T Consensus 180 lvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~~~~~~~~~~~vi-iig~~~ 249 (285)
T 1cbf_A 180 IALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMI-LAGWAL 249 (285)
T ss_dssp EEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEE-EESGGG
T ss_pred EEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcCCcEEEEecHHHHHHHHHhcCCCCcEEE-EEchHh
Confidence 9999999999999999998 78888999999999999999999999999887655556787554 556543
No 6
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=7.1e-39 Score=311.50 Aligned_cols=220 Identities=19% Similarity=0.226 Sum_probs=186.6
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHhCC
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQG 153 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~~G 153 (384)
+|+||+||+|||||++||+||+++|++||+|+| |++++.++++.++.+.+.+. ++.+++++..+.+++.+++|
T Consensus 24 ~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~G 102 (294)
T 2ybo_A 24 AGSVALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQ 102 (294)
T ss_dssp TTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEE-CTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEE-cCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHCC
Confidence 479999999999999999999999999999999 78888899998876654432 34556777888899999999
Q ss_pred CeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEE-EeccCCcchhHHHHH
Q 016688 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFV-GFLPKHARSRTERLM 226 (384)
Q Consensus 154 k~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fi-Gflp~~~~~~~~~L~ 226 (384)
++|+++ ++|||++||++.++++.+.+.|++|++|||+||+++|++++|+|+ ++|.|+ |+.+.. .++...++
T Consensus 103 ~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~sg~~~~~-~~~~~~~~ 180 (294)
T 2ybo_A 103 RRVVRL-KGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQND-GRLDLDWA 180 (294)
T ss_dssp CCEEEE-EEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEEECSCCTT-SSCCCCHH
T ss_pred CeEEEE-cCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEEcccCCcc-cchhhHHH
Confidence 999999 799999999999999999999999999999999999999999999 689888 554422 11122467
Q ss_pred hhhcCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 227 LSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 227 ~l~~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
.+++...|+|+|++++++.++++.|.+. +++++++++++++|+++|++++++++++.+...+.+.+++.+|| .|+.
T Consensus 181 ~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~viv-Ig~~ 257 (294)
T 2ybo_A 181 GLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIV-VGQV 257 (294)
T ss_dssp HHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHHHHTTCCSSEEEE-ESTH
T ss_pred HHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHHHHHHhcCCCCCEEEE-ECch
Confidence 7788889999999999999999999885 77789999999999999999999999998876555677885555 4553
No 7
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=6.9e-39 Score=309.33 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=187.2
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~~ 152 (384)
.+|+||+||+|||||++||+||+++|++||+|+| |++++.++++.++.+++++. .|.+++++..+.+++.+++
T Consensus 13 ~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~-d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~ 91 (280)
T 1s4d_A 13 EKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELARA 91 (280)
T ss_dssp CSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEE-CSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999999 78888899998877777665 3455677888889999999
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC------cEEEEEeccCCcchh----H
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR----T 222 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~------~f~fiGflp~~~~~~----~ 222 (384)
|++|++++ .|||++||++.++++.+.+.|++|++|||+||+++|++++|+|+. +|.|+ +.+.++. .
T Consensus 92 G~~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~---~~~~~~~~~~~~ 167 (280)
T 1s4d_A 92 GNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFL---TGHDSSGLVPDR 167 (280)
T ss_dssp TCCEEEEE-SBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEE---ECCC-------C
T ss_pred CCeEEEEc-CCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEE---CCcCCccccccc
Confidence 99999996 699999999999999999999999999999999999999999994 45554 6555321 1
Q ss_pred HHHHhhhcCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEEC
Q 016688 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEG 301 (384)
Q Consensus 223 ~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G 301 (384)
..++.+++...|+|+|++++++.++++.|.+. +++++++++++++|+++|++++++++++.+...+.+++++.+ ||.|
T Consensus 168 ~~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~~~~~~~~~v-ivig 246 (280)
T 1s4d_A 168 INWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAI-VVVG 246 (280)
T ss_dssp CCHHHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEETTTHHHHHHHHTCCSSEE-EEES
T ss_pred ccHHHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCCCeEEEEecHHHHHHHHHhcCCCCCEE-EEEC
Confidence 24667777889999999999999999999884 777899999999999999999999999988765555788854 4456
Q ss_pred CCc
Q 016688 302 KAI 304 (384)
Q Consensus 302 ~~~ 304 (384)
+..
T Consensus 247 ~~~ 249 (280)
T 1s4d_A 247 EVV 249 (280)
T ss_dssp GGG
T ss_pred chh
Confidence 654
No 8
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=8.1e-39 Score=303.98 Aligned_cols=221 Identities=19% Similarity=0.182 Sum_probs=181.0
Q ss_pred CCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCe
Q 016688 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (384)
Q Consensus 76 ~~~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~ 155 (384)
.-.|.|-+|+||+|||||++||+||+++|++||+|+|+|++.. .+. ...+++++..+..++..+.+.+++.+++|++
T Consensus 4 ~~~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~~--~~~-~~~~~~~~~~~~~~ei~~~~~li~~~~~G~~ 80 (251)
T 3nut_A 4 HHHMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVA--RIA-PREGLTLHPTDNRVELDRATHALEMAAEGRR 80 (251)
T ss_dssp ----CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGGT--TCC-CCTTCEEEECCSSCCHHHHHHHHHHHHTTCE
T ss_pred cccccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcccc--ccc-ccCCCEEeecCCHHHHHHHHHHHHHHHCCCe
Confidence 3468899999999999999999999999999999999886431 221 1234566666655565556789999999999
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhh----CCCCEEEEcCccHHHHHHHHcCCCC-CcEEEEEeccCC--cchhHHHHHhh
Q 016688 156 VALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH--ARSRTERLMLS 228 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~----~gi~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGflp~~--~~~~~~~L~~l 228 (384)
||+++ +|||+|||++.++++.+.+ .|++|++|||+||+++|++++|+|+ ++|.++++.+.. +.+..+.++.+
T Consensus 81 Vv~L~-~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~~~~~~~~~~~~~l~~l 159 (251)
T 3nut_A 81 VVVVS-SGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHA 159 (251)
T ss_dssp EEEEE-SBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred EEEEe-CCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEecCCCCChHHHHHHHHHH
Confidence 99996 9999999999999999998 8999999999999999999999999 899999887653 33344567777
Q ss_pred hcCCceEEEecCc-----hhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 229 ANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 229 ~~~~~TlVlye~p-----~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
++.+.|+|+|+++ +++.++++.|.++++++++++|++++|+++|++++++++++.+. +. +..++||+|+.
T Consensus 160 ~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~g~~~~~~v~v~~~l~~~~E~i~~~tl~~l~~~----~~-~~~s~iiVg~~ 234 (251)
T 3nut_A 160 ARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPE----MA-DMRTVVLVGNA 234 (251)
T ss_dssp HHTTCEEEEESCSCSSSTTHHHHHHHHHHHHSCTTCEEEEEESTTSTTCEEEEEEGGGCCGG----GC-CTTEEEEECCS
T ss_pred hCCCCEEEEECCccccchhHHHHHHHHHHhCCCCCCEEEEEeeCCCCCcEEEEeEHHHHhhc----CC-CCCEEEEECCc
Confidence 7888899999974 57888888888888889999999999999999999999998753 22 44588888876
Q ss_pred cc
Q 016688 304 IC 305 (384)
Q Consensus 304 ~~ 305 (384)
.+
T Consensus 235 ~~ 236 (251)
T 3nut_A 235 AT 236 (251)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 9
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=6.9e-39 Score=300.84 Aligned_cols=210 Identities=25% Similarity=0.305 Sum_probs=172.7
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHhC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~~ 152 (384)
|+|+||+||+|||||++||+||+++|++||+|+| |+++++++++.+ +++++. ++++++++..+.+++.+++
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALARE 77 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEE-eCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999 678888898876 455553 3455677788889999999
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcchhHHHHH
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLM 226 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~~~~~L~ 226 (384)
|++|+++ ++|||++||++.++++.+.+.|++|++|||+||+++|++++|+|| ++|.|+ +.+. .. +
T Consensus 78 g~~V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~---s~~~-~~-~--- 148 (235)
T 1ve2_A 78 GRVVARL-KGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVA---TGHD-PA-L--- 148 (235)
T ss_dssp TCEEEEE-ESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEE---ESSC-TT-S---
T ss_pred CCeEEEE-cCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEe---CCCC-ch-h---
Confidence 9999999 799999999999999999999999999999999999999999999 678877 3333 11 1
Q ss_pred hhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 227 LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 227 ~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
.+. ...|+|+|++++++.++++.|.+++++++++++++++|+++|++++++++++.+. ..+.+++.+++| |+..
T Consensus 149 ~l~-~~~t~vl~~~~~~~~~i~~~L~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~~--~~~~~~~~vivi-g~~~ 222 (235)
T 1ve2_A 149 PLP-RADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWPGEAVRLGRVEDLPGL--GEGLPSPALLVV-GKVV 222 (235)
T ss_dssp CCC-BCSEEEEEC------CHHHHHHTTSCTTSEEEEEESTTSTTCEEEEEEGGGTTTT--TTTCCSSEEEEE-SGGG
T ss_pred hhc-cCCeEEEEcChhhHHHHHHHHHhcCCCCCeEEEEEECCcCCeEEEEEEHHHHHHH--hcCCCCCEEEEE-ChHh
Confidence 445 6789999999999999999998877778999999999999999999999999765 234678855555 6643
No 10
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=1.1e-37 Score=293.49 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=177.7
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecC-----CcchhhHHHHHHHHHhCCCe
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH-----KFNESQREQTVLNRLKQGEI 155 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~-----~~ne~~~~~~Ii~~l~~Gk~ 155 (384)
|+||+||+|||||++||+||+++|++||+|+| |+++++++++.+. ++.+.++ .+++++..+.+++.+++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~-~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLY-DRLVDERVLALAP--GEKVYVGKEEGESEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTCC--SEEEECCCCC----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHhhcc--ccEEecccccccccCHHHHHHHHHHHHHCCCc
Confidence 68999999999999999999999999999999 7788889998876 5555554 44567778888999999999
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcchhHHHHHhhh
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSA 229 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~~~~~L~~l~ 229 (384)
|+++ ++|||++||++.++++.+.+.|++|+++||+||+++| |+|| ++|.|+++.++.. +...++.++
T Consensus 78 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 150 (239)
T 1va0_A 78 VVRL-KGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAVSGVLEGG--GYPDLRPFA 150 (239)
T ss_dssp EEEE-ESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEEESSCGGG--CCCCCTTTT
T ss_pred EEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEEeccCCcc--chhhHHHhc
Confidence 9999 7999999999999999999999999999999999999 9999 6788886654321 112355666
Q ss_pred cCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCCc
Q 016688 230 NEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 230 ~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~~ 304 (384)
.. .|+|+|++++++.++++.|.+. +++++++++++++|+++|++++++++++.+ .+.+.+++++++| |+..
T Consensus 151 ~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~~l~el~~--~~~~~~~~~vivi-g~~~ 222 (239)
T 1va0_A 151 RV-PTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVAE--GKVEVRPPALWIL-GEVV 222 (239)
T ss_dssp TC-SSEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTSTTCEEEEEEHHHHHT--TCCCCCSSEEEEE-SGGG
T ss_pred CC-CcEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCCCcEEEEeEHHHHHh--hhcCCCCCEEEEE-chhh
Confidence 66 8999999999999999999884 777899999999999999999999999976 2335688866666 6654
No 11
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=4.2e-36 Score=308.07 Aligned_cols=219 Identities=19% Similarity=0.269 Sum_probs=185.0
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEe------cCCcchhhHHHHHHHHHh
Q 016688 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS------YHKFNESQREQTVLNRLK 151 (384)
Q Consensus 78 ~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis------~~~~ne~~~~~~Ii~~l~ 151 (384)
..+|+||+||+|||||++||+||+++|++||+|+| |++++.++++.++.+++.+. .|.+++++..+.+++.++
T Consensus 213 ~~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 291 (457)
T 1pjq_A 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQ 291 (457)
T ss_dssp CCCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEE-eCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999 68889999998877666554 345567788888999999
Q ss_pred CCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC------CcEEEEEeccCCcchh-HHH
Q 016688 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TER 224 (384)
Q Consensus 152 ~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~------~~f~fiGflp~~~~~~-~~~ 224 (384)
+|++|+++ ++|||++||+|.++++.+.+.|++++++||+||+++|++++|+|+ ++|.|+ +.|.... ...
T Consensus 292 ~G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~v---sg~~~~~~~~~ 367 (457)
T 1pjq_A 292 KGKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELD 367 (457)
T ss_dssp TTCEEEEE-ESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEE---CC------CCC
T ss_pred CCCcEEEE-eCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEE---eCCCCCcchhh
Confidence 99999999 799999999999999999999999999999999999999999999 467776 3333211 113
Q ss_pred HHhhhcCCceEEEecCchhHHHHHHHHHHh-hCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 225 LMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 225 L~~l~~~~~TlVlye~p~ri~~~l~~L~e~-lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
++.++....|+|+|++++++.++++.|.+. +++++++++++++|+++|++++|+++++.+... +.+++ ++||.|+.
T Consensus 368 ~~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~~~~--~~~~~-~viivg~~ 444 (457)
T 1pjq_A 368 WENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESP-ALIIVGRV 444 (457)
T ss_dssp HHHHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEEEEEEGGGHHHHTT--SCCSS-EEEEESGG
T ss_pred HHHHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCCCcEEEEEEHHHHHHHhc--CCCCC-EEEEEChh
Confidence 667778899999999999999999999885 778899999999999999999999999987643 35677 55555765
Q ss_pred c
Q 016688 304 I 304 (384)
Q Consensus 304 ~ 304 (384)
.
T Consensus 445 ~ 445 (457)
T 1pjq_A 445 V 445 (457)
T ss_dssp G
T ss_pred h
Confidence 4
No 12
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=3.4e-36 Score=286.61 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=169.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcH----HHHhh-c----CCCCcEE----ecCCcch------
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG----KLLQY-Y----NIKTPLL----SYHKFNE------ 139 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~----~LL~~-~----~i~~~li----s~~~~ne------ 139 (384)
|+|+||+||+|||||++||+||+++|++||+|+|++++.++ .+++. + ..+++++ +++++++
T Consensus 3 ~~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 2e0n_A 3 NQGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASY 82 (259)
T ss_dssp --CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------C
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHH
Confidence 46899999999999999999999999999999999765432 24432 2 2334554 4555543
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC----CcEEEEEecc
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT----DEFTFVGFLP 215 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~----~~f~fiGflp 215 (384)
++..+.|++.+++|++||+++ .|||++||++.++++.+.+.|++|++|||+||+++|++++|+|+ +.|+|+ |
T Consensus 83 ~~~~~~i~~~~~~g~~Va~l~-~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~---~ 158 (259)
T 2e0n_A 83 AANYASMAEEVQAGRRVAVVS-VGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVL---A 158 (259)
T ss_dssp GGGHHHHHHHHHTTCEEEEEE-SBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEE---C
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEE---c
Confidence 567788999999999999996 89999999999999999999999999999999999999999999 467654 6
Q ss_pred CCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcE
Q 016688 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (384)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~ 295 (384)
.+.. .+.++.+.+...|+|+|++++++.++++.|.+. | .++++++++|+++|++++ +++++.+. + .+++
T Consensus 159 ~~~~--~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~-g--~~v~v~~~l~~~~E~i~~-~l~el~~~----~-~~~~ 227 (259)
T 2e0n_A 159 QIDE--IGELERALVTHSTVVVMKLSTVRDELVSFLERY-A--KPFLYAEKVGMAGEFITM-EVDALRSR----A-IPYF 227 (259)
T ss_dssp SCSS--THHHHHHHTTCSEEEECCTTSSGGGHHHHHHHH-C--SCEEEEESTTSTTCEEEC-CTHHHHSC----C-CCSS
T ss_pred CCCC--HHHHHHHhhcCCEEEEEcccccHHHHHHHHHhC-C--CCEEEEEECCCCCeEEEc-cHHHHhhC----C-CCCc
Confidence 6542 245666666778999999999999999998875 4 239999999999999999 99998643 2 3567
Q ss_pred EEEEECCCc
Q 016688 296 TVLVEGKAI 304 (384)
Q Consensus 296 vlII~G~~~ 304 (384)
+++|.|+..
T Consensus 228 s~iii~~~~ 236 (259)
T 2e0n_A 228 SLLVCSPHC 236 (259)
T ss_dssp EEEEECGGG
T ss_pred EEEEEeccC
Confidence 888887654
No 13
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.6e-35 Score=276.37 Aligned_cols=206 Identities=19% Similarity=0.196 Sum_probs=166.1
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc-----HHHHhh-cCC---CCcEEe----cCCc------ch
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-----GKLLQY-YNI---KTPLLS----YHKF------NE 139 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s-----~~LL~~-~~i---~~~lis----~~~~------ne 139 (384)
|+|+||+||+|||||++||+||+++|++||+|+|++++.+ ..+++. +.. +++++. ++++ +.
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 4689999999999999999999999999999999887642 234432 222 344442 2332 23
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCC----cEEEEEecc
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~----~f~fiGflp 215 (384)
++..+.+++.+++|++||+++ .|||++||++.++++.+.++|++|+++||+||+++|++++|+|+. .|+++ |
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~-~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~---~ 156 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFIT-LGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVV---P 156 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEE---S
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEE---e
Confidence 566788888899999999996 799999999999999999999999999999999999999999973 56654 6
Q ss_pred CCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcE
Q 016688 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEI 295 (384)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~ 295 (384)
.+.. .++.+.+...|+|+|++++++.++++.|.+ .|.++++++++++|+++|+++++ ++ .. .+++
T Consensus 157 ~~~~----~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~-~g~~~~v~v~~~l~~~~E~i~~~-l~--------~~-~~~l 221 (232)
T 2qbu_A 157 RVDD----RFERVLRDVDACVIMKTSRHGRRAMEVVES-DPRGKDVVSVANCSMDDEVVERG-FA--------SG-GGYL 221 (232)
T ss_dssp SCCH----HHHHHGGGCSEEEESSHHHHHHHHHHHHHH-SSSCCEEEEEESTTSTTCEEEES-CC--------SC-CCSS
T ss_pred CCHH----HHHHHhhcCCeEEEEcccCcHHHHHHHHHh-cCCCCcEEEEEECCCCCcEEEcC-CC--------cC-CCcc
Confidence 6542 566666667899999999999999999988 46668999999999999999984 65 12 4667
Q ss_pred EEEEECCC
Q 016688 296 TVLVEGKA 303 (384)
Q Consensus 296 vlII~G~~ 303 (384)
+++|.++.
T Consensus 222 s~vii~~~ 229 (232)
T 2qbu_A 222 ATTLVRFR 229 (232)
T ss_dssp EEEEEEC-
T ss_pred EEEEEecC
Confidence 78777764
No 14
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=6.2e-36 Score=291.31 Aligned_cols=218 Identities=23% Similarity=0.254 Sum_probs=181.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcC--CCCcEEecCCcchhhHHHHHHHHHhCCCeEE
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN--IKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~--i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (384)
||+||+||+|||||++||+||+++|++||+|+|++++ .++++.+. .+++++.++.+++.+..+.+++.+++|++||
T Consensus 1 MG~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~--l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~~Va 78 (295)
T 2zvb_A 1 MGELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTY--VKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVA 78 (295)
T ss_dssp -CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHH--HHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcH--HHHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCCcEE
Confidence 3799999999999999999999999999999998754 36676652 3566777777777777888889899999999
Q ss_pred EEccCCCCCCCcchHHHHHHhhhCC--------------------CCEEEEcCccHHHHHHHHcCCCC-CcEEEEEeccC
Q 016688 158 LISDAGTPGISDPGTELAKLCVDEK--------------------IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPK 216 (384)
Q Consensus 158 llSdaGDP~I~dpg~~Lv~~l~~~g--------------------i~V~vIPGiSS~~aA~a~sGlp~-~~f~fiGflp~ 216 (384)
+++ .|||++|+.+.++.+.+.+.+ ++|++|||+||+++|++++|+|| ++|.++++...
T Consensus 79 ~L~-~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~~~is~~~~ 157 (295)
T 2zvb_A 79 LVS-GGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDL 157 (295)
T ss_dssp EEE-SBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCEEEEECCCT
T ss_pred EEe-CCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCCeEEeCCCC
Confidence 995 899999999999988887654 99999999999999999999998 78998865321
Q ss_pred --CcchhHHHHHhhhcCCceEEEecC-----chhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcC
Q 016688 217 --HARSRTERLMLSANEVKTQIFYVP-----PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSH 289 (384)
Q Consensus 217 --~~~~~~~~L~~l~~~~~TlVlye~-----p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~ 289 (384)
.+....+.++.+++.+.|+|+|+. ++++.++++.|.+.+++++++++++++|+++|++++++++++.+.
T Consensus 158 ~~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~~~~~~~v~vv~~l~~~~E~i~~~tL~el~~~---- 233 (295)
T 2zvb_A 158 LTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEVALTTLEGLREA---- 233 (295)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTTSCTTCEEEEEESTTSTTCEEEEEETGGGGGC----
T ss_pred CCCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhcCCCCCEEEEEecCCCCCcEEEEeeHHHHHhc----
Confidence 233334556666677889999995 458999999998877779999999999999999999999998653
Q ss_pred CCCCcEEEEEECCCcc
Q 016688 290 QPKGEITVLVEGKAIC 305 (384)
Q Consensus 290 ~~kGe~vlII~G~~~~ 305 (384)
. .+++++||.|+..+
T Consensus 234 ~-~~~~svviig~~~~ 248 (295)
T 2zvb_A 234 E-AGMLTTVVIGNRQS 248 (295)
T ss_dssp C-CCTTEEEEECCTTC
T ss_pred c-CCCCEEEEECCccc
Confidence 2 57789999887653
No 15
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=3.4e-36 Score=292.82 Aligned_cols=216 Identities=18% Similarity=0.207 Sum_probs=172.3
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC----CcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCC
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr----~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk 154 (384)
..|+||+||+|||||++||+||+++|++||+|+|++++ .+.++|+.+ .+++++.++++++++..+.+++.+++ +
T Consensus 19 ~~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~~~~~~~~~i~~~a~~-~ 96 (292)
T 3i4t_A 19 PGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRDLVETEADQILEPAKT-K 96 (292)
T ss_dssp -CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------CCCTTHHHHTT-S
T ss_pred CCCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccccHHHHHHHHHHHhcC-C
Confidence 45899999999999999999999999999999998765 567888877 56777888877777777788888887 9
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcE------EEE--EeccCCcchhHHHHH
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF------TFV--GFLPKHARSRTERLM 226 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f------~fi--Gflp~~~~~~~~~L~ 226 (384)
+||+++ +|||++||++.++++++.+.|++|++|||+||++ |++++|+|++.| .|+ ++.|.+. ....++
T Consensus 97 ~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~-A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~--~~~~~~ 172 (292)
T 3i4t_A 97 NVALLV-VGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMN-AIGCSGLQLYRFGQTVSVCFWSEHWRPSSY--YPKIKI 172 (292)
T ss_dssp EEEEEE-SBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHH-HGGGGSCCGGGBCCCEEECCCBTTBCCCTH--HHHHHH
T ss_pred CEEEEe-cCCCCccccHHHHHHHHHHCCCcEEEECCHHHHH-HHHHhCCCcccCCceeEEEEEeCCCCCCcc--HHHHHH
Confidence 999996 9999999999999999999999999999999998 569999999854 332 2333221 334577
Q ss_pred hhhcCCceEEE------------------------ecCchhHHHHHHHHHH-----hhCCCceEEEEeecCCCceEEEEe
Q 016688 227 LSANEVKTQIF------------------------YVPPHKLLQFLEETSL-----LFGYSRRCVIAREITKMHEEFWRG 277 (384)
Q Consensus 227 ~l~~~~~TlVl------------------------ye~p~ri~~~l~~L~e-----~lg~d~~v~VareLtk~~E~i~~g 277 (384)
.++....|+|+ |++++++.+.+.++.+ +++++++++|++++|+++|++++|
T Consensus 173 ~l~~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i~~~ 252 (292)
T 3i4t_A 173 NRDNNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKIVYG 252 (292)
T ss_dssp HHHTTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEEEEE
T ss_pred HhhcCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEEEEE
Confidence 88888999999 8999996655554433 678899999999999999999999
Q ss_pred chhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 278 TLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 278 tl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
|++++.+. +.+ ....++||.|+.
T Consensus 253 tL~~l~~~--~~~-~~~~~liivG~~ 275 (292)
T 3i4t_A 253 KMKDLLHY--DFG-APMHCLLIPAPQ 275 (292)
T ss_dssp EHHHHTTC--CCC-SSCEEEEECCSS
T ss_pred EHHHHHhh--hcC-CCCCEEEEECCc
Confidence 99999873 222 245799999974
No 16
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.7e-36 Score=292.62 Aligned_cols=201 Identities=16% Similarity=0.132 Sum_probs=159.3
Q ss_pred CCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcCCC--CcEEecCC---------
Q 016688 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIK--TPLLSYHK--------- 136 (384)
Q Consensus 76 ~~~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s--------~~LL~~~~i~--~~lis~~~--------- 136 (384)
...|+|+||+||+|||||++||+||+++|++||+|+|++++++ .++++.+... ++++.++.
T Consensus 17 ~~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~ 96 (275)
T 3nd1_A 17 RGSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPS 96 (275)
T ss_dssp ---CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC------
T ss_pred CCCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccch
Confidence 3457899999999999999999999999999999999998765 6788877433 56665543
Q ss_pred ----------cchhhHHHHHHHHHhC-CCeEEEEccCCCCCCCcchHHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCC
Q 016688 137 ----------FNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLA 204 (384)
Q Consensus 137 ----------~ne~~~~~~Ii~~l~~-Gk~VallSdaGDP~I~dpg~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp 204 (384)
.+++...+.|++.+++ |++||+++ +|||+|||++.++++.+.+ .|++|++|||+||+++|++++|+|
T Consensus 97 Y~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~-~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~p 175 (275)
T 3nd1_A 97 YRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIP 175 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEE-SBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCC
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEe-CCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCC
Confidence 1122334568888999 99999996 8999999999999999998 799999999999999999999999
Q ss_pred CCcE-EEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHH
Q 016688 205 TDEF-TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAK 283 (384)
Q Consensus 205 ~~~f-~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~ 283 (384)
++++ .+++|+|.+.. ..++.+...+.++|+|++++++.++ .++++++++++++|+++|++++|+++++.
T Consensus 176 l~~~~~~~~~l~g~~~---~~~~~~~~~~~~vvl~~~~~~l~~i-------~~~~~~v~v~~~l~~~~E~i~~gtL~el~ 245 (275)
T 3nd1_A 176 LNDIGAPVVITTGRQL---RDHGWPAGTETVVAMLDGECSFQSL-------PPDGLTIFWGACVAMPEEVLIRGPVAEVT 245 (275)
T ss_dssp SSCTTCCEEEEEHHHH---HHHCSCTTCSEEEEESCSSCGGGGS-------CCTTEEEEEEESTTSTTCEEEEEEHHHHH
T ss_pred CccCCcEEEEEcCCCc---chHHHHhCCCCEEEEECCcccHHHH-------hCCCCEEEehhccCCCCcEEEEEEHHHHH
Confidence 9865 24557775432 1122233445567788888876442 23579999999999999999999999998
Q ss_pred HHHH
Q 016688 284 EAFS 287 (384)
Q Consensus 284 ~~~~ 287 (384)
+.+.
T Consensus 246 ~~~~ 249 (275)
T 3nd1_A 246 DEIL 249 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 17
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=6e-35 Score=278.83 Aligned_cols=215 Identities=17% Similarity=0.210 Sum_probs=169.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCC-----CcHHHHhhcCCCCcEEecCCcchhhHHHHHH-HHHhCCCe
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR-----HSGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr-----~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii-~~l~~Gk~ 155 (384)
+||+||+|||||++||+||+++|++||+|+|++++ ++.++|+.+ ++++++..+.++.++..+.++ +.++ |++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 79 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRL-IGKEIRVLSREDVELNFENIVLPLAK-END 79 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHH-HTSCCEEECHHHHHHHHHHHTHHHHT-TSC
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhc-cCCcEEEcCcccHHHHHHHHHHHHhC-CCc
Confidence 69999999999999999999999999999998654 256788876 356666666556666777887 7777 899
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcE----EEEEeccCCcc--hhHHHHHhhh
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF----TFVGFLPKHAR--SRTERLMLSA 229 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f----~fiGflp~~~~--~~~~~L~~l~ 229 (384)
||+++ +|||++||++.++++.+.+.|+++++|||+||+++| |++|+||+++ .++ +.+.|+. ...+.+....
T Consensus 80 V~~l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~-~~s~~~~~~~~~~~l~~~~ 156 (265)
T 2z6r_A 80 VAFLT-PGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVA-YPEGNWFPTSYYDVIKENA 156 (265)
T ss_dssp EEEEE-SBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEEC-CCBTTBCCCHHHHHHHHHH
T ss_pred EEEEE-CCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEE-EecCCcCCCchHHHHHHHH
Confidence 99995 999999999999999999999999999999999999 9999999754 332 2223321 1234566666
Q ss_pred cCC-ceEEE---------ecCchh----HHHHHHHHHH-hhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCc
Q 016688 230 NEV-KTQIF---------YVPPHK----LLQFLEETSL-LFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGE 294 (384)
Q Consensus 230 ~~~-~TlVl---------ye~p~r----i~~~l~~L~e-~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe 294 (384)
+.+ .|+|+ |+++++ +.++++.+.. ++++++++++++++|+++|++++++++++.+. +. ..++
T Consensus 157 ~~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i~~~~l~~l~~~--~~-~~~~ 233 (265)
T 2z6r_A 157 ERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIRE--DF-GDPP 233 (265)
T ss_dssp HTTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEEEEEEHHHHTTC--CC-CSSC
T ss_pred hCCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEEEEeeHHHHhhh--hc-CCCC
Confidence 555 89999 899884 4444444332 45668999999999999999999999998653 11 2578
Q ss_pred EEEEEECCCc
Q 016688 295 ITVLVEGKAI 304 (384)
Q Consensus 295 ~vlII~G~~~ 304 (384)
+++||.|+..
T Consensus 234 ~~lii~g~~~ 243 (265)
T 2z6r_A 234 HILIVPGKLH 243 (265)
T ss_dssp EEEEECCSCC
T ss_pred cEEEEECCCc
Confidence 9999999643
No 18
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=1.7e-34 Score=276.62 Aligned_cols=216 Identities=15% Similarity=0.101 Sum_probs=164.2
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC-----cHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhC
Q 016688 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 78 ~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~-----s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~ 152 (384)
...|+||+||+|||||++||+||+++|++||+|+|++ ++ ..+.++.+. .++....+....++..+.+++.+++
T Consensus 10 ~~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~a~~ 87 (268)
T 1vhv_A 10 GHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEY-YTSKLLSSIEEMEEFF-GKRVVELERSDLEENSFRLIERAKS 87 (268)
T ss_dssp ---CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEEC-SSCCCSSCHHHHHHHH-TSCCEEECHHHHTTTHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECC-chHhhhccHHHHHHHh-CCCccccchhHHHHHHHHHHHHhCC
Confidence 3458999999999999999999999999999999975 44 123333321 2222221111234567788888875
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEE----eccCCcchhHHHHHhh
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVG----FLPKHARSRTERLMLS 228 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiG----flp~~~~~~~~~L~~l 228 (384)
++||+++ +|||++||++.++++++++.|++|++|||+||+++|++++|+||+++.+.. |+|... .....+.+
T Consensus 88 -~~Va~L~-~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~~--~~~~~~~l 163 (268)
T 1vhv_A 88 -KSVVLLV-PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTP--VNVIKANR 163 (268)
T ss_dssp -SEEEEEE-SBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSHH--HHHHHHHH
T ss_pred -CCEEEEe-CCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCch--HHHHHHHh
Confidence 8999996 999999999999999999999999999999999999999999998754432 134321 22233456
Q ss_pred hcCCceEEE------ecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECC
Q 016688 229 ANEVKTQIF------YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGK 302 (384)
Q Consensus 229 ~~~~~TlVl------ye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~ 302 (384)
.....|+|+ |++++++.+.+..+.+.++ ++++++++++|+++|++++++++++.+.. ......++||.|+
T Consensus 164 ~~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~-~~~v~v~~~l~~~~E~i~~~tl~el~~~~---~~~~~~~liI~~~ 239 (268)
T 1vhv_A 164 SIDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK-DLYAVGIARAGSGEEVVKCDRLENLKKID---FGKPLHVMVVLAK 239 (268)
T ss_dssp HTTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG-GSEEEEEESTTSSSCEEEEEEGGGGGGSC---CCSSCEEEEECCS
T ss_pred ccCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC-CcEEEEEEcCCCCceEEEEEEHHHHHHhh---cCCCCeEEEEECC
Confidence 667889999 8999999888888777777 89999999999999999999999996542 1134446777665
Q ss_pred C
Q 016688 303 A 303 (384)
Q Consensus 303 ~ 303 (384)
.
T Consensus 240 ~ 240 (268)
T 1vhv_A 240 T 240 (268)
T ss_dssp S
T ss_pred c
Confidence 3
No 19
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.2e-33 Score=268.05 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=149.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCc--------HHHHhhcCCCCcEEecCCc--------------
Q 016688 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIKTPLLSYHKF-------------- 137 (384)
Q Consensus 80 ~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s--------~~LL~~~~i~~~lis~~~~-------------- 137 (384)
+|+||+||+|||||++||+||+++|++||+|+|++++.+ ..+++.+..+++++.++..
T Consensus 2 mg~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (251)
T 2npn_A 2 MRTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVR 81 (251)
T ss_dssp CEEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHH
T ss_pred CcEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhh
Confidence 478999999999999999999999999999999987664 3466766436677766531
Q ss_pred ----chhhHH-HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCC---CCEEEEcCccHHHHHHHHcCCCCCcEE
Q 016688 138 ----NESQRE-QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATDEFT 209 (384)
Q Consensus 138 ----ne~~~~-~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~g---i~V~vIPGiSS~~aA~a~sGlp~~~f~ 209 (384)
+.++.. +.|.+.+++|++||+++ +|||++||++.++++.+.+.| ++|+||||+||+++|++++|+|++++.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g~~Vv~l~-~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~ 160 (251)
T 2npn_A 82 RWHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIG 160 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEE-SBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTT
T ss_pred hhhhhHHHHHHHHHHHHHHCCCeEEEEe-CCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCC
Confidence 112223 35557777899999996 999999999999999999887 999999999999999999999998631
Q ss_pred -EEEeccCCcchhHHHHH-hhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHH
Q 016688 210 -FVGFLPKHARSRTERLM-LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFS 287 (384)
Q Consensus 210 -fiGflp~~~~~~~~~L~-~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~ 287 (384)
.+.++|.+. ++ .+.....|+|+|..+++..+. +. ++++++++++++|+++|++++|+++++.+...
T Consensus 161 ~~~~~~~g~~------l~~~l~~~~~t~vvl~~~~~~~~~---l~---~~~~~v~v~~~l~~~~E~i~~~~l~el~~~~~ 228 (251)
T 2npn_A 161 EAIHITTGRN------LPETSAKDRRNCVVMLDGKTAWQD---VA---TEHTYMWWGAFLGTEQQVLRKGYVHEIGAQVA 228 (251)
T ss_dssp CCCEEEETTT------GGGSCTTGGGEEEEESCSSCTHHH---HC---CTTEEEEEEESTTSTTCEEEEEEHHHHHHHHH
T ss_pred CeEEEEccch------hhHHHHhcCCcEEEEEcchhhHHH---hc---CCCCEEEEEEECCCCCeEEEEcCHHHHHHHHH
Confidence 112335432 22 233456788888777663322 22 45799999999999999999999999987653
No 20
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=100.00 E-value=4.7e-33 Score=270.26 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=165.3
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCC---cH---HHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCC
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH---SG---KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~---s~---~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk 154 (384)
++||+||+| |||++||+||+++|++||+|+|++.++ +. .+++.+.. ++++..+.++.++..+.+++.++ |+
T Consensus 8 ~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~i~~~~~-g~ 84 (294)
T 1wde_A 8 VTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASRRDLEERSREIVSRAL-DA 84 (294)
T ss_dssp CEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCHHHHHTSHHHHTCCSS-CC
T ss_pred eEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecChHHHHHHHHHHHHHhC-CC
Confidence 489999999 999999999999999999999987553 22 25555554 56777665555666777877777 99
Q ss_pred eEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcE--EEE-E-----eccCCcchhHHHHH
Q 016688 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF--TFV-G-----FLPKHARSRTERLM 226 (384)
Q Consensus 155 ~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f--~fi-G-----flp~~~~~~~~~L~ 226 (384)
+||+++ +|||++||++.++++.+.++|+++++|||+||+++|++++|+|++++ .+. - ++|.+ ..+.+.
T Consensus 85 ~Vv~L~-~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~---~~~~l~ 160 (294)
T 1wde_A 85 VVAVVT-AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPIS---VARRIY 160 (294)
T ss_dssp EEEEEE-SBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHH---HHHHHH
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCC---hHHHHH
Confidence 999996 99999999999999999999999999999999999999999999874 221 1 23322 223444
Q ss_pred h-hhcCCceEEEecCchh-----HHHHHHHHH---Hh----------hCCCceEEEEeecCCCceEEEEechhhHHHHHH
Q 016688 227 L-SANEVKTQIFYVPPHK-----LLQFLEETS---LL----------FGYSRRCVIAREITKMHEEFWRGTLGEAKEAFS 287 (384)
Q Consensus 227 ~-l~~~~~TlVlye~p~r-----i~~~l~~L~---e~----------lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~ 287 (384)
. +.....|+|+|+.+++ +.++.+.|. +. +++++++++++++|+++|++++++++++.+.
T Consensus 161 ~~l~~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i~~~tl~el~~~-- 238 (294)
T 1wde_A 161 LNLCAGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTA-- 238 (294)
T ss_dssp HHHHHTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEEEESCHHHHHTC--
T ss_pred HHHhcCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEEEEeeHHHHhhc--
Confidence 4 4555689999998887 666666665 53 3568999999999999999999999998752
Q ss_pred cCCC-CCcEEEEEECCC
Q 016688 288 SHQP-KGEITVLVEGKA 303 (384)
Q Consensus 288 ~~~~-kGe~vlII~G~~ 303 (384)
+. ....++||.|+.
T Consensus 239 --~~~~~~~~iiI~g~~ 253 (294)
T 1wde_A 239 --DVEGGVYSIVIPARL 253 (294)
T ss_dssp --CCCCCCCEEEECSSC
T ss_pred --ccCCCCEEEEEeCCC
Confidence 33 445555555743
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=2.2e-31 Score=248.60 Aligned_cols=201 Identities=18% Similarity=0.180 Sum_probs=147.0
Q ss_pred CCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCe
Q 016688 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (384)
Q Consensus 76 ~~~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~ 155 (384)
.++..|+||+||+||| |++||+||+++|++||+|+| ++|. .++++.+- ..+...++.. .++.++.+. .+++|++
T Consensus 17 ~~~~~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~-~~~~-l~~~~~~~-~~~~~~~~~~-~~~~~~~i~-~~~~g~~ 90 (221)
T 2bb3_A 17 LYFSGHMIWIVGSGTC-RGQTTERAKEIIERAEVIYG-SRRA-LELAGVVD-DSRARILRSF-KGDEIRRIM-EEGRERE 90 (221)
T ss_dssp ---CCSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEE-CHHH-HHHTTCTT-CTTEEECSCC-SHHHHHHHH-HHHHHSC
T ss_pred cCCCCCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEE-CHHH-HHHhhhhc-CCceEeccch-HHHHHHHHH-HhcCCCc
Confidence 3445689999999999 99999999999999999999 5554 34444331 1222223322 234556665 5667999
Q ss_pred EEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceE
Q 016688 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQ 235 (384)
Q Consensus 156 VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~Tl 235 (384)
||+++ .|||++||++..+.+. ..+++|++|||+||+++|++++|+||++|.|+++.++... ..++.+.+...++
T Consensus 91 Vv~L~-~GDP~i~~~~~~l~~~--~~~i~veviPGiSS~~aa~a~~g~pl~~~~~vs~~~r~~~---~~l~~l~~~~~~v 164 (221)
T 2bb3_A 91 VAVIS-TGDPMVAGLGRVLREI--AEDVEIKIEPAISSVQVALARLKVDLSEVAVVDCHAKDFD---AELTELLKYRHLL 164 (221)
T ss_dssp EEEEE-SBCTTTTTSHHHHHTS--CCSSEEEEECCCCHHHHHHHHHTCCGGGEEEEEC----CC---HHHHTHHHHCEEE
T ss_pred EEEEe-CCCCccccCHHHHHHh--cCCCCEEEECCHHHHHHHHHHhCCCceeEEEEeecCCCch---HHHHHHhcCCeEE
Confidence 99996 6999999998886553 3589999999999999999999999999999866543322 3455566555566
Q ss_pred EEecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 236 IFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 236 Vlye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
+++..+++..+ +.+ +++++++++|+++|++++++++++ + +..++++++|.++.
T Consensus 165 vl~~~~~~~~~----l~~-----~~v~v~~~lg~~~E~i~~~~l~el-~-----~~~~~~slii~~~~ 217 (221)
T 2bb3_A 165 ILADSHFPLER----LGK-----RRVVLLENLCMEGERIREGNADSI-E-----LESDYTIIFVEREV 217 (221)
T ss_dssp EEECTTCCCGG----GTT-----CEEEEEESTTSTTCEEEEEETTTC-C-----CCCSSEEEEECCCC
T ss_pred EEECCCCCHHH----HhC-----CeeehhhhcCCCCcEEEEccHHHH-h-----hcCCCEEEEEEcCC
Confidence 66666665432 222 899999999999999999999998 2 13688999998653
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.95 E-value=4.7e-28 Score=205.03 Aligned_cols=113 Identities=48% Similarity=0.804 Sum_probs=104.6
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCC-CcEEecCCcchhhHHHHHHHHHhCCCeEE
Q 016688 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (384)
Q Consensus 79 ~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~-~~lis~~~~ne~~~~~~Ii~~l~~Gk~Va 157 (384)
++|+||+||+|||||++||+||+++|++||+|++++++++.++|+.+++. +++++++++++.+..+.+++.+++|++|+
T Consensus 4 ~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V~ 83 (117)
T 3hh1_A 4 HKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSDVA 83 (117)
T ss_dssp CCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCeEE
Confidence 56899999999999999999999999999999999988888899988765 78889999998889999999999999999
Q ss_pred EEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCc
Q 016688 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 158 llSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGi 191 (384)
++||+|||++||++.++++++++.|++|+++||+
T Consensus 84 ~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 84 LVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 9988999999999999999999999999999997
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.95 E-value=3.2e-27 Score=200.01 Aligned_cols=114 Identities=43% Similarity=0.736 Sum_probs=106.9
Q ss_pred cCccHHHHHHHHcCCCCCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHHHhhCCCceEEEEeecC
Q 016688 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREIT 268 (384)
Q Consensus 189 PGiSS~~aA~a~sGlp~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~e~lg~d~~v~VareLt 268 (384)
||+||+++|++.+|+|.++|.|.||+|.+. .|++.|+.+++.+.|+||||+|||+.+++++|.+.++++++++|++|+|
T Consensus 1 PG~sA~~~Al~~sGlp~~~F~F~Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relT 79 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREIS 79 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSEEEEESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESS
T ss_pred CchhHHHHHHHHcCCCCCcEEEEeeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccC
Confidence 899999999999999999999999999887 5778899999999999999999999999999999999899999999999
Q ss_pred CCceEEEEechhhHHHHHHcCCCCCcEEEEEECCC
Q 016688 269 KMHEEFWRGTLGEAKEAFSSHQPKGEITVLVEGKA 303 (384)
Q Consensus 269 k~~E~i~~gtl~eL~~~~~~~~~kGe~vlII~G~~ 303 (384)
|++|++++|+++|+.+++.++.+|||+||||.|+.
T Consensus 80 k~~E~~~rgtl~el~~~~~~~~~kGe~vivv~~~~ 114 (115)
T 3ffy_A 80 KIHEETVRGTLSELIEHFTATDPRGEIVIVLAGID 114 (115)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSCCCSSEEEEECCC-
T ss_pred CCceEEEEeeHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 99999999999999999887889999999998753
No 24
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=64.16 E-value=5 Score=33.58 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHH
Q 016688 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (384)
Q Consensus 142 ~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA 197 (384)
...+.++.+.+|+-|.+++|-|.|.=. ...+.+ +.+.++++|.|++-..+.
T Consensus 50 ~i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~---~~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 50 KLKQTVVKLNPVKGVLILSDMGSLTSF--GNILTE---ELGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp HHHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHH---HHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHH---hcCCCEEEEeCCCHHHHH
Confidence 334444555568888888899988543 233332 226789999999865543
No 25
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=57.99 E-value=8.4 Score=32.63 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHHHHHH--HhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHH
Q 016688 143 EQTVLNR--LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (384)
Q Consensus 143 ~~~Ii~~--l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA 197 (384)
..+.++. +.+|+-|.+++|-|+|.-. +..+.. +.+.++++|.|++-..+.
T Consensus 51 i~~~i~~~~~d~g~GVLiL~DmGSp~n~--a~~l~~---~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 51 LRNQVITQKESLNNGILLLTDMGSLNSF--GNMLFE---ETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp HHHHHHTSTGGGTTCEEEEECSGGGGGH--HHHHHH---HHCCCEEEECSCCHHHHH
T ss_pred HHHHHHhhcCCCCCCEEEEEeCCCHHHH--HHHHHH---hhCCCEEEEeCCCHHHHH
Confidence 3334444 3357788888899988543 233322 226789999999866543
No 26
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=51.74 E-value=46 Score=28.08 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=35.4
Q ss_pred HHHHHHH-hCCCeEEEEccCCCCCCCc---------chHHHHHHhhhCCCCEEEE---------------cCccHHHHHH
Q 016688 144 QTVLNRL-KQGEIVALISDAGTPGISD---------PGTELAKLCVDEKIPVVPI---------------PGASAFVAAL 198 (384)
Q Consensus 144 ~~Ii~~l-~~Gk~VallSdaGDP~I~d---------pg~~Lv~~l~~~gi~V~vI---------------PGiSS~~aA~ 198 (384)
.++++.+ ++|..++++| .+.....+ +...+...+.+.|+.+..+ |-+..+..++
T Consensus 48 ~e~L~~L~~~G~~l~i~T-n~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~ 126 (176)
T 2fpr_A 48 IPQLLKLQKAGYKLVMIT-NQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYL 126 (176)
T ss_dssp HHHHHHHHHTTEEEEEEE-ECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC
T ss_pred HHHHHHHHHCCCEEEEEE-CCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHH
Confidence 3344555 4688999997 34322211 2233444455566664332 3355566667
Q ss_pred HHcCCCCCcEEEEE
Q 016688 199 SASGLATDEFTFVG 212 (384)
Q Consensus 199 a~sGlp~~~f~fiG 212 (384)
...|++.++..++|
T Consensus 127 ~~~gi~~~~~l~VG 140 (176)
T 2fpr_A 127 AEQAMDRANSYVIG 140 (176)
T ss_dssp ----CCGGGCEEEE
T ss_pred HHcCCCHHHEEEEc
Confidence 77777777777765
No 27
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=48.95 E-value=1.1e+02 Score=25.26 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhh------CCC----CEEEE--------cCccHHHHHHHHcCCC
Q 016688 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD------EKI----PVVPI--------PGASAFVAALSASGLA 204 (384)
Q Consensus 143 ~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~------~gi----~V~vI--------PGiSS~~aA~a~sGlp 204 (384)
+.++++.+++|..++++| .++ ...+-..+.. .|+ +..+. |-+..+..++...|++
T Consensus 94 ~~~~l~~l~~g~~~~i~t-~~~------~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 166 (211)
T 2i6x_A 94 KFDYIDSLRPDYRLFLLS-NTN------PYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMK 166 (211)
T ss_dssp HHHHHHHHTTTSEEEEEE-CCC------HHHHHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCeEEEEe-CCC------HHHHHHHHhhhccccccCHHHHcCeEEeecccCCCCCCHHHHHHHHHHhCCC
Confidence 555677777788999997 332 1122222222 232 33332 5556788888999998
Q ss_pred CCcEEEEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHH
Q 016688 205 TDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252 (384)
Q Consensus 205 ~~~f~fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~ 252 (384)
.++..++|- ....+......+-..+....+..+++.++.++
T Consensus 167 ~~~~~~igD-------~~~Di~~a~~aG~~~~~~~~~~~~~~~l~~~l 207 (211)
T 2i6x_A 167 PEETLFIDD-------GPANVATAERLGFHTYCPDNGENWIPAITRLL 207 (211)
T ss_dssp GGGEEEECS-------CHHHHHHHHHTTCEEECCCTTCCCHHHHHHHH
T ss_pred hHHeEEeCC-------CHHHHHHHHHcCCEEEEECCHHHHHHHHHHHH
Confidence 888888742 12345555555666677777666766666543
No 28
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=45.30 E-value=65 Score=29.26 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=44.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh--hCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEE
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLK--SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~--~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~Val 158 (384)
..+.++- |+.+.-...|.+.+. .+|+|++-. -+..+|+.. .+.|++...- +.-+..+.+...-+.+.+|++
T Consensus 39 ~~I~vi~---~~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr~~-~~iPVV~I~v-s~~Dil~aL~~a~~~~~kIav 111 (225)
T 2pju_A 39 ANITPIQ---LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYLKSR-LSVPVILIKP-SGYDVLQFLAKAGKLTSSIGV 111 (225)
T ss_dssp CEEEEEC---CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHTTCTTSCEEE
T ss_pred ceEEEec---CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHHhh-CCCCEEEecC-CHHHHHHHHHHHHhhCCcEEE
Confidence 3455554 445666666777665 399999954 344566653 3578876543 233445555444445678999
Q ss_pred Ec
Q 016688 159 IS 160 (384)
Q Consensus 159 lS 160 (384)
++
T Consensus 112 Vg 113 (225)
T 2pju_A 112 VT 113 (225)
T ss_dssp EE
T ss_pred Ee
Confidence 94
No 29
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.22 E-value=1.4e+02 Score=26.19 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEc
Q 016688 91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (384)
Q Consensus 91 Gnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallS 160 (384)
|+.++-...|.+.=+.+|+|++-. -+..+|+.. .+.|++...- +.-+..+.+...-+.+.+|++++
T Consensus 36 ~~l~~~v~~a~~~~~~~dVIISRG--gta~~lr~~-~~iPVV~I~~-s~~Dil~al~~a~~~~~kIavvg 101 (196)
T 2q5c_A 36 ASLTRASKIAFGLQDEVDAIISRG--ATSDYIKKS-VSIPSISIKV-TRFDTMRAVYNAKRFGNELALIA 101 (196)
T ss_dssp CCHHHHHHHHHHHTTTCSEEEEEH--HHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHHGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCeEEEECC--hHHHHHHHh-CCCCEEEEcC-CHhHHHHHHHHHHhhCCcEEEEe
Confidence 456666666666524689999954 345666654 4578876643 23455565555555578999994
No 30
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=43.89 E-value=53 Score=27.71 Aligned_cols=90 Identities=12% Similarity=0.085 Sum_probs=46.4
Q ss_pred CeEEEEecCCCCc----cchhHHHHHHHhhCCEEEEcCCCC----cHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhC
Q 016688 81 PGLYLVATPIGNL----EDITLRALRVLKSANVILSEDTRH----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (384)
Q Consensus 81 g~LyiVGtGpGnp----~dITlrAl~~L~~ADvI~~edtr~----s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~ 152 (384)
+++++|- |+|.- .++-..-.+.++.+|.|+.-+.+. ...+.+.++ .+...+. +.++..+.+.+.++.
T Consensus 64 ~riivvf-~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~--d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 64 QRILAVL-EPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISAD--DVDELVMRIVQQAKP 138 (163)
T ss_dssp SCEEEEE-CCC---------CHHHHHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEES--SHHHHHHHHHHHCCT
T ss_pred CcEEEEE-CCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEEC--CHHHHHHHHHHhCCC
Confidence 4676663 55532 122233345677899888765431 122333332 2333232 345566777777766
Q ss_pred CCeEEEEccCCCCCCCcchHHHHHHh
Q 016688 153 GEIVALISDAGTPGISDPGTELAKLC 178 (384)
Q Consensus 153 Gk~VallSdaGDP~I~dpg~~Lv~~l 178 (384)
| +++++.=+|+ ++.-+..|++.+
T Consensus 139 g-DvVLv~Gsg~--~~~~~~~l~~~l 161 (163)
T 3mvn_A 139 N-DHILIMSNGA--FGGIHQKLLTAL 161 (163)
T ss_dssp T-CEEEEECSSC--GGGHHHHHHHHT
T ss_pred C-CEEEEECCCC--HHHHHHHHHHHH
Confidence 5 5555532454 777777777765
No 31
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=43.69 E-value=44 Score=35.74 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=55.7
Q ss_pred HHHHHhhCCEEEEcCCCCc-HHHHhhc---CCCCcEE-----ecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcc
Q 016688 100 ALRVLKSANVILSEDTRHS-GKLLQYY---NIKTPLL-----SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP 170 (384)
Q Consensus 100 Al~~L~~ADvI~~edtr~s-~~LL~~~---~i~~~li-----s~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dp 170 (384)
-.++|++-|+++... ..+ ..+++.+ ..+..+. .|.-.+.....+.+++++++|+.|-++-|.|-......
T Consensus 336 iF~~I~~~DiLl~~p-~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~ 414 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVP-YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEEN 414 (705)
T ss_dssp HHHHHHHCCEEEEET-TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----
T ss_pred HHHHHhhCCeEeeCh-hHhHHHHHHHHHHhccCCCceEEEEEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhh
Confidence 578999999999854 443 3344322 2222222 23222346788999999999999988778774332222
Q ss_pred hHHHHHHhhhCCCCEEEEcCc
Q 016688 171 GTELAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 171 g~~Lv~~l~~~gi~V~vIPGi 191 (384)
.....+.+.++|+.| +.|.
T Consensus 415 ni~wa~~Le~aGv~V--v~g~ 433 (705)
T 2o8r_A 415 NLRLSERMRRSGIRI--VYSM 433 (705)
T ss_dssp CHHHHHHHHHHTCEE--EECC
T ss_pred hHHHHHHHHHCCCEE--EEcc
Confidence 456678888888765 5553
No 32
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=40.61 E-value=79 Score=26.02 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=65.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhh---CCEE-EEcCCCCcHHHHhhcCC-CCcE--EecCCcchhhHHHHHHHHHhC-C
Q 016688 82 GLYLVATPIGNLEDITLRALRVLKS---ANVI-LSEDTRHSGKLLQYYNI-KTPL--LSYHKFNESQREQTVLNRLKQ-G 153 (384)
Q Consensus 82 ~LyiVGtGpGnp~dITlrAl~~L~~---ADvI-~~edtr~s~~LL~~~~i-~~~l--is~~~~ne~~~~~~Ii~~l~~-G 153 (384)
.-.++++..|+..++-.+-...+-+ -++| ++.+ ....++++.... +..+ ++...........++++.+++ |
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL-SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 4578899999999988775554433 4788 4543 233455554321 2233 333222223334555555543 4
Q ss_pred C-eEEEEccCCCCCCCcch-HHHHHHhhhCCCCEEEEcCccHHHHH
Q 016688 154 E-IVALISDAGTPGISDPG-TELAKLCVDEKIPVVPIPGASAFVAA 197 (384)
Q Consensus 154 k-~VallSdaGDP~I~dpg-~~Lv~~l~~~gi~V~vIPGiSS~~aA 197 (384)
. ++-++ ..|-|.+...- .+..+.+++.|++-..-||.+....+
T Consensus 83 ~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~ 127 (137)
T 1ccw_A 83 LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGI 127 (137)
T ss_dssp CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHH
T ss_pred CCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHH
Confidence 3 35555 47887664432 23355677888888888887765544
No 33
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=39.68 E-value=38 Score=33.02 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=61.7
Q ss_pred CeEEEEecCCC------------CccchhHHHHHHHhhC--CEEEEcC------CCCcHHHHhhcCCCCcEEecCC-cch
Q 016688 81 PGLYLVATPIG------------NLEDITLRALRVLKSA--NVILSED------TRHSGKLLQYYNIKTPLLSYHK-FNE 139 (384)
Q Consensus 81 g~LyiVGtGpG------------np~dITlrAl~~L~~A--DvI~~ed------tr~s~~LL~~~~i~~~lis~~~-~ne 139 (384)
+.+.+.|+++- |++.+-.||++.||+. |+++..| |-| -|.|+-. .-+. .|+
T Consensus 84 ~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~H-----GHcGil~---~~g~V~ND 155 (342)
T 1h7n_A 84 RSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSH-----GHCGVLY---DDGTINRE 155 (342)
T ss_dssp CEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTT-----CCSSCBC---TTSSBCHH
T ss_pred CEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCC-----CceeEEC---CCCcCccH
Confidence 46778888663 8999999999999984 4444433 322 1222210 0011 122
Q ss_pred ---hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCC--CEEEEc
Q 016688 140 ---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI--PVVPIP 189 (384)
Q Consensus 140 ---~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi--~V~vIP 189 (384)
+..++..+..++.|-+++--|| +.-++-..+.+.+.++|+ +|.|..
T Consensus 156 ~Tl~~Lak~Als~A~AGAdiVAPSd----MMDGrV~aIR~aLd~~G~~~~v~Ims 206 (342)
T 1h7n_A 156 RSVSRLAAVAVNYAKAGAHCVAPSD----MIDGRIRDIKRGLINANLAHKTFVLS 206 (342)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECC----CCTTHHHHHHHHHHHTTCTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCeeeccc----ccccHHHHHHHHHHHCCCccCceEee
Confidence 3344556677889999998885 455777888888888887 455543
No 34
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=38.91 E-value=1.5e+02 Score=28.50 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred HHHHHHhh-CCEEEEcCCCCcHHHHhhcCCCCcEE-ecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCC--cc----
Q 016688 99 RALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS--DP---- 170 (384)
Q Consensus 99 rAl~~L~~-ADvI~~edtr~s~~LL~~~~i~~~li-s~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~--dp---- 170 (384)
..++.|++ .|+.++=||+.+.-+-..+...+.++ +....+.++..+ ++... |-.|++....|+|--- .|
T Consensus 95 pvI~~l~~~~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~~~~m~~-v~a~~--g~~vVlMh~~G~P~tmq~~~~ydv 171 (314)
T 3tr9_A 95 PVIDAIKKRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDALT-TVSAL--KTPVCLMHFPSETRKPGSTTHFYF 171 (314)
T ss_dssp HHHHHHHHHCCSEEEEECSCHHHHHHHHHHTCCEEEETTTTCSTTHHH-HHHHH--TCCEEEECCCCTTCCTTSSCHHHH
T ss_pred HHHHHHHhhCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCchHHHH-HHHHh--CCeEEEECCCCCCcccccccccch
Confidence 45566655 59999999988754444443345665 233222223333 33332 5678888778988652 12
Q ss_pred -------hHHHHHHhhhCCCC---EEEEcCc
Q 016688 171 -------GTELAKLCVDEKIP---VVPIPGA 191 (384)
Q Consensus 171 -------g~~Lv~~l~~~gi~---V~vIPGi 191 (384)
..+.++.+.+.|++ +.+=||+
T Consensus 172 v~ev~~~l~~~i~~a~~~GI~~~~IilDPG~ 202 (314)
T 3tr9_A 172 LQSVKKELQESIQRCKKAGISEDRIIIDPGF 202 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCC
Confidence 12334455556663 6666654
No 35
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.77 E-value=68 Score=20.10 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=21.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHh
Q 016688 319 LRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRI 355 (384)
Q Consensus 319 ~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~ 355 (384)
+..+..+|++.++ +|+.+|+ ++..+|..+
T Consensus 14 i~~~~~~g~s~~~----IA~~lgi----s~~Tv~~~~ 42 (51)
T 1tc3_C 14 LDVMKLLNVSLHE----MSRKISR----SRHCIRVYL 42 (51)
T ss_dssp HHHHHHTTCCHHH----HHHHHTC----CHHHHHHHH
T ss_pred HHHHHHcCCCHHH----HHHHHCc----CHHHHHHHH
Confidence 3445568998665 4677899 999888755
No 36
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=37.34 E-value=59 Score=24.53 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHHHHCC-CCHHHHHHHHHHHhCCCccCChhHHHHHhhhh
Q 016688 310 PSEDQLEKELRGLISAG-HNLSMVTTTLVVFTFHIAVCPNKFLFCRISYR 358 (384)
Q Consensus 310 ~~~~~~~~~~~~l~~~g-~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~~~ 358 (384)
-+++++.+.+.... .| ||...| |++||+ |+..|+.|+.=+
T Consensus 14 Yte~~L~~Ai~aVr-~g~mS~~~A----ak~yGV----P~sTL~~RVk~~ 54 (70)
T 2cob_A 14 YNSEILEEAISVVM-SGKMSVSKA----QSIYGI----PHSTLEYKVKER 54 (70)
T ss_dssp CCHHHHHHHHHHHH-TTSSCHHHH----HHHHTC----CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-cCCccHHHH----HHHhCC----ChHHHHHHHHhh
Confidence 34556666665544 56 887766 578999 999999987654
No 37
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=37.34 E-value=87 Score=25.35 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEc
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIP 189 (384)
....+.+.+++++|-+|-++.+ +.+.........++.+.+.|++|...+
T Consensus 40 ~~i~~aL~~a~~rGV~Vril~~-~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 40 PDIMKALVAAKKRGVDVKIVID-ERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE-STTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEe-CccccccccHHHHHHHHHCCCeEEEcC
Confidence 4567778888899999988853 444433344567777888999998875
No 38
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=37.08 E-value=1.1e+02 Score=27.01 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHH
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~ 195 (384)
...+.+...++.|++|...+ .+.+...+...++.+.+++.|..+.+-+|.+--.
T Consensus 62 ~~~~~~~~~l~~G~~vv~~~-~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~ 115 (236)
T 2dc1_A 62 AVKDYAEKILKAGIDLIVLS-TGAFADRDFLSRVREVCRKTGRRVYIASGAIGGL 115 (236)
T ss_dssp HHHHHHHHHHHTTCEEEESC-GGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCH
T ss_pred HHHHHHHHHHHCCCcEEEEC-cccCChHHHHHHHHHHHHhcCCeEEecCccccCh
Confidence 33455567788898877664 4443333333678888888888877777766443
No 39
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=36.15 E-value=1.9e+02 Score=24.12 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEc-CccHHHH
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP-GASAFVA 196 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIP-GiSS~~a 196 (384)
.+..+++.+.+.+.++|.++. .|.. +..+.++...+...|.++..++ +.+.+..
T Consensus 26 ~~~l~~~~~~i~~a~~I~i~G-~G~S--~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~ 80 (187)
T 3sho_A 26 PEAIEAAVEAICRADHVIVVG-MGFS--AAVAVFLGHGLNSLGIRTTVLTEGGSTLTI 80 (187)
T ss_dssp HHHHHHHHHHHHHCSEEEEEC-CGGG--HHHHHHHHHHHHHTTCCEEEECCCTHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEe-cCch--HHHHHHHHHHHHhcCCCEEEecCCchhHHH
Confidence 345667777777778888883 4542 2344666677777899999998 4554443
No 40
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=36.05 E-value=1e+02 Score=25.11 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCEEEEcCCCCcHHHHh----hcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhh--
Q 016688 107 ANVILSEDTRHSGKLLQ----YYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-- 180 (384)
Q Consensus 107 ADvI~~edtr~s~~LL~----~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~-- 180 (384)
--+.+.+|....+.+++ ..|.. .+.... +..+..+.+ + +..-+++++ |.-+|... |.++++++++
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~-~v~~a~--~g~~al~~~-~--~~~~Dlill-D~~MP~md--G~el~~~ir~~~ 83 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFN-NTQEAD--DGLTALPML-K--KGDFDFVVT-DWNMPGMQ--GIDLLKNIRADE 83 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCC-CEEEES--SHHHHHHHH-H--HHCCSEEEE-ESCCSSSC--HHHHHHHHHHST
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCc-EEEEEC--CHHHHHHHH-H--hCCCCEEEE-cCCCCCCC--HHHHHHHHHhCC
Confidence 35788888765554443 33322 122222 222322222 2 124678888 99999987 6888888875
Q ss_pred --CCCCEEEEcCccHHHH
Q 016688 181 --EKIPVVPIPGASAFVA 196 (384)
Q Consensus 181 --~gi~V~vIPGiSS~~a 196 (384)
.+++|.++-|-+....
T Consensus 84 ~~~~ipvI~lTa~~~~~~ 101 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQ 101 (134)
T ss_dssp TTTTCCEEEEESSCCHHH
T ss_pred CCCCCeEEEEECCCCHHH
Confidence 3567777777654443
No 41
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=35.96 E-value=37 Score=23.60 Aligned_cols=30 Identities=0% Similarity=-0.291 Sum_probs=24.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHH
Q 016688 320 RGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFC 353 (384)
Q Consensus 320 ~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~ 353 (384)
..+++.|.+.+.++..+|+.+|+ ++..||.
T Consensus 15 ~~~~~~g~s~~~~~~~vA~~~gI----s~~tl~~ 44 (59)
T 2glo_A 15 LESYRNDNDCKGNQRATARKYNI----HRRQIQK 44 (59)
T ss_dssp HHHHHHCTTTTTCHHHHHHHTTS----CHHHHHH
T ss_pred HHHHHcCCCcchHHHHHHHHHCc----CHHHHHH
Confidence 45566788866678889999999 9999988
No 42
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=33.41 E-value=1.6e+02 Score=22.43 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred cchhHHHH-HHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchH
Q 016688 94 EDITLRAL-RVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (384)
Q Consensus 94 ~dITlrAl-~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~ 172 (384)
..||..-+ +.+++-+.++. |.|.....-...-+..--+++. + ....+..+..++.|++.|..|. ...
T Consensus 5 ~~i~~~~l~~~~~~~~~~li-DvR~~~e~~~ghIpgA~~ip~~-----~-l~~~~~~l~~~~~ivvyc~~g~-----rs~ 72 (108)
T 1gmx_A 5 ECINVADAHQKLQEKEAVLV-DIRDPQSFAMGHAVQAFHLTND-----T-LGAFMRDNDFDTPVMVMCYHGN-----SSK 72 (108)
T ss_dssp EEECHHHHHHHHHTTCCEEE-ECSCHHHHHHCEETTCEECCHH-----H-HHHHHHHSCTTSCEEEECSSSS-----HHH
T ss_pred cccCHHHHHHHHhCCCCEEE-EcCCHHHHHhCCCccCEeCCHH-----H-HHHHHHhcCCCCCEEEEcCCCc-----hHH
Confidence 34555444 45555567777 7787544322111122112221 1 2223344667788999976653 456
Q ss_pred HHHHHhhhCCC-CEEEEcCc
Q 016688 173 ELAKLCVDEKI-PVVPIPGA 191 (384)
Q Consensus 173 ~Lv~~l~~~gi-~V~vIPGi 191 (384)
.....+++.|+ +|..+.|-
T Consensus 73 ~a~~~L~~~G~~~v~~l~GG 92 (108)
T 1gmx_A 73 GAAQYLLQQGYDVVYSIDGG 92 (108)
T ss_dssp HHHHHHHHHTCSSEEEETTH
T ss_pred HHHHHHHHcCCceEEEecCC
Confidence 66677777788 47777653
No 43
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=32.91 E-value=1.6e+02 Score=22.26 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHhC-CCeEEEEccCCCCCCCcchHHHHHHhhhC----CCCEEEEcCccHHHH
Q 016688 147 LNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVA 196 (384)
Q Consensus 147 i~~l~~-Gk~VallSdaGDP~I~dpg~~Lv~~l~~~----gi~V~vIPGiSS~~a 196 (384)
++.+++ .-+++++ |...|... |..+++.+++. ++++.++-|-+....
T Consensus 39 l~~l~~~~~dlvll-D~~~p~~~--g~~~~~~l~~~~~~~~~pii~~s~~~~~~~ 90 (122)
T 3gl9_A 39 LEKLSEFTPDLIVL-XIMMPVMD--GFTVLKKLQEKEEWKRIPVIVLTAKGGEED 90 (122)
T ss_dssp HHHHTTBCCSEEEE-CSCCSSSC--HHHHHHHHHTSTTTTTSCEEEEESCCSHHH
T ss_pred HHHHHhcCCCEEEE-eccCCCCc--HHHHHHHHHhcccccCCCEEEEecCCchHH
Confidence 344443 3578888 99999865 67888888653 577877776554433
No 44
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=31.89 E-value=45 Score=26.78 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=52.0
Q ss_pred ccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCc------chhhHHHHHHHHHhCCCeEEEEccCCCCC
Q 016688 93 LEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKF------NESQREQTVLNRLKQGEIVALISDAGTPG 166 (384)
Q Consensus 93 p~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~------ne~~~~~~Ii~~l~~Gk~VallSdaGDP~ 166 (384)
...||..-+..+-+.+.++. |.|.....-...-+..--+++... ...+..+.+.+.+..++.|++.|..|.
T Consensus 17 ~~~is~~e~~~~l~~~~~lI-DvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~-- 93 (129)
T 1tq1_A 17 PSSVSVTVAHDLLLAGHRYL-DVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG-- 93 (129)
T ss_dssp CEEEEHHHHHHHHHHTCCEE-EESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS--
T ss_pred CcccCHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCc--
Confidence 34566544443333466666 677654433221112222232110 012233344444556778888876663
Q ss_pred CCcchHHHHHHhhhCCCC-EEEEcC-ccHHHHHHHHcCCCC
Q 016688 167 ISDPGTELAKLCVDEKIP-VVPIPG-ASAFVAALSASGLAT 205 (384)
Q Consensus 167 I~dpg~~Lv~~l~~~gi~-V~vIPG-iSS~~aA~a~sGlp~ 205 (384)
+.......+.+.|++ |..+.| ..+.. ..|.|+
T Consensus 94 ---rs~~aa~~L~~~G~~~v~~l~GG~~~W~----~~g~p~ 127 (129)
T 1tq1_A 94 ---RSIKATTDLLHAGFTGVKDIVGGYSAWA----KNGLPT 127 (129)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECCHHHHH----HHTCCC
T ss_pred ---HHHHHHHHHHHcCCCCeEEeCCcHHHHH----hCCCCC
Confidence 455666667777874 766655 45443 337665
No 45
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=30.60 E-value=60 Score=32.46 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHH
Q 016688 317 KELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCR 354 (384)
Q Consensus 317 ~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~ 354 (384)
+.+..+...|.+.++|++.+|+.+|+ +++.||.-
T Consensus 39 ~~v~~l~~~g~~~~~a~~~~a~~~gv----S~~Tl~rW 72 (529)
T 4fcy_A 39 QAADEMLNQGISTKTAFATVAGHYQV----SASTLRDK 72 (529)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTS----CHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhCC----CHHHHHHH
Confidence 34456778899999999999999999 99999883
No 46
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=30.05 E-value=1.9e+02 Score=22.39 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHhCC-CeEEEEcc-CCCCCCCcchHHHHHHhhhCCCCEEEEcCc
Q 016688 149 RLKQG-EIVALISD-AGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 149 ~l~~G-k~VallSd-aGDP~I~dpg~~Lv~~l~~~gi~V~vIPGi 191 (384)
.+.++ +.|++.|+ .| .........+++.|++|.++.|-
T Consensus 84 ~~~~~~~~ivvyC~~~G-----~rs~~a~~~L~~~G~~v~~l~GG 123 (134)
T 3g5j_A 84 ELALNYDNIVIYCARGG-----MRSGSIVNLLSSLGVNVYQLEGG 123 (134)
T ss_dssp HHHTTCSEEEEECSSSS-----HHHHHHHHHHHHTTCCCEEETTH
T ss_pred HhccCCCeEEEEECCCC-----hHHHHHHHHHHHcCCceEEEeCc
Confidence 34566 88998873 44 23456667777888888888763
No 47
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=28.98 E-value=89 Score=26.80 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=47.9
Q ss_pred CCccchhHHHHHHHhhCCEEEEcCCCCc-HHHHh---hcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCC
Q 016688 91 GNLEDITLRALRVLKSANVILSEDTRHS-GKLLQ---YYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGT 164 (384)
Q Consensus 91 Gnp~dITlrAl~~L~~ADvI~~edtr~s-~~LL~---~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGD 164 (384)
|++..+..+-++.|++||+|++.-+... ....+ .+..++|++.+.+.........+++-...|.++-+. +-.+
T Consensus 53 ~~~~~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~-~Y~~ 129 (152)
T 4fyk_A 53 GGDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVW-DYAE 129 (152)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEE-ECCT
T ss_pred CCHHHHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEE-EecH
Confidence 4667788999999999999999754322 11111 223467887765433334456677777777778777 5666
No 48
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=27.51 E-value=58 Score=31.55 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred CeEEEEecCCC-----------CccchhHHHHHHHhhC--C------EEEEcCCCCcHHHHhhcCCCCcEEecCC-cch-
Q 016688 81 PGLYLVATPIG-----------NLEDITLRALRVLKSA--N------VILSEDTRHSGKLLQYYNIKTPLLSYHK-FNE- 139 (384)
Q Consensus 81 g~LyiVGtGpG-----------np~dITlrAl~~L~~A--D------vI~~edtr~s~~LL~~~~i~~~lis~~~-~ne- 139 (384)
+.+.+.|+|.- |++.+-.||++.|++. | +-+||-|-| -|.|+-. .-+. .|+
T Consensus 74 ~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~H-----GHcGil~---~~g~v~ND~ 145 (330)
T 1pv8_A 74 RCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSH-----GHCGLLS---ENGAFRAEE 145 (330)
T ss_dssp CEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC-----------------------CHHHHH
T ss_pred CEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCC-----CceeEEC---CCCcCccHH
Confidence 35666676543 8999999999999984 4 444443333 1222210 0011 122
Q ss_pred --hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC--EEEEc
Q 016688 140 --SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP--VVPIP 189 (384)
Q Consensus 140 --~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~--V~vIP 189 (384)
+..++..+..++.|-+++--|| +.-++-..+.+.+.++|+. |.|..
T Consensus 146 Tl~~La~~Als~A~AGAdiVAPSd----MMDGrV~aIR~aLd~~G~~~~v~Ims 195 (330)
T 1pv8_A 146 SRQRLAEVALAYAKAGCQVVAPSD----MMDGRVEAIKEALMAHGLGNRVSVMS 195 (330)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECC------CCHHHHHHHHHHHTTCTTTCEEBC
T ss_pred HHHHHHHHHHHHHHcCCCeeeccc----ccccHHHHHHHHHHhCCCcCCceEee
Confidence 2344556677889999998885 4557778888888888874 55543
No 49
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.29 E-value=2.8e+02 Score=23.36 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHh------hhCCCCEEEEcCccHHHHHH
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC------VDEKIPVVPIPGASAFVAAL 198 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l------~~~gi~V~vIPGiSS~~aA~ 198 (384)
+.++.+.+.+.++++|.++- .|... -...++...+ ...|+++..+++.++...+.
T Consensus 33 ~~~~~i~~~i~~a~~I~i~G-~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSCG-NGGSA--GDAQHFSSELLNRFERERPSLPAVALTTDSSTITSI 93 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEEC-STHHH--HHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEc-CchhH--HHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHh
Confidence 44555667788888888883 55432 2334555556 45678888777655555443
No 50
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=27.12 E-value=2.3e+02 Score=26.30 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=44.6
Q ss_pred eEEEEecCCCCccch--hHHHHHHHhhC-CEEEEcCCCCcHHH---HhhcCCCCcEEe-cCCcchhhHHHHHHHHHh-CC
Q 016688 82 GLYLVATPIGNLEDI--TLRALRVLKSA-NVILSEDTRHSGKL---LQYYNIKTPLLS-YHKFNESQREQTVLNRLK-QG 153 (384)
Q Consensus 82 ~LyiVGtGpGnp~dI--TlrAl~~L~~A-DvI~~edtr~s~~L---L~~~~i~~~lis-~~~~ne~~~~~~Ii~~l~-~G 153 (384)
.+.=||.+.+..+.+ -...++.|++. |+.++=||..+.-+ ++.+. .+.++. ....+ ++.+.+...++ -|
T Consensus 49 diIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~-Ga~iINdvs~~~--d~~~~~~~~~a~~~ 125 (271)
T 2yci_X 49 HYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHR-GHAMINSTSADQ--WKMDIFFPMAKKYE 125 (271)
T ss_dssp SEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCC-SCCEEEEECSCH--HHHHHHHHHHHHHT
T ss_pred CEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCC-CCCEEEECCCCc--cccHHHHHHHHHcC
Confidence 466666666433332 24566677654 88888888776433 34442 556653 33222 22234444332 36
Q ss_pred CeEEEEcc--CCCCCC
Q 016688 154 EIVALISD--AGTPGI 167 (384)
Q Consensus 154 k~VallSd--aGDP~I 167 (384)
-.|++++- .|+|--
T Consensus 126 ~~vv~m~~d~~G~p~t 141 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKD 141 (271)
T ss_dssp CEEEEESCBTTBCCCS
T ss_pred CCEEEEecCCCCCCCC
Confidence 67777763 566653
No 51
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=27.06 E-value=2.3e+02 Score=22.51 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=48.1
Q ss_pred cchhHH-HHHHHh-hCCEEEEcCCCCcHHHHh-hcC------CCCcEEecCCcchhhHHHHHHHHH--hCCCeEEEEccC
Q 016688 94 EDITLR-ALRVLK-SANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFNESQREQTVLNRL--KQGEIVALISDA 162 (384)
Q Consensus 94 ~dITlr-Al~~L~-~ADvI~~edtr~s~~LL~-~~~------i~~~lis~~~~ne~~~~~~Ii~~l--~~Gk~VallSda 162 (384)
..||.. +.+.++ +-+.++. |-|.....-. ++. ....-+++.+.......+++.+.+ ..++.|++.|..
T Consensus 5 ~~is~~e~~~~l~~~~~~~li-DVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~s 83 (134)
T 1vee_A 5 SSGSAKNAYTKLGTDDNAQLL-DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKF 83 (134)
T ss_dssp CBCCHHHHHHHHHHCTTEEEE-ECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSS
T ss_pred CccCHHHHHHHHHhCCCeEEE-EcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCC
Confidence 446654 445565 3577877 7887654422 221 122233443321122223332222 446789999877
Q ss_pred CCCCCCcchHHHHHHhhhCCCC-EEEEcCc
Q 016688 163 GTPGISDPGTELAKLCVDEKIP-VVPIPGA 191 (384)
Q Consensus 163 GDP~I~dpg~~Lv~~l~~~gi~-V~vIPGi 191 (384)
|. +.......+.+.|+. |..+.|-
T Consensus 84 G~-----RS~~aa~~L~~~G~~~v~~l~GG 108 (134)
T 1vee_A 84 DG-----NSELVAELVALNGFKSAYAIKDG 108 (134)
T ss_dssp ST-----THHHHHHHHHHHTCSEEEECTTT
T ss_pred CC-----cHHHHHHHHHHcCCcceEEecCC
Confidence 73 445566667777884 7666553
No 52
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=26.92 E-value=2.4e+02 Score=24.96 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHhhhCCCCEEEEcCcc-----HHHHHHHHcCCC
Q 016688 173 ELAKLCVDEKIPVVPIPGAS-----AFVAALSASGLA 204 (384)
Q Consensus 173 ~Lv~~l~~~gi~V~vIPGiS-----S~~aA~a~sGlp 204 (384)
..++.+.+.+++-.++-+.. .....+...|+|
T Consensus 52 ~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 88 (305)
T 3g1w_A 52 TVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIP 88 (305)
T ss_dssp HHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCc
Confidence 44555555566655554332 133334455665
No 53
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=26.82 E-value=4.4e+02 Score=26.17 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcch---HHHHHHhhh-CCCCEEEEcCccHHHHHHHHcCCCCCcEEEE---E
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPG---TELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV---G 212 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg---~~Lv~~l~~-~gi~V~vIPGiSS~~aA~a~sGlp~~~f~fi---G 212 (384)
....+.|-..+++|-+|+++|--|-|+- ++. ....+++.+ .|.+|..+|-.---.+-.+...+...++..+ -
T Consensus 36 ~a~lpTI~~ll~~gakVvl~SHlGRPG~-~~~~SL~pva~~L~~lLg~~V~f~~d~~G~~a~~~i~~l~~G~VlLLEN~R 114 (410)
T 2cun_A 36 KAVLPTIRYLIESGAKVVIGTHQGKPYS-EDYTTTEEHARVLSELLDQHVEYIEDIFGRYAREKIKELKSGEVAILENLR 114 (410)
T ss_dssp HHTHHHHHHHHHTTCEEEEECCCSCTTC-TTCCCSHHHHHHHHHHHTSCEEECSCSSSHHHHHHHHTCCTTCEEECSCGG
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCCCCC-CCCcCHHHHHHHHHHHHCCCCeeCCCcCCHHHHHHHhcCCCCeEEEEcccc
Confidence 3456778788889999999999999953 221 223333333 2667877775432222233344444444333 2
Q ss_pred eccCCcchhH-------HHHHhhhcCCceEEE--ecCchhHHHHHHHHHHhhCCCceEEEEeecCCCceEEEEechhhHH
Q 016688 213 FLPKHARSRT-------ERLMLSANEVKTQIF--YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEFWRGTLGEAK 283 (384)
Q Consensus 213 flp~~~~~~~-------~~L~~l~~~~~TlVl--ye~p~ri~~~l~~L~e~lg~d~~v~VareLtk~~E~i~~gtl~eL~ 283 (384)
|.+...+... ..-+.++...+..|- |...||.......+... .+.+.+.-+-+ .++-+.
T Consensus 115 F~~eE~~nd~~e~~a~~~fa~~LA~l~DvyVNDAFgtaHRahaS~~Gi~~~----lps~aG~Lmek--------El~~l~ 182 (410)
T 2cun_A 115 FSAEEVKNKPIEECEKTFLVKKLSKVIDYVVNDAFATAHRSQPSLVGFARI----KPMIMGFLMEK--------EIEALM 182 (410)
T ss_dssp GBTTTTSCCCHHHHTTSHHHHHHHTTCSEEEECCGGGTTCCCHHHHTTTTT----SCEEECHHHHH--------HHHHHH
T ss_pred cccccccCCchhhhhHHHHHHHHHhhCCEEEecccccccccCCceechhhh----hhhhhhHHHHH--------HHHHHH
Confidence 3343322222 344566666665553 44457754433322221 12222221111 122333
Q ss_pred HHHHcCCCCCcEEEEEECCCc
Q 016688 284 EAFSSHQPKGEITVLVEGKAI 304 (384)
Q Consensus 284 ~~~~~~~~kGe~vlII~G~~~ 304 (384)
..+ + .+..+++.|+.|...
T Consensus 183 k~l-~-~p~rP~vaIlGGaKV 201 (410)
T 2cun_A 183 RAY-Y-SKDSPKIYVLGGAKV 201 (410)
T ss_dssp HHH-T-CCCSCEEEEECSSCH
T ss_pred HHh-c-CCCCCeEEEEcCcch
Confidence 222 2 357788888888765
No 54
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=26.78 E-value=2.6e+02 Score=23.45 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhh------hCCCCEEEEcCccHHHHHH
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV------DEKIPVVPIPGASAFVAAL 198 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~------~~gi~V~vIPGiSS~~aA~ 198 (384)
+..+.+.+.+.++++|.++- .|... -...++...+. ..|+++..+++-.+...|+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G-~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~ 89 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCG-NGTSA--ANAQHFAASMINRFETERPSLPAIALNTDNVVLTAI 89 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-STHHH--HHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEe-Cchhh--HHHHHHHHHHhccccccCCCCceEeecCchHHHHHH
Confidence 56778888888888988883 45422 23345555555 5678888777554444443
No 55
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.44 E-value=41 Score=24.12 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHhhhh
Q 016688 316 EKELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRISYR 358 (384)
Q Consensus 316 ~~~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~~~ 358 (384)
..++..|++-|.+...|.+.+ +.+|-.+++++-+--.|.||.
T Consensus 10 ~qmlq~L~eMGFd~erae~Al-k~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEMAGRAL-KQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH-HHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCHHHHHHHH-HHhCcccHHHHHHHHHHhcCC
Confidence 356788888899998877777 666666888888877787774
No 56
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=26.00 E-value=2.7e+02 Score=22.67 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=55.7
Q ss_pred HHHHHHHHh-CCCeEEEEccCCCCCCCcch----HHHHHHhhhCCCCEEE--------EcCccHHHHHHHHcCCCCCcEE
Q 016688 143 EQTVLNRLK-QGEIVALISDAGTPGISDPG----TELAKLCVDEKIPVVP--------IPGASAFVAALSASGLATDEFT 209 (384)
Q Consensus 143 ~~~Ii~~l~-~Gk~VallSdaGDP~I~dpg----~~Lv~~l~~~gi~V~v--------IPGiSS~~aA~a~sGlp~~~f~ 209 (384)
+.++++.++ +|..++++| .++....... ..+-..+ +..+ -|.+..+..++...|++.++..
T Consensus 96 ~~~~l~~l~~~g~~~~i~t-~~~~~~~~~~~~~~~~l~~~f-----~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 169 (206)
T 2b0c_A 96 VIAIMHKLREQGHRVVVLS-NTNRLHTTFWPEEYPEIRDAA-----DHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV 169 (206)
T ss_dssp HHHHHHHHHHTTCEEEEEE-CCCCCTTSCCGGGCHHHHHHC-----SEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHCCCeEEEEE-CCChHHHHHHHHhccChhhhe-----eeEEEecccCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence 444555555 789999997 4444332211 1122211 2222 2455578889999999998888
Q ss_pred EEEeccCCcchhHHHHHhhhcCCceEEEecCchhHHHHHH
Q 016688 210 FVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249 (384)
Q Consensus 210 fiGflp~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~ 249 (384)
++|- ....+......+-..+.+..+..+.+.++
T Consensus 170 ~vgD-------~~~Di~~a~~aG~~~~~~~~~~~~~~~l~ 202 (206)
T 2b0c_A 170 FFDD-------NADNIEGANQLGITSILVKDKTTIPDYFA 202 (206)
T ss_dssp EEES-------CHHHHHHHHTTTCEEEECCSTTHHHHHHH
T ss_pred EeCC-------CHHHHHHHHHcCCeEEEecCCchHHHHHH
Confidence 8853 12345555566666777777766665543
No 57
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=25.75 E-value=67 Score=27.07 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhCCCeEEEEccC--CCCCCCcchHHHHHHhhhC----CCCEEEEcCccHHHH
Q 016688 141 QREQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVA 196 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSda--GDP~I~dpg~~Lv~~l~~~----gi~V~vIPGiSS~~a 196 (384)
+.....++.+.+|..|.+++|- |+|.-. -.+.+.+. +.++++|.|++--..
T Consensus 46 ~~i~~~i~~~~~~~gvlvLtDl~GGSp~n~-----a~~~~~~~~~~~~~~v~vI~GvNLpml 102 (150)
T 3ipr_A 46 GQIKTAIENVQQGDGVLVMVDLLSASPYNQ-----AVLVINELEPALQKKIFVVSGTNLPMV 102 (150)
T ss_dssp HHHHHHHHHHCSSSCEEEEESSTTSHHHHH-----HHHHHTTSCHHHHTTEEEEESCCHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCCCCHHHH-----HHHHHHhhhhccCCCEEEEeCCCHHHH
Confidence 4455566666677788888887 776532 11222221 468999999985443
No 58
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=24.63 E-value=1.2e+02 Score=23.05 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=50.5
Q ss_pred hhHHHHH-HH-hhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHH
Q 016688 96 ITLRALR-VL-KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (384)
Q Consensus 96 ITlrAl~-~L-~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~ 173 (384)
||..-+. .| ++-++++. |.|.....-...-+...-+++.+. .+ .+..+..++.|++.|..| .....
T Consensus 4 is~~el~~~l~~~~~~~li-DvR~~~e~~~ghIpgA~~ip~~~l--~~----~~~~l~~~~~iv~yC~~g-----~rs~~ 71 (103)
T 3eme_A 4 ITTDELKNKLLESKPVQIV-DVRTDEETAMGYIPNAKLIPMDTI--PD----NLNSFNKNEIYYIVCAGG-----VRSAK 71 (103)
T ss_dssp ECHHHHHHGGGSSSCCEEE-ECSCHHHHTTCBCTTCEECCGGGG--GG----CGGGCCTTSEEEEECSSS-----SHHHH
T ss_pred cCHHHHHHHHhcCCCCEEE-ECCCHHHHhcCcCCCCEEcCHHHH--HH----HHHhCCCCCeEEEECCCC-----hHHHH
Confidence 4544443 35 34567777 777654332211112222333222 11 122345678899887655 34566
Q ss_pred HHHHhhhCCCCEEEEcCccHHHHHHHHcCCCC
Q 016688 174 LAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (384)
Q Consensus 174 Lv~~l~~~gi~V~vIPGiSS~~aA~a~sGlp~ 205 (384)
....+.+.|++|..+.|-- .+-...|.|.
T Consensus 72 a~~~L~~~G~~v~~l~GG~---~~W~~~g~p~ 100 (103)
T 3eme_A 72 VVEYLEANGIDAVNVEGGM---HAWGDEGLEI 100 (103)
T ss_dssp HHHHHHTTTCEEEEETTHH---HHHCSSSCBC
T ss_pred HHHHHHHCCCCeEEeCCCH---HHHHHCCCcC
Confidence 7777888899888887631 2233455554
No 59
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.39 E-value=92 Score=19.84 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 318 ELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 318 ~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
.+..+..+|++.++ +|+.+|+ ++..+|..+.
T Consensus 13 ~i~~l~~~g~s~~~----ia~~lgv----s~~Tv~r~l~ 43 (52)
T 1jko_C 13 QISRLLEKGHPRQQ----LAIIFGI----GVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHTTCCHHH----HHHTTSC----CHHHHHHHSC
T ss_pred HHHHHHHcCCCHHH----HHHHHCC----CHHHHHHHHH
Confidence 34455667887654 5677899 9999998654
No 60
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=23.86 E-value=66 Score=27.68 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhCCCeEEEEccC--CCCCCCcchHHHHHHhhhCCCCEEEEcCccHHHHH
Q 016688 140 SQREQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSda--GDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~aA 197 (384)
.++..+.++.+.+|..|.+++|- |+|+= ....+.+ +.++++|.|++--...
T Consensus 64 ~~~~~~~i~~~~~~~gVLiLtDl~GGSP~n------~a~~~~~-~~~v~vItGvNLpMll 116 (159)
T 3mtq_A 64 TQQVEALVARFPAQDELIVITDIFAGSVNN------EFVRFLS-RPHFHLLSGLNLPLII 116 (159)
T ss_dssp HHHHHHHHHTSCTTSEEEEEESCTTSHHHH------HHHGGGG-STTEEEEECCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCCHHH------HHHHHhc-CCCeEEEeCCCHHHHH
Confidence 34455555556668889888886 77631 2222222 5689999999865544
No 61
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=23.58 E-value=1.3e+02 Score=22.29 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHC----CCCHHHHHHHHHHHh-CCCccCChhHHHHH
Q 016688 309 TPSEDQLEKELRGLISA----GHNLSMVTTTLVVFT-FHIAVCPNKFLFCR 354 (384)
Q Consensus 309 ~~~~~~~~~~~~~l~~~----g~~~k~a~k~~a~~~-g~~~~~~~~~ly~~ 354 (384)
.++++++.+.+++++.. ..+.|+..+.+.+.+ |+ ..++||....+
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~-dLs~kK~~I~~ 60 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTY-DLTERKDFIKT 60 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSS-CCSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCC-CChHHHHHHHH
Confidence 46677788888887752 489999999999999 87 66666655543
No 62
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=23.25 E-value=65 Score=31.30 Aligned_cols=92 Identities=22% Similarity=0.182 Sum_probs=57.3
Q ss_pred CeEEEEecC-----------CCCccchhHHHHHHHhhC--CEEEEcC------CCCcHHHHhhcCCCCcEEecCC-cch-
Q 016688 81 PGLYLVATP-----------IGNLEDITLRALRVLKSA--NVILSED------TRHSGKLLQYYNIKTPLLSYHK-FNE- 139 (384)
Q Consensus 81 g~LyiVGtG-----------pGnp~dITlrAl~~L~~A--DvI~~ed------tr~s~~LL~~~~i~~~lis~~~-~ne- 139 (384)
+.+-+.|+. --|++.+-.||++.||++ |+++..| |-| -|.|+-.+ -+. .|+
T Consensus 81 ~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~H-----GHcGil~~---~g~V~ND~ 152 (337)
T 1w5q_A 81 PALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTH-----GQCGILDD---DGYVLNDV 152 (337)
T ss_dssp CEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTT-----CCSSCBCT---TSCBCHHH
T ss_pred CEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCC-----CcceeeCC---CCcCccHH
Confidence 356666662 228999999999999985 4444333 322 12232110 010 132
Q ss_pred --hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC
Q 016688 140 --SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (384)
Q Consensus 140 --~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~ 184 (384)
+..++..+..++.|-+++--|| +.-++-..+.+.+.++|+.
T Consensus 153 Tl~~L~k~Als~A~AGADiVAPSd----MMDGrV~aIR~aLd~~G~~ 195 (337)
T 1w5q_A 153 SIDVLVRQALSHAEAGAQVVAPSD----MMDGRIGAIREALESAGHT 195 (337)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECS----CCTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHcCCCeEeccc----ccccHHHHHHHHHHHCCCC
Confidence 3344556677899999998885 4457778888888888763
No 63
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=22.70 E-value=1.3e+02 Score=27.79 Aligned_cols=37 Identities=14% Similarity=-0.186 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHhC---CCccCChhHHHH
Q 016688 313 DQLEKELRGLISAGHNLSMVTTTLVVFTF---HIAVCPNKFLFC 353 (384)
Q Consensus 313 ~~~~~~~~~l~~~g~~~k~a~k~~a~~~g---~~~~~~~~~ly~ 353 (384)
.+....+..+..+|.+.+++++.+.+.+| + +++.+|.
T Consensus 9 ~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~v----s~~tv~~ 48 (345)
T 3hot_A 9 EQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVP----TVKTCER 48 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSC----CHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCC----cHHHHHH
Confidence 34555666677899999999999999999 7 8888776
No 64
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=22.56 E-value=3.2e+02 Score=25.88 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=33.8
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHHH--HhhcCCCCcEEe---cCCcchhhHHH--HHHHHHh--CCCeEEEEccCCCC
Q 016688 97 TLRALRVLKSANVILSEDTRHSGKL--LQYYNIKTPLLS---YHKFNESQREQ--TVLNRLK--QGEIVALISDAGTP 165 (384)
Q Consensus 97 TlrAl~~L~~ADvI~~edtr~s~~L--L~~~~i~~~lis---~~~~ne~~~~~--~Ii~~l~--~Gk~VallSdaGDP 165 (384)
|.|.+... +|+|+.-. .....+ +..+ ...|++. -++|+-+..++ .|.+... +|.+|+++ ||+
T Consensus 93 Tarvls~~--~D~iviR~-~~~~~~~~lA~~-~~vPVINag~~~~HPtQaLaDl~Ti~e~~g~l~glkva~v---GD~ 163 (309)
T 4f2g_A 93 SAQVISRM--VDIIMIRT-FEQDIIQRFAEN-SRVPVINGLTNEYHPCQVLADIFTYYEHRGPIRGKTVAWV---GDA 163 (309)
T ss_dssp HHHHHHHH--CSEEEEEC-SCHHHHHHHHHT-CSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEE---SCC
T ss_pred HHHHHHHh--CCEEEEec-CCHHHHHHHHHh-CCCCEEECCCCccCcHHHHHHHHHHHHHhCCCCCCEEEEE---CCC
Confidence 45555555 99999942 222222 2222 2457774 44555554444 2444432 58899998 774
No 65
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=22.51 E-value=3.4e+02 Score=25.26 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHHHhhC-CEEEEcCCCCcHHHHhhcCCCCcEEe-cCCcchhhHHHHHHHHHhCCCeEEEEccCCCCC
Q 016688 98 LRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQGEIVALISDAGTPG 166 (384)
Q Consensus 98 lrAl~~L~~A-DvI~~edtr~s~~LL~~~~i~~~lis-~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~ 166 (384)
...++.|++. |+.++=||+.+.-+-..+...+.++. ....+..+..+ ++... |-.|+++.-.|+|-
T Consensus 79 ~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa~iINdvsg~~d~~~~~-~~a~~--~~~vVlmh~~G~p~ 146 (282)
T 1aj0_A 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALE-AAAET--GLPVCLMHMQGNPK 146 (282)
T ss_dssp HHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTCCEEEETTTTCSTTHHH-HHHHH--TCCEEEECCSSCTT
T ss_pred HHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCHHHHH-HHHHh--CCeEEEEccCCCCc
Confidence 3455555543 88888898876554444444566662 22223333333 22222 55677776567775
No 66
>2wpv_B Ubiquitin-like protein MDY2; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_B
Probab=22.38 E-value=43 Score=24.18 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHh-------Hhcccccccc
Q 016688 362 FLFLQKFLVFLV-------FNFFKPLEEI 383 (384)
Q Consensus 362 ~~~~~~~~~~~~-------~~~~~~~~~~ 383 (384)
+-|..|||.... -||+|||+++
T Consensus 10 ~EFvsKFLtLatl~ep~l~~dy~kPl~~V 38 (59)
T 2wpv_B 10 HEFVSKFLTLATLTEPKLPKSYTKPLKDV 38 (59)
T ss_dssp HHHHHHHHHHHTSSCCSSCTTCBCCGGGC
T ss_pred HHHHHHHHHHHHhcCccchhhhhChHHHh
Confidence 457888887643 4899999986
No 67
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.28 E-value=57 Score=23.09 Aligned_cols=18 Identities=6% Similarity=-0.095 Sum_probs=15.4
Q ss_pred HHHHHhCCCccCChhHHHHHhh
Q 016688 335 TLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 335 ~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
.+|+..|+ +|+.||.|+.
T Consensus 38 ~aA~~LGI----sr~tL~rklk 55 (61)
T 1g2h_A 38 KLAQRLGV----SHTAIANKLK 55 (61)
T ss_dssp HHHHHTTS----CTHHHHHHHH
T ss_pred HHHHHhCC----CHHHHHHHHH
Confidence 56788999 9999999875
No 68
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=21.86 E-value=3.4e+02 Score=22.36 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=50.5
Q ss_pred HHHHHHH-hCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC--EE---EEcC--ccHHHHHHHHcCCCCCcEEEEEecc
Q 016688 144 QTVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIP--VV---PIPG--ASAFVAALSASGLATDEFTFVGFLP 215 (384)
Q Consensus 144 ~~Ii~~l-~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~--V~---vIPG--iSS~~aA~a~sGlp~~~f~fiGflp 215 (384)
.++++.+ ++|..++++| |.+. .......+...|+. +. +.++ +..+..++...|++.++..++|-
T Consensus 74 ~e~L~~L~~~G~~v~ivT--~~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~igD-- 145 (187)
T 2wm8_A 74 PEVLKRLQSLGVPGAAAS--RTSE----IEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDD-- 145 (187)
T ss_dssp HHHHHHHHHHTCCEEEEE--CCSC----HHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEES--
T ss_pred HHHHHHHHHCCceEEEEe--CCCC----hHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEeC--
Confidence 3344444 3578899996 3331 11122223334443 33 2344 34567778888988888887753
Q ss_pred CCcchhHHHHHhhhcCCceEEEecCchhHHHHHHHHH
Q 016688 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252 (384)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVlye~p~ri~~~l~~L~ 252 (384)
....+....+.+-..|.+..+....+..+.|.
T Consensus 146 -----~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~l~ 177 (187)
T 2wm8_A 146 -----ERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLE 177 (187)
T ss_dssp -----CHHHHHHHHTTTCEEEECSSSCCHHHHHHHHH
T ss_pred -----CccChHHHHHcCCEEEEECCCCChHHHHHHHH
Confidence 12345545455555666655544444444333
No 69
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=21.80 E-value=1.4e+02 Score=28.86 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=24.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh-hCCEEEEcCCCC--cHHHHhhcCC
Q 016688 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRH--SGKLLQYYNI 127 (384)
Q Consensus 81 g~LyiVGtGpGnp~dITlrAl~~L~-~ADvI~~edtr~--s~~LL~~~~i 127 (384)
-++-|||+|.|- .=++|+..+. .++++...|... ++++-+.+++
T Consensus 8 ~rv~VvG~G~g~---~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv 54 (372)
T 4gmf_A 8 QRVLIVGAKFGE---MYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGI 54 (372)
T ss_dssp EEEEEECSTTTH---HHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTC
T ss_pred CEEEEEehHHHH---HHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCC
Confidence 368899998763 3444544443 356765544221 3445556664
No 70
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.58 E-value=3.8e+02 Score=23.26 Aligned_cols=61 Identities=7% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHH-hCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCcc-----HHHHHHHHcCCCC
Q 016688 142 REQTVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS-----AFVAALSASGLAT 205 (384)
Q Consensus 142 ~~~~Ii~~l-~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiS-----S~~aA~a~sGlp~ 205 (384)
..+.+.+.+ +.|.++.+....+|+ +.-...++.+.+.+++-.++-+.. .....+...|+|.
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPv 89 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRND---QTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPL 89 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcE
Confidence 344444444 357777777322222 223456677777777777765443 2233445568873
No 71
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=21.43 E-value=33 Score=31.57 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=61.5
Q ss_pred EEecCCCCccchhHHHHHHH---hhCCEEEEcCCCCcHHHHhhcCCCC------cEE--ecCCcch-------------h
Q 016688 85 LVATPIGNLEDITLRALRVL---KSANVILSEDTRHSGKLLQYYNIKT------PLL--SYHKFNE-------------S 140 (384)
Q Consensus 85 iVGtGpGnp~dITlrAl~~L---~~ADvI~~edtr~s~~LL~~~~i~~------~li--s~~~~ne-------------~ 140 (384)
+||+|-|.--..-.+++-.. ..-+++..+.+..+..++..+++.. +.+ .++..+| .
T Consensus 24 vvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD~~iDGADEvd~~l~lIKGGGga 103 (228)
T 4gmk_A 24 IVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAA 103 (228)
T ss_dssp EEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHTTCCBCCGGGSSCEEEEEECCSEECTTSCEECCTTSC
T ss_pred EEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcHHHHHHHHHcCCceeChHHCCccceEeccHHHhhhchhhhhcchHH
Confidence 67777776555555554322 2357777766666777777777631 111 1111111 2
Q ss_pred hHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccHHH-HHHHHcCC
Q 016688 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV-AALSASGL 203 (384)
Q Consensus 141 ~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS~~-aA~a~sGl 203 (384)
-..++|+.... .+-|+++ |. ..++..+.+..++|||+|-..+.. -.+...|.
T Consensus 104 l~rEKivA~~a-~~fI~Ia-D~---------sK~v~~LG~fplPVEVip~a~~~v~~~l~~lG~ 156 (228)
T 4gmk_A 104 LLYEKIVATKS-NKNMWIV-DE---------SKMVDDLGQFPLPVEVIPYGSGTVFKRFEEKGL 156 (228)
T ss_dssp HHHHHHHHHHE-EEEEEEE-EG---------GGBCSSSCSSCEEEEECSTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-hheEEEe-cc---------ccccCccCCeeEEEEEehhhHHHHHHHHHHcCC
Confidence 23466776664 3566666 63 345555655679999999875444 45566664
No 72
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=21.34 E-value=2.3e+02 Score=22.75 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=54.3
Q ss_pred ccchhHHHH-HHHh-hCCEEEEcCCCCcHHHHh-hc--CCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCC
Q 016688 93 LEDITLRAL-RVLK-SANVILSEDTRHSGKLLQ-YY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGI 167 (384)
Q Consensus 93 p~dITlrAl-~~L~-~ADvI~~edtr~s~~LL~-~~--~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I 167 (384)
...||..-+ +.++ +-++++. |.|.....-. .. -+...-+++.+..+. .. +..+..++.|++.|..|.
T Consensus 22 ~~~is~~el~~~l~~~~~~~li-DVR~~~E~~~~gh~~IpgAinip~~~l~~~---~~-~~~l~~~~~ivvyC~~G~--- 93 (137)
T 1qxn_A 22 MVMLSPKDAYKLLQENPDITLI-DVRDPDELKAMGKPDVKNYKHMSRGKLEPL---LA-KSGLDPEKPVVVFCKTAA--- 93 (137)
T ss_dssp SEEECHHHHHHHHHHCTTSEEE-ECCCHHHHHHTCEECCSSEEECCTTTSHHH---HH-HHCCCTTSCEEEECCSSS---
T ss_pred CcccCHHHHHHHHhcCCCeEEE-ECCCHHHHHhcCCcCCCCCEEcchHHhhhH---Hh-hccCCCCCeEEEEcCCCc---
Confidence 344665444 4555 4567777 7787654433 22 112222333332211 11 233456788999986664
Q ss_pred CcchHHHHHHhhhCCC-CEEEEcCccHHHHHHHHcCCCC
Q 016688 168 SDPGTELAKLCVDEKI-PVVPIPGASAFVAALSASGLAT 205 (384)
Q Consensus 168 ~dpg~~Lv~~l~~~gi-~V~vIPGiSS~~aA~a~sGlp~ 205 (384)
+.......+++.|+ +|.++.|-- .+-...|.|.
T Consensus 94 --rS~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~ 127 (137)
T 1qxn_A 94 --RAALAGKTLREYGFKTIYNSEGGM---DKWLEEGLPS 127 (137)
T ss_dssp --CHHHHHHHHHHHTCSCEEEESSCH---HHHHHTTCCE
T ss_pred --HHHHHHHHHHHcCCcceEEEcCcH---HHHHHCCCCc
Confidence 45566677777888 587776542 2335567664
No 73
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=21.11 E-value=54 Score=31.74 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=56.4
Q ss_pred CeEEEEecC---------CCCccchhHHHHHHHhhC--CEEEEcCCCCcHHHHhhcCC--CCcEEecCC-cch---hhHH
Q 016688 81 PGLYLVATP---------IGNLEDITLRALRVLKSA--NVILSEDTRHSGKLLQYYNI--KTPLLSYHK-FNE---SQRE 143 (384)
Q Consensus 81 g~LyiVGtG---------pGnp~dITlrAl~~L~~A--DvI~~edtr~s~~LL~~~~i--~~~lis~~~-~ne---~~~~ 143 (384)
+.+-+.|+| --|++.+-.||++.||++ |+++..|.- |..|-. +.-++.-+. .|+ +..+
T Consensus 79 ~~v~LFgvp~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvc-----Lc~YT~HGHcGil~~g~V~ND~Tl~~L~ 153 (328)
T 1w1z_A 79 QGIDLFGIPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVA-----LDPFTPFGHDGLVKDGIILNDETVEVLQ 153 (328)
T ss_dssp CEEEEEECCSSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEEC-----STTTSTTSCSSEESSSCEEHHHHHHHHH
T ss_pred CEEEEECCCCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeee-----cccCCCCCceeeccCCcCccHHHHHHHH
Confidence 356666663 338999999999999985 444443421 111111 112221010 122 3344
Q ss_pred HHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCC
Q 016688 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 144 ~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi 183 (384)
+..+..++.|-+++--|| +.-++-..+.+.+.++|+
T Consensus 154 k~Als~A~AGADiVAPSd----MMDGrV~aIR~aLd~~G~ 189 (328)
T 1w1z_A 154 KMAVSHAEAGADFVSPSD----MMDGRIGAIREALDETDH 189 (328)
T ss_dssp HHHHHHHHHTCSEEEECS----CCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCeEeccc----ccccHHHHHHHHHHhCCC
Confidence 556677889999998885 445777788888888876
No 74
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=20.87 E-value=85 Score=28.01 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCCeEEEEccCCCCCCCcchHHHHHHhhhCCCCEEEEcCccH
Q 016688 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (384)
Q Consensus 152 ~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~V~vIPGiSS 193 (384)
+|++|++- ..|--+.++-+.++++.+++.|++|.++--.+|
T Consensus 6 ~~k~I~lg-iTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 6 AGKHVGFG-LTGSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TTCEEEEE-CCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 47888887 588888886788999999999998888855443
No 75
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=20.76 E-value=64 Score=22.82 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=14.8
Q ss_pred HHHHHhCCCccCChhHHHHHhh
Q 016688 335 TLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 335 ~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
.+|+..|+ +|+.||.++.
T Consensus 37 ~aA~~LGi----sr~tL~rklk 54 (63)
T 3e7l_A 37 RTAEEIGI----DLSNLYRKIK 54 (63)
T ss_dssp HHHHHHTC----CHHHHHHHHH
T ss_pred HHHHHHCc----CHHHHHHHHH
Confidence 45677899 9999999874
No 76
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=20.65 E-value=97 Score=29.47 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCchhhhhhhhhhcCCCCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEcCCCCcHHHHhhcCCC--CcEEecCCc
Q 016688 60 QTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK--TPLLSYHKF 137 (384)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~g~LyiVGtGpGnp~dITlrAl~~L~~ADvI~~edtr~s~~LL~~~~i~--~~lis~~~~ 137 (384)
-+..++.+.+-..-....+ |..+|.|.| ||-|+.+ -..+|+|+...+ .+. ..-+.. .-+++|++.
T Consensus 11 ~~r~~il~~l~~~i~~~~~----iig~gaGtG----lsAk~~e-~gGaDlii~yns---Grf-R~~G~~slag~lpygna 77 (286)
T 2p10_A 11 PTRSELVDRFQKKIRAGEP----IIGGGAGTG----LSAKSEE-AGDIDLIVIYNS---GRY-RMAGRGSLAGLLAYGNA 77 (286)
T ss_dssp CCHHHHHHHHHHHHHTTCC----EEEEEESSH----HHHHHHH-HTTCSEEEECHH---HHH-HHTTCCGGGGGBTEEEH
T ss_pred cCHHHHHHHHHHHHhcCCc----eEEEecccc----hhhHHHH-hCCCCEEEEecc---chh-hhcCccchhhhccccCH
Confidence 3456666666554442222 444444444 8888764 478999999643 222 222221 234566666
Q ss_pred ch--hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCCC
Q 016688 138 NE--SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (384)
Q Consensus 138 ne--~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi~ 184 (384)
|+ .+..++++-..++=--++=+ |+-||+.. .+..| +.+++.|+.
T Consensus 78 N~iv~e~~~evlp~v~~iPV~Agv-~~~DP~~~-~g~~L-e~lk~~Gf~ 123 (286)
T 2p10_A 78 NQIVVDMAREVLPVVRHTPVLAGV-NGTDPFMV-MSTFL-RELKEIGFA 123 (286)
T ss_dssp HHHHHHHHHHHGGGCSSSCEEEEE-CTTCTTCC-HHHHH-HHHHHHTCC
T ss_pred HHHHHHHHHhhhccCCCCCEEEEE-CCcCCCcC-HHHHH-HHHHHhCCc
Confidence 64 34445566555533445667 78899874 55666 888887753
No 77
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=20.62 E-value=65 Score=31.48 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCCccchhHHHHHHHhhC--CEEEEcCCCCcHHHHhhcCCC--CcEEec--CC-cch---hhHHHHHHHHHhCCCeEEE
Q 016688 89 PIGNLEDITLRALRVLKSA--NVILSEDTRHSGKLLQYYNIK--TPLLSY--HK-FNE---SQREQTVLNRLKQGEIVAL 158 (384)
Q Consensus 89 GpGnp~dITlrAl~~L~~A--DvI~~edtr~s~~LL~~~~i~--~~lis~--~~-~ne---~~~~~~Ii~~l~~Gk~Val 158 (384)
.--||+.+-.||++.|+++ |+++..|.- |..|-.+ .-++.- +. .|+ +..++..+..++.|-+++-
T Consensus 107 ~A~~~~g~v~rAir~iK~~~P~l~VitDVc-----Lc~YT~HGHcGil~~~~g~V~ND~Tl~~Lak~Als~A~AGADiVA 181 (356)
T 3obk_A 107 ESYNPDGLLPRAIMALKEAFPDVLLLADVA-----LDPYSSMGHDGVVDEQSGKIVNDLTVHQLCKQAITLARAGADMVC 181 (356)
T ss_dssp GGGCTTSHHHHHHHHHHHHSTTCEEEEEEC-----SGGGBTTCCSSCBCTTTCCBCHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred cccCCCChHHHHHHHHHHHCCCCEEEEeec-----cccccCCCcceeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 4448899999999999985 555444421 1211111 111110 00 122 3344556677889999998
Q ss_pred EccCCCCCCCcchHHHHHHhhhCCC
Q 016688 159 ISDAGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 159 lSdaGDP~I~dpg~~Lv~~l~~~gi 183 (384)
-|| +.-++-..+.+.+.++|+
T Consensus 182 PSd----MMDGrV~aIR~aLd~~G~ 202 (356)
T 3obk_A 182 PSD----MMDGRVSAIRESLDMEGC 202 (356)
T ss_dssp ECS----CCTTHHHHHHHHHHHTTC
T ss_pred ccc----cccCHHHHHHHHHHHCCC
Confidence 885 445777788888888775
No 78
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.61 E-value=1.9e+02 Score=19.08 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=22.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCccCChhHHHHHhh
Q 016688 318 ELRGLISAGHNLSMVTTTLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 318 ~~~~l~~~g~~~k~a~k~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
.+..+...|++.++ +|+.+|+ ++..+|..+.
T Consensus 23 ~i~~l~~~g~s~~e----IA~~lgi----s~~TV~~~l~ 53 (55)
T 2x48_A 23 VAHELAKMGYTVQQ----IANALGV----SERKVRRYLE 53 (55)
T ss_dssp HHHHHHHTTCCHHH----HHHHHTS----CHHHHHHHHT
T ss_pred HHHHHHHcCCCHHH----HHHHHCc----CHHHHHHHHH
Confidence 34455668998775 4677899 9988887653
No 79
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.59 E-value=61 Score=24.79 Aligned_cols=18 Identities=6% Similarity=-0.215 Sum_probs=14.9
Q ss_pred HHHHHhCCCccCChhHHHHHhh
Q 016688 335 TLVVFTFHIAVCPNKFLFCRIS 356 (384)
Q Consensus 335 ~~a~~~g~~~~~~~~~ly~~~~ 356 (384)
.+|+..|+ +|+.||.|+.
T Consensus 59 ~AA~~LGI----SR~TLyrKLk 76 (81)
T 1umq_A 59 ETARRLNM----HRRTLQRILA 76 (81)
T ss_dssp HHHHHHTS----CHHHHHHHHH
T ss_pred HHHHHhCC----CHHHHHHHHH
Confidence 45677899 9999999875
No 80
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=20.37 E-value=3.7e+02 Score=25.90 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=33.4
Q ss_pred hHHHHHHHhhCCEEEEcCCCCcHH--HHhhcCCCCcEEe---cCCcchhhHHH--HHHHHHh--CCCeEEEEccCCCC
Q 016688 97 TLRALRVLKSANVILSEDTRHSGK--LLQYYNIKTPLLS---YHKFNESQREQ--TVLNRLK--QGEIVALISDAGTP 165 (384)
Q Consensus 97 TlrAl~~L~~ADvI~~edtr~s~~--LL~~~~i~~~lis---~~~~ne~~~~~--~Ii~~l~--~Gk~VallSdaGDP 165 (384)
|.|.+... +|+|+.- +..... .+..+ ...|++. -++|+-+..++ .|.+... +|.+|+++ ||+
T Consensus 118 TarvLs~y--~D~IviR-~~~~~~~~~lA~~-~~vPVINag~~~~HPtQaLaDl~TI~E~~G~l~glkva~v---GD~ 188 (340)
T 4ep1_A 118 TAKVLSHY--IDGIMIR-TFSHADVEELAKE-SSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYV---GDG 188 (340)
T ss_dssp HHHHHHHH--CSEEEEE-CSCHHHHHHHHHH-CSSCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEE---SCC
T ss_pred HHHHHHHh--CCEEEEe-cCChhHHHHHHHh-CCCCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEE---CCC
Confidence 55555555 9999983 222221 12222 2457774 23454444443 2444432 58899998 775
No 81
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=20.35 E-value=82 Score=23.84 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=45.3
Q ss_pred hhHHHH-HHH-hhCCEEEEcCCCCcHHHHhhcCCCCcEEecCCcchhhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHH
Q 016688 96 ITLRAL-RVL-KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (384)
Q Consensus 96 ITlrAl-~~L-~~ADvI~~edtr~s~~LL~~~~i~~~lis~~~~ne~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~ 173 (384)
||..-+ +.| +.-++++. |.|.....-...-+...-+++.+. .+ .++.+..++.|++.|..| .....
T Consensus 4 is~~el~~~l~~~~~~~li-DvR~~~e~~~ghIpgA~~ip~~~l--~~----~~~~l~~~~~ivvyC~~g-----~rs~~ 71 (100)
T 3foj_A 4 ITVTELKEKILDANPVNIV-DVRTDQETAMGIIPGAETIPMNSI--PD----NLNYFNDNETYYIICKAG-----GRSAQ 71 (100)
T ss_dssp ECHHHHHHGGGSSSCCEEE-ECSCHHHHTTCBCTTCEECCGGGG--GG----CGGGSCTTSEEEEECSSS-----HHHHH
T ss_pred cCHHHHHHHHhcCCCcEEE-ECCCHHHHhcCcCCCCEECCHHHH--HH----HHHhCCCCCcEEEEcCCC-----chHHH
Confidence 444433 345 34567777 777654332211112222333222 11 122345678899887555 34566
Q ss_pred HHHHhhhCCCCEEEEcCc
Q 016688 174 LAKLCVDEKIPVVPIPGA 191 (384)
Q Consensus 174 Lv~~l~~~gi~V~vIPGi 191 (384)
....+++.|++|..+.|-
T Consensus 72 a~~~L~~~G~~v~~l~GG 89 (100)
T 3foj_A 72 VVQYLEQNGVNAVNVEGG 89 (100)
T ss_dssp HHHHHHTTTCEEEEETTH
T ss_pred HHHHHHHCCCCEEEeccc
Confidence 677778888888888763
No 82
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.32 E-value=2.3e+02 Score=25.83 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCC
Q 016688 140 SQREQTVLNRLKQGEIVALISDAG 163 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaG 163 (384)
++..+.+.+..-+.++|+++.+.+
T Consensus 127 ~~~l~l~~~l~P~~k~vgvi~~~~ 150 (302)
T 3lkv_A 127 EQHVELIKEILPNVKSIGVVYNPG 150 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECTT
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCC
Confidence 445555555555678898885443
No 83
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=20.27 E-value=60 Score=31.33 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=56.2
Q ss_pred CeEEEEecC---------CCCccchhHHHHHHHhhC--CEEEEcC------CCCcHHHHhhcCCCCcEEecCC-cch---
Q 016688 81 PGLYLVATP---------IGNLEDITLRALRVLKSA--NVILSED------TRHSGKLLQYYNIKTPLLSYHK-FNE--- 139 (384)
Q Consensus 81 g~LyiVGtG---------pGnp~dITlrAl~~L~~A--DvI~~ed------tr~s~~LL~~~~i~~~lis~~~-~ne--- 139 (384)
+.+.+.|+| --|++.+-.||++.|+++ |+++..| |-| -|.|+ +.-+. .|+
T Consensus 73 ~~v~LFgvp~~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~H-----GHcGi----l~~g~V~ND~Tl 143 (323)
T 1l6s_A 73 RSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSH-----GHCGV----LCEHGVDNDATL 143 (323)
T ss_dssp CEEEEEEECSSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSS-----CCSSC----BCSSSBCHHHHH
T ss_pred CEEEEeCCCCCCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCC-----CceEe----ccCCcCccHHHH
Confidence 356666653 338999999999999985 4444433 322 12222 11011 132
Q ss_pred hhHHHHHHHHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhCCC
Q 016688 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI 183 (384)
Q Consensus 140 ~~~~~~Ii~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~gi 183 (384)
+..++..+..++.|-+++--|| +.-+.-..+.+.+.++|+
T Consensus 144 ~~Lak~Als~A~AGAdiVAPSd----MMDGrV~aIR~aLd~~G~ 183 (323)
T 1l6s_A 144 ENLGKQAVVAAAAGADFIAPSA----AMDGQVQAIRQALDAAGF 183 (323)
T ss_dssp HHHHHHHHHHHHHTCSEEEECS----CCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCeEeccc----ccccHHHHHHHHHHhCCC
Confidence 2344556677889999998885 445777788888888876
No 84
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=20.12 E-value=2e+02 Score=21.55 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHhCCCeEEEEccCCCCCCCcchHHHHHHhhhC--CCCEEEEcCccH
Q 016688 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASA 193 (384)
Q Consensus 148 ~~l~~Gk~VallSdaGDP~I~dpg~~Lv~~l~~~--gi~V~vIPGiSS 193 (384)
+.+.+.-+++++ |...|.. .|..+++.+++. ++++.++-+-..
T Consensus 41 ~~~~~~~dlvi~-D~~l~~~--~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 41 TLSLNKQDIIIL-DLMMPDM--DGIEVIRHLAEHKSPASLILISGYDS 85 (135)
T ss_dssp TSCCCTTEEEEE-ECCTTTT--HHHHHHHHHHHTTCCCEEEEEESSCH
T ss_pred HhhccCCCEEEE-eCCCCCC--CHHHHHHHHHhCCCCCCEEEEEeccc
Confidence 334444678888 8888864 467788887764 355555555544
Done!