BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016689
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 8/132 (6%)
Query: 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHF 173
R+LH + RVGDL ++I+ FYT+ LGMKLLR + PE +Y+ AF+GYGPE
Sbjct: 2 RLLHTMLRVGDLQRSID--------FYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEA 53
Query: 174 VVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFI 233
V+ELTYN+GVDKY++GT +GH ++V++ A+ + ++ GG VTRE GPVKGG TVIAF+
Sbjct: 54 VIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFV 113
Query: 234 EDPDGYKFELLE 245
EDPDGYK EL+E
Sbjct: 114 EDPDGYKIELIE 125
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 84/126 (66%)
Query: 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 312
L MLRVGDL R+I+FY K GM+LLR +NP+YKY++A +GYGPE + AV+ELTYN G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 313 VTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSV 372
V +Y+ G Y IA+ D+ + E I+ +GG +TRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 373 FVDNLD 378
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 82/132 (62%), Gaps = 13/132 (9%)
Query: 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSH 172
RRMLH + RVGDLD++I +FYTE LGMK+LRK D+PED+YT FLGYGPE S
Sbjct: 7 RRMLHTMIRVGDLDRSI--------KFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSS 58
Query: 173 FVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAF 232
V+ELTYNYGV Y +GH I VEDV + V ++ + E + +AF
Sbjct: 59 TVLELTYNYGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYE-----DESGFMAF 113
Query: 233 IEDPDGYKFELL 244
+ DPDGY ELL
Sbjct: 114 VVDPDGYYIELL 125
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 312
+ M+RVGDLDR+I FY + GM++LRK D P+ KYT+ +GYGPE + VLELTYN+G
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 313 VTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGW 369
VT Y Y IAIG +DV + ++ I E + + +DPDG+
Sbjct: 69 VTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYEDE-----SGFMAFVVDPDGY 120
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 126/285 (44%), Gaps = 45/285 (15%)
Query: 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED-----------RYTN 161
RR LH V++VG+ +T RFY + LGMK+LR + E +++
Sbjct: 26 RRALHFVFKVGNRFQT--------ARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSK 77
Query: 162 AFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 221
+G+GPED HFV ELTYNYGV Y +G F GI + + K +
Sbjct: 78 TMVGFGPEDDHFVAELTYNYGVGDYKLGNDF--MGITLASSQAVSNARKLE--------W 127
Query: 222 PVKGGNTVIAFIEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLR 280
P+ + E P GYKF L R P +P+ +V L V DL +++N++ GM++
Sbjct: 128 PLTEVAEGVFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYE 187
Query: 281 KRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIK 340
D + A++GY D LEL G ++ G + ++ + +K
Sbjct: 188 N----DEEKQRALLGYA--DNQCKLELQGVKGGVDHAAAFGRIAFSCPQKELPDLEDLMK 241
Query: 341 LSGGKITREPGPLPGINT------KITACLDPDGWKSVFVDNLDF 379
KI PL ++T ++ DPDG + FV + F
Sbjct: 242 RENQKILT---PLVSLDTPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 38/156 (24%)
Query: 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYG-----PE 169
+ + R+ D K+++ FYT LG+ LL+K D P +++ FL Y P+
Sbjct: 32 LQQTMLRIKDPKKSLD--------FYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPK 83
Query: 170 DS----------HFVVELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDLVK 210
D +ELT+N+G + + + GFGH GIAV DV +
Sbjct: 84 DKSEKTAWTFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFE 143
Query: 211 AKGGKVTREP--GPVKGGNTVIAFIEDPDGYKFELL 244
G K ++P G +KG +AFI+DPDGY E+L
Sbjct: 144 ELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 219 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 275
EP P G T + DPD + L L Q MLR+ D ++++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 276 MELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 315
+ LL+K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 316 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 367
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 368 GW 369
G+
Sbjct: 169 GY 170
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 42/158 (26%)
Query: 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV 174
+ + RV D K+++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLD--------FYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDI 80
Query: 175 -----------------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDL 208
+ELT+N+G + + + GFGH GIAV DV
Sbjct: 81 PKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKR 140
Query: 209 VKAKGGKVTREP--GPVKGGNTVIAFIEDPDGYKFELL 244
+ G K ++P G +KG +AFI+DPDGY E+L
Sbjct: 141 FEELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 81/190 (42%), Gaps = 46/190 (24%)
Query: 219 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 275
EP P GG T ++ D D + L L Q MLRV D ++++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 276 MELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE--- 315
M L++K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 316 --YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLDPD 367
Y GN G+ I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 368 G-WKSVFVDN 376
G W + N
Sbjct: 168 GYWIEILNPN 177
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 42/158 (26%)
Query: 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV 174
+ + RV D K+++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLD--------FYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDI 84
Query: 175 -----------------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDL 208
+ELT+N+G + + + GFGH GIAV DV
Sbjct: 85 PKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKR 144
Query: 209 VKAKGGKVTREP--GPVKGGNTVIAFIEDPDGYKFELL 244
+ G K ++P G +KG +AFI+DPDGY E+L
Sbjct: 145 FEELGVKFVKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 82/195 (42%), Gaps = 46/195 (23%)
Query: 214 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFY 270
G EP P GG T ++ D D + L L Q MLRV D ++++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 271 KKAFGMELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGV 313
+ GM L++K D P K+++ + Y EDKN A LELT+N G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 314 TE-----YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITA 362
+ Y GN G+ I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 363 CLDPDG-WKSVFVDN 376
DPDG W + N
Sbjct: 167 IQDPDGYWIEILNPN 181
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 42/158 (26%)
Query: 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFV 174
+ + RV D K+++ FYT LGM L++K D P +++ FL Y ED + +
Sbjct: 31 LQETMLRVKDPKKSLD--------FYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDI 80
Query: 175 -----------------VELTYNYGVDKYDIGT---------GFGHFGIAVEDVAKTVDL 208
+ELT+N+G + + + GFGH GIAV DV
Sbjct: 81 PKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKR 140
Query: 209 VKAKGGKVTREP--GPVKGGNTVIAFIEDPDGYKFELL 244
+ G K ++P G +KG +AFI+DPDGY ++L
Sbjct: 141 FEELGVKFVKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 80/192 (41%), Gaps = 50/192 (26%)
Query: 219 EPGPVKGGNTVIAFIE-----DPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKA 273
EP P GG T A + DP F L E MLRV D ++++FY +
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFLLQE----------TMLRVKDPKKSLDFYTRV 51
Query: 274 FGMELLRKRDNPDYKYTIAVMGYGPEDKN-----------------AVLELTYNHGVTE- 315
GM L++K D P K+++ + Y EDKN A LELT+N G +
Sbjct: 52 LGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDD 109
Query: 316 ----YDKGN----GYAQIAIGTDDVYKTAEAIKLSGGKITREP--GPLPGINTKITACLD 365
Y GN G+ I I DVY + + G K ++P G + G + D
Sbjct: 110 ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQD 165
Query: 366 PDG-WKSVFVDN 376
PDG W + N
Sbjct: 166 PDGYWIQILNPN 177
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 139 FYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKY--DIGTGFGHFG 196
FY L +KLL D+P AFL G + L+ + K+ G G H
Sbjct: 25 FYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEESPIAKFIQKRGEGIHHIA 84
Query: 197 IAVEDVAKTVDLVKAKGGK-VTREPGP-VKGGNTVIAFIEDPDGYKFELLERGPTPEPL 253
I V+ + + + VK G + + EP P +G G +E E+ E L
Sbjct: 85 IGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSARGVLYEFCEKKEQAENL 143
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLE-LTYNH 311
L + + V + + FY + ++LL D P IA + G E K +LE L+
Sbjct: 9 LDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIG-ESKIELLEPLSEES 67
Query: 312 GVTEY--DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGW 369
+ ++ +G G IAIG + + + +K +G ++ + P+PG A L P
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDE-PVPGARGAQVAFLHPRSA 126
Query: 370 KSVFVD 375
+ V +
Sbjct: 127 RGVLYE 132
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 139 FYTECLGMKLLRKRDIP--EDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD---IGTGFG 193
FYT LG L K D+P DR+ P+ + ++E + + V + + G
Sbjct: 43 FYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQLLLEPSSHAAVTPFKEALVADGIP 100
Query: 194 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245
AV+D+A + + A G + T+E P G V A ++D G +L +
Sbjct: 101 AASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVVTAILDDTCGNLIQLXQ 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 139 FYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 198
FY E LG ++LR+ PE L G ++ + + Y G H
Sbjct: 22 FYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP-ARPSYPEALGLRHLAFK 80
Query: 199 VEDVAKTVDLVKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKFELLE 245
VE + + + + +G + EP V F DPDG EL E
Sbjct: 81 VEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGLPLELHE 126
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 166 YGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDL------VKAKGGKVTRE 219
+ PE+ + E G D TGFG G ++EDVA V + VKA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|4HC5|A Chain A, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|B Chain B, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|C Chain C, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
pdb|4HC5|D Chain D, Crystal Structure Of Member Of GlyoxalaseBLEOMYCIN
RESISTANCE ProteinDIOXYGENASE SUPERFAMILY FROM
SPHAEROBACTER THERMOPHILUS DSM 20745
Length = 133
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 260 VGDLDRAINFYKKAFGME-LLRKRDNPDYKYTIAVMGYGPEDKNAV-LELTYNHGVTEYD 317
V D ++A++FY G E + + +P+ ++ + V+ G + + A+ L Y G
Sbjct: 21 VSDQEKALDFYVNTLGFEKVFDNQLDPNXRF-VTVVPPGAQTQVALGLPSWYEDG----R 75
Query: 318 KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDG 368
K GY I++ T D+ + + + G T+ P P + T DPDG
Sbjct: 76 KPGGYTGISLITRDIDEAYKTLTERGVTFTKPPEXXP-WGQRATWFSDPDG 125
>pdb|1I9W|A Chain A, Crystal Structure Of The Fusion Glycoprotein E1 From
Semliki Forest Virus
Length = 390
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 165 GYGPEDSHFVVELTYNYGVDKYDIGTGF-GHFGIAVEDVAKTVDLVKAKGGKVTREPGPV 223
+ P D+ VV + D G+G G FG ++ DL K+ R P P
Sbjct: 169 AWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLAR-PSP- 226
Query: 224 KGGNTVIAFIEDPDGYKFELLERGP---TPEPL-CQVM--------LRVGDLDRAINFYK 271
G + + + P G+K+ L E+G T P CQ+ VG++ ++N
Sbjct: 227 --GMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPD 284
Query: 272 KAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY 309
AF ++ D T+A + D VL LTY
Sbjct: 285 SAF-TRIVEAPTIIDLTCTVATCTHS-SDFGGVLTLTY 320
>pdb|1RER|A Chain A, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|B Chain B, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|1RER|C Chain C, Crystal Structure Of The Homotrimer Of Fusion Glycoprotein
E1 From Semliki Forest Virus.
pdb|2ALA|A Chain A, Crystal Structure Of The Semliki Forest Virus Envelope
Protein E1 In Its Monomeric Conformation
Length = 391
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 165 GYGPEDSHFVVELTYNYGVDKYDIGTGF-GHFGIAVEDVAKTVDLVKAKGGKVTREPGPV 223
+ P D+ VV + D G+G G FG ++ DL K+ R P P
Sbjct: 169 AWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLAR-PSP- 226
Query: 224 KGGNTVIAFIEDPDGYKFELLERGP---TPEPL-CQVM--------LRVGDLDRAINFYK 271
G + + + P G+K+ L E+G T P CQ+ VG++ ++N
Sbjct: 227 --GMVHVPYTQTPSGFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPD 284
Query: 272 KAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY 309
AF ++ D T+A + D VL LTY
Sbjct: 285 SAF-TRIVEAPTIIDLTCTVATCTHS-SDFGGVLTLTY 320
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG 312
L V + V DL++A FYK G ++ P++ ++ + G N +EL + G
Sbjct: 6 LNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLG----NTKMELLHPLG 61
Query: 313 V-------TEYDKGNGYAQIAIGTDDV 332
+ + +K G I I D++
Sbjct: 62 LDSPIAGFLQKNKAGGMHHICIEVDNI 88
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 72 KALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTINS 131
K ++L R G E T+ + ++ LD+ + + V Y DL K +
Sbjct: 473 KVVELQRLRGGLFEMLTACRLPWVEVGLS----LDYYPKLLKAITGVTYTWDDLYKAADR 528
Query: 132 LGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191
+ ++ K RK D P R+ L GP + E Y+ + +Y G
Sbjct: 529 VYSLIRAYWVREFNGKWDRKMDYPPKRWFTEGLKSGPHKGEHLDEKKYDELLSEYYRIRG 588
Query: 192 FGHFGIAVEDVAKTVDL 208
+ GI ++ K +DL
Sbjct: 589 WDERGIPKKETLKELDL 605
>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
Length = 364
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYN 310
+PLCQV + D + F +A ++ + RD A + +G A + + N
Sbjct: 12 QPLCQVSEELDDQPKGALFTLQAAASKIQKMRDAALRASIYAEINHGTNRAKAAV-IVAN 70
Query: 311 HGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSG 343
H + D G + + + +V TA A L G
Sbjct: 71 HYAMKADSGLEALKQTLSSQEVTATATASYLKG 103
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 266 AINFYKKAFGMELLRKRDNPDYKYT-------IAVMGYGPEDKNAVLELTYNHGVTEYDK 318
AINF G++L++KR + +AV+ PE + ++E + +G+ E
Sbjct: 103 AINFED---GVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGAN 159
Query: 319 GNGYAQIAIGTDDVY--KTAEAIKLSGGKITREPGPLP 354
N QI I + V K E IK GG+ + P P
Sbjct: 160 YNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAP 197
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 198 AVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 231
AVEDV K DL+KA G+ +P VK GN V A
Sbjct: 12 AVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRA 46
>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
Length = 181
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 197 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 231
+AVEDV K DL+K+ G+ +P VK GN V A
Sbjct: 11 VAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRA 46
>pdb|2JLN|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter
pdb|2JLO|A Chain A, Structure Of Mhp1, A Nucleobase-Cation-Symport-1 Family
Transporter, In A Closed Conformation With
Benzylhydantoin
Length = 501
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 303 AVLELTYNHGVTEYDKGNGYAQ---IAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTK 359
A+ +T +G+T N +A +A+G VY + +S G++ G PG+
Sbjct: 151 AIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFS 210
Query: 360 ITACLDPDGWKSVFVDNLDFLKE 382
+ GW +V V D +KE
Sbjct: 211 TAIMIFVGGWIAVVVSIHDIVKE 233
>pdb|3R4Q|A Chain A, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|B Chain B, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|C Chain C, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|D Chain D, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
pdb|3R4Q|E Chain E, Crystal Structure Of Lactoylglutathione Lyase From
Agrobacterium Tumefaciens
Length = 160
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 281
P + + L DLD A FY+ FG+E++ K
Sbjct: 6 PSAIMETALYADDLDAAEAFYRDVFGLEMVLK 37
>pdb|1DOW|A Chain A, Crystal Structure Of A Chimera Of Beta-Catenin And Alpha-
Catenin
Length = 205
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 197 IAVEDVAKTVDLVKAKGGKVTREP-GPVKGGNTVIA 231
+AVEDV K DL K+ G+ +P VK GN V A
Sbjct: 36 VAVEDVRKQGDLXKSAAGEFADDPCSSVKRGNXVRA 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,443,116
Number of Sequences: 62578
Number of extensions: 567117
Number of successful extensions: 1414
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 54
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)