Query 016689
Match_columns 384
No_of_seqs 483 out of 2256
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 9E-44 1.9E-48 339.0 35.3 281 96-384 6-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 1.4E-41 3.1E-46 298.8 19.4 259 103-384 6-278 (299)
3 TIGR02295 HpaD 3,4-dihydroxyph 100.0 8.6E-30 1.9E-34 243.5 30.8 234 112-378 2-258 (294)
4 TIGR03211 catechol_2_3 catecho 100.0 9.1E-30 2E-34 244.5 29.6 235 112-375 2-264 (303)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 8E-29 1.7E-33 236.1 30.3 234 113-377 2-264 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 2.6E-19 5.6E-24 175.6 27.2 221 114-350 2-267 (353)
7 PLN02367 lactoylglutathione ly 99.8 1.9E-19 4.1E-24 163.4 17.9 129 111-249 72-225 (233)
8 TIGR00068 glyox_I lactoylgluta 99.8 3.9E-19 8.5E-24 153.2 17.8 138 108-253 11-148 (150)
9 PRK10291 glyoxalase I; Provisi 99.8 8.5E-19 1.8E-23 146.9 16.3 124 119-250 1-124 (129)
10 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.9E-18 4.2E-23 144.2 16.1 115 113-245 1-126 (127)
11 PLN02367 lactoylglutathione ly 99.8 1.7E-18 3.8E-23 157.2 16.8 126 252-379 75-225 (233)
12 COG2514 Predicted ring-cleavag 99.8 2.1E-17 4.5E-22 150.5 22.1 194 110-331 6-242 (265)
13 PLN03042 Lactoylglutathione ly 99.8 5.6E-18 1.2E-22 150.6 17.8 129 110-248 23-176 (185)
14 COG2514 Predicted ring-cleavag 99.8 5.6E-19 1.2E-23 160.7 10.2 158 50-244 66-264 (265)
15 PRK10291 glyoxalase I; Provisi 99.8 6.1E-18 1.3E-22 141.7 15.5 121 257-377 1-121 (129)
16 TIGR00068 glyox_I lactoylgluta 99.8 1.2E-17 2.7E-22 143.8 16.9 134 248-381 13-146 (150)
17 cd07233 Glyoxalase_I Glyoxalas 99.8 3.8E-17 8.2E-22 134.5 16.4 120 115-244 1-121 (121)
18 PLN02300 lactoylglutathione ly 99.8 2.5E-17 5.5E-22 157.0 16.8 129 112-248 152-280 (286)
19 PLN03042 Lactoylglutathione ly 99.8 4.2E-17 9.1E-22 144.9 16.5 125 252-378 27-176 (185)
20 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 1E-16 2.2E-21 136.3 16.2 122 113-246 2-141 (142)
21 cd07233 Glyoxalase_I Glyoxalas 99.7 1.3E-16 2.9E-21 131.2 15.7 120 253-374 1-121 (121)
22 PLN02875 4-hydroxyphenylpyruva 99.7 1.5E-15 3.2E-20 148.8 25.3 222 115-350 1-295 (398)
23 cd08342 HPPD_N_like N-terminal 99.7 1.7E-16 3.6E-21 134.5 15.8 120 253-379 1-126 (136)
24 cd08358 Glo_EDI_BRP_like_21 Th 99.7 1.8E-16 3.9E-21 132.4 15.5 114 252-375 2-126 (127)
25 cd08342 HPPD_N_like N-terminal 99.7 2.8E-16 6.2E-21 133.0 16.5 120 115-249 1-126 (136)
26 cd07243 2_3_CTD_C C-terminal d 99.7 2.5E-16 5.4E-21 134.7 16.2 118 112-246 4-125 (143)
27 TIGR03211 catechol_2_3 catecho 99.7 1.4E-16 2.9E-21 153.1 16.3 156 72-244 101-263 (303)
28 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.7E-16 3.7E-21 151.6 16.0 172 54-246 59-256 (294)
29 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 2.5E-16 5.3E-21 133.9 15.1 121 252-376 3-141 (142)
30 PRK11478 putative lyase; Provi 99.7 3.3E-16 7.2E-21 130.6 15.3 122 112-246 4-129 (129)
31 cd07257 THT_oxygenase_C The C- 99.7 9.2E-17 2E-21 139.0 12.3 119 114-247 1-126 (153)
32 TIGR03645 glyox_marine lactoyl 99.7 3.6E-16 7.8E-21 136.6 15.8 126 113-249 3-154 (162)
33 cd08360 MhqB_like_C C-terminal 99.7 4.8E-16 1E-20 131.3 15.8 118 113-248 2-122 (134)
34 cd07265 2_3_CTD_N N-terminal d 99.7 4.5E-16 9.7E-21 128.8 15.2 116 112-247 2-120 (122)
35 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 3.6E-16 7.8E-21 129.1 14.2 119 114-244 1-125 (125)
36 TIGR03213 23dbph12diox 2,3-dih 99.7 8.9E-16 1.9E-20 146.3 17.0 156 72-246 101-263 (286)
37 PRK11478 putative lyase; Provi 99.7 1.1E-15 2.3E-20 127.6 15.2 121 251-376 5-129 (129)
38 cd07257 THT_oxygenase_C The C- 99.7 4.3E-16 9.4E-21 134.8 13.0 121 252-379 1-128 (153)
39 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 1.1E-15 2.3E-20 126.3 14.8 119 252-374 1-125 (125)
40 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 1.6E-15 3.5E-20 124.9 15.2 120 113-245 2-125 (125)
41 cd07243 2_3_CTD_C C-terminal d 99.7 1.8E-15 3.9E-20 129.5 15.9 118 250-376 4-125 (143)
42 PRK04101 fosfomycin resistance 99.7 1.7E-15 3.6E-20 128.8 15.6 118 111-247 1-120 (139)
43 cd08360 MhqB_like_C C-terminal 99.7 1.7E-15 3.7E-20 127.9 15.5 120 250-379 1-123 (134)
44 cd07237 BphC1-RGP6_C_like C-te 99.7 1.8E-15 3.8E-20 131.1 15.4 122 110-247 5-132 (154)
45 TIGR03081 metmalonyl_epim meth 99.7 9.5E-16 2.1E-20 127.3 13.1 119 114-245 1-128 (128)
46 TIGR03645 glyox_marine lactoyl 99.7 1.9E-15 4E-20 132.1 15.4 126 250-378 2-153 (162)
47 cd07256 HPCD_C_class_II C-term 99.7 3.3E-15 7.2E-20 130.4 16.1 118 113-247 2-124 (161)
48 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.9E-15 6.3E-20 123.4 14.9 119 252-375 3-125 (125)
49 cd07247 SgaA_N_like N-terminal 99.6 7E-15 1.5E-19 119.9 15.2 114 253-375 1-114 (114)
50 TIGR03081 metmalonyl_epim meth 99.6 3.9E-15 8.4E-20 123.7 13.9 119 252-375 1-128 (128)
51 cd07265 2_3_CTD_N N-terminal d 99.6 4.7E-15 1E-19 122.7 14.2 116 251-378 3-121 (122)
52 cd07258 PpCmtC_C C-terminal do 99.6 4.5E-15 9.7E-20 126.7 14.4 113 116-248 1-116 (141)
53 PF00903 Glyoxalase: Glyoxalas 99.6 1.4E-15 3E-20 125.5 10.7 120 114-243 1-128 (128)
54 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 6.7E-15 1.4E-19 121.2 14.7 117 113-245 2-124 (125)
55 cd09013 BphC-JF8_N_like N-term 99.6 6.4E-15 1.4E-19 121.8 14.5 113 112-247 4-119 (121)
56 cd07266 HPCD_N_class_II N-term 99.6 4.6E-15 1E-19 122.4 13.5 114 112-246 2-118 (121)
57 cd07252 BphC1-RGP6_N_like N-te 99.6 7.8E-15 1.7E-19 121.3 14.7 112 114-247 2-118 (120)
58 cd07258 PpCmtC_C C-terminal do 99.6 8E-15 1.7E-19 125.1 15.0 117 254-382 1-120 (141)
59 cd07263 Glo_EDI_BRP_like_16 Th 99.6 6.7E-15 1.5E-19 120.0 13.8 117 255-375 1-119 (119)
60 cd08343 ED_TypeI_classII_C C-t 99.6 1.1E-14 2.5E-19 122.2 15.5 116 116-248 1-119 (131)
61 cd07247 SgaA_N_like N-terminal 99.6 1.1E-14 2.4E-19 118.7 15.0 114 115-245 1-114 (114)
62 cd07237 BphC1-RGP6_C_like C-te 99.6 1E-14 2.3E-19 126.2 15.2 122 249-378 6-133 (154)
63 cd07255 Glo_EDI_BRP_like_12 Th 99.6 2.1E-14 4.5E-19 118.9 16.2 118 113-249 1-122 (125)
64 cd07263 Glo_EDI_BRP_like_16 Th 99.6 1.1E-14 2.3E-19 118.7 14.1 117 117-245 1-119 (119)
65 cd07239 BphC5-RK37_C_like C-te 99.6 1.3E-14 2.8E-19 124.2 15.0 114 113-248 3-119 (144)
66 cd08347 PcpA_C_like C-terminal 99.6 1.6E-14 3.4E-19 125.6 15.5 118 114-248 1-122 (157)
67 cd08351 ChaP_like ChaP, an enz 99.6 1.7E-14 3.6E-19 119.8 14.9 113 111-246 1-121 (123)
68 cd08346 PcpA_N_like N-terminal 99.6 1.4E-14 3E-19 119.6 14.4 120 114-244 1-126 (126)
69 cd07256 HPCD_C_class_II C-term 99.6 1.9E-14 4.2E-19 125.5 15.9 120 250-378 1-125 (161)
70 cd09014 BphC-JF8_C_like C-term 99.6 2.4E-14 5.2E-19 125.6 16.5 122 112-247 4-128 (166)
71 cd08361 PpCmtC_N N-terminal do 99.6 1.7E-14 3.6E-19 120.2 14.5 112 112-247 4-120 (124)
72 cd08364 FosX FosX, a fosfomyci 99.6 2E-14 4.2E-19 121.0 14.9 120 111-247 1-123 (131)
73 cd08343 ED_TypeI_classII_C C-t 99.6 3.2E-14 7E-19 119.5 16.1 116 254-378 1-119 (131)
74 cd07249 MMCE Methylmalonyl-CoA 99.6 1.5E-14 3.2E-19 119.9 13.7 119 115-245 1-128 (128)
75 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 1E-14 2.2E-19 117.5 12.1 113 115-243 1-114 (114)
76 PRK04101 fosfomycin resistance 99.6 2.2E-14 4.7E-19 121.9 14.5 116 251-377 3-120 (139)
77 cd07240 ED_TypeI_classII_N N-t 99.6 3.2E-14 6.9E-19 116.2 14.8 111 113-246 1-114 (117)
78 cd08355 Glo_EDI_BRP_like_14 Th 99.6 5.4E-14 1.2E-18 116.2 16.2 115 256-375 3-121 (122)
79 cd08363 FosB FosB, a fosfomyci 99.6 1.8E-14 3.9E-19 121.2 13.2 114 115-247 1-116 (131)
80 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 3.5E-14 7.6E-19 116.8 14.7 116 252-375 3-124 (125)
81 cd08348 BphC2-C3-RGP6_C_like T 99.6 6.6E-14 1.4E-18 117.6 16.4 120 114-249 1-123 (134)
82 PRK06724 hypothetical protein; 99.6 3.8E-14 8.3E-19 118.9 14.5 112 111-246 4-123 (128)
83 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 6.1E-14 1.3E-18 116.7 15.4 117 114-246 1-128 (128)
84 PF00903 Glyoxalase: Glyoxalas 99.6 5.5E-15 1.2E-19 121.9 9.0 120 252-373 1-128 (128)
85 cd09011 Glo_EDI_BRP_like_23 Th 99.6 3.1E-14 6.7E-19 117.5 13.3 114 113-246 1-119 (120)
86 cd08346 PcpA_N_like N-terminal 99.6 3.9E-14 8.4E-19 116.9 13.9 120 252-374 1-126 (126)
87 cd09011 Glo_EDI_BRP_like_23 Th 99.6 4.3E-14 9.3E-19 116.6 13.5 113 252-376 2-119 (120)
88 cd07264 Glo_EDI_BRP_like_15 Th 99.6 7.4E-14 1.6E-18 115.5 14.9 115 253-376 1-125 (125)
89 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 3.6E-14 7.9E-19 114.3 12.6 113 253-373 1-114 (114)
90 cd08347 PcpA_C_like C-terminal 99.6 7.3E-14 1.6E-18 121.4 15.2 117 252-377 1-121 (157)
91 cd08363 FosB FosB, a fosfomyci 99.6 4.4E-14 9.6E-19 118.9 13.4 114 253-377 1-116 (131)
92 cd07249 MMCE Methylmalonyl-CoA 99.6 6.9E-14 1.5E-18 115.8 14.0 118 253-375 1-128 (128)
93 cd08355 Glo_EDI_BRP_like_14 Th 99.6 2.3E-13 5E-18 112.4 17.0 115 118-245 3-121 (122)
94 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.9E-13 4.1E-18 112.3 16.3 115 256-375 5-121 (122)
95 cd08362 BphC5-RrK37_N_like N-t 99.6 8.9E-14 1.9E-18 114.3 14.1 113 113-247 2-118 (120)
96 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 1.8E-13 3.9E-18 113.9 15.9 117 252-376 1-128 (128)
97 PRK06724 hypothetical protein; 99.6 8.9E-14 1.9E-18 116.7 14.1 112 251-378 6-125 (128)
98 cd07239 BphC5-RK37_C_like C-te 99.6 1.2E-13 2.5E-18 118.4 15.0 114 251-378 3-119 (144)
99 cd07267 THT_Oxygenase_N N-term 99.6 1.6E-13 3.4E-18 112.2 15.1 109 113-246 2-110 (113)
100 KOG0638 4-hydroxyphenylpyruvat 99.6 1.3E-14 2.8E-19 133.7 9.3 253 113-377 16-338 (381)
101 cd09014 BphC-JF8_C_like C-term 99.6 1.4E-13 3.1E-18 120.6 15.7 120 251-376 5-127 (166)
102 cd09013 BphC-JF8_N_like N-term 99.6 9.2E-14 2E-18 114.8 13.4 112 251-377 5-119 (121)
103 cd07246 Glo_EDI_BRP_like_8 Thi 99.5 3.7E-13 8E-18 110.6 16.5 116 118-246 5-122 (122)
104 cd08351 ChaP_like ChaP, an enz 99.5 1.5E-13 3.2E-18 114.0 14.2 111 252-377 4-122 (123)
105 cd07266 HPCD_N_class_II N-term 99.5 1.2E-13 2.6E-18 113.9 13.1 114 251-378 3-120 (121)
106 KOG2944 Glyoxalase [Carbohydra 99.5 1.7E-14 3.8E-19 120.5 7.9 124 113-246 21-168 (170)
107 cd08364 FosX FosX, a fosfomyci 99.5 2.2E-13 4.8E-18 114.6 14.9 116 252-377 4-123 (131)
108 cd08359 Glo_EDI_BRP_like_22 Th 99.5 2.6E-13 5.6E-18 111.4 14.7 112 255-375 4-119 (119)
109 cd07252 BphC1-RGP6_N_like N-te 99.5 1.8E-13 3.9E-18 113.1 13.6 112 252-377 2-118 (120)
110 cd07264 Glo_EDI_BRP_like_15 Th 99.5 3E-13 6.5E-18 111.8 14.9 115 115-246 1-125 (125)
111 cd08359 Glo_EDI_BRP_like_22 Th 99.5 2.8E-13 6.1E-18 111.2 14.6 111 117-245 4-119 (119)
112 cd08361 PpCmtC_N N-terminal do 99.5 1.5E-13 3.3E-18 114.4 13.1 110 251-377 5-120 (124)
113 cd08348 BphC2-C3-RGP6_C_like T 99.5 4.3E-13 9.2E-18 112.7 15.3 119 252-378 1-122 (134)
114 cd07244 FosA FosA, a Fosfomyci 99.5 2E-13 4.4E-18 112.9 13.1 109 114-247 1-111 (121)
115 cd08354 Glo_EDI_BRP_like_13 Th 99.5 3.3E-13 7.2E-18 111.0 14.1 113 115-245 1-121 (122)
116 cd07255 Glo_EDI_BRP_like_12 Th 99.5 3.9E-13 8.4E-18 111.3 14.6 116 252-378 2-121 (125)
117 cd08345 Fosfomycin_RP Fosfomyc 99.5 2.1E-13 4.5E-18 110.8 12.4 109 117-246 1-111 (113)
118 cd08349 BLMA_like Bleomycin bi 99.5 4.6E-13 1E-17 108.3 14.2 109 257-375 3-112 (112)
119 cd09012 Glo_EDI_BRP_like_24 Th 99.5 3.1E-13 6.7E-18 112.2 13.1 113 253-375 1-123 (124)
120 cd07262 Glo_EDI_BRP_like_19 Th 99.5 4.6E-13 1E-17 110.7 14.1 114 115-244 1-122 (123)
121 cd08354 Glo_EDI_BRP_like_13 Th 99.5 4.1E-13 8.8E-18 110.4 13.7 114 253-376 1-122 (122)
122 COG3324 Predicted enzyme relat 99.5 6.2E-13 1.3E-17 109.6 14.5 120 250-377 7-126 (127)
123 cd07240 ED_TypeI_classII_N N-t 99.5 4.9E-13 1.1E-17 109.1 13.9 111 252-377 2-115 (117)
124 cd07261 Glo_EDI_BRP_like_11 Th 99.5 5.5E-13 1.2E-17 108.7 14.1 108 256-374 2-113 (114)
125 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 7E-13 1.5E-17 107.8 14.5 110 117-247 3-112 (112)
126 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 8.4E-13 1.8E-17 107.3 14.6 108 256-376 4-111 (112)
127 PF12681 Glyoxalase_2: Glyoxal 99.5 5.3E-13 1.1E-17 107.4 13.2 108 120-244 1-108 (108)
128 cd08345 Fosfomycin_RP Fosfomyc 99.5 4.5E-13 9.9E-18 108.8 12.8 108 255-375 1-110 (113)
129 cd08362 BphC5-RrK37_N_like N-t 99.5 5E-13 1.1E-17 109.8 13.2 112 251-377 2-118 (120)
130 cd08349 BLMA_like Bleomycin bi 99.5 9.4E-13 2E-17 106.5 14.5 109 119-245 3-112 (112)
131 cd08357 Glo_EDI_BRP_like_18 Th 99.5 5.7E-13 1.2E-17 110.1 13.0 113 117-245 2-124 (125)
132 cd08350 BLMT_like BLMT, a bleo 99.5 6.5E-13 1.4E-17 109.6 13.3 108 255-376 5-119 (120)
133 cd07262 Glo_EDI_BRP_like_19 Th 99.5 1E-12 2.2E-17 108.6 14.4 114 253-374 1-122 (123)
134 cd08344 MhqB_like_N N-terminal 99.5 8.3E-13 1.8E-17 107.7 13.7 108 113-247 1-110 (112)
135 cd07254 Glo_EDI_BRP_like_20 Th 99.5 1.4E-12 3.1E-17 107.3 15.0 113 254-378 3-119 (120)
136 PF12681 Glyoxalase_2: Glyoxal 99.5 2.5E-13 5.5E-18 109.3 10.2 108 258-374 1-108 (108)
137 cd06587 Glo_EDI_BRP_like This 99.5 1.1E-12 2.5E-17 104.3 13.5 112 117-243 1-112 (112)
138 cd07254 Glo_EDI_BRP_like_20 Th 99.5 1.8E-12 4E-17 106.7 15.1 112 116-247 3-118 (120)
139 cd07235 MRD Mitomycin C resist 99.5 6.5E-13 1.4E-17 109.6 11.9 113 253-374 1-121 (122)
140 cd06587 Glo_EDI_BRP_like This 99.5 1.7E-12 3.6E-17 103.4 13.8 112 255-373 1-112 (112)
141 cd07267 THT_Oxygenase_N N-term 99.5 1.3E-12 2.8E-17 106.7 13.4 108 252-376 3-110 (113)
142 cd07244 FosA FosA, a Fosfomyci 99.5 1.3E-12 2.9E-17 107.9 13.2 109 252-377 1-111 (121)
143 cd09012 Glo_EDI_BRP_like_24 Th 99.4 1.5E-12 3.3E-17 108.0 13.0 113 115-245 1-123 (124)
144 cd08357 Glo_EDI_BRP_like_18 Th 99.4 1.1E-12 2.4E-17 108.3 12.1 113 255-375 2-124 (125)
145 cd08350 BLMT_like BLMT, a bleo 99.4 2.3E-12 5E-17 106.3 13.8 108 117-246 5-119 (120)
146 COG3324 Predicted enzyme relat 99.4 4.6E-12 1E-16 104.5 14.7 122 109-247 4-126 (127)
147 cd07235 MRD Mitomycin C resist 99.4 2.6E-12 5.6E-17 106.0 13.4 113 115-244 1-121 (122)
148 cd07261 Glo_EDI_BRP_like_11 Th 99.4 4.4E-12 9.6E-17 103.3 14.0 108 118-244 2-113 (114)
149 KOG2943 Predicted glyoxalase [ 99.4 8.2E-13 1.8E-17 117.4 9.9 119 249-376 14-143 (299)
150 KOG2944 Glyoxalase [Carbohydra 99.4 9.5E-13 2.1E-17 110.2 8.7 123 252-376 22-168 (170)
151 cd07251 Glo_EDI_BRP_like_10 Th 99.4 7.6E-12 1.6E-16 102.6 13.9 111 256-376 2-121 (121)
152 cd08344 MhqB_like_N N-terminal 99.4 8.2E-12 1.8E-16 101.7 13.5 106 252-376 2-109 (112)
153 PF13669 Glyoxalase_4: Glyoxal 99.4 5.6E-12 1.2E-16 102.6 11.5 95 116-220 1-97 (109)
154 cd08356 Glo_EDI_BRP_like_17 Th 99.4 1.4E-11 3.1E-16 100.7 12.8 104 118-245 5-113 (113)
155 cd08356 Glo_EDI_BRP_like_17 Th 99.4 1.4E-11 3.1E-16 100.7 12.8 104 256-375 5-113 (113)
156 cd07251 Glo_EDI_BRP_like_10 Th 99.3 3.6E-11 7.8E-16 98.5 13.5 110 118-245 2-120 (121)
157 PF13669 Glyoxalase_4: Glyoxal 99.3 1.9E-11 4.2E-16 99.3 9.4 95 254-350 1-97 (109)
158 COG3185 4-hydroxyphenylpyruvat 99.3 5.5E-10 1.2E-14 105.4 18.9 219 112-351 20-275 (363)
159 cd07250 HPPD_C_like C-terminal 99.1 1.3E-09 2.8E-14 97.8 11.5 99 113-221 2-113 (191)
160 cd07250 HPPD_C_like C-terminal 99.1 1.2E-09 2.7E-14 97.9 11.0 98 252-351 3-113 (191)
161 COG3565 Predicted dioxygenase 99.0 3.7E-09 8.1E-14 83.9 10.7 119 113-247 3-130 (138)
162 COG3607 Predicted lactoylgluta 99.0 7.5E-09 1.6E-13 83.6 10.4 115 252-375 3-126 (133)
163 cd06588 PhnB_like Escherichia 98.9 4.2E-08 9E-13 82.0 14.4 110 257-373 4-127 (128)
164 COG0346 GloA Lactoylglutathion 98.9 9.1E-09 2E-13 84.2 7.9 122 113-245 1-138 (138)
165 COG2764 PhnB Uncharacterized p 98.8 1.6E-07 3.4E-12 78.9 14.9 116 257-377 5-132 (136)
166 PF13468 Glyoxalase_3: Glyoxal 98.8 5.4E-08 1.2E-12 86.0 12.5 147 115-274 1-175 (175)
167 cd06588 PhnB_like Escherichia 98.8 1.9E-07 4.2E-12 78.0 14.7 111 118-243 3-127 (128)
168 COG0346 GloA Lactoylglutathion 98.8 2.2E-08 4.8E-13 81.8 8.4 121 252-375 2-138 (138)
169 COG3565 Predicted dioxygenase 98.8 7.6E-08 1.6E-12 76.5 10.7 117 253-378 5-131 (138)
170 TIGR01263 4HPPD 4-hydroxypheny 98.7 3.2E-07 7E-12 90.2 15.9 121 252-377 2-128 (353)
171 COG3607 Predicted lactoylgluta 98.7 2E-07 4.4E-12 75.4 10.9 118 113-248 2-129 (133)
172 COG2764 PhnB Uncharacterized p 98.7 9.9E-07 2.1E-11 74.1 15.4 117 119-248 5-133 (136)
173 PLN02875 4-hydroxyphenylpyruva 98.5 7.4E-07 1.6E-11 87.9 10.5 99 112-220 178-295 (398)
174 PRK01037 trmD tRNA (guanine-N( 98.4 1.8E-06 3.9E-11 82.6 11.4 106 251-376 246-354 (357)
175 KOG0638 4-hydroxyphenylpyruvat 98.4 6.1E-07 1.3E-11 83.5 6.0 126 252-379 17-151 (381)
176 PRK01037 trmD tRNA (guanine-N( 98.3 3E-06 6.5E-11 81.1 10.2 106 113-246 246-354 (357)
177 PF14506 CppA_N: CppA N-termin 98.3 2.5E-05 5.3E-10 63.1 13.7 113 116-246 2-114 (125)
178 PRK10148 hypothetical protein; 98.0 0.00038 8.3E-09 59.7 15.2 113 257-377 6-142 (147)
179 PRK10148 hypothetical protein; 97.8 0.0017 3.7E-08 55.7 15.6 117 118-250 5-145 (147)
180 COG3185 4-hydroxyphenylpyruvat 97.7 0.00017 3.6E-09 68.8 8.2 96 113-221 166-275 (363)
181 PF14506 CppA_N: CppA N-termin 97.5 0.0014 3.1E-08 53.1 10.8 113 254-378 2-116 (125)
182 PF14696 Glyoxalase_5: Hydroxy 97.5 0.00091 2E-08 56.5 9.9 116 252-378 9-128 (139)
183 PF13468 Glyoxalase_3: Glyoxal 97.5 0.0003 6.6E-09 61.9 7.1 87 253-345 1-101 (175)
184 PF14696 Glyoxalase_5: Hydroxy 97.2 0.0081 1.8E-07 50.8 11.6 118 113-249 8-129 (139)
185 PF06983 3-dmu-9_3-mt: 3-demet 95.6 0.52 1.1E-05 38.5 13.1 96 123-244 11-116 (116)
186 PF14507 CppA_C: CppA C-termin 95.1 0.046 9.9E-07 43.4 5.1 92 253-373 6-100 (101)
187 PF06983 3-dmu-9_3-mt: 3-demet 95.0 0.66 1.4E-05 37.9 12.0 96 261-374 11-116 (116)
188 PF15067 FAM124: FAM124 family 94.7 0.22 4.9E-06 45.3 9.1 106 251-373 127-235 (236)
189 PF15067 FAM124: FAM124 family 93.6 0.57 1.2E-05 42.7 9.2 103 114-243 128-235 (236)
190 PF14507 CppA_C: CppA C-termin 89.9 0.71 1.5E-05 36.7 4.9 92 114-242 5-99 (101)
191 PRK11700 hypothetical protein; 78.6 28 0.00061 30.8 10.1 78 113-201 38-120 (187)
192 PF06185 YecM: YecM protein; 72.6 33 0.00071 30.5 9.0 88 113-211 33-126 (185)
193 PF13670 PepSY_2: Peptidase pr 71.2 14 0.0003 28.0 5.7 45 201-247 30-74 (83)
194 cd07268 Glo_EDI_BRP_like_4 Thi 70.1 58 0.0013 27.8 9.6 76 115-201 2-82 (149)
195 COG3865 Uncharacterized protei 69.1 71 0.0015 27.1 10.8 100 261-376 14-124 (151)
196 COG4747 ACT domain-containing 61.9 89 0.0019 25.7 11.3 109 202-348 17-135 (142)
197 PF13670 PepSY_2: Peptidase pr 54.2 34 0.00073 25.8 5.1 45 331-377 30-74 (83)
198 cd04882 ACT_Bt0572_2 C-termina 47.8 37 0.0008 23.5 4.2 26 191-216 39-64 (65)
199 TIGR00318 cyaB adenylyl cyclas 47.6 1.8E+02 0.0039 25.2 9.4 80 195-281 6-104 (174)
200 cd04895 ACT_ACR_1 ACT domain-c 42.3 41 0.00089 24.9 3.7 41 332-372 15-56 (72)
201 cd04883 ACT_AcuB C-terminal AC 41.8 54 0.0012 23.4 4.4 28 192-219 42-71 (72)
202 cd04883 ACT_AcuB C-terminal AC 41.8 59 0.0013 23.1 4.6 29 321-349 41-71 (72)
203 cd04882 ACT_Bt0572_2 C-termina 40.7 55 0.0012 22.6 4.2 26 321-346 39-64 (65)
204 PF07063 DUF1338: Domain of un 40.1 55 0.0012 31.5 5.2 30 188-217 181-216 (302)
205 PF02208 Sorb: Sorbin homologo 39.0 16 0.00034 24.4 0.9 25 251-275 10-34 (47)
206 cd04895 ACT_ACR_1 ACT domain-c 35.9 1.5E+02 0.0033 21.9 5.9 40 202-241 15-55 (72)
207 cd04897 ACT_ACR_3 ACT domain-c 28.5 1.8E+02 0.0038 21.8 5.2 41 332-372 15-56 (75)
208 COG4747 ACT domain-containing 28.4 90 0.0019 25.6 3.8 83 192-279 42-134 (142)
209 COG3865 Uncharacterized protei 28.2 3.8E+02 0.0082 22.9 11.9 42 195-247 81-125 (151)
210 COG5397 Uncharacterized conser 24.9 69 0.0015 30.3 2.9 52 324-377 160-212 (349)
211 PRK11700 hypothetical protein; 24.8 4.5E+02 0.0098 23.4 7.8 77 252-330 39-119 (187)
212 PF06185 YecM: YecM protein; 23.9 4.9E+02 0.011 23.1 8.0 77 252-330 34-114 (185)
213 PRK12475 thiamine/molybdopteri 23.6 3E+02 0.0064 26.9 7.3 60 200-275 279-338 (338)
214 COG1437 CyaB Adenylate cyclase 23.2 5.3E+02 0.011 22.8 15.0 135 195-345 6-161 (178)
215 cd04906 ACT_ThrD-I_1 First of 23.1 1.5E+02 0.0032 22.3 4.1 28 191-218 40-71 (85)
216 KOG4657 Uncharacterized conser 21.7 1.8E+02 0.0039 26.7 4.8 35 261-298 145-179 (246)
217 COG5397 Uncharacterized conser 20.1 85 0.0018 29.7 2.5 51 195-247 161-212 (349)
218 PF07494 Reg_prop: Two compone 20.0 1.4E+02 0.0029 16.8 2.5 15 227-241 5-19 (24)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=9e-44 Score=338.99 Aligned_cols=281 Identities=87% Similarity=1.448 Sum_probs=235.6
Q ss_pred cccCCcchhhcccccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEE
Q 016689 96 SNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVV 175 (384)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l 175 (384)
+.+...+.+++|.++++.++.|+.|.|+|+++++ +||+++|||++..+...++..+..+|+..++...++.+
T Consensus 6 ~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~--------~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l 77 (286)
T PLN02300 6 STAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTI--------KFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVV 77 (286)
T ss_pred ccChhhhhhhcCCccccceEEEEEEEeCCHHHHH--------HHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEE
Confidence 3345667899999899999999999999999999 99999999999876655556667788877655556678
Q ss_pred EEEecCCCCCCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCCCCcee
Q 016689 176 ELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQ 255 (384)
Q Consensus 176 el~~~~~~~~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~~h 255 (384)
++..+.+......+.|+.|++|.|+|+++++++|+++|+++..+|...+++..+.+|++|||||.|||+++.+.+.++.|
T Consensus 78 el~~~~~~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~ 157 (286)
T PLN02300 78 ELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQ 157 (286)
T ss_pred EEeccCCCCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCccee
Confidence 88765554444556789999999999999999999999999988877766666788999999999999999999999999
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHH
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 335 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~ 335 (384)
+.|.|+|++++.+||+++|||++......++.++...++..+.......+++..+.+...+..+++.+|++|.|+|++++
T Consensus 158 ~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~ 237 (286)
T PLN02300 158 VMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKT 237 (286)
T ss_pred EEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHH
Confidence 99999999999999999999999765544555576666654333334567776655544455678999999999999999
Q ss_pred HHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCccccccC
Q 016689 336 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKELE 384 (384)
Q Consensus 336 ~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f~~~~~ 384 (384)
+++++++|+++..+|...|+..++.++|+||||+.|+|+++.+|+||||
T Consensus 238 ~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 238 AEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred HHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 9999999999999988888654578999999999999999999999997
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=298.77 Aligned_cols=259 Identities=51% Similarity=0.876 Sum_probs=229.4
Q ss_pred hhhcccccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC-----------CceEEEEEeeCCCCc
Q 016689 103 NVLDWVKSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDS 171 (384)
Q Consensus 103 ~~~~~~~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~ 171 (384)
.++.|.+.+..|+.|+++.|.|.++++ +||+++|||++++..++++ ++|+..++++||+++
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti--------~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEds 77 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTI--------DFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDS 77 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHH--------HHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcc
Confidence 478999999999999999999999999 9999999999999999888 789999999999999
Q ss_pred cEEEEEEecCCCCCCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCCC
Q 016689 172 HFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPE 251 (384)
Q Consensus 172 ~~~lel~~~~~~~~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~ 251 (384)
|+.+||++|+++..|+.|+++.||.|.++|+-..++.++..|.+ +++...++++||||+.|+|+++.+.+.
T Consensus 78 hFViELTYNYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~ 148 (299)
T KOG2943|consen 78 HFVIELTYNYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSD 148 (299)
T ss_pred cEEEEEEeccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCC
Confidence 99999999999999999999999999999999999988887763 234557789999999999999999999
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 331 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD 331 (384)
++..|+|.|.|+++|+.||.++|||++.+. +.+++.++++++++ +..||++++++......+.+...+++..++
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~ 222 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDD 222 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccc
Confidence 999999999999999999999999999864 33467788888866 699999999888777777777777777789
Q ss_pred HHHHHHHHHHCCCeEecCCccC--CCCC-ceEEEEECCCCCeEEEEecCccccccC
Q 016689 332 VYKTAEAIKLSGGKITREPGPL--PGIN-TKITACLDPDGWKSVFVDNLDFLKELE 384 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~--~~~~-~~~~~~~DPdG~~iElve~~~f~~~~~ 384 (384)
+..+.+.++..+.++..+.... |++. .+++-+.||||+.|+|+.+++|+|+++
T Consensus 223 ~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 223 LPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred cccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 9999999999987776665432 4432 367889999999999999999999875
No 3
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.98 E-value=8.6e-30 Score=243.49 Aligned_cols=234 Identities=26% Similarity=0.310 Sum_probs=169.3
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
..+++||.|.|+|+++++ +||+++|||++..+.. ..+++.......++.+.+... ...+
T Consensus 2 i~~i~hv~l~v~Dl~~s~--------~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~ 60 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSR--------EFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAA 60 (294)
T ss_pred CceeeEEEEEeCCHHHHH--------HHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcC
Confidence 568999999999999999 9999999999875421 134454222222334444432 2347
Q ss_pred ceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC---------------CCCCc
Q 016689 192 FGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPL 253 (384)
Q Consensus 192 ~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~---------------~~~~~ 253 (384)
+.|++|.|+ |+++++++|+++|+++...+.. +..+.+||+|||||.|||++... .+.++
T Consensus 61 ~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~---~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i 137 (294)
T TIGR02295 61 LSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDG---GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRL 137 (294)
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCC---CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceee
Confidence 889999997 7889999999999998865432 34578899999999999987331 12368
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC--
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 331 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD-- 331 (384)
+||.|.|+|++++++||+++|||++..+...+.+.....++.... .++.+.+.. ..+++++|+||.|+|
T Consensus 138 ~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~ 208 (294)
T TIGR02295 138 DHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPL 208 (294)
T ss_pred eeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHH
Confidence 999999999999999999999999876543333333334443221 133343322 124688999999988
Q ss_pred -HHHHHHHHHHCCCe--EecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 332 -VYKTAEAIKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 332 -vd~~~~~l~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
++++.++|+++|++ +..+|+.+..+...++|++||+||.||++....
T Consensus 209 ~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 258 (294)
T TIGR02295 209 NIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGDY 258 (294)
T ss_pred HHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEeccc
Confidence 55568999999998 666676544433467999999999999988654
No 4
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.97 E-value=9.1e-30 Score=244.46 Aligned_cols=235 Identities=21% Similarity=0.244 Sum_probs=167.4
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
.++++|+.|.|+|+++++ +||+++|||++..+.. . .+++.......++.+.+... ...|
T Consensus 2 i~~i~Hi~l~V~Dle~s~--------~FY~~~LG~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~~-------~~~g 60 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESL--------KHYTDVLGLEETGRDG---Q---RVYLKAWDEWDHYSVILTEA-------DTAG 60 (303)
T ss_pred cceeeEEEEEeCCHHHHH--------HHHHHhcCCEEeeecC---c---eEEEEeccccccceEeeccC-------CCCc
Confidence 358999999999999999 9999999999875432 1 33444321112334444321 2347
Q ss_pred ceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC-------------------
Q 016689 192 FGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------------------- 249 (384)
Q Consensus 192 ~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~------------------- 249 (384)
+.|++|.|+ |+++++++|+++|+++...+.....+.++.+||+|||||.|||.+....
T Consensus 61 ~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (303)
T TIGR03211 61 LDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRG 140 (303)
T ss_pred eeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCC
Confidence 899999998 7889999999999998876542222345678999999999999985431
Q ss_pred --CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcE-EEEEeecCCCCcceEEEEeccCCCccccCCCceeEEE
Q 016689 250 --PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIA 326 (384)
Q Consensus 250 --~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hia 326 (384)
+.+++||.|.|+|++++++||+++|||++..+...+++.. ...++..+. ..+.+.+... ....++.|+|
T Consensus 141 ~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~g~~~Hia 212 (303)
T TIGR03211 141 VGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVGD------PEPGKLHHVS 212 (303)
T ss_pred cCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceecC------CCCCceEEEE
Confidence 1258999999999999999999999999875543333322 233343221 1222222211 1122388999
Q ss_pred EEcCC---HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 327 IGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 327 f~VdD---vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
|.|+| ++++.++|+++|+++..+|..+....++++||+|||||.||+..
T Consensus 213 f~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 213 FFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred EEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 99986 55578899999999988887655433579999999999999984
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.97 E-value=8e-29 Score=236.09 Aligned_cols=234 Identities=18% Similarity=0.246 Sum_probs=169.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
.++.|++|.|+|+++|+ +||+++|||++....+ + ...|+..+. .++.+.+.... ..++
T Consensus 2 ~~i~~v~l~V~Dl~~s~--------~FY~~~LGl~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~~-------~~~~ 59 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWR--------EFATEVLGMMVASEGE--N---DALYLRLDS--RAHRIAVHPGE-------SDDL 59 (286)
T ss_pred ceeeEEEEEeCCHHHHH--------HHHHhccCcccccCCC--C---ceEEEEcCC--CceEEEEEECC-------cCCe
Confidence 48999999999999999 9999999999754321 1 234555532 23444443321 2367
Q ss_pred eEEEEEECC---HHHHHHHHHHcCCeeeeCCccc--cCCCEEEEEEECCCCCEEEEeecCCC------------------
Q 016689 193 GHFGIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERGPT------------------ 249 (384)
Q Consensus 193 ~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~~~~------------------ 249 (384)
.|++|.|+| +++++++|+++|+++...|... ..+....++|+|||||.+||+.....
T Consensus 60 ~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~ 139 (286)
T TIGR03213 60 AYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTG 139 (286)
T ss_pred eeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccC
Confidence 899999998 8889999999999988765321 22456788999999999999863211
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCC--C-cEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEE
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD--Y-KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIA 326 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hia 326 (384)
+.+++||.|.|+|++++.+||+++|||++..+...+. + .+...++.+++ .++.+.+... ....+++|++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~~------~~~~~~~Hia 211 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFAAG------PSEKRLNHLM 211 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEecC------CCCCceEEEE
Confidence 2268999999999999999999999999876532221 1 12344555432 2444444321 1246789999
Q ss_pred EEcCCHHH---HHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 327 IGTDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 327 f~VdDvd~---~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|.|+|+++ +.++|+++|+ ....|+.++.+..+++|++||+|+.||+....
T Consensus 212 f~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 212 LEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred EEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 99988666 7999999999 56666665544468899999999999998743
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.86 E-value=2.6e-19 Score=175.56 Aligned_cols=221 Identities=23% Similarity=0.369 Sum_probs=149.8
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC------Cc
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YD 187 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~ 187 (384)
+++|+.+.|+|+++++ +||++.|||+.........+. ..+.+..| ...+++........ ..
T Consensus 2 ~i~hi~~~V~D~~~a~--------~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~ 68 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAA--------YYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAK 68 (353)
T ss_pred ceEEEEEEeCCHHHHH--------HHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHh
Confidence 6899999999999999 999999999987663222222 22223332 34566654322211 13
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC-------------------
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP------------------- 248 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~------------------- 248 (384)
.|.|..|++|.|+|+++++++++++|+++..+|.....|.....-+..+.|..+-|+++..
T Consensus 69 hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 148 (353)
T TIGR01263 69 HGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALH 148 (353)
T ss_pred CCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccc
Confidence 5789999999999999999999999999987765431122222223334444444443210
Q ss_pred --CC----CCceeeeeecC--ChHHHHHHHHHhhCCeEeeeecCCC--CcE-EEEEeecCCCCcceEEEEeccCCC---c
Q 016689 249 --TP----EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKY-TIAVMGYGPEDKNAVLELTYNHGV---T 314 (384)
Q Consensus 249 --~~----~~~~hV~L~V~--Dle~s~~FY~~vLG~~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~lel~~~~~~---~ 314 (384)
.+ ..++||++.|. |++++++||+++|||++..+.+... ... ..++.. . .....+++..+... .
T Consensus 149 ~~~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~-~--~g~~~i~L~ep~~~~~~s 225 (353)
T TIGR01263 149 EPPPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS-P--DGKVKIPLNEPASGKDKS 225 (353)
T ss_pred cCCCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC-C--CCcEEEEEeccCCCCCCC
Confidence 01 14999999999 9999999999999999876654322 122 222222 1 22466777764211 1
Q ss_pred ------cccCCCceeEEEEEcCCHHHHHHHHHHCCCeEecCC
Q 016689 315 ------EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREP 350 (384)
Q Consensus 315 ------~~~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p 350 (384)
....+.|++||||.|+|+++++++|+++|+++..+|
T Consensus 226 ~i~~fl~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 226 QIEEFLEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHHHHHHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 123478999999999999999999999999998877
No 7
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=1.9e-19 Score=163.42 Aligned_cols=129 Identities=36% Similarity=0.667 Sum_probs=106.8
Q ss_pred ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCC---------------ccEEE
Q 016689 111 DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFVV 175 (384)
Q Consensus 111 ~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l 175 (384)
....+.|+.|+|+|+++++ +||+++|||++..+.+.++.++..+|+++++.. ....+
T Consensus 72 ~~~~~~HtmlRVkDle~Sl--------~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~L 143 (233)
T PLN02367 72 KGYIMQQTMYRIKDPKASL--------DFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATI 143 (233)
T ss_pred CCcEEEEEEEEeCCHHHHH--------HHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEE
Confidence 3468999999999999999 999999999999999999888999999764311 13589
Q ss_pred EEEecCCCCC------CcCC----CCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 176 ELTYNYGVDK------YDIG----TGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 176 el~~~~~~~~------~~~g----~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
||+++.+.+. +..+ .|+.|+||.|+|+++++++|+++|+++..+|... ...+.+|++|||||+|||+|
T Consensus 144 ELt~n~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g--~~~riaFIkDPDGn~IEL~e 221 (233)
T PLN02367 144 ELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDG--KMKGIAFIKDPDGYWIEIFD 221 (233)
T ss_pred EEecCCCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccC--CceEEEEEECCCCCEEEEEe
Confidence 9998776442 4433 4899999999999999999999999999877543 23567899999999999999
Q ss_pred cCCC
Q 016689 246 RGPT 249 (384)
Q Consensus 246 ~~~~ 249 (384)
....
T Consensus 222 ~~~~ 225 (233)
T PLN02367 222 LKTI 225 (233)
T ss_pred cccc
Confidence 7653
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=3.9e-19 Score=153.17 Aligned_cols=138 Identities=63% Similarity=1.077 Sum_probs=108.1
Q ss_pred cccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCc
Q 016689 108 VKSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 108 ~~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~ 187 (384)
.++.++++.||.|.|.|+++++ +||+++|||++..+.+.++.++..++++.+....+..+++..+....+..
T Consensus 11 ~~~~~~~i~hv~l~v~Dl~~a~--------~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (150)
T TIGR00068 11 PKTKKRRLLHTMLRVGDLDKSL--------DFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYD 82 (150)
T ss_pred cccCCceEEEEEEEecCHHHHH--------HHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCccc
Confidence 4556789999999999999999 99999999998766555555556677765443334556665544333334
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCCCCc
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPL 253 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~ 253 (384)
.+.++.|++|.|+|+++++++|+++|+++..+|...+++..+.+|++||||++|||++..+...++
T Consensus 83 ~~~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 148 (150)
T TIGR00068 83 LGNGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGL 148 (150)
T ss_pred CCCceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhc
Confidence 456899999999999999999999999998877666666677889999999999999987654443
No 9
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=8.5e-19 Score=146.94 Aligned_cols=124 Identities=56% Similarity=1.057 Sum_probs=99.6
Q ss_pred EEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEEEE
Q 016689 119 VYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 198 (384)
Q Consensus 119 ~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~~~ 198 (384)
.|.|.|+++|+ +||+++|||++..+...++..+..+|++.++......++++.+.+..+...+.++.|++|.
T Consensus 1 ~l~V~Dle~s~--------~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~ 72 (129)
T PRK10291 1 MLRVGDLQRSI--------DFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALS 72 (129)
T ss_pred CEEecCHHHHH--------HHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEE
Confidence 37899999999 9999999999877665565567788887665444556777755444444556789999999
Q ss_pred ECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCC
Q 016689 199 VEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 250 (384)
Q Consensus 199 v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 250 (384)
|+|+++++++|+++|+++..++.+..++..+.+|++|||||+|||++....+
T Consensus 73 V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~ 124 (129)
T PRK10291 73 VDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAG 124 (129)
T ss_pred eCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccccc
Confidence 9999999999999999998776666556667888999999999999987543
No 10
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=1.9e-18 Score=144.21 Aligned_cols=115 Identities=45% Similarity=0.896 Sum_probs=92.1
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC-----------CceEEEEEeeCCCCccEEEEEEecC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNY 181 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~ 181 (384)
+++.|+.|+|+|+++|+ +||+++|||++.++.+.++ +.+..++++++++..+..+||++++
T Consensus 1 ~~~~Hv~irV~DlerSi--------~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~ 72 (127)
T cd08358 1 RRALHFVFKVGNRNKTI--------KFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNY 72 (127)
T ss_pred CceEEEEEEeCCHHHHH--------HHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecC
Confidence 47899999999999999 9999999999988776665 4455677776555557799999988
Q ss_pred CCCCCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 182 GVDKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 182 ~~~~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
+..+++.|.+ |++|.|++. ++.++|+++|+++...|. + ++|++||||+.|||+.
T Consensus 73 ~~~~~~~g~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 73 GIGDYELGND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CCCCCCCCCC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 7666666666 566666666 456999999999987654 1 7899999999999974
No 11
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=1.7e-18 Score=157.17 Aligned_cols=126 Identities=33% Similarity=0.573 Sum_probs=104.5
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCC---------------cceEEEEeccCCCcc-
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVTE- 315 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~lel~~~~~~~~- 315 (384)
.+.|++|+|.|+++|++||+++|||++..+.+.++.++.++++++++.. ....|||.++++...
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 5999999999999999999999999999988888888999998653311 145899998776542
Q ss_pred -----ccCC----CceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCcc
Q 016689 316 -----YDKG----NGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 379 (384)
Q Consensus 316 -----~~~g----~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f 379 (384)
+..+ .|+.||+|.|+|+++++++++++|+++..+|...++ .+++|++|||||+|||+|....
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEecccc
Confidence 3333 489999999999999999999999999987764333 4789999999999999997643
No 12
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.79 E-value=2.1e-17 Score=150.49 Aligned_cols=194 Identities=24% Similarity=0.360 Sum_probs=138.4
Q ss_pred cccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC-CCCcC
Q 016689 110 SDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDI 188 (384)
Q Consensus 110 ~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~ 188 (384)
+..+.+.-++|.|+|++++. .||+++||+++..+.+ ..+-++.+ + ...+.|.+.... .....
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~--------~FY~~ilGL~v~~~~~------~~v~L~vg--g-~~LL~L~q~~~a~~~~~~ 68 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMT--------SFYQEILGLQVLEETD------GSVTLGVG--G-TPLLTLEQFPDARRPPPR 68 (265)
T ss_pred CCCcEEEEEEEEeccHHHHH--------HHHHHhhCCeeeeccC------ceEEEeeC--C-EEEEEEEeCCCCCCCCcc
Confidence 44568999999999999999 9999999999986643 24556654 2 246666554332 22235
Q ss_pred CCCceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC----------------
Q 016689 189 GTGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------- 249 (384)
Q Consensus 189 g~g~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~---------------- 249 (384)
..|+.|++|.+++ +.++..++.+.|..+. ...++ .....+|+.||+||-||++..+|.
T Consensus 69 ~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~-Ga~DH--~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ 145 (265)
T COG2514 69 AAGLYHTAFLLPTREDLARVLNHLAEEGIPLV-GASDH--LVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEP 145 (265)
T ss_pred ccceeeeeeecCCHHHHHHHHHHHHhcCCccc-ccCcc--hhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccc
Confidence 5799999999995 7778899999998886 22232 345688999999999999988642
Q ss_pred --------------------CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEec
Q 016689 250 --------------------PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY 309 (384)
Q Consensus 250 --------------------~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~ 309 (384)
...|.||.|.|.|++++.+||+++|||++..+ .+ ...|+..+ +.++.+....
T Consensus 146 ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~--~~----~A~F~a~G--~YHHHia~N~ 217 (265)
T COG2514 146 LDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR--GP----SALFLASG--DYHHHLAANT 217 (265)
T ss_pred cCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec--CC----cceEEecC--CcceeEEEec
Confidence 01489999999999999999999999999765 22 22455554 3466665543
Q ss_pred -cCCCccc--cCCCceeEEEEEcCC
Q 016689 310 -NHGVTEY--DKGNGYAQIAIGTDD 331 (384)
Q Consensus 310 -~~~~~~~--~~g~g~~hiaf~VdD 331 (384)
+...... ....|+..+.+.+++
T Consensus 218 W~s~~~~~~~~~~~GLa~~~i~~~~ 242 (265)
T COG2514 218 WNSRGARPRNANASGLAWLEIHTPD 242 (265)
T ss_pred cccCCCCCCCCCCCCcceEEEEcCC
Confidence 2111111 223577777777766
No 13
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.79 E-value=5.6e-18 Score=150.56 Aligned_cols=129 Identities=35% Similarity=0.671 Sum_probs=102.3
Q ss_pred cccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCC---------------ccEE
Q 016689 110 SDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPED---------------SHFV 174 (384)
Q Consensus 110 ~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~ 174 (384)
+...++.|+.|+|.|+++|+ +||+++|||++..+...++..+..+|++++... ....
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si--------~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASL--------DFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKAT 94 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHH--------HHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCE
Confidence 34578999999999999999 999999999998887777777888898753211 1347
Q ss_pred EEEEecCCCCC------Cc----CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 175 VELTYNYGVDK------YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 175 lel~~~~~~~~------~~----~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
+||+.+.+... +. .+.|+.|++|.|+|+++++++|+++|+++...|.. +...+++|++||||++|||+
T Consensus 95 lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~--~~~~~~~fi~DPdG~~IEl~ 172 (185)
T PLN03042 95 IELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDD--GKMKGLAFIKDPDGYWIEIF 172 (185)
T ss_pred EEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCcc--CCceeEEEEECCCCCEEEEE
Confidence 89987654321 22 22489999999999999999999999999876643 22356788999999999999
Q ss_pred ecCC
Q 016689 245 ERGP 248 (384)
Q Consensus 245 ~~~~ 248 (384)
+...
T Consensus 173 e~~~ 176 (185)
T PLN03042 173 DLKR 176 (185)
T ss_pred ECCC
Confidence 9764
No 14
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.78 E-value=5.6e-19 Score=160.67 Aligned_cols=158 Identities=23% Similarity=0.354 Sum_probs=120.3
Q ss_pred Ccchhhhhhhcccccccccc---------------cch------hhhhhcccCCceeecc----------CCCcccCccc
Q 016689 50 TSRRLALFQLGAAIPQSHFF---------------GAK------ALKLLRAEGSTIEAST----------SGNMAPTSNT 98 (384)
Q Consensus 50 ~~~~~~~~~~~~~~p~~~~~---------------g~~------~~~l~~~~g~~~~~~~----------~~~~~~~~~~ 98 (384)
+.+..||||+|+++|+|++| |++ |+||.||+||+||+|. ++.+.|.+.+
T Consensus 66 ~~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ 145 (265)
T COG2514 66 PPRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGASDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEP 145 (265)
T ss_pred CccccceeeeeeecCCHHHHHHHHHHHHhcCCcccccCcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccc
Confidence 36789999999999999998 444 9999999999999994 4678888889
Q ss_pred CCcchhhccccc-------ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCc
Q 016689 99 VTEQNVLDWVKS-------DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDS 171 (384)
Q Consensus 99 ~~~~~~~~~~~~-------~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~ 171 (384)
+|++.++..+.. ....|+||+|.|.|++++. +||+++|||++..+ .+ +..|++.| ++
T Consensus 146 ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~--------~fY~~~LG~~~~~~--~~----~A~F~a~G--~Y 209 (265)
T COG2514 146 LDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAE--------QFYEDVLGLEVTAR--GP----SALFLASG--DY 209 (265)
T ss_pred cCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHH--------HHHHHhcCCeeeec--CC----cceEEecC--Cc
Confidence 999998877662 2357999999999999999 99999999999765 22 47889877 45
Q ss_pred cEEEEE-EecCCC--CCCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 172 HFVVEL-TYNYGV--DKYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 172 ~~~lel-~~~~~~--~~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
|+++.. +|+... .+.....|+..+.+.+++-........ ..+||.|+.|.++
T Consensus 210 HHHia~N~W~s~~~~~~~~~~~GLa~~~i~~~~~~~l~~~~~---------------------~~~Dp~G~~i~~~ 264 (265)
T COG2514 210 HHHLAANTWNSRGARPRNANASGLAWLEIHTPDPEKLDATGT---------------------RLTDPWGIVIRVV 264 (265)
T ss_pred ceeEEEeccccCCCCCCCCCCCCcceEEEEcCCccccccccc---------------------ceecCCCceEEEe
Confidence 556555 564332 222345689889998887443221100 0289999999874
No 15
>PRK10291 glyoxalase I; Provisional
Probab=99.78 E-value=6.1e-18 Score=141.72 Aligned_cols=121 Identities=49% Similarity=0.930 Sum_probs=94.7
Q ss_pred eeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHHH
Q 016689 257 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTA 336 (384)
Q Consensus 257 ~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~~ 336 (384)
+|.|.|+++|++||+++|||++..+...++..+.+.++..++......+++..+.+...+..+.+..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987665555556677777654433345667765444334445568899999999999999
Q ss_pred HHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 337 EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 337 ~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
++|+++|+++..++.+.+++..+.+||+|||||.|||++..
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 99999999998777666554346788999999999999966
No 16
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.78 E-value=1.2e-17 Score=143.81 Aligned_cols=134 Identities=47% Similarity=0.846 Sum_probs=101.2
Q ss_pred CCCCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEE
Q 016689 248 PTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 248 ~~~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf 327 (384)
....+++||.|.|.|++++++||+++|||++..+...++..+.+.+++.+.......+++..+.+..+...+.+..|++|
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f 92 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAI 92 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEE
Confidence 34568999999999999999999999999987655444444555566543332345566654333323334568899999
Q ss_pred EcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCcccc
Q 016689 328 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLK 381 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f~~ 381 (384)
.|+|+++++++++++|+++..+|...+++..+.+||+|||||.|||++...-.|
T Consensus 93 ~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~ 146 (150)
T TIGR00068 93 GVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKD 146 (150)
T ss_pred ecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhh
Confidence 999999999999999999988876656554578899999999999999775433
No 17
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.76 E-value=3.8e-17 Score=134.46 Aligned_cols=120 Identities=53% Similarity=0.924 Sum_probs=93.6
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC-CCCcCCCCce
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTGFG 193 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~ 193 (384)
|.|++|.|+|+++++ +||+++|||++......+++.+..+++.......+..+++....+. .....+.+..
T Consensus 1 ~~hv~i~v~d~~~a~--------~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 72 (121)
T cd07233 1 FLHTMLRVKDLEKSL--------DFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFG 72 (121)
T ss_pred CeeEEEEecCcHHHH--------HHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeE
Confidence 579999999999999 9999999999877655444456677887542113456666654332 2334456889
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 194 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 194 hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
|++|.++|+++++++++++|+++..+|... ++.+.+|++|||||+|||+
T Consensus 73 ~i~~~v~did~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 73 HLAFAVDDVYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 999999999999999999999999887655 4567889999999999985
No 18
>PLN02300 lactoylglutathione lyase
Probab=99.75 E-value=2.5e-17 Score=157.02 Aligned_cols=129 Identities=50% Similarity=0.874 Sum_probs=104.5
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
..++.|+.|.|+|++++. +||+++|||++......++..|..+++.+++......+++..+.+..++..+++
T Consensus 152 ~~~~~~~~l~~~d~~~a~--------~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~ 223 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSI--------KFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNA 223 (286)
T ss_pred CCcceeEEEEeCCHHHHH--------HHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCc
Confidence 357899999999999999 999999999997655555556777887654333334567666555444556789
Q ss_pred ceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 192 FGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 192 ~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
+.|++|.|+|+++++++++++|+++..+|...++.+++.++++||||+.++|++...
T Consensus 224 ~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~ 280 (286)
T PLN02300 224 YAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNID 280 (286)
T ss_pred eeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccch
Confidence 999999999999999999999999999888777555678889999999999998753
No 19
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.75 E-value=4.2e-17 Score=144.94 Aligned_cols=125 Identities=30% Similarity=0.563 Sum_probs=98.5
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCC---------------cceEEEEeccCCCcc-
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPED---------------KNAVLELTYNHGVTE- 315 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~lel~~~~~~~~- 315 (384)
++.|++|.|.|+++|++||+++|||++..+...++..+.+.+++.+... ....++|.++.+...
T Consensus 27 ~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~~ 106 (185)
T PLN03042 27 IMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTESD 106 (185)
T ss_pred EEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCccc
Confidence 6999999999999999999999999998887766767788887643211 235788887554321
Q ss_pred -----cc----CCCceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 316 -----YD----KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 316 -----~~----~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+. .+.|+.|++|.|+|+++++++|+++|+++...|....+ .+++|++||||+.|||++...
T Consensus 107 p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 107 PEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred ccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCC
Confidence 21 12489999999999999999999999999876653222 467889999999999999653
No 20
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=1e-16 Score=136.32 Aligned_cols=122 Identities=27% Similarity=0.346 Sum_probs=90.7
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC-----------CceEEEEEeeCCCCccEEEEEEecC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE-----------DRYTNAFLGYGPEDSHFVVELTYNY 181 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~ 181 (384)
.+++||+|.|+|+++++ +||++ |||++..+...++ .....+++... .....+||....
T Consensus 2 ~~i~Hi~i~v~Dl~~s~--------~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~ 70 (142)
T cd08353 2 SRMDNVGIVVRDLEAAI--------AFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFH 70 (142)
T ss_pred ceeeeEEEEeCCHHHHH--------HHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEec
Confidence 58999999999999999 99998 9999865543322 12334555421 234577876532
Q ss_pred CCC-------CCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 182 GVD-------KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 182 ~~~-------~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.+. ....+.|+.|+||.|+|+++++++|+++|+++..++.... ++.+.+|++||||+.|||+|.
T Consensus 71 ~~~~~~~~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 71 HPAVIADHRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCcCcCCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 211 1123468999999999999999999999999987654443 467788999999999999984
No 21
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.73 E-value=1.3e-16 Score=131.17 Aligned_cols=120 Identities=41% Similarity=0.760 Sum_probs=91.6
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCC-ccccCCCceeEEEEEcCC
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV-TEYDKGNGYAQIAIGTDD 331 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~-~~~~~g~g~~hiaf~VdD 331 (384)
+.||.|.|+|++++++||+++|||++......++..+.++++..........+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876654444445556666533113456666543322 223344578899999999
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
+++++++++++|+++..+|....+ ++.+||+|||||.||++
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGGM--KGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCCC--ceEEEEECCCCCEEEeC
Confidence 999999999999999988775532 57899999999999985
No 22
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.73 E-value=1.5e-15 Score=148.79 Aligned_cols=222 Identities=23% Similarity=0.310 Sum_probs=154.3
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCC--ceEEEEEeeCCCCccEEEEEEecCCC---------
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV--------- 183 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~--------- 183 (384)
++||.+.|+|..++. .||+..|||+.+.......+ ......+.-| ...+.++....+
T Consensus 1 ~dhvef~v~da~~~~--------~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~ 68 (398)
T PLN02875 1 FHHVEFWCGDATNTA--------RRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDP 68 (398)
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccc
Confidence 589999999999999 99999999998765442111 1222223322 223333322111
Q ss_pred ----------CC------CcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccC----CCEEEEEEECCCCCEEEE
Q 016689 184 ----------DK------YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 184 ----------~~------~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~----g~~~~~~~~DPdG~~iel 243 (384)
.. ...|.|..-++|.|+|++++++++.++|++...+|..... |...+.-+.-+.|..+-|
T Consensus 69 ~~~~~~~~~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~l 148 (398)
T PLN02875 69 ASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRY 148 (398)
T ss_pred cccccccccCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEE
Confidence 00 1356788899999999999999999999998877655422 223455567777888777
Q ss_pred eecCC---------------C-----C---CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCC-----cEEEEEee
Q 016689 244 LERGP---------------T-----P---EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-----KYTIAVMG 295 (384)
Q Consensus 244 ~~~~~---------------~-----~---~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~ 295 (384)
+++.. . + ..++||++.|.+++.++.||+++|||+..+..+.++. +.....+.
T Consensus 149 Vdr~~~~~~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~ 228 (398)
T PLN02875 149 VSYKGFDGAKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLA 228 (398)
T ss_pred EccCCCCCCccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEE
Confidence 77531 0 0 1599999999999999999999999998865543321 23344444
Q ss_pred cCCCCcceEEEEeccCCC---c----c---ccCCCceeEEEEEcCCHHHHHHHHHHC----CCeEecCC
Q 016689 296 YGPEDKNAVLELTYNHGV---T----E---YDKGNGYAQIAIGTDDVYKTAEAIKLS----GGKITREP 350 (384)
Q Consensus 296 ~~~~~~~~~lel~~~~~~---~----~---~~~g~g~~hiaf~VdDvd~~~~~l~~~----G~~i~~~p 350 (384)
.+ +....++|..+... . . ...|+|++||||.|+||.+++++|+++ |+++...|
T Consensus 229 sp--~g~v~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 229 SN--NEMVLLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred cC--CCcEEEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 33 22467777765321 1 1 245789999999999999999999999 99998854
No 23
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.73 E-value=1.7e-16 Score=134.45 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=91.7
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc------ccCCCceeEEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE------YDKGNGYAQIA 326 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~------~~~g~g~~hia 326 (384)
++|+.|.|.|++++++||+++|||++..+...++ ....++..+ ...+.+........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999876543321 233334322 34555554222111 12456889999
Q ss_pred EEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCcc
Q 016689 327 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 379 (384)
Q Consensus 327 f~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f 379 (384)
|.|+|+++++++++++|++++.+|...+++ .+.++++||||+.|||++.++.
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999999999988875654 5899999999999999997754
No 24
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.8e-16 Score=132.37 Aligned_cols=114 Identities=29% Similarity=0.580 Sum_probs=87.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCC-----------CcEEEEEeecCCCCcceEEEEeccCCCccccCCC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGN 320 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~ 320 (384)
++.|++|.|.|+++|++||+++|||++.++.+.++ +.+..+++...++..+..++|.++++..+++.+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 68899999999999999999999999887765554 3444455554333457789999887766666555
Q ss_pred ceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 321 GYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 321 g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
+ |++|.|++. ++.++|+++|+++...|. .+++++||||+.|||++
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 566666666 566999999998886543 27899999999999986
No 25
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.72 E-value=2.8e-16 Score=133.03 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=91.3
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC------CcC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YDI 188 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~ 188 (384)
++|+.|.|+|+++++ +||+++|||++......+ ....+++..+ ...+++........ ...
T Consensus 1 ~~Hi~i~V~D~e~s~--------~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~ 66 (136)
T cd08342 1 FDHVEFYVGNAKQLA--------SWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKH 66 (136)
T ss_pred CeEEEEEeCCHHHHH--------HHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhc
Confidence 589999999999999 999999999987654322 1223444422 33555543221111 124
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC
Q 016689 189 GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 249 (384)
Q Consensus 189 g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 249 (384)
+.+..|++|.|+|+++++++|+++|+++..+|... .++.+.++++||||+.|||+|+...
T Consensus 67 ~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~-~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 67 GDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEE-PGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred CCceEEEEEEeCCHHHHHHHHHHcCCeEccCceec-CCeEEEEEEeccCCcEEEEEecCCC
Confidence 56889999999999999999999999999888764 3567889999999999999998765
No 26
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.72 E-value=2.5e-16 Score=134.74 Aligned_cols=118 Identities=18% Similarity=0.258 Sum_probs=87.9
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCc-eEEEEEeeCCCCccEEEEEEecCCCCCCcCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT 190 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~ 190 (384)
.++|+||+|.|+|+++++ +||+++|||++..+...+++. ...+|+..+. . ++.+.+... .+.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~--------~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~-~-~h~~~~~~~-------~~~ 66 (143)
T cd07243 4 AHRLDHCLLTGEDIAETT--------RFFTDVLDFYLAERVVDPDGGTRVGSFLSCSN-K-PHDIAFVGG-------PDG 66 (143)
T ss_pred CceeCEEEEecCCHHHHH--------HHHHHhcCCEEEEEEecCCCCeEEEEEEecCC-C-cceEEEecC-------CCC
Confidence 458999999999999999 999999999986654332222 2345665432 2 334444321 135
Q ss_pred CceEEEEEECCHHH---HHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 191 GFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 191 g~~hi~~~v~Dv~~---~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
++.|+||.|+|+++ +.++|+++|+++...|..+..+..+.+||+|||||+|||.+.
T Consensus 67 ~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 67 KLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred CceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 89999999999877 568999999999877765543456678999999999999764
No 27
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.72 E-value=1.4e-16 Score=153.09 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=105.0
Q ss_pred hhhhhhcccCCceeeccCCCcccCcc-cCCcchh-hcccccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEE
Q 016689 72 KALKLLRAEGSTIEASTSGNMAPTSN-TVTEQNV-LDWVKSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLL 149 (384)
Q Consensus 72 ~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~ 149 (384)
..+++.||+|+.+|++.......... ...+... ..+..+..++|+||.|.|+|+++++ +||+++|||++.
T Consensus 101 ~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~--------~FY~~~LG~~~~ 172 (303)
T TIGR03211 101 RRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENT--------RFFTEVLGFRLT 172 (303)
T ss_pred eEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEEEeEEeCCHHHHH--------HHHHHhcCCEEE
Confidence 46789999999999986443221100 0011111 1122233578999999999999999 999999999987
Q ss_pred eeeeCCCCce-EEEEEeeCCCCccEEEEEEecCCCCCCcCCCC-ceEEEEEECC---HHHHHHHHHHcCCeeeeCCcccc
Q 016689 150 RKRDIPEDRY-TNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG-FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVK 224 (384)
Q Consensus 150 ~~~~~~~~~~-~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g-~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~ 224 (384)
.....+.+.. ..+|+..+. . ++.+.+... .+.| +.|+||.|+| +++++++|+++|+++..+|....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~ 243 (303)
T TIGR03211 173 EQVVLGDGKEQAAAWLSVSN-K-AHDIAFVGD-------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHG 243 (303)
T ss_pred eeEEcCCCcEEEEEEEEcCC-C-CcccceecC-------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccC
Confidence 6543333322 345665432 1 223332211 1234 8999999997 55578899999999988876654
Q ss_pred CCCEEEEEEECCCCCEEEEe
Q 016689 225 GGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 225 ~g~~~~~~~~DPdG~~iel~ 244 (384)
.+..+++||+|||||+||+.
T Consensus 244 ~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 244 ITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred CCCceEEEEECCCCCEEEEe
Confidence 44567899999999999997
No 28
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.71 E-value=1.7e-16 Score=151.62 Aligned_cols=172 Identities=23% Similarity=0.312 Sum_probs=117.2
Q ss_pred hhhhhhcccccccccc---------------------cchhhhhhcccCCceeeccCCCcccCcccCCcchhhccccccc
Q 016689 54 LALFQLGAAIPQSHFF---------------------GAKALKLLRAEGSTIEASTSGNMAPTSNTVTEQNVLDWVKSDK 112 (384)
Q Consensus 54 ~~~~~~~~~~p~~~~~---------------------g~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (384)
-++.|+++.+++.+++ +..++++.||+|+.+|+......... . ............
T Consensus 59 ~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~~--~--~~~~~~~~~~~~ 134 (294)
T TIGR02295 59 AALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFEMEKVER--L--LRRYHRHRGVSP 134 (294)
T ss_pred cCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEEECCCCCEEEEEEchhhccc--c--cccccccCCccc
Confidence 3577888777765554 22477999999999999864322110 0 000000112245
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
++++||+|.|+|+++++ +||+++|||++......+.+.....|+... ..++.+.+... .+.++
T Consensus 135 ~~i~Hv~l~v~dl~~a~--------~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~ 197 (294)
T TIGR02295 135 VRLDHFNVFVPDVQRAL--------RFYKEELGFRVTEYTEDDEGNLAAAWLHRK--GGVHDIALTNG-------NGPRL 197 (294)
T ss_pred eeeeeEEEEeCCHHHHH--------HHHHHhcCCEEEEEeccCCCcEEEEEEecC--CCcCceEeecC-------CCCce
Confidence 78999999999999999 999999999987654333344345565432 22334444321 23689
Q ss_pred eEEEEEECC---HHHHHHHHHHcCCe--eeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 193 GHFGIAVED---VAKTVDLVKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 193 ~hi~~~v~D---v~~~~~~l~~~G~~--~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.|+||.|+| ++++.++|+++|++ +...|.....+...++|++||+||+||++..
T Consensus 198 ~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~ 256 (294)
T TIGR02295 198 HHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTG 256 (294)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEec
Confidence 999999998 55578999999998 6666665544556789999999999999874
No 29
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=2.5e-16 Score=133.95 Aligned_cols=121 Identities=20% Similarity=0.282 Sum_probs=89.6
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCC-----------CCcEEEEEeecCCCCcceEEEEeccCCCcc-----
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-----------DYKYTIAVMGYGPEDKNAVLELTYNHGVTE----- 315 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~lel~~~~~~~~----- 315 (384)
+++||.|.|.|++++++||++ |||++..+...+ .....+.++... .....+++.....+..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcCC
Confidence 689999999999999999998 999886543221 123445555432 2255677765322111
Q ss_pred --ccCCCceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 316 --YDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 316 --~~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
...+.|+.|+||.|+|+++++++|+++|+++..++...+++ .+++||+||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12345789999999999999999999999998766554443 4789999999999999985
No 30
>PRK11478 putative lyase; Provisional
Probab=99.71 E-value=3.3e-16 Score=130.62 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=85.5
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC-CceEEEEEeeCCCCccEEEEEEecCCC---CCCc
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE-DRYTNAFLGYGPEDSHFVVELTYNYGV---DKYD 187 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~ 187 (384)
..+++||+|.|+|+++++ +||+++|||++..+...++ ..+.. .+..+ + +..+++.....+ ....
T Consensus 4 i~~i~hv~l~v~D~~~a~--------~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~--~-~~~l~l~~~~~~~~~~~~~ 71 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSK--------AFYCDILGFTLQSEVYREARDSWKG-DLALN--G-QYVIELFSFPFPPERPSRP 71 (129)
T ss_pred cceecEEEEEcCCHHHHH--------HHHHHHhCCEeccccccccccccee-eEecC--C-CcEEEEEEecCCCCCCCCC
Confidence 457999999999999999 9999999999864322221 12211 22221 1 346666542211 1112
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
...|+.|++|.|+|+++++++|+++|+++...+.. ..++.+++|++|||||.|||+|.
T Consensus 72 ~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 72 EACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred CCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEeC
Confidence 34578999999999999999999999998643322 22346788999999999999873
No 31
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.71 E-value=9.2e-17 Score=138.98 Aligned_cols=119 Identities=26% Similarity=0.377 Sum_probs=90.0
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCC-CCceEEEEEeeCCCC---ccEEEEEEecCCCCCCcCC
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPED---SHFVVELTYNYGVDKYDIG 189 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~-~~~~~~~~l~~g~~~---~~~~lel~~~~~~~~~~~g 189 (384)
+|+||+|.|+|+++++ +||+++|||++......+ .+....+|+..+... .++.+.+... .+
T Consensus 1 ri~Hv~l~V~Dle~a~--------~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-------~~ 65 (153)
T cd07257 1 RLGHVVLEVPDFAASF--------DWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQG-------PE 65 (153)
T ss_pred CccEEEEecCCHHHHH--------HHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcC-------CC
Confidence 5899999999999999 999999999987654333 233456777653211 1112222211 14
Q ss_pred CCceEEEEEECCHHHHH---HHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 190 TGFGHFGIAVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 190 ~g~~hi~~~v~Dv~~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.|+.|+||.|+|++++. ++|+++|+++.+.|+....+...++|++|||||+|||....
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 68999999999999986 99999999999888766656677889999999999998654
No 32
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.71 E-value=3.6e-16 Score=136.63 Aligned_cols=126 Identities=28% Similarity=0.321 Sum_probs=89.6
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeee----eC--------------CCCceEEEEEeeCCCCccEE
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKR----DI--------------PEDRYTNAFLGYGPEDSHFV 174 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~ 174 (384)
++++||+|.|+|+++|+ +||+++|||++..+. .. ....+..+++..+. +..
T Consensus 3 ~~i~Hv~i~V~Dle~s~--------~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ 71 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAV--------KFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIG 71 (162)
T ss_pred ceEEEEEEEeCCHHHHH--------HHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCc
Confidence 57999999999999999 999999999885321 00 01124566776432 335
Q ss_pred EEEEecCCCCCC-----cCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCC-ccc-cC-CCEEEEEEECCCCCEEEEeec
Q 016689 175 VELTYNYGVDKY-----DIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREP-GPV-KG-GNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 175 lel~~~~~~~~~-----~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p-~~~-~~-g~~~~~~~~DPdG~~iel~~~ 246 (384)
++|.....+... ..+.|+.|++|.|+|+++++++|+++|+++...+ ... ++ ...+.+|++|||||.|||+++
T Consensus 72 ieL~~~~~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 151 (162)
T TIGR03645 72 VELFEFKNQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSH 151 (162)
T ss_pred EEEEeccCCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEc
Confidence 777654332111 1246899999999999999999999998765432 111 11 124688999999999999998
Q ss_pred CCC
Q 016689 247 GPT 249 (384)
Q Consensus 247 ~~~ 249 (384)
...
T Consensus 152 ~~~ 154 (162)
T TIGR03645 152 SYE 154 (162)
T ss_pred Chh
Confidence 643
No 33
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=4.8e-16 Score=131.27 Aligned_cols=118 Identities=25% Similarity=0.323 Sum_probs=90.5
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
.+++|++|.|+|+++++ +||+++|||++..... . ..+|+..+....++.+.+..... ...|+
T Consensus 2 ~~l~hi~l~v~dl~~s~--------~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~ 63 (134)
T cd08360 2 RRLGHVVLFVPDVEAAE--------AFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGF 63 (134)
T ss_pred ceeeEEEEEcCCHHHHH--------HHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcc
Confidence 47999999999999999 9999999999865432 1 25566654323355666643211 14689
Q ss_pred eEEEEEECCHHHHH---HHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 193 GHFGIAVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 193 ~hi~~~v~Dv~~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
.|++|.|+|++++. ++|+++|+++...|.....++.+++|++||+|++|||.....
T Consensus 64 ~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 64 HHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 99999999988766 699999999887776665566678899999999999997543
No 34
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.70 E-value=4.5e-16 Score=128.83 Aligned_cols=116 Identities=28% Similarity=0.320 Sum_probs=85.5
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
.++++|+.|.|+|+++++ +||+++|||++..... ++ .+++.......++.+.+... ...+
T Consensus 2 ~~~l~hv~l~v~Dl~~s~--------~FY~~~lG~~~~~~~~--~~---~~~~~~~~~~~~~~~~l~~~-------~~~~ 61 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAI--------KHYREVLGLDEVGRDD--QG---RVYLKAWDEFDHHSIVLREA-------DTAG 61 (122)
T ss_pred cceEeEEEEEeCCHHHHH--------HHHHhccCCEeeeecC--Cc---eEEEEccCCCcccEEEeccC-------CCCC
Confidence 368999999999999999 9999999999865421 11 34454322222344444321 2347
Q ss_pred ceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 192 FGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 192 ~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+.|++|.|+ |+++++++|+++|+++...|.....+.++.+||+|||||+||+.+..
T Consensus 62 ~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 62 LDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred eeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 889999997 78999999999999988765433334456889999999999998764
No 35
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=3.6e-16 Score=129.10 Aligned_cols=119 Identities=23% Similarity=0.372 Sum_probs=86.9
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC---CcCCC
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YDIGT 190 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~~g~ 190 (384)
+++|++|.|+|+++++ +||+++|||++..+...+...+..+|+..++ +..+++........ .....
T Consensus 1 ~~~Hi~l~v~dl~~s~--------~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~ 69 (125)
T cd07241 1 KIEHVAIWTKDLERMK--------AFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERT 69 (125)
T ss_pred CceEEEEEecCHHHHH--------HHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCC
Confidence 5899999999999999 9999999999865443333444556776542 34566654322111 12335
Q ss_pred CceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 191 GFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 191 g~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
|+.|++|.|+| +++++++|+++|+++..+|.... .+.+.++++|||||.|||.
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~-~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTG-DGYYESVILDPEGNRIEIT 125 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecC-CCeEEEEEECCCCCEEEeC
Confidence 89999999964 89999999999999987665443 2344577999999999983
No 36
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.69 E-value=8.9e-16 Score=146.28 Aligned_cols=156 Identities=22% Similarity=0.330 Sum_probs=108.0
Q ss_pred hhhhhhcccCCceeeccCCCcc-cCcccCCcchhhcccccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEe
Q 016689 72 KALKLLRAEGSTIEASTSGNMA-PTSNTVTEQNVLDWVKSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLR 150 (384)
Q Consensus 72 ~~~~l~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~ 150 (384)
.++++.||+||.+|.+.+.... ..... .|.....+ .....+|+||+|.|+|+++++ +||+++|||++..
T Consensus 101 ~~~~f~DPdGn~lEl~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~--------~FY~~~LGf~~~~ 170 (286)
T TIGR03213 101 GLIKFTDPGGNPLEIYYGAVEDFEKPFV-SPRAVSGF-VTGDQGLGHIVLRVPDVDAAL--------AFYTEVLGFQLSD 170 (286)
T ss_pred EEEEEECCCCCEEEEEEcccccCCCCCC-CCCCCCcc-ccCCccccEEEEEcCCHHHHH--------HHHHHccCCeEEE
Confidence 4688999999999998653321 11111 11111112 233578999999999999999 9999999999876
Q ss_pred eeeCCC--C-ceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEEEEECCHHH---HHHHHHHcCCeeeeCCcccc
Q 016689 151 KRDIPE--D-RYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVK 224 (384)
Q Consensus 151 ~~~~~~--~-~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~~~v~Dv~~---~~~~l~~~G~~~~~~p~~~~ 224 (384)
+...+. + .+..+|+..++ .++.+.+.... ...++.|++|.|+|.++ ++++|+++|+ ....|....
T Consensus 171 ~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~~~------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~ 241 (286)
T TIGR03213 171 VIDLPAGPGVTVRPYFLHCNE--RHHSLAFAAGP------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHT 241 (286)
T ss_pred eEcccCCCCCcceEEEEEECC--CcceEEEecCC------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCC
Confidence 532221 1 12356776643 24444443211 23589999999998666 7999999999 566666665
Q ss_pred CCCEEEEEEECCCCCEEEEeec
Q 016689 225 GGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 225 ~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.++..++|++||||++||+...
T Consensus 242 ~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 242 NDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred CCCeEEEEEECCCCcEEEeecC
Confidence 5678899999999999999763
No 37
>PRK11478 putative lyase; Provisional
Probab=99.68 E-value=1.1e-15 Score=127.57 Aligned_cols=121 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCC-CcEEEEEeecCCCCcceEEEEeccCCCc---cccCCCceeEEE
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-YKYTIAVMGYGPEDKNAVLELTYNHGVT---EYDKGNGYAQIA 326 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lel~~~~~~~---~~~~g~g~~hia 326 (384)
.+++||.|.|+|++++++||+++|||++..+...+. ..+.. .+... ....+++....... ......+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999864321111 11111 12111 13456654322111 112235788999
Q ss_pred EEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 327 IGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 327 f~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
|.|+|+++++++|++.|+++...+.....+ .+++||+|||||.|||++.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEeC
Confidence 999999999999999999987543322233 4789999999999999873
No 38
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=4.3e-16 Score=134.78 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=88.3
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCC-CCcEEEEEeecCCCC---cceEEEEeccCCCccccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPED---KNAVLELTYNHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~lel~~~~~~~~~~~g~g~~hiaf 327 (384)
+++||.|.|+|++++++||+++||+++..+...+ .......++..+... .++.+.+.. ..++++.|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 4789999999999999999999999987554333 222344555442210 011111111 11468999999
Q ss_pred EcCCHHHHH---HHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCcc
Q 016689 328 GTDDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 379 (384)
Q Consensus 328 ~VdDvd~~~---~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f 379 (384)
.|+|++++. ++|+++|+++.++|+.+..+...++||+|||||.|||......
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~ 128 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDL 128 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCcee
Confidence 999999986 9999999999988887665544678999999999999976543
No 39
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1.1e-15 Score=126.27 Aligned_cols=119 Identities=24% Similarity=0.325 Sum_probs=84.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc---ccCCCceeEEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE---YDKGNGYAQIAIG 328 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~---~~~g~g~~hiaf~ 328 (384)
+++||.|.|.|++++++||+++|||++..+...+...+...++..++ +..+++........ .....+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999865433333333444454321 34566654322211 1233578999999
Q ss_pred cC---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 329 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 329 Vd---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999998777544432 24578999999999983
No 40
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1.6e-15 Score=124.88 Aligned_cols=120 Identities=31% Similarity=0.409 Sum_probs=86.0
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCC-ceEEEEEeeCCCCccEEEEEEecCCC---CCCcC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGV---DKYDI 188 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~~ 188 (384)
++++|++|.|.|+++++ +||+++|||++......++. .+. +.+... + ...+++...... .....
T Consensus 2 ~~~~hi~l~v~d~~~a~--------~fy~~~lG~~~~~~~~~~~~~~~~-~~~~~~--~-~~~i~l~~~~~~~~~~~~~~ 69 (125)
T cd08352 2 FGIHHVAIICSDYEKSK--------EFYVEILGFKVIREVYRPERGSYK-LDLLLN--G-GYQLELFSFPNPPERPSYPE 69 (125)
T ss_pred CccceEEEEcCCHHHHH--------HHHHHhcCCEEeeeeecCCCCcEE-EEEecC--C-CcEEEEEEcCCCCCCCCCCc
Confidence 47999999999999999 99999999998755332222 222 223221 1 235555432221 11123
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 189 GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 189 g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
+.|+.|++|.|+|+++++++|+++|+++..++.... ++...+|++||+||.|||+|
T Consensus 70 ~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 70 ACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 468899999999999999999999999887653332 34667899999999999986
No 41
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.68 E-value=1.8e-15 Score=129.46 Aligned_cols=118 Identities=11% Similarity=0.129 Sum_probs=85.7
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcE-EEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEE
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY-TIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIG 328 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~ 328 (384)
+.+++||.|.|+|++++.+||+++|||++..+...+++.. ...++..+.. .+.+.+... ..+++.|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEecC-------CCCCceEEEEE
Confidence 4579999999999999999999999999866543322222 2334443322 334444321 13578999999
Q ss_pred cCCHHH---HHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 329 TDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 329 VdDvd~---~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
|+|+++ +.++|+++|+++..+|..+..+.++.+||+|||||.|||+..
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999777 568999999998877765543335789999999999999763
No 42
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.68 E-value=1.7e-15 Score=128.81 Aligned_cols=118 Identities=23% Similarity=0.412 Sum_probs=88.1
Q ss_pred ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCC
Q 016689 111 DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT 190 (384)
Q Consensus 111 ~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~ 190 (384)
|..++.|+.|.|+|+++++ +||+++|||++..+.. ..+++..+ +..+.+......+....+.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~--------~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~ 62 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSI--------EFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQ 62 (139)
T ss_pred CCCcEEEEEEEecCHHHHH--------HHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCC
Confidence 4568999999999999999 9999999999864321 24555543 2344443322222222345
Q ss_pred CceEEEEEEC--CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 191 GFGHFGIAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 191 g~~hi~~~v~--Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
++.|++|.++ |+++++++|+++|+++..+|..... ..+.+|++|||||+|||.+..
T Consensus 63 ~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 63 SYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred CeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 7889999998 9999999999999998766654433 557889999999999998765
No 43
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.68 E-value=1.7e-15 Score=127.87 Aligned_cols=120 Identities=19% Similarity=0.227 Sum_probs=89.8
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V 329 (384)
|.++.||.|.|.|++++++||+++||+++..+.. . ...++..+....++.+.+..... ...++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEe
Confidence 4579999999999999999999999999865432 1 12344433222345666654221 246899999999
Q ss_pred CCHHHHH---HHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCcc
Q 016689 330 DDVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDF 379 (384)
Q Consensus 330 dDvd~~~---~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f 379 (384)
+|++++. ++|+++|+++..+|...+.+..+++||+||+||.|||......
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~ 123 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDY 123 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccc
Confidence 9888776 5999999998877776665545779999999999999986643
No 44
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.67 E-value=1.8e-15 Score=131.10 Aligned_cols=122 Identities=23% Similarity=0.351 Sum_probs=92.4
Q ss_pred cccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCC---CCceEEEEEeeCCCCccEEEEEEecCCCCCC
Q 016689 110 SDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIP---EDRYTNAFLGYGPEDSHFVVELTYNYGVDKY 186 (384)
Q Consensus 110 ~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~ 186 (384)
+..++|+||+|.|+|+++++ +||+++|||++......+ +.....+|+..++ .++.+.+....
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~--------~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~~----- 69 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAH--------AFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEGP----- 69 (154)
T ss_pred cCCCccCEEEEEeCCHHHHH--------HHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcCC-----
Confidence 34568999999999999999 999999999986543322 1234567776642 23345543321
Q ss_pred cCCCCceEEEEEECCHH---HHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 187 DIGTGFGHFGIAVEDVA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 187 ~~g~g~~hi~~~v~Dv~---~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.+.++.|++|.|+|.+ +++++|+++|+++..++...+.++.+.+|++||||++|||....
T Consensus 70 -~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 70 -GPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred -CCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 1368999999998755 68999999999998877766656778899999999999998664
No 45
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.67 E-value=9.5e-16 Score=127.35 Aligned_cols=119 Identities=30% Similarity=0.504 Sum_probs=86.6
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC------Cc
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------YD 187 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~ 187 (384)
+++|++|.|+|+++++ +||+++|||++......++..+..+++..+ ...++|........ ..
T Consensus 1 ~i~hv~l~v~D~~~s~--------~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~ 68 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAA--------KLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEK 68 (128)
T ss_pred CCCEEEEEeCCHHHHH--------HHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhc
Confidence 5899999999999999 999999999987554333334556666643 23566654322110 11
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeC-CccccCCCEEEEEE--ECCCCCEEEEee
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 245 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~-p~~~~~g~~~~~~~--~DPdG~~iel~~ 245 (384)
.+.|..|++|.|+|+++++++|+++|+++..+ |.... ++.+..|+ +||||+.||++|
T Consensus 69 ~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 69 NGGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 24588899999999999999999999998764 43332 34456666 799999999975
No 46
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.67 E-value=1.9e-15 Score=132.10 Aligned_cols=126 Identities=23% Similarity=0.242 Sum_probs=88.2
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeee----cC--------------CCCcEEEEEeecCCCCcceEEEEeccC
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKR----DN--------------PDYKYTIAVMGYGPEDKNAVLELTYNH 311 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~~~~~~~~~lel~~~~ 311 (384)
+.+++||.|.|.|+++|++||+++|||++..+. .. ....+.+.++..+. +..+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 357999999999999999999999999875321 10 11124556665432 3446776543
Q ss_pred CCccc-----cCCCceeEEEEEcCCHHHHHHHHHHCCCeEecCC-cc-CCCC-CceEEEEECCCCCeEEEEecCc
Q 016689 312 GVTEY-----DKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREP-GP-LPGI-NTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 312 ~~~~~-----~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p-~~-~~~~-~~~~~~~~DPdG~~iElve~~~ 378 (384)
+.... ..+.|..|++|.|+|+++++++++++|+++..++ .. .++. ..+.+||+|||||.|||++...
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 32211 1246899999999999999999999998765432 11 1221 1378999999999999999763
No 47
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.66 E-value=3.3e-15 Score=130.35 Aligned_cols=118 Identities=25% Similarity=0.384 Sum_probs=84.6
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
++|+||.|.|+|+++++ +||+++|||++......+.+....+|+..+. .++.+.+... .+.++
T Consensus 2 ~~l~Hv~l~V~Dl~~s~--------~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~~-------~~~~~ 64 (161)
T cd07256 2 QRLDHFNLRVPDVDAGL--------AYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTGG-------NGPRL 64 (161)
T ss_pred ceEEEEEEecCCHHHHH--------HHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEecC-------CCCce
Confidence 58999999999999999 9999999999865433323333345665332 2334444321 23578
Q ss_pred eEEEEEECC---HHHHHHHHHHcCCee--eeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 193 GHFGIAVED---VAKTVDLVKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 193 ~hi~~~v~D---v~~~~~~l~~~G~~~--~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.|++|.|+| +++++++|+++|+.. ...|.....++..++|++|||||.||+++..
T Consensus 65 ~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 65 HHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 999999986 777889999999863 3344433334556899999999999998643
No 48
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.66 E-value=2.9e-15 Score=123.38 Aligned_cols=119 Identities=18% Similarity=0.286 Sum_probs=83.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCC-CcEEEEEeecCCCCcceEEEEeccCCC--c-cccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-YKYTIAVMGYGPEDKNAVLELTYNHGV--T-EYDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~lel~~~~~~--~-~~~~g~g~~hiaf 327 (384)
.++||.|.|.|++++++||+++|||+.......++ ..+.+ .+.... ...+++...... . ....+.+..|++|
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG---GYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC---CcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 68999999999999999999999999875432222 22222 222111 234444322111 1 1123468899999
Q ss_pred EcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 328 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
.|+|++++.+++++.|+++..++....++ .+++|++||+||.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFTG-KRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCCc-eEEEEEECCCCCEEEecC
Confidence 99999999999999999987765433333 468999999999999986
No 49
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.64 E-value=7e-15 Score=119.89 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=83.8
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCH
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDV 332 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDv 332 (384)
+.|+.|.|+|++++++||+++||+++..... +...+ .++..++ ...+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999864432 12223 3344332 1223333221111 2234667999999999
Q ss_pred HHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 333 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 333 d~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
++++++++++|+++..+|...+++ ++.++|+|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999888776644 589999999999999975
No 50
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.64 E-value=3.9e-15 Score=123.65 Aligned_cols=119 Identities=23% Similarity=0.349 Sum_probs=85.2
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc-c---c--cCCCceeEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-E---Y--DKGNGYAQI 325 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~-~---~--~~g~g~~hi 325 (384)
+++|+.|.|.|++++++||+++|||++......++.+..+.++..+ ...+++....... . + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999987544333334455555432 2455554421111 1 1 124578899
Q ss_pred EEEcCCHHHHHHHHHHCCCeEecC-CccCCCCCceEEEE--ECCCCCeEEEEe
Q 016689 326 AIGTDDVYKTAEAIKLSGGKITRE-PGPLPGINTKITAC--LDPDGWKSVFVD 375 (384)
Q Consensus 326 af~VdDvd~~~~~l~~~G~~i~~~-p~~~~~~~~~~~~~--~DPdG~~iElve 375 (384)
+|.|+|+++++++++++|+++..+ |...+++ .+.+|+ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998864 4443443 245566 799999999985
No 51
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.64 E-value=4.7e-15 Score=122.68 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=83.4
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.++.|+.|.|+|++++++||+++|||++..... +. . +++.......++.+.+... ...+..|++|.|+
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~-~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--R-VYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--e-EEEEccCCCcccEEEeccC-------CCCCeeEEEEEeC
Confidence 478999999999999999999999999865421 11 1 2232211112344444321 2346789999996
Q ss_pred ---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 331 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 331 ---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
|++++.++++++|+++...|.....+.++.+||+|||||.||+....+
T Consensus 71 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 71 DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 899999999999999887654333322578999999999999987653
No 52
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.64 E-value=4.5e-15 Score=126.70 Aligned_cols=113 Identities=22% Similarity=0.300 Sum_probs=87.6
Q ss_pred eEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEE
Q 016689 116 LHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 195 (384)
Q Consensus 116 ~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 195 (384)
+||.|.|+|+++++ +||+++|||++..+.. . ..+|+...+...++.+.+... ...++.|+
T Consensus 1 ~Hv~l~V~Dle~s~--------~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hi 60 (141)
T cd07258 1 GHVVIGSENFEASR--------DSLVEDFGFRVSDLIE---D--RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHV 60 (141)
T ss_pred CcEEEecCCHHHHH--------HHHHhcCCCEeeeeeC---C--EEEEEEcCCCCCcceeeeccC-------CCCceEEE
Confidence 59999999999999 9999999999875532 1 467776543333444443211 23589999
Q ss_pred EEEECCH---HHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 196 GIAVEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 196 ~~~v~Dv---~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
+|.|+|+ ++++++|+++|+++...|...+.+..+++|++||||+.||+.....
T Consensus 61 af~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 61 NFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred EEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 9999864 5679999999999988887776667788899999999999987653
No 53
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.64 E-value=1.4e-15 Score=125.53 Aligned_cols=120 Identities=28% Similarity=0.414 Sum_probs=84.3
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeC--CCCceEEEEEeeCCCCccEEEEEEecCCCCCCcC---
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDI--PEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDI--- 188 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~--- 188 (384)
+|+||++.|+|+++++ +||+++|||+++..... ........++..+ ..++.+.............
T Consensus 1 ~l~Hi~i~v~d~~~~~--------~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 70 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAI--------DFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG--EGHIELFLNPSPPPRASGHSFP 70 (128)
T ss_dssp EEEEEEEEESCHHHHH--------HHHHHTTTSEEEEEEEEESTTEEEEEEEEEST--SSCEEEEEEESSSSSSEEEHHH
T ss_pred CeEEEEEEcCCHHHHH--------HHHHHHhCCcEEeeeccccccccccceeeccc--ccceeeeeeccccccccccccc
Confidence 6899999999999999 99999999999887662 2223344555543 2233333332222221111
Q ss_pred CCCceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEE
Q 016689 189 GTGFGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 189 g~g~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel 243 (384)
..+..|+++.+. |+++++++|++.|+++..+|.....+....+|++||||+.|||
T Consensus 71 ~~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 71 EHGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SHTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred cccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 013455666655 6788999999999999998877777777777899999999997
No 54
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.64 E-value=6.7e-15 Score=121.19 Aligned_cols=117 Identities=29% Similarity=0.463 Sum_probs=85.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCC---CCCCcCC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG---VDKYDIG 189 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~---~~~~~~g 189 (384)
++++|+.|.|+|+++++ +||+++|||++....+.+ . .+++..+. ..+++..... +.....+
T Consensus 2 ~~l~hi~l~v~d~~~s~--------~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~ 65 (125)
T cd07253 2 KRIDHVVLTVADIEATL--------DFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPG 65 (125)
T ss_pred cccceEEEEecCHHHHH--------HHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCC
Confidence 47999999999999999 999999999987543211 1 23344331 3455543222 1222345
Q ss_pred CCceEEEEEECC-HHHHHHHHHHcCCeeeeCCccccC--CCEEEEEEECCCCCEEEEee
Q 016689 190 TGFGHFGIAVED-VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 190 ~g~~hi~~~v~D-v~~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~~ 245 (384)
.|..|++|.+++ +++++++|+++|+++..+|....+ +..+.+|++|||||+||+.+
T Consensus 66 ~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 66 PGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred CCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 688999999985 999999999999999877654432 34578899999999999986
No 55
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.64 E-value=6.4e-15 Score=121.77 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=83.6
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
..+++|++|.|+|+++++ +||+++|||++..+.+ ..+|+.......++.+.+... ...+
T Consensus 4 i~~i~hv~l~v~dl~~a~--------~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~ 62 (121)
T cd09013 4 IAHLAHVELLTPKPEESL--------WFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAG 62 (121)
T ss_pred ccEeeEEEEEeCCHHHHH--------HHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCc
Confidence 468999999999999999 9999999999875532 245665433223445555432 2358
Q ss_pred ceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 192 FGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 192 ~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+.|++|.|+ |+++++++++++|+++...+... +.+..+|++|||||+||+....
T Consensus 63 ~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 63 LGHIAWRASSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 899999998 58889999999999875433222 2345779999999999998643
No 56
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.64 E-value=4.6e-15 Score=122.35 Aligned_cols=114 Identities=27% Similarity=0.354 Sum_probs=83.9
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
.+++.|+.|.|+|+++++ +||+++|||++....+ ..+|+.......++.+.+... ...+
T Consensus 2 ~~~i~hi~l~v~d~~~~~--------~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~ 60 (121)
T cd07266 2 ILRLGHVELRVTDLEKSR--------EFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAG 60 (121)
T ss_pred cceeeEEEEEcCCHHHHH--------HHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCc
Confidence 468999999999999999 9999999999864421 234554221122334444321 2247
Q ss_pred ceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 192 FGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 192 ~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
..|++|.|. |+++++++++++|+++...|.....+....+|+.|||||+||+...
T Consensus 61 ~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 61 LGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred eeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 889999984 7899999999999998765444444455688999999999999864
No 57
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.63 E-value=7.8e-15 Score=121.31 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=83.9
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCce
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 193 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 193 (384)
+|.||+|.|+|+++|+ +||+++|||++..+.. . ..+|+..++ .++.+.+... ...++.
T Consensus 2 ~l~~v~l~v~Dl~~s~--------~FY~~~LG~~~~~~~~--~---~~~~~~~~~--~~~~~~l~~~-------~~~~~~ 59 (120)
T cd07252 2 SLGYLGVESSDLDAWR--------RFATDVLGLQVGDRPE--D---GALYLRMDD--RAWRIAVHPG-------EADDLA 59 (120)
T ss_pred cccEEEEEeCCHHHHH--------HHHHhccCceeccCCC--C---CeEEEEccC--CceEEEEEeC-------CCCcee
Confidence 6899999999999999 9999999999864421 1 245555432 3455655432 124788
Q ss_pred EEEEEECC---HHHHHHHHHHcCCeeeeCCccc--cCCCEEEEEEECCCCCEEEEeecC
Q 016689 194 HFGIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 194 hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
|++|.+++ +++++++|+++|+++...|.+. ..+....+|++|||||+|||+...
T Consensus 60 ~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 60 YAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 99999974 8889999999999998765322 234457889999999999998653
No 58
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=8e-15 Score=125.14 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC--
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 331 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD-- 331 (384)
.||.|.|+|++++++||+++|||++..+... ...++.+.....++.+.+.. ....++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998765321 24455543322234443322 124689999999976
Q ss_pred -HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCccccc
Q 016689 332 -VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLDFLKE 382 (384)
Q Consensus 332 -vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~f~~~ 382 (384)
++++.++++++|+++..+|+.++.+..+.+||+||||+.|||.-..+..+|
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~~ 120 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFAE 120 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceecc
Confidence 457799999999999988887665556889999999999999887765554
No 59
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=6.7e-15 Score=119.95 Aligned_cols=117 Identities=25% Similarity=0.329 Sum_probs=86.1
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc--ccCCCceeEEEEEcCCH
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIGTDDV 332 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~--~~~g~g~~hiaf~VdDv 332 (384)
||.|.|.|++++++||+++|||++..+....+ ...++.+..... ....+.+........ .....+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 79999999999999999999999986653222 234444443211 134555554332211 12345778999999999
Q ss_pred HHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 333 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 333 d~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
+++.++++++|+++..+|...++ ++.+||+|||||.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999988754444 589999999999999975
No 60
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.63 E-value=1.1e-14 Score=122.22 Aligned_cols=116 Identities=30% Similarity=0.438 Sum_probs=89.1
Q ss_pred eEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEE
Q 016689 116 LHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 195 (384)
Q Consensus 116 ~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 195 (384)
+||.|.|+|+++++ +||+++|||++......+ +....+|+..++ .++.+.+.... ...++.|+
T Consensus 1 ~Hv~l~V~dl~~a~--------~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl 63 (131)
T cd08343 1 DHVVLRTPDVAATA--------AFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHV 63 (131)
T ss_pred CcEEEEcCCHHHHH--------HHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEE
Confidence 59999999999999 999999999987654433 333566776542 23455554321 14588999
Q ss_pred EEEECCHH---HHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 196 GIAVEDVA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 196 ~~~v~Dv~---~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
+|.|+|++ +++++|+++|+++..+|...+.+..++++++|||||+|||.+..+
T Consensus 64 ~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 64 AFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 99999875 688999999999988776555456678899999999999998754
No 61
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.63 E-value=1.1e-14 Score=118.74 Aligned_cols=114 Identities=24% Similarity=0.229 Sum_probs=84.1
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceE
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 194 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~h 194 (384)
+.|+.|.|+|+++++ +||+++|||++..... +.. ..+++..++ ...+.+....... ....+..|
T Consensus 1 ~~hi~l~v~d~~~s~--------~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~ 64 (114)
T cd07247 1 PVWFELPTTDPERAK--------AFYGAVFGWTFEDMGD-GGG--DYAVFSTGG---GAVGGLMKAPEPA--AGSPPGWL 64 (114)
T ss_pred CEEEEeeCCCHHHHH--------HHHHhccCceeeeccC-CCC--ceEEEEeCC---ccEEEEecCCCCC--CCCCCeEE
Confidence 479999999999999 9999999999875542 122 234454432 1223333222111 12345678
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 195 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 195 i~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
++|.|+|+++++++|+++|+++..+|...+ +.++.++++|||||.|+|+|
T Consensus 65 ~~f~v~di~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 65 VYFAVDDVDAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred EEEEeCCHHHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 999999999999999999999998886654 45678999999999999975
No 62
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.62 E-value=1e-14 Score=126.25 Aligned_cols=122 Identities=16% Similarity=0.183 Sum_probs=90.2
Q ss_pred CCCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCC---CCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEE
Q 016689 249 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP---DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQI 325 (384)
Q Consensus 249 ~~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hi 325 (384)
.+.+++||.|.|+|++++++||+++|||++..+.... +....+.++..+. .++.+.+... ....++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 3568999999999999999999999999986543321 1133455555432 2344444332 124678999
Q ss_pred EEEcCCHH---HHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 326 AIGTDDVY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 326 af~VdDvd---~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+|.|+|++ ++.++|+++|+++..+|..++.+..+.+|++||+||.|||+....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~ 133 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGR 133 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCce
Confidence 99997755 689999999999988877666544688999999999999987654
No 63
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=2.1e-14 Score=118.94 Aligned_cols=118 Identities=24% Similarity=0.401 Sum_probs=87.2
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC-CCCcCCCC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV-DKYDIGTG 191 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g 191 (384)
++|+|++|.|+|+++++ +||+++|||++.... + ..+++..+. ....+.+...... .......+
T Consensus 1 ~~i~hi~l~v~d~~~~~--------~Fy~~~lG~~~~~~~---~---~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~ 64 (125)
T cd07255 1 TRIGAVTLRVADLERSL--------AFYQDVLGLEVLERT---D---STAVLGTGG--KRPLLVLEEDPDAPPAPPGATG 64 (125)
T ss_pred CEEEEEEEEECCHHHHH--------HHHHhccCcEEEEcC---C---CEEEEecCC--CeEEEEEEeCCCCCcccCCCCc
Confidence 47999999999999999 999999999997552 1 245665432 2445666543322 12233468
Q ss_pred ceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC
Q 016689 192 FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 249 (384)
Q Consensus 192 ~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 249 (384)
..|++|.|+| +++++++|+++|+++... ... +..+.+|++|||||+||+....+.
T Consensus 65 ~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 65 LYHFAILLPSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecCc
Confidence 8999999984 889999999999987543 222 344678999999999999987653
No 64
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.1e-14 Score=118.73 Aligned_cols=117 Identities=24% Similarity=0.296 Sum_probs=85.0
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCC--CCcCCCCceE
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD--KYDIGTGFGH 194 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~--~~~~g~g~~h 194 (384)
||+|.|.|+++++ +||+++|||++..+.... +....+++... ......+.+....... ......+..|
T Consensus 1 Hv~l~v~d~~~~~--------~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 70 (119)
T cd07263 1 LVSLYVDDQDKAL--------AFYTEKLGFEVREDVPMG-GGFRWVTVAPP-GSPETSLVLAPPANPAAMSGLQPGGTPG 70 (119)
T ss_pred CceEEeCCHHHHH--------HHHHhccCeEEEEeeccC-CCcEEEEEeCC-CCCeeEEEEeCCCCccccccccCCCceE
Confidence 8999999999999 999999999998665322 22334444422 1113455554332221 1123457889
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 195 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 195 i~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
++|.|+|+++++++|+++|+++..++... +.++.+|++|||||+|||+|
T Consensus 71 ~~~~v~di~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 71 LVLATDDIDATYEELKARGVEFSEEPREM--PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred EEEEehHHHHHHHHHHhCCCEEeeccccC--CCceEEEEECCCCCEEEEeC
Confidence 99999999999999999999999877433 34578899999999999975
No 65
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.62 E-value=1.3e-14 Score=124.24 Aligned_cols=114 Identities=24% Similarity=0.431 Sum_probs=86.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
.+++|+.|.|.|+++++ +||+++|||++..... . ..+|+..+.. ++.+.+... ...++
T Consensus 3 ~~l~Hv~i~V~Dle~s~--------~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~ 60 (144)
T cd07239 3 VKISHVVLNSPDVDKTV--------AFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSL 60 (144)
T ss_pred ceeeEEEEECCCHHHHH--------HHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCce
Confidence 47999999999999999 9999999999864321 1 2456765432 334444321 13578
Q ss_pred eEEEEEECCHHHHH---HHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 193 GHFGIAVEDVAKTV---DLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 193 ~hi~~~v~Dv~~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
.|++|.|+|++++. ++|+++|+++...+.....+...++||+||+||+|||++...
T Consensus 61 ~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 61 NHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 89999999987764 899999999987765544455667899999999999998753
No 66
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=1.6e-14 Score=125.61 Aligned_cols=118 Identities=20% Similarity=0.217 Sum_probs=86.0
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC-CcCCCCc
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGF 192 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~ 192 (384)
+++||+|.|+|+++++ +||+++|||++..+.. . ...|...+. ..++.+++........ .....++
T Consensus 1 gl~HI~i~V~Dle~s~--------~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l 66 (157)
T cd08347 1 GLHGVTLTVRDPEATA--------AFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTV 66 (157)
T ss_pred CcccEEEEeCCHHHHH--------HHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCce
Confidence 4799999999999999 9999999999876532 1 233433221 2345677765422221 2223578
Q ss_pred eEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 193 GHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 193 ~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
.|++|.|+| +++++++|+++|+.+.. +.. .+..+.+|++|||||+||+.+..+
T Consensus 67 ~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~-~~~--~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 67 HHVAFRVPDDEELEAWKERLEALGLPVSG-IVD--RFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCccc-ccc--cccEEEEEEECCCCcEEEEEECCC
Confidence 999999998 89999999999998643 322 234578899999999999998754
No 67
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=1.7e-14 Score=119.77 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=83.3
Q ss_pred ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCC
Q 016689 111 DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGT 190 (384)
Q Consensus 111 ~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~ 190 (384)
|.+++.|+.|.|+|+++|+ +||+++|||++.... +.+ +++..++ +..+++... . ...
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~--------~FY~~~lG~~~~~~~----~~~--~~~~~~~---~~~l~~~~~--~----~~~ 57 (123)
T cd08351 1 MTVTLNHTIVPARDREASA--------EFYAEILGLPWAKPF----GPF--AVVKLDN---GVSLDFAQP--D----GEI 57 (123)
T ss_pred CcceEeEEEEEcCCHHHHH--------HHHHHhcCCEeeecc----CCE--EEEEcCC---CcEEEEecC--C----CCC
Confidence 4578999999999999999 999999999986522 122 2233222 234554432 1 123
Q ss_pred CceEEEEEEC--CHHHHHHHHHHcCCeeeeCCccc------cCCCEEEEEEECCCCCEEEEeec
Q 016689 191 GFGHFGIAVE--DVAKTVDLVKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 191 g~~hi~~~v~--Dv~~~~~~l~~~G~~~~~~p~~~------~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
+..|++|.++ |+++++++|+++|+++..+|... ..++++.+||+|||||.|||++.
T Consensus 58 ~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 58 PPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred CcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 4679999887 69999999999999987765433 12456899999999999999986
No 68
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.62 E-value=1.4e-14 Score=119.57 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=84.1
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCC-ceEEEEEeeCCCCccEEEEEEecCCCCC--CcCCC
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED-RYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGT 190 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~ 190 (384)
+++||+|.|.|+++++ +||+++|||++.......+. .....++.......+..+++........ .....
T Consensus 1 ~i~hv~l~v~d~~~a~--------~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 72 (126)
T cd08346 1 GLHHVTLITRDAQETV--------DFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPG 72 (126)
T ss_pred CcccEEEEcCChhHhH--------HHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCC
Confidence 4789999999999999 99999999998766543221 1123344322112344666654322211 22234
Q ss_pred CceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 191 GFGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 191 g~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
++.|++|.|+ |+++++++++++|+++...+. . ++.+.+|++|||||+|||+
T Consensus 73 ~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 73 QIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 7889999998 469999999999999875433 2 3567889999999999985
No 69
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.61 E-value=1.9e-14 Score=125.51 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=83.3
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V 329 (384)
|.+++||.|.|+|++++++||+++|||++......++......++.... ..+.+.+.. ..++++.|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4578999999999999999999999999865433322322333443221 233444432 1245789999999
Q ss_pred CC---HHHHHHHHHHCCCe--EecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 330 DD---VYKTAEAIKLSGGK--ITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 330 dD---vd~~~~~l~~~G~~--i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+| ++++.++|+++|+. +..+|+.+.....+++||+|||||.||+++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~~ 125 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGDY 125 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecCc
Confidence 75 77788999999986 334454433223467999999999999987543
No 70
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.61 E-value=2.4e-14 Score=125.59 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=88.2
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
..+|+|++|.|+|+++++ +||+++|||++......+.+....+|+...+ .++.+.+... .. ....+
T Consensus 4 i~~i~Hi~l~V~Dle~a~--------~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~--~~--~~~~~ 69 (166)
T cd09014 4 VRRLDHVNLLASDVDANR--------DFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRD--PA--GARGR 69 (166)
T ss_pred cceeeeEEEEcCCHHHHH--------HHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecC--CC--CCCCC
Confidence 468999999999999999 9999999999876543333333456665432 2333443321 11 12246
Q ss_pred ceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 192 FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 192 ~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+.|++|.|+| +++++++|+++|+++..+|.....+...++|++|||||+|||.+..
T Consensus 70 ~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 70 LHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 8899999986 4578899999999987776655434555789999999999999873
No 71
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.61 E-value=1.7e-14 Score=120.17 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=83.8
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
..+|.||.|.|+|++++. +||+++|||++..+. + ..+|+..+. . ++.+.+.... ++
T Consensus 4 ~~~l~~v~l~v~d~~~s~--------~FY~~vLG~~~~~~~---~---~~~~l~~~~-~-~~~i~l~~~~--------~~ 59 (124)
T cd08361 4 LQDIAYVRLGTRDLAGAT--------RFATDILGLQVAERT---A---KATYFRSDA-R-DHTLVYIEGD--------PA 59 (124)
T ss_pred EEEeeEEEEeeCCHHHHH--------HHHHhccCceeccCC---C---CeEEEEcCC-c-cEEEEEEeCC--------Cc
Confidence 458999999999999999 999999999986432 1 245666532 2 4445553211 35
Q ss_pred ceEEEEEECC---HHHHHHHHHHcCCeeeeCCcccc--CCCEEEEEEECCCCCEEEEeecC
Q 016689 192 FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 192 ~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~--~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
..|++|.|+| +++++++|+++|+++...+.... .+...++||+|||||+||+..+.
T Consensus 60 ~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 60 EQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred eEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 6789999986 99999999999999876553221 23456789999999999998653
No 72
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=2e-14 Score=120.98 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=83.2
Q ss_pred ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCc-eEEEEEeeCCCCccEEEEEEecCCCCCCcCC
Q 016689 111 DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDR-YTNAFLGYGPEDSHFVVELTYNYGVDKYDIG 189 (384)
Q Consensus 111 ~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g 189 (384)
|+.+++|+.|.|+|+++++ +||+++|||++..+....... ....++..+ ...+++...... ..
T Consensus 1 mi~~i~hv~l~V~dl~~s~--------~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~----~~ 64 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTT--------AFLQNIFNAREVYSSGDKTFSLSKEKFFLIG----GLWIAIMEGDSL----QE 64 (131)
T ss_pred CcccEeEEEEEeCCHHHHH--------HHHHHHhCCeeEEecccccccccceeEEEcC----CeEEEEecCCCC----CC
Confidence 4568999999999999999 999999999876543211000 001122222 124555422111 12
Q ss_pred CCceEEEEEEC--CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 190 TGFGHFGIAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 190 ~g~~hi~~~v~--Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.++.|++|.|+ |+++++++|+++|+++.... +...+.++.+||+|||||.|||....
T Consensus 65 ~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 65 RTYNHIAFKISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred CCceEEEEEcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 47899999998 79999999999999886432 33334567999999999999998653
No 73
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.61 E-value=3.2e-14 Score=119.46 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=86.1
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHH
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVY 333 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd 333 (384)
+||.|.|+|++++++||+++||+++......+ +.....++..+. .++.+.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987554332 222334444332 23445554321 1468899999999875
Q ss_pred ---HHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 334 ---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 334 ---~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+++++++++|+++..+|...+.+..++++|+|||||.|||.+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999988776655443578899999999999998663
No 74
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=1.5e-14 Score=119.90 Aligned_cols=119 Identities=29% Similarity=0.519 Sum_probs=88.0
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCC-CCceEEEEEeeCCCCccEEEEEEecCCC-CC-----Cc
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIP-EDRYTNAFLGYGPEDSHFVVELTYNYGV-DK-----YD 187 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~-----~~ 187 (384)
++||.|.|+|+++++ +||+++|||+.......+ +.....+++..+ ...+++...... .. ..
T Consensus 1 ~~hv~l~v~d~~~~~--------~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~ 68 (128)
T cd07249 1 IDHIGIAVPDLEAAI--------KFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEK 68 (128)
T ss_pred CcEEEEEeCCHHHHH--------HHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhc
Confidence 579999999999999 999999999987654332 233456677643 445666543221 11 13
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCC--CCEEEEee
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 245 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPd--G~~iel~~ 245 (384)
.+.|..|++|.|+|+++++++++++|+++..+|.....++..+.++.||| |+.|||+|
T Consensus 69 ~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 69 RGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 46789999999999999999999999999887764444555555555555 99999975
No 75
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.60 E-value=1e-14 Score=117.55 Aligned_cols=113 Identities=28% Similarity=0.364 Sum_probs=82.7
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC-CcCCCCce
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK-YDIGTGFG 193 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~ 193 (384)
|+|++|.|+|+++++ +||+++|||++..+...+ ...+++..++. ..+++........ ...+.+..
T Consensus 1 i~Hi~l~v~d~~~~~--------~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~ 66 (114)
T cd07245 1 LDHVALRVPDLEASR--------AFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDD 66 (114)
T ss_pred CCeEEEecCCHHHHH--------HHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccc
Confidence 589999999999999 999999999986543222 12345554432 2445543322211 12345788
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEE
Q 016689 194 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 194 hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel 243 (384)
|++|.|+|+++++++++++|+++..++.. ..+.+.++++||||++|||
T Consensus 67 ~~~~~v~d~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 67 HIAFRVDDLDAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 99999999999999999999999877654 2344578999999999996
No 76
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.60 E-value=2.2e-14 Score=121.93 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=85.0
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.++.|+.|.|+|++++++||+++|||++..+. . ...++..+ +..+.+.............+..|++|.++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~ 72 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKG----R--KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIE 72 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeec----C--eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEec
Confidence 36899999999999999999999999986432 1 12233322 34444433222211222356789999997
Q ss_pred --CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 --DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 --Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|+++++++++++|+++..+|...+++ ++.+||+|||||.|||.+..
T Consensus 73 ~~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 73 EEDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999988776655543 58999999999999998743
No 77
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.60 E-value=3.2e-14 Score=116.20 Aligned_cols=111 Identities=27% Similarity=0.431 Sum_probs=85.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
++++|+.|.|+|+++++ +||+++|||++....+ ..+|+..+. ..++.+.+... ...+.
T Consensus 1 ~~l~hv~l~v~d~~~~~--------~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~ 58 (117)
T cd07240 1 RRIAYAELEVPDLERAL--------EFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGV 58 (117)
T ss_pred CceeEEEEecCCHHHHH--------HHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCc
Confidence 48999999999999999 9999999999876531 245665432 23445555432 12478
Q ss_pred eEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 193 GHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 193 ~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.|++|.|+ |+++++++|+++|+++...+...+ ++.+.+|+.||+||++|++..
T Consensus 59 ~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 59 DALGFEVASEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred eeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEc
Confidence 89999998 588899999999999988765333 355678999999999999865
No 78
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=5.4e-14 Score=116.23 Aligned_cols=115 Identities=24% Similarity=0.262 Sum_probs=83.6
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccc----cCCCceeEEEEEcCC
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY----DKGNGYAQIAIGTDD 331 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~----~~g~g~~hiaf~VdD 331 (384)
-.|.|.|++++++||+++||+++......+++......+..+ ...+.+......... ...++..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999997665333333333334432 223333322211111 233567899999999
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
+++++++++++|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999988877765 478999999999999964
No 79
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.59 E-value=1.8e-14 Score=121.24 Aligned_cols=114 Identities=23% Similarity=0.370 Sum_probs=82.1
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceE
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGH 194 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~h 194 (384)
|+||.|.|+|+++++ +||+++|||++.... . ..+++..+ ...+.+......+......+..|
T Consensus 1 i~HV~l~V~Dl~~a~--------~FY~~~LG~~~~~~~----~--~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~h 62 (131)
T cd08363 1 INHMTFSVSNLDKSI--------SFYKHVFMEKLLVLG----E--KTAYFTIG----GTWLALNEEPDIPRNEIRQSYTH 62 (131)
T ss_pred CceEEEEECCHHHHH--------HHHHHhhCCEEeccC----C--ccceEeeC----ceEEEEEccCCCCcCCcCccceE
Confidence 689999999999999 999999999986432 1 12344443 23444433222222222357889
Q ss_pred EEEEECC--HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 195 FGIAVED--VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 195 i~~~v~D--v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
++|.|++ +++++++|+++|+++..++.... +..+.+|++|||||+|||.+..
T Consensus 63 iaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 63 IAFTIEDSEFDAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred EEEEecHHHHHHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecCc
Confidence 9999984 99999999999999875543332 3456889999999999998753
No 80
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.59 E-value=3.5e-14 Score=116.85 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=83.8
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCC---ccccCCCceeEEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV---TEYDKGNGYAQIAIG 328 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~---~~~~~g~g~~hiaf~ 328 (384)
+++|+.|.|.|++++++||+++|||+........ .+.. +..+ ...+++...... .......+..|++|.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~--~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~ 74 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKA--LRFG----SQKINLHPVGGEFEPAAGSPGPGSDDLCLI 74 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceE--EEeC----CEEEEEecCCCccCcCccCCCCCCceEEEE
Confidence 5899999999999999999999999987543221 2222 2222 234555432211 112234678999999
Q ss_pred cCC-HHHHHHHHHHCCCeEecCCccCCC--CCceEEEEECCCCCeEEEEe
Q 016689 329 TDD-VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 329 VdD-vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iElve 375 (384)
+++ +++++++++++|+++..+|...++ +.++.+||+|||||.||+.+
T Consensus 75 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 75 TEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 975 999999999999999887765432 22478999999999999986
No 81
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.59 E-value=6.6e-14 Score=117.64 Aligned_cols=120 Identities=27% Similarity=0.435 Sum_probs=86.5
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCce
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 193 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 193 (384)
+|+|+.|.|+|+++++ +||+++|||++...... ...+|+..+. ..+..+.+.............++.
T Consensus 1 ~i~hv~l~v~D~~~s~--------~FY~~~lG~~~~~~~~~----~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~ 67 (134)
T cd08348 1 RLSHVVLYVRDLEAMV--------RFYRDVLGFTVTDRGPL----GGLVFLSRDP-DEHHQIALITGRPAAPPPGPAGLN 67 (134)
T ss_pred CeeEEEEEecCHHHHH--------HHHHHhcCCEEEeeccC----CcEEEEEecC-CCceEEEEEecCCCCCCCCCCCce
Confidence 5899999999999999 99999999998654321 1355665431 223456665443322122346889
Q ss_pred EEEEEECCHH---HHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC
Q 016689 194 HFGIAVEDVA---KTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 249 (384)
Q Consensus 194 hi~~~v~Dv~---~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 249 (384)
|++|.|+|++ +++++|+++|+++...+. .+..+.+|++|||||+|||+...+.
T Consensus 68 h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 68 HIAFEVDSLDDLRDLYERLRAAGITPVWPVD---HGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCCccccCC---CCceeEEEEECCCCCEEEEEEcCCC
Confidence 9999999865 578999999999876542 2345778999999999999987653
No 82
>PRK06724 hypothetical protein; Provisional
Probab=99.59 E-value=3.8e-14 Score=118.91 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=78.5
Q ss_pred ccceeeEEEEEeCCHHHHHhhcCCChhHHhhhcc---CCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCc
Q 016689 111 DKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 111 ~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~L---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~ 187 (384)
|..+++||.|.|+|+++|+ +||+++| ||+..... .+ ..+ ...+.+...... ..
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~--------~FY~~vlg~lg~~~~~~~---------~~-~~g----~~~l~l~~~~~~--~~ 59 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESI--------SFYDMLFSIIGWRKLNEV---------AY-STG----ESEIYFKEVDEE--IV 59 (128)
T ss_pred cCcccCEEEEEeCCHHHHH--------HHHHHHHhhCCcEEeeeE---------ee-eCC----CeeEEEecCCcc--cc
Confidence 5678999999999999999 9999966 66653211 11 101 111222111010 11
Q ss_pred CCCCceEEEEEE---CCHHHHHHHHHHcCCeeeeCCcccc--CCCEEEEEEECCCCCEEEEeec
Q 016689 188 IGTGFGHFGIAV---EDVAKTVDLVKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 188 ~g~g~~hi~~~v---~Dv~~~~~~l~~~G~~~~~~p~~~~--~g~~~~~~~~DPdG~~iel~~~ 246 (384)
...|..|+||.| +|+++++++|+++|+++..+|...+ +++.+.+||+|||||.||+...
T Consensus 60 ~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 60 RTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred CCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 234788999998 6899999999999999987775543 2455788999999999999876
No 83
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=6.1e-14 Score=116.73 Aligned_cols=117 Identities=22% Similarity=0.364 Sum_probs=86.0
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhcc---CCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC---Cc
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECL---GMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK---YD 187 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~L---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~ 187 (384)
+|+||+|.|.|+++++ +||+++| ||++..+.+ + ...|... ..+..+++........ ..
T Consensus 1 ~i~Hv~i~v~d~~~~~--------~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~---~~~~~i~l~~~~~~~~~~~~~ 64 (128)
T cd07242 1 GIHHVELTVRDLERSR--------AFYDWLLGLLGFEEVKEWE--D---GRSWRAG---DGGTYLVLQQADGESAGRHDR 64 (128)
T ss_pred CCceEEEEeCCHHHHH--------HHHHHHHhhcCCEEEEeec--c---CceEEec---CCceEEEEEecccCCCccccc
Confidence 4799999999999999 9999999 999876541 1 1233322 1245666654333221 12
Q ss_pred CCCCceEEEEEECC---HHHHHHHHHHcCCeeeeCCccc--cCCCEEEEEEECCCCCEEEEeec
Q 016689 188 IGTGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 188 ~g~g~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.+.|+.|++|.|+| +++++++|+++|+++...+... ..++.+.+|++|||||+|||+.+
T Consensus 65 ~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 65 RNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 34678999999974 8899999999999998876542 23467788999999999999853
No 84
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.58 E-value=5.5e-15 Score=121.92 Aligned_cols=120 Identities=28% Similarity=0.320 Sum_probs=81.5
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeec--CCCCcEEEEEeecCCCCcceEEEEeccCCCccccC---CCceeEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRD--NPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDK---GNGYAQIA 326 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~---g~g~~hia 326 (384)
+|+||.|.|.|++++++||+++|||++..... ..........+..+. ....+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE--GHIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS--SCEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc--cceeeeeeccccccccccccccccceeEE
Confidence 47999999999999999999999999987765 122233444444432 233333332221111110 01334555
Q ss_pred EEc---CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 327 IGT---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 327 f~V---dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
+.+ +|+++++++|++.|+++..+|.....+....+||+||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 555 67888999999999999988876666544566899999999997
No 85
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=3.1e-14 Score=117.49 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEE--e--cCCCCCCcC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELT--Y--NYGVDKYDI 188 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~--~--~~~~~~~~~ 188 (384)
+++.|+.|.|.|+++|+ +||+++|||++.... + . ...+ ..+ ..+.+. + .........
T Consensus 1 ~~~~~~~l~v~D~~~a~--------~FY~~~lG~~~~~~~--~--~-~~~~-~~~-----~~l~~~~~~~~~~~~~~~~~ 61 (120)
T cd09011 1 MKFKNPLLVVKDIEKSK--------KFYEKVLGLKVVMDF--G--E-NVTF-EGG-----FALQEGYSWLEGISKADIIE 61 (120)
T ss_pred CEEEEEEEEECCHHHHH--------HHHHHhcCCEEeecc--C--c-eEEE-ecc-----ceeccchhhhccCCcccccc
Confidence 37899999999999999 999999999986432 1 1 1122 111 111110 0 011111223
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCC-eeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 189 GTGFGHFGIAVEDVAKTVDLVKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 189 g~g~~hi~~~v~Dv~~~~~~l~~~G~-~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
+.+..|++|.|+|+++++++|+++|+ ++..+|...++ +.+.++|+|||||+|||.+.
T Consensus 62 ~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 62 KSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred cCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 34567999999999999999999986 67777766654 45788999999999999874
No 86
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.58 E-value=3.9e-14 Score=116.88 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=83.3
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCC-cEEEEEeecCCCCcceEEEEeccCCCcc--ccCCCceeEEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY-KYTIAVMGYGPEDKNAVLELTYNHGVTE--YDKGNGYAQIAIG 328 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~lel~~~~~~~~--~~~g~g~~hiaf~ 328 (384)
.++||.|.|.|++++++||+++|||++..+....+. ....+++.......+..+++........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 378999999999999999999999998766543221 1122333322112345666654332211 1223467899999
Q ss_pred cC---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 329 TD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 329 Vd---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
|+ |+++++++++++|+++..++.. .+ ++.+||+||+||.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH-FG--ERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee-cc--eEEEEEECCCCCEEEeC
Confidence 97 5799999999999998754432 22 58899999999999985
No 87
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=4.3e-14 Score=116.62 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=79.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEec----cCCCccccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTY----NHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~----~~~~~~~~~g~g~~hiaf 327 (384)
++.++.|.|.|+++|++||+++||+++.... +. . .. +.. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~~--~-~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--GE--N-VT-FEG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeecc--Cc--e-EE-Eec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 4678999999999999999999999985322 11 1 11 111 11111110 001111223345579999
Q ss_pred EcCCHHHHHHHHHHCCC-eEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 328 GTDDVYKTAEAIKLSGG-KITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~-~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
.|+|+++++++++++|+ ++..+|...+++ .+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888777775 4899999999999999874
No 88
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.57 E-value=7.4e-14 Score=115.50 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=80.2
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccC--------CC--ccccCCCce
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNH--------GV--TEYDKGNGY 322 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~--------~~--~~~~~g~g~ 322 (384)
+.|+.|.|+|++++++||+++|||++..... +..+.. +..+ ...+.+.... .. ......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGE--LETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEE--ecCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4789999999999999999999999864321 112211 2111 1122221100 00 011122344
Q ss_pred eEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 323 AQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 323 ~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
.|++|.|+|+++++++++++|+++..+|...+++ .+.++++|||||.||++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 6999999999999999999999998888777775 3788999999999999874
No 89
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.57 E-value=3.6e-14 Score=114.27 Aligned_cols=113 Identities=25% Similarity=0.224 Sum_probs=80.9
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc-ccCCCceeEEEEEcCC
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD 331 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~-~~~g~g~~hiaf~VdD 331 (384)
++|+.|.|.|++++++||+++|||++..+...+. .. .++..++ ...+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~--~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PG--AWLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-Cc--eEEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999865432221 11 2233222 12445543322211 1234567899999999
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
+++++++++++|+++..++...++ ++.+||+||+||.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDG--VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCC--ccEEEEECCCCCEEeC
Confidence 999999999999999887754233 4789999999999996
No 90
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=7.3e-14 Score=121.41 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=84.1
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc-ccCCCceeEEEEEcC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTD 330 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~-~~~g~g~~hiaf~Vd 330 (384)
.++||.|.|+|++++.+||+++|||++..+.. .. +.+...+. ..++.+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~--~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DR--VRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CE--EEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 37899999999999999999999999875532 11 22222211 2256677765322211 122357889999998
Q ss_pred C---HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 D---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 D---vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
| +++++++|++.|+++. ++...++ ++.+||+|||||.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 9999999999999864 3333333 57899999999999999855
No 91
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.57 E-value=4.4e-14 Score=118.86 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=81.6
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC--
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 330 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd-- 330 (384)
|+||.|.|+|++++++||+++|||++..... .. .++..+ +..+.+......+......+..|++|.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~--~~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KT--AYFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----cc--ceEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999864321 11 122222 24444543322211222357789999997
Q ss_pred CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|+++++++++++|+++..++.....+ ++.+||+|||||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~-~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRD-RKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCc-ceEEEEECCCCCEEEEecCc
Confidence 49999999999999987655433332 58899999999999999865
No 92
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.57 E-value=6.9e-14 Score=115.84 Aligned_cols=118 Identities=25% Similarity=0.400 Sum_probs=84.8
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCC-CCcEEEEEeecCCCCcceEEEEeccCCCc-c-----ccCCCceeEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNP-DYKYTIAVMGYGPEDKNAVLELTYNHGVT-E-----YDKGNGYAQI 325 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~lel~~~~~~~-~-----~~~g~g~~hi 325 (384)
++||.|.|.|++++++||+++|||+........ +.....+++..+ ...+++..+.... . ...+.+..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 233445555542 4555655432211 1 1345788999
Q ss_pred EEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCC---CCeEEEEe
Q 016689 326 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPD---GWKSVFVD 375 (384)
Q Consensus 326 af~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPd---G~~iElve 375 (384)
+|.|+|+++++++++++|+++..+|...+.+ ++.+++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAG-GKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCC-CCEEEEEecCCCceEEEEecC
Confidence 9999999999999999999999887633333 3445555554 99999975
No 93
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=2.3e-13 Score=112.42 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=82.6
Q ss_pred EEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC----CcCCCCce
Q 016689 118 VVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK----YDIGTGFG 193 (384)
Q Consensus 118 v~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~----~~~g~g~~ 193 (384)
-.|.|+|+++++ +||+++||+++......+++....+.+..+ + ..+.+........ .....+..
T Consensus 3 p~l~v~d~~~a~--------~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (122)
T cd08355 3 PTLRYRDAAAAI--------DWLTDAFGFEERLVVPDDDGGVAHAELRFG--D--GGVMVGSVRDDYRASSARAGGAGTQ 70 (122)
T ss_pred EEEEECCHHHHH--------HHHHHhcCCEEEEEEeCCCCcEEEEEEEEC--C--EEEEEecCCCcccccccccCCCceE
Confidence 478999999999 999999999997665333333334445543 1 1333332211111 12335667
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 194 HFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 194 hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
|++|.|+|+++++++++++|+++..+|...+.| .+.++++|||||+|+|.+
T Consensus 71 ~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 71 GVYVVVDDVDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 899999999999999999999999888766544 567789999999999964
No 94
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.56 E-value=1.9e-13 Score=112.32 Aligned_cols=115 Identities=25% Similarity=0.240 Sum_probs=85.1
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc--cccCCCceeEEEEEcCCHH
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDDVY 333 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~--~~~~g~g~~hiaf~VdDvd 333 (384)
..|.|.|++++++||+++||+++......+++......+..+ ...+.+....... ......+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 468899999999999999999998665544444444444432 2345554321110 1123456789999999999
Q ss_pred HHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 334 KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 334 ~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
++++++.+.|+++..+|...+++ .+.++++|||||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEec
Confidence 99999999999999888766665 489999999999999986
No 95
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.56 E-value=8.9e-14 Score=114.29 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=82.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
.+|+|+.|.|+|+++++ +||+++|||+...... . .+++..+. ..++.+.+... ..+++
T Consensus 2 ~~i~hv~l~v~d~~~s~--------~FY~~~lG~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~-------~~~~~ 59 (120)
T cd08362 2 TALRGVGLGVPDLAAAA--------AFYREVWGLSVVAEDD----G--IVYLRATG-SEHHILRLRRS-------DRNRL 59 (120)
T ss_pred ceeeEEEEecCCHHHHH--------HHHHhCcCcEEEEecC----C--EEEEECCC-CccEEEEeccC-------CCCCC
Confidence 47999999999999999 9999999999864321 2 34554322 22334443221 12367
Q ss_pred eEEEEEEC---CHHHHHHHHHHcCCeeeeCCcccc-CCCEEEEEEECCCCCEEEEeecC
Q 016689 193 GHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 193 ~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.|++|.++ |+++++++|+++|+++..+|.... .++.+.++++||+||+|||+...
T Consensus 60 ~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 60 DVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 89999994 689999999999999887664332 23466789999999999998764
No 96
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.56 E-value=1.8e-13 Score=113.89 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred CceeeeeecCChHHHHHHHHHhh---CCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc---ccCCCceeEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE---YDKGNGYAQI 325 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~---~~~g~g~~hi 325 (384)
+++||.|.|.|++++++||+++| ||++..+.. + ...+... ..+..+.+........ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47899999999999999999999 999876541 1 1122211 1145566654332211 1234678899
Q ss_pred EEEcC---CHHHHHHHHHHCCCeEecCCccC--CCCCceEEEEECCCCCeEEEEec
Q 016689 326 AIGTD---DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 326 af~Vd---Dvd~~~~~l~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iElve~ 376 (384)
+|.|+ |+++++++++++|+++..++... ....++++||+|||||.|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99996 58899999999999998877642 12235899999999999999864
No 97
>PRK06724 hypothetical protein; Provisional
Probab=99.56 E-value=8.9e-14 Score=116.68 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=77.6
Q ss_pred CCceeeeeecCChHHHHHHHHHhh---CCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEE
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAF---GMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf 327 (384)
..++||.|.|+|+++|++||+++| |++.........+ ...+.+..... ......+..|+||
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCc--cccCCCCceeEEE
Confidence 469999999999999999999966 6665321111111 11122211111 0112346789999
Q ss_pred Ec---CCHHHHHHHHHHCCCeEecCCccCCC-CCc-eEEEEECCCCCeEEEEecCc
Q 016689 328 GT---DDVYKTAEAIKLSGGKITREPGPLPG-INT-KITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 328 ~V---dDvd~~~~~l~~~G~~i~~~p~~~~~-~~~-~~~~~~DPdG~~iElve~~~ 378 (384)
.| +|++++.++++++|+++..+|...+. +.+ +.+||+|||||.||++..++
T Consensus 70 ~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~~ 125 (128)
T PRK06724 70 QAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTPN 125 (128)
T ss_pred ecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCCC
Confidence 98 78999999999999999888765442 223 67899999999999987643
No 98
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.56 E-value=1.2e-13 Score=118.38 Aligned_cols=114 Identities=16% Similarity=0.292 Sum_probs=83.8
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.++.||.|.|.|++++++||+++|||++..... . ...++..+.. .+.+.+... ..+++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~~--~~~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNSD--HHSIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCCC--cceEEEccC-------CCCceEEEEEECC
Confidence 468999999999999999999999999864321 1 1234444322 344454321 1357889999999
Q ss_pred CHHHHH---HHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 331 DVYKTA---EAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 331 Dvd~~~---~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
|++++. ++|+++|+++..+|.....+..+++||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 887775 899999999887765433332467899999999999998764
No 99
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.56 E-value=1.6e-13 Score=112.24 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=79.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
.+++|+.|.|+|+++++ +||++ |||++..+. + ..+|+..+. ..++.+.+... ..+++
T Consensus 2 ~~l~hv~l~v~Dl~~s~--------~FY~~-lGl~~~~~~--~----~~~~~~~~~-~~~~~~~~~~~-------~~~~~ 58 (113)
T cd07267 2 TDIAHVRFEHPDLDKAE--------RFLTD-FGLEVAART--D----DELYYRGYG-TDPFVYVARKG-------EKARF 58 (113)
T ss_pred cEEEEEEEccCCHHHHH--------HHHHH-cCCEEEEec--C----CeEEEecCC-CccEEEEcccC-------CcCcc
Confidence 58999999999999999 99999 999986442 1 134554321 22323222111 12578
Q ss_pred eEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 193 GHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 193 ~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.|++|.|+|.+++.+.++++|..+...+. .+ ++.+.+||+|||||.|||+..
T Consensus 59 ~~~af~v~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 59 VGAAFEAASRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred cEEEEEECCHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 89999999999999999999998775432 22 345688999999999999865
No 100
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.55 E-value=1.3e-14 Score=133.74 Aligned_cols=253 Identities=21% Similarity=0.349 Sum_probs=166.5
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCC--ceEEEEEeeCCCCccEEEEEEecCCC-----CC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED--RYTNAFLGYGPEDSHFVVELTYNYGV-----DK 185 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~-----~~ 185 (384)
.+++||.+.|+|...+. +||+..|||+....++...+ .+...-+..| +.-+.+.-.++++- .-
T Consensus 16 l~f~Hi~F~vgna~q~A--------~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l 85 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAA--------RWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHL 85 (381)
T ss_pred eeeeEEEEEecCcHHHH--------HHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhh
Confidence 58999999999999999 99999999998765433221 1111111111 11111111111111 11
Q ss_pred CcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccC--CCEEEEEEECCCCCEEEEeecCCC--------------
Q 016689 186 YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT-------------- 249 (384)
Q Consensus 186 ~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~~~~~~-------------- 249 (384)
...|.|..-+||+|+|++++...++++|+++..+|..... |..+++.+..+-.....++++...
T Consensus 86 ~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~ 165 (381)
T KOG0638|consen 86 VKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSD 165 (381)
T ss_pred hhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccc
Confidence 2356678889999999999999999999999998876653 556777777776666666666531
Q ss_pred ---C-------CCceeeeeecC--ChHHHHHHHHHhhCCeEeeeecCCCCc-----EEEEEeecCCCCcceEEEEeccCC
Q 016689 250 ---P-------EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYK-----YTIAVMGYGPEDKNAVLELTYNHG 312 (384)
Q Consensus 250 ---~-------~~~~hV~L~V~--Dle~s~~FY~~vLG~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~lel~~~~~ 312 (384)
| .+++|++..++ .++.+.+||.+.|||.-.+..+++.-. .+.+.+... +....+.+.++..
T Consensus 166 ~~fp~l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~--~esi~mpinEp~~ 243 (381)
T KOG0638|consen 166 ALFPKLPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANY--EESIKMPINEPAP 243 (381)
T ss_pred cccCCCCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcC--CccEEEeccCCCC
Confidence 1 25899999999 688999999999999988766543211 011112211 1123333433221
Q ss_pred -Cc---------cccCCCceeEEEEEcCCHHHHHHHHHHCCCeEecCCccC--------C--CC----------CceEEE
Q 016689 313 -VT---------EYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPL--------P--GI----------NTKITA 362 (384)
Q Consensus 313 -~~---------~~~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~--------~--~~----------~~~~~~ 362 (384)
.. .+..|+|++||++.++||-.+.+.++++|+++..+|... . .. .-.+..
T Consensus 244 G~k~ksQIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILv 323 (381)
T KOG0638|consen 244 GKKKKSQIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILV 323 (381)
T ss_pred CCccHHHHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEE
Confidence 11 135688999999999999999999999999999888431 0 00 012344
Q ss_pred EECCCCCeEEEEecC
Q 016689 363 CLDPDGWKSVFVDNL 377 (384)
Q Consensus 363 ~~DPdG~~iElve~~ 377 (384)
=.|-.|.++.|+..+
T Consensus 324 D~De~gyLLQIFTKp 338 (381)
T KOG0638|consen 324 DFDENGYLLQIFTKP 338 (381)
T ss_pred ecCCCcEEeeeeccc
Confidence 577888888887743
No 101
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.55 E-value=1.4e-13 Score=120.64 Aligned_cols=120 Identities=20% Similarity=0.174 Sum_probs=84.4
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.+++|+.|.|+|++++++||+++|||++......+.+.....++.... ....+.+.... ....+++.|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~----~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP----AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC----CCCCCCceEEEEECC
Confidence 468999999999999999999999999876543332222233443321 13334443211 112346789999998
Q ss_pred C---HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 331 D---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 331 D---vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
| +++++++++++|+++..+|.........++|++|||||.|||++.
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 557889999999998777765443334578999999999999997
No 102
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.55 E-value=9.2e-14 Score=114.81 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.+++|+.|.|+|++++.+||+++|||++..+.+ . .+++...+....+.+.+... ..++..|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCCCccEEEEeeC-------CCCceEEEEEEcC
Confidence 468999999999999999999999999875432 1 22343222222444555431 2357899999996
Q ss_pred ---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 ---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|++++.++++++|+++...+..... ++.+||+|||||.||++...
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEec
Confidence 6889999999999987543332222 46789999999999998643
No 103
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.55 E-value=3.7e-13 Score=110.59 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=85.3
Q ss_pred EEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC--CCCcCCCCceEE
Q 016689 118 VVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--DKYDIGTGFGHF 195 (384)
Q Consensus 118 v~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~~~~~g~g~~hi 195 (384)
..|.|.|+++++ +||+++||+++......+++.+..+.+..+. ..+.+...... .....+.+..|+
T Consensus 5 ~~l~v~d~~~a~--------~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd07246 5 PYLIVRDAAAAI--------DFYKKAFGAEELERMPDDDGRVMHAELRIGD----SVLMLADEFPEHGSPASWGGTPVSL 72 (122)
T ss_pred EEEEECCHHHHH--------HHHHHhhCCEEEEEEeCCCCCEEEEEEEECC----EEEEEecCCcccCCCCCCCCceEEE
Confidence 468999999999 9999999999987765444544455555431 23444432111 011233467799
Q ss_pred EEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 196 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 196 ~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
+|.|+|++++++++.++|+++..+|.... .+.+.++++||||++|+|.+.
T Consensus 73 ~~~v~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 73 HLYVEDVDATFARAVAAGATSVMPPADQF-WGDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred EEEeCCHHHHHHHHHHCCCeEecCccccc-ccceEEEEECCCCCEEEEecC
Confidence 99999999999999999999988876554 456788999999999999873
No 104
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.55 E-value=1.5e-13 Score=114.04 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=80.6
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC-
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 330 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd- 330 (384)
++.|+.|.|.|+++|++||+++|||++.... +.+..+.+. + +..+.+... ....+..|++|.|+
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~~ 68 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVSE 68 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeCH
Confidence 5789999999999999999999999986422 122222222 1 344555432 11234579999886
Q ss_pred -CHHHHHHHHHHCCCeEecCCccCC------CCCceEEEEECCCCCeEEEEecC
Q 016689 331 -DVYKTAEAIKLSGGKITREPGPLP------GINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 -Dvd~~~~~l~~~G~~i~~~p~~~~------~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|+++++++++++|+++..+|...+ ...++.+||+|||||.|||++.+
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 699999999999999877665321 12258999999999999999863
No 105
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.54 E-value=1.2e-13 Score=113.89 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=82.0
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc-
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT- 329 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V- 329 (384)
.++.|+.|.|+|++++++||+++|||++..... .+ +++........+.+.+... ..++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCCceEEEEEeeC-------CCCceeEEEEECC
Confidence 368999999999999999999999999864321 12 2233211112334444321 235788999999
Q ss_pred --CCHHHHHHHHHHCCCeEecCCcc-CCCCCceEEEEECCCCCeEEEEecCc
Q 016689 330 --DDVYKTAEAIKLSGGKITREPGP-LPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 330 --dDvd~~~~~l~~~G~~i~~~p~~-~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+|+++++++++++|+++...|.. .++. ++.+|++|||||.||++...+
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~DPdG~~ve~~~~~~ 120 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQ-GRALRVEDPLGFPIEFYAEMD 120 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCC-ccEEEEECCCCCEEEEEeccc
Confidence 57899999999999998766443 3443 478999999999999987543
No 106
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.7e-14 Score=120.51 Aligned_cols=124 Identities=34% Similarity=0.551 Sum_probs=88.4
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCC-------C--------CccEEEEE
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-------E--------DSHFVVEL 177 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~-------~--------~~~~~lel 177 (384)
.++.|..++|.|+.+++ .||++++||.+..+.++++..+...|+++.. . ..+..+||
T Consensus 21 ~~~~~t~~rvkd~~~Sl--------~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~EL 92 (170)
T KOG2944|consen 21 YLLQQTMLRVKDPTGSL--------KFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLEL 92 (170)
T ss_pred hhhhhceeecccchhhh--------hhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceee
Confidence 35678888888888888 8888888888776655554444444443310 0 01346788
Q ss_pred EecCCCCC-----Cc----CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 178 TYNYGVDK-----YD----IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 178 ~~~~~~~~-----~~----~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
+.+.+... +. .+.|++||||.|+|+++++++|+++|+++...+.+ +-...++|+.|||||+||+...
T Consensus 93 thn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~d--Gk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 93 THNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKD--GKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCC--ccccceeEEECCCCCeEEEeec
Confidence 87766432 21 22599999999999999999999999998776542 2234689999999999999765
No 107
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.54 E-value=2.2e-13 Score=114.57 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=80.2
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCC--cEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDY--KYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V 329 (384)
.++||.|.|+|++++++||+++||+++..+...... ....++. .+ ...+.+..... ...++..|++|.|
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~l~~~~~----~~~~~~~Hiaf~v 74 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IG----GLWIAIMEGDS----LQERTYNHIAFKI 74 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cC----CeEEEEecCCC----CCCCCceEEEEEc
Confidence 689999999999999999999999987544321110 0011111 11 23455543211 1224678999999
Q ss_pred C--CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 330 D--DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 330 d--Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+ |++++.++|+++|+++..+. +...+.++.+||+|||||.|||....
T Consensus 75 ~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 75 SDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred CHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 7 79999999999999876432 22332368999999999999998643
No 108
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.53 E-value=2.6e-13 Score=111.43 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=79.6
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc-c---ccCCCceeEEEEEcC
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-E---YDKGNGYAQIAIGTD 330 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~-~---~~~g~g~~hiaf~Vd 330 (384)
+..|.|.|+++|++||+++|||++.... ..+. .+..+.. ...+.+....... + ........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~--~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYV--SLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEE--EEecCCC--ceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 5689999999999999999999987431 1122 2322211 2444443211110 0 111223359999999
Q ss_pred CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 331 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 331 Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
|+++++++++++|+++..+|...+++ .+.++++|||||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999988888776664 488999999999999986
No 109
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.53 E-value=1.8e-13 Score=113.08 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=81.4
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC-
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 330 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd- 330 (384)
++.||.|.|+|+++|++||+++|||++..+.. ... +++..+. .++.+.+... ..++..|++|.|+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~--~~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGA--LYLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCe--EEEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 58899999999999999999999999864421 112 2333322 2455555432 1246789999996
Q ss_pred --CHHHHHHHHHHCCCeEecCCccC--CCCCceEEEEECCCCCeEEEEecC
Q 016689 331 --DVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 --Dvd~~~~~l~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|+++++++|+++|+++...|.+. ..+.++.+||+|||||.||++...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58899999999999998755321 222247899999999999998754
No 110
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=3e-13 Score=111.84 Aligned_cols=115 Identities=20% Similarity=0.287 Sum_probs=78.5
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecC--------C--CC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY--------G--VD 184 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~--------~--~~ 184 (384)
+.|+.|.|+|+++++ +||+++|||++..... .+.|. .+..+ ...+.+.... . +.
T Consensus 1 ~~~~~l~v~D~~~s~--------~FY~~~lG~~~~~~~~--~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 64 (125)
T cd07264 1 FGYTIIYVEDVEKTL--------EFYERAFGFERRFLHE--SGDYG--ELETG----ETTLAFASHDLAESNLKGGFVKA 64 (125)
T ss_pred CceEEEEEcCHHHHH--------HHHHHhhCCeEEeecC--CCcEE--EecCC----cEEEEEEcccccccccccCccCC
Confidence 479999999999999 9999999999864321 22221 12111 1111111100 0 01
Q ss_pred CCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 185 KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 185 ~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
......+..|++|.|+|+++++++++++|+++..+|...++| .+.++++|||||.||++++
T Consensus 65 ~~~~~~~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 65 DPAQPPAGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred ccccCCCcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 111122345899999999999999999999998887666544 4578899999999999874
No 111
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.53 E-value=2.8e-13 Score=111.22 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=79.3
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC--C---CCcCCCC
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV--D---KYDIGTG 191 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~---~~~~g~g 191 (384)
++.|.|+|+++++ +||+++|||++.... .. .+.+..+ +....+.+...... + ....+.+
T Consensus 4 ~~~l~v~D~~~s~--------~FY~~~lG~~~~~~~----~~--~~~~~~~--~~~~~l~l~~~~~~~~~~~~~~~~~~~ 67 (119)
T cd08359 4 YPVIVTDDLAETA--------DFYVRHFGFTVVFDS----DW--YVSLRSP--DGGVELAFMLPGHETVPAAQYQFQGQG 67 (119)
T ss_pred eeEEEECCHHHHH--------HHHHHhhCcEEEecc----Cc--EEEEecC--CCceEEEEccCCCCCCcchhcccCCce
Confidence 6789999999999 999999999987542 11 2334332 11234444322111 1 1122334
Q ss_pred ceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 192 FGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 192 ~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
. |++|.|+|+++++++++++|+++..+|...+. +.+.++++|||||.|||+|
T Consensus 68 ~-~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 68 L-ILNFEVDDVDAEYERLKAEGLPIVLPLRDEPW-GQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred E-EEEEEECCHHHHHHHHHhcCCCeeeccccCCC-cceEEEEECCCCCEEEEEC
Confidence 4 89999999999999999999998877765554 4577889999999999986
No 112
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.53 E-value=1.5e-13 Score=114.38 Aligned_cols=110 Identities=16% Similarity=0.204 Sum_probs=81.0
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
.++.||.|.|+|++++.+||+++|||++..+. + . ..++..+. .++.+.+... .++..|++|.|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~--~--~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERT--A--K--ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCC--C--C--eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 36899999999999999999999999986432 1 1 23344432 2444555321 135679999997
Q ss_pred C---HHHHHHHHHHCCCeEecCCccC---CCCCceEEEEECCCCCeEEEEecC
Q 016689 331 D---VYKTAEAIKLSGGKITREPGPL---PGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 D---vd~~~~~l~~~G~~i~~~p~~~---~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
| +++++++++++|+++..++... .++ ++++||+|||||.||++..+
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKV-KAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCc-ceEEEEECcCCCEEEEEEee
Confidence 5 9999999999999987765321 222 46789999999999998765
No 113
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.52 E-value=4.3e-13 Score=112.69 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=83.3
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 331 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD 331 (384)
+++||.|.|+|++++++||+++|||++...... . .+.++..+ ......+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRD-PDEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEec-CCCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999998654321 1 22333332 112445555543222111234578899999987
Q ss_pred HH---HHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 332 VY---KTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 332 vd---~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
++ ++++++.++|+++..++. .++ ++.+|++||+||.|||+...+
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~ 122 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTP 122 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCC
Confidence 65 578999999998876542 232 478999999999999998653
No 114
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.52 E-value=2e-13 Score=112.88 Aligned_cols=109 Identities=29% Similarity=0.482 Sum_probs=78.7
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCce
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 193 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 193 (384)
++.|+.|.|+|+++++ +||+++|||++....+ + .+++..+ . ..+.+...... ....+..
T Consensus 1 ~i~hv~l~v~d~~~~~--------~FY~~vLG~~~~~~~~--~----~~~~~~~--~--~~~~l~~~~~~---~~~~~~~ 59 (121)
T cd07244 1 GINHITLAVSDLERSV--------AFYVDLLGFKLHVRWD--K----GAYLEAG--D--LWLCLSVDANV---GPAKDYT 59 (121)
T ss_pred CcceEEEEECCHHHHH--------HHHHHhcCCEEEEecC--C----ceEEecC--C--EEEEEecCCCC---CCCCCee
Confidence 4789999999999999 9999999999865432 1 2344432 1 22333221111 1235788
Q ss_pred EEEEEE--CCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 194 HFGIAV--EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 194 hi~~~v--~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
|++|.+ +|+++++++|+++|+++..++.. ....+||+|||||+|||.+..
T Consensus 60 hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 60 HYAFSVSEEDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred eEEEEeCHHHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 999998 57999999999999998654432 235789999999999998753
No 115
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3.3e-13 Score=110.98 Aligned_cols=113 Identities=28% Similarity=0.386 Sum_probs=80.8
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCC------CCcC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD------KYDI 188 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~------~~~~ 188 (384)
+.||+|.|.|+++++ +||+++|||++..+ +++. .+++..+.. ..+.+....... ....
T Consensus 1 ~~~~~l~v~d~~~s~--------~Fy~~~lG~~~~~~---~~~~--~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~ 64 (122)
T cd08354 1 ILETALYVDDLEAAE--------AFYEDVLGLELMLK---EDRR--LAFFWVGGR---GMLLLFDPGATSTPGGEIPPHG 64 (122)
T ss_pred CeEEEEEeCCHHHHH--------HHHHhccCCEEeec---CCCc--eEEEEcCCC---cEEEEEecCCcccccCCCCCCC
Confidence 478999999999999 99999999998754 2222 455555432 233333221110 1122
Q ss_pred CCCceEEEEEEC--CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 189 GTGFGHFGIAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 189 g~g~~hi~~~v~--Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
..+..|++|.++ |++++++++.++|+++...+. ..++.+.+|++||||++||+++
T Consensus 65 ~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 65 GSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQ--WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred CCCccEEEEEcCHHHHHHHHHHHHhcCCceecccc--CCCCeeEEEEECCCCCEEEEec
Confidence 357889999984 799999999999999876543 2345567899999999999986
No 116
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3.9e-13 Score=111.27 Aligned_cols=116 Identities=24% Similarity=0.325 Sum_probs=84.1
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc-cccCCCceeEEEEEcC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT-EYDKGNGYAQIAIGTD 330 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~-~~~~g~g~~hiaf~Vd 330 (384)
+++||.|.|.|++++++||+++|||++.... + . ...+..+. ....+.+....... ......+..|++|.|+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 5789999999999999999999999997552 1 1 23344322 24556665533221 1223457889999996
Q ss_pred ---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 331 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 331 ---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
++++++++++++|+++.. +...+. ++.+||+|||||.|||.....
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 589999999999998754 333333 478999999999999987654
No 117
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.51 E-value=2.1e-13 Score=110.84 Aligned_cols=109 Identities=24% Similarity=0.399 Sum_probs=77.1
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEE
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 196 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 196 (384)
||.|.|+|+++++ +||+++|||++..+.+ ..+++..+ ...+.+....... ..+.++.|++
T Consensus 1 Hv~l~v~d~~~s~--------~Fy~~~lg~~~~~~~~------~~~~~~~~----~~~l~~~~~~~~~--~~~~~~~hia 60 (113)
T cd08345 1 HITLIVKDLNKSI--------AFYRDILGAELIYSSS------KEAYFELA----GLWICLMEEDSLQ--GPERTYTHIA 60 (113)
T ss_pred CeeEEECCHHHHH--------HHHHHhcCCeeeeccC------ceeEEEec----CeEEEeccCCCcC--CCCCCccEEE
Confidence 8999999999999 9999999999865431 12344432 2233333221111 1235778999
Q ss_pred EEEC--CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 197 IAVE--DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 197 ~~v~--Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
|.|+ |+++++++++++|+++...+... .+.++.+|++|||||+||+...
T Consensus 61 f~v~~~d~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 61 FQIQSEEFDEYTERLKALGVEMKPERPRV-QGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred EEcCHHHHHHHHHHHHHcCCccCCCcccc-CCCceEEEEECCCCCEEEEEeC
Confidence 9995 79999999999999987543222 2345688999999999999853
No 118
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.51 E-value=4.6e-13 Score=108.30 Aligned_cols=109 Identities=27% Similarity=0.360 Sum_probs=80.0
Q ss_pred eeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHHH
Q 016689 257 MLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTA 336 (384)
Q Consensus 257 ~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~~ 336 (384)
.|.|+|++++++||+++|||++..... +..+ .++..+ +..+.+......... ...+..|++|.|+|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 688999999999999999999875542 1222 334322 345555543322111 3456679999999999999
Q ss_pred HHHHHCCCe-EecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 337 EAIKLSGGK-ITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 337 ~~l~~~G~~-i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
++++++|++ +..++...+++ .+.++++||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 66666655554 378999999999999975
No 119
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=3.1e-13 Score=112.15 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=77.6
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCC-----Cccc--cCCCceeEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG-----VTEY--DKGNGYAQI 325 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~-----~~~~--~~g~g~~hi 325 (384)
+.+|.|.|.|+++|++||++ |||+.......+. ...+..+ + ...+.+..... .... ....+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 46899999999999999976 9999764332222 2222221 1 23344432110 0000 123455799
Q ss_pred EEEcC---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 326 AIGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 326 af~Vd---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
+|.|+ |+++++++++++|+++..+|...++ ++.+||+|||||.||++.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99997 5889999999999999988876665 467899999999999974
No 120
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=4.6e-13 Score=110.68 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=80.1
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhc---cCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTEC---LGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTG 191 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g 191 (384)
+.|+.|.|+|+++|+ +||+++ |||++..+. . +. .+++..+. ....+.+......... ...+
T Consensus 1 l~hv~l~v~d~~~s~--------~FY~~~f~~lg~~~~~~~--~-~~--~~~~~~~~--~~~~~~l~~~~~~~~~-~~~~ 64 (123)
T cd07262 1 IDHVTLGVNDLERAR--------AFYDAVLAPLGIKRVMED--G-PG--AVGYGKGG--GGPDFWVTKPFDGEPA-TAGN 64 (123)
T ss_pred CcEEEEecCcHHHHH--------HHHHHHHhhcCceEEeec--C-Cc--eeEeccCC--CCceEEEeccccCCCC-CCCC
Confidence 579999999999999 999998 699886442 1 11 23333221 2334555443221111 2234
Q ss_pred ceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccC--CCEEEEEEECCCCCEEEEe
Q 016689 192 FGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 192 ~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~iel~ 244 (384)
..|++|.|+| +++++++++++|+++..+|...+. +..+.+|++|||||.|||+
T Consensus 65 ~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 65 GTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 5799999997 788999999999999887765543 3455789999999999996
No 121
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=4.1e-13 Score=110.43 Aligned_cols=114 Identities=24% Similarity=0.305 Sum_probs=79.2
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc------cccCCCceeEEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT------EYDKGNGYAQIA 326 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~------~~~~g~g~~hia 326 (384)
+.+|.|.|.|++++++||+++|||++..+ ++..+ .++..+.. ..+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGGR---GMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCCC---cEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998753 12222 33333321 223332211110 111234778999
Q ss_pred EEc--CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 327 IGT--DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 327 f~V--dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
|.| +|++++++++.++|+++..++. .+++ ++.+||+|||||.||++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~~-~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPRG-GRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCCC-eeEEEEECCCCCEEEEecC
Confidence 998 5899999999999999876554 2322 5889999999999999863
No 122
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.51 E-value=6.2e-13 Score=109.64 Aligned_cols=120 Identities=26% Similarity=0.329 Sum_probs=90.0
Q ss_pred CCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc
Q 016689 250 PEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 250 ~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V 329 (384)
+..+.|..|.|.|++++++||+++|||+.....+..+..+..+.... ... ...+.-.. ...+++..+++.|.|
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~-gG~l~~~~-----~~~p~~~~~~iy~~v 79 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGA-GGGLMARP-----GSPPGGGGWVIYFAV 79 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccc-cceeccCC-----cCCCCCCCEEEEEec
Confidence 46789999999999999999999999998765444334443332221 111 22221111 122235668999999
Q ss_pred CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 330 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 330 dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+|++++.+++.++|++++.++.+.|++ ++++.|.||+||.|.|.+..
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 999999999999999999999988864 69999999999999998754
No 123
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.50 E-value=4.9e-13 Score=109.14 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=83.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC-
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD- 330 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd- 330 (384)
+++|+.|.|.|++++++||+++|||++..+.. .. .++..+. ..+..+.+... ...+..|++|.|+
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GS--VYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----Ce--EEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 58999999999999999999999999875431 12 2333321 12444544432 1246789999997
Q ss_pred --CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 --DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 --Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+++++.++++++|+++...|...+++ ++.+||+||+||.||++...
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEcc
Confidence 68899999999999998877644544 58899999999999998754
No 124
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=5.5e-13 Score=108.71 Aligned_cols=108 Identities=28% Similarity=0.354 Sum_probs=78.7
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc-ccCCCceeEEEEEcCC---
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE-YDKGNGYAQIAIGTDD--- 331 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~-~~~g~g~~hiaf~VdD--- 331 (384)
+.|.|.|+++|++||+++||+++.... ..+..+... + ...+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999976432 223332222 1 23445544332211 1223467899999975
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
+++++++++++|+++..+|...++ ++.++|+|||||.||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 888999999999999988877666 46789999999999986
No 125
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.50 E-value=7e-13 Score=107.81 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=79.7
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEE
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 196 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 196 (384)
+..|.|+|+++++ +||+++|||++... .+ ..+++..+. ..++.+.+..... .+....|++
T Consensus 3 ~~~l~v~Dl~~s~--------~FY~~~lG~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~ 62 (112)
T cd07238 3 VPNLPVADPEAAA--------AFYADVLGLDVVMD----HG--WIATFASPQ-NMTVQVSLATEGG-----TATVVPDLS 62 (112)
T ss_pred cceEecCCHHHHH--------HHHHHhcCceEEEc----CC--ceEEEeecC-CCCcEEEEecCCC-----CCCCCCEEE
Confidence 3578999999999 99999999998532 11 234444322 2234455442211 123456999
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 197 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 197 ~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
|.|+|+++++++|+++|+++..+|....+ +.+.+|+.|||||+|++++++
T Consensus 63 ~~v~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~~ 112 (112)
T cd07238 63 IEVDDVDAALARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTHR 112 (112)
T ss_pred EEeCCHHHHHHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEcC
Confidence 99999999999999999999887765543 446779999999999999763
No 126
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.50 E-value=8.4e-13 Score=107.34 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=79.1
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHH
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 335 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~ 335 (384)
..|.|+|++++++||+++|||+.... .+ . ...+.... ..+..+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 47889999999999999999998532 11 1 22233222 1234455543211 123456999999999999
Q ss_pred HHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 336 AEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 336 ~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
++++++.|+++..+|...+++ .+.+|++|||||.|+|.++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 999999999998887766654 3789999999999999975
No 127
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.49 E-value=5.3e-13 Score=107.43 Aligned_cols=108 Identities=24% Similarity=0.285 Sum_probs=75.7
Q ss_pred EEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEEEEE
Q 016689 120 YRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIAV 199 (384)
Q Consensus 120 l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~~~v 199 (384)
|.|+|+++++ +||+++|||++....+ . .+.+..+.........+.... .......+..|++|.|
T Consensus 1 l~v~d~~~a~--------~FY~~~lg~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v 64 (108)
T PF12681_consen 1 LPVSDLEAAA--------AFYEDVLGFEVVFDDP----D--YVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEV 64 (108)
T ss_dssp EEESSHHHHH--------HHHHHTTTSEEEEEET----S--EEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEE
T ss_pred CccCCHHHHH--------HHHHHhcCCEEEEeCC----C--eEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEE
Confidence 6899999999 9999999999987321 2 233333211101122232221 1222356888999999
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 200 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 200 ~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
+|+++++++++++|+++..+|...++ +.+.+++.|||||+|||+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 99999999999999999888776544 567899999999999986
No 128
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.49 E-value=4.5e-13 Score=108.82 Aligned_cols=108 Identities=21% Similarity=0.328 Sum_probs=75.7
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc--CCH
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT--DDV 332 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V--dDv 332 (384)
||.|.|+|++++++||+++|||++..+.+ . ... +..+ ...+.+....... ....+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~--~~~~----~~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAY--FELA----GLWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeE--EEec----CeEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 79999999999999999999999864431 1 111 2211 2344443322111 1234678999999 579
Q ss_pred HHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 333 YKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 333 d~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
++++++++++|+++...+...+.. ++.+|++|||||.||+..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQGE-GRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCCC-ceEEEEECCCCCEEEEEe
Confidence 999999999999986543222222 578999999999999985
No 129
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.49 E-value=5e-13 Score=109.77 Aligned_cols=112 Identities=26% Similarity=0.398 Sum_probs=82.3
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc-
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT- 329 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V- 329 (384)
.+|+|+.|.|+|++++++||+++|||+...... .+. ++..+. ...+.+.+... ..++..|++|.|
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~v~ 67 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIV--YLRATG-SEHHILRLRRS-------DRNRLDVVSFSVA 67 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEE--EEECCC-CccEEEEeccC-------CCCCCceEEEEeC
Confidence 368999999999999999999999999864321 232 333221 22344444321 124678999999
Q ss_pred --CCHHHHHHHHHHCCCeEecCCccC--CCCCceEEEEECCCCCeEEEEecC
Q 016689 330 --DDVYKTAEAIKLSGGKITREPGPL--PGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 330 --dDvd~~~~~l~~~G~~i~~~p~~~--~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+++++++++++++|+++..+|... +++ ++.++|+||+||.|||+...
T Consensus 68 ~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 68 SRADVDALARQVAARGGTVLSEPGATDDPGG-GYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCceecCCcccCCCCC-ceEEEEECCCCCEEEEEecc
Confidence 578999999999999998776433 333 57899999999999998754
No 130
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.49 E-value=9.4e-13 Score=106.46 Aligned_cols=109 Identities=28% Similarity=0.332 Sum_probs=79.3
Q ss_pred EEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEEEE
Q 016689 119 VYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGIA 198 (384)
Q Consensus 119 ~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~~~ 198 (384)
.|.|+|+++++ +||+++|||++..... .. ..+++..+ +..+.+......... ...+..|++|.
T Consensus 3 ~i~v~d~~~s~--------~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~ 65 (112)
T cd08349 3 VLPVSDIERSL--------AFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIE 65 (112)
T ss_pred EEEECCHHHHH--------HHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEE
Confidence 68999999999 9999999999876542 12 24555532 345555443222211 23466689999
Q ss_pred ECCHHHHHHHHHHcCCe-eeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 199 VEDVAKTVDLVKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 199 v~Dv~~~~~~l~~~G~~-~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
++|+++++++++++|++ +..++.... ++.+.++++||+|+.|||+|
T Consensus 66 ~~~~~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 66 VEDVDALYAELKAKGADLIVYPPEDQP-WGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred eCCHHHHHHHHHHcCCcceecCccCCC-cccEEEEEECCCCCEEEecC
Confidence 99999999999999999 555555444 34567889999999999976
No 131
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.48 E-value=5.7e-13 Score=110.05 Aligned_cols=113 Identities=24% Similarity=0.341 Sum_probs=74.7
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecC-C----CCCCcCCCC
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY-G----VDKYDIGTG 191 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~-~----~~~~~~g~g 191 (384)
||.|.|+|+++++ +||+++|||++..... . .+.+..+ +....+.+.... . ........+
T Consensus 2 Hi~l~v~Dl~~s~--------~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~ 65 (125)
T cd08357 2 HLAIPVRDLEAAR--------AFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVP 65 (125)
T ss_pred eEEEEeCCHHHHH--------HHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccC
Confidence 9999999999999 9999999999854321 1 2223221 112222222111 0 000111235
Q ss_pred ceEEEE--EECCHHHHHHHHHHcCCeeeeCCcccc---CCCEEEEEEECCCCCEEEEee
Q 016689 192 FGHFGI--AVEDVAKTVDLVKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 192 ~~hi~~--~v~Dv~~~~~~l~~~G~~~~~~p~~~~---~g~~~~~~~~DPdG~~iel~~ 245 (384)
..|+++ .++|+++++++|+++|+++..+|.... .+..+.+|++|||||+|||..
T Consensus 66 ~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 66 VPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred CceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 667654 568999999999999999987765432 234678899999999999964
No 132
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.48 E-value=6.5e-13 Score=109.61 Aligned_cols=108 Identities=20% Similarity=0.217 Sum_probs=76.3
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHH
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 334 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~ 334 (384)
...|.|.|+++|++||++ |||++..+... . ++.+..+ +..+.+...... .......|++|.|+|+++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~ 71 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAA 71 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHH
Confidence 357899999999999999 99998654321 2 3334332 345555543211 112234689999999999
Q ss_pred HHHHHHHCCCeEe-------cCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 335 TAEAIKLSGGKIT-------REPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 335 ~~~~l~~~G~~i~-------~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
++++++++|+++. .+|...+++ .+.++|+|||||.|||.|.
T Consensus 72 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 72 LHAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 9999999999853 233333454 4889999999999999985
No 133
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=1e-12 Score=108.63 Aligned_cols=114 Identities=24% Similarity=0.235 Sum_probs=79.2
Q ss_pred ceeeeeecCChHHHHHHHHHh---hCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc
Q 016689 253 LCQVMLRVGDLDRAINFYKKA---FGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V 329 (384)
+.||.|.|+|+++|++||+++ ||+++..+. .+ .+ +.+.... ....+.+..+...... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~~--~~~~~~~--~~~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-GA--VGYGKGG--GGPDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-ce--eEeccCC--CCceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999999 588876432 11 11 2233221 2344555443221111 223456999999
Q ss_pred CC---HHHHHHHHHHCCCeEecCCccCCC--CCceEEEEECCCCCeEEEE
Q 016689 330 DD---VYKTAEAIKLSGGKITREPGPLPG--INTKITACLDPDGWKSVFV 374 (384)
Q Consensus 330 dD---vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~~~DPdG~~iElv 374 (384)
++ +++++++++++|+++..+|...++ ...+.+||+|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999998887766553 2245789999999999997
No 134
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.48 E-value=8.3e-13 Score=107.67 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=74.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
++|+||+|.|.|+++++ +||+ .|||++..+. + ...+...+ ..+..+.+... ...+.
T Consensus 1 ~~i~hv~l~v~d~~~s~--------~FY~-~lG~~~~~~~---~---~~~~~~~~--~~~~~~~~~~~-------~~~~~ 56 (112)
T cd08344 1 HSIDHFALEVPDLEVAR--------RFYE-AFGLDVREEG---D---GLELRTAG--NDHRWARLLEG-------ARKRL 56 (112)
T ss_pred CceeEEEEecCCHHHHH--------HHHH-HhCCcEEeec---C---ceEEEecC--CCceEEEeecC-------CCCce
Confidence 36999999999999999 9997 6999986432 1 12233322 22333444321 12234
Q ss_pred eE--EEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 193 GH--FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 193 ~h--i~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
.| +.+.++|+++++++|+++|+++..++. + +..+.+||+|||||+|||....
T Consensus 57 ~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~--~-~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 57 AYLSFGIFEDDFAAFARHLEAAGVALAAAPP--G-ADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred eeEEEEeEhhhHHHHHHHHHHcCCceecCCC--c-CCCCEEEEECCCCCEEEEecCC
Confidence 45 455568999999999999999876652 2 2334689999999999998643
No 135
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.48 E-value=1.4e-12 Score=107.31 Aligned_cols=113 Identities=24% Similarity=0.305 Sum_probs=79.5
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC--
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 331 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD-- 331 (384)
.|+.|.|+|++++++||+++||++...+. + . +..+... + ....+.+..+... ..++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~--~-~-~~~~~~~-~---~~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR--D-D-YAKFLLE-D---PRLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc--C-C-eeEEEec-C---CceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 58999999999999999999999875442 1 1 2222222 1 1233333332111 11578899999987
Q ss_pred -HHHHHHHHHHCCCeEecCCccCC-CCCceEEEEECCCCCeEEEEecCc
Q 016689 332 -VYKTAEAIKLSGGKITREPGPLP-GINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 332 -vd~~~~~l~~~G~~i~~~p~~~~-~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+++++++++++|+++..+|.... ++.++.+|++||+||.|||+...+
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~~ 119 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTLG 119 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEeec
Confidence 78899999999999887664332 222478999999999999998653
No 136
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.48 E-value=2.5e-13 Score=109.30 Aligned_cols=108 Identities=26% Similarity=0.365 Sum_probs=75.7
Q ss_pred eecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHHHH
Q 016689 258 LRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAE 337 (384)
Q Consensus 258 L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~~~ 337 (384)
|.|+|++++++||+++|||++..... .+.....+. ........+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGF--RFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETE--EEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEecc--chhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999986322 222222211 0001112222211 112235678899999999999999
Q ss_pred HHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 338 AIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 338 ~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
+++++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999888876664 48999999999999985
No 137
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.47 E-value=1.1e-12 Score=104.32 Aligned_cols=112 Identities=32% Similarity=0.426 Sum_probs=84.3
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEE
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 196 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 196 (384)
|+++.|+|+++++ +||+++|||++...... .....+++..+ +..+++...........+.+..|++
T Consensus 1 Hi~i~~~d~~~~~--------~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~ 66 (112)
T cd06587 1 HVGLTVSDLEAAV--------AFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLA 66 (112)
T ss_pred CcceeeCCHHHHH--------HHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEE
Confidence 8999999999999 99999999998766432 12245555543 3466665543322223456788999
Q ss_pred EEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEE
Q 016689 197 IAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 197 ~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel 243 (384)
|.|+|+++++++|+++|+.+...+.. ..++...+++.||+|+.|||
T Consensus 67 ~~v~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 67 FEVDDVDAAYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred EECCCHHHHHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 99999999999999999998876642 23456788999999999985
No 138
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.47 E-value=1.8e-12 Score=106.66 Aligned_cols=112 Identities=27% Similarity=0.413 Sum_probs=79.0
Q ss_pred eEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEE
Q 016689 116 LHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 195 (384)
Q Consensus 116 ~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 195 (384)
.|+.|.|+|+++++ +||+++||++..... + + ...|...+ ....+.+...... ..++..|+
T Consensus 3 ~hv~l~v~d~~~a~--------~FY~~~lG~~~~~~~--~-~--~~~~~~~~---~~~~~~~~~~~~~----~~~~~~h~ 62 (120)
T cd07254 3 FHVALNVDDLEASI--------AFYSKLFGVEPTKVR--D-D--YAKFLLED---PRLNFVLNERPGA----PGGGLNHL 62 (120)
T ss_pred EEEEEEeCCHHHHH--------HHHHHHhCCeEeccc--C-C--eeEEEecC---CceEEEEecCCCC----CCCCeeEE
Confidence 59999999999999 999999999875442 1 1 12333221 1233333322111 11588999
Q ss_pred EEEECC---HHHHHHHHHHcCCeeeeCCcccc-CCCEEEEEEECCCCCEEEEeecC
Q 016689 196 GIAVED---VAKTVDLVKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 196 ~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~-~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+|.|+| +++++++|+++|+++...|.... .+..+.+|++|||||+|||++..
T Consensus 63 ~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 63 GVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 999988 78899999999999887654332 22356789999999999999753
No 139
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.46 E-value=6.5e-13 Score=109.63 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCC-----CccccCCCceeEEEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG-----VTEYDKGNGYAQIAI 327 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~-----~~~~~~g~g~~hiaf 327 (384)
++||.|.|.|+++|++||++ |||++...... ..+ ..+..+. ...+.+..... ........+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~--~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPH--VEAVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCc--EEEEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999975 99997533211 111 1122111 12222221100 000112334568888
Q ss_pred EcC---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 328 GTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 328 ~Vd---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
.++ |+++++++++++|+++..+|...+++ .+.++|+|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 764 89999999999999998888777765 37899999999999996
No 140
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.46 E-value=1.7e-12 Score=103.38 Aligned_cols=112 Identities=31% Similarity=0.440 Sum_probs=83.5
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHH
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK 334 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~ 334 (384)
|+.+.|.|++++++||+++||++....... ......++..+ +..+.+...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 789999999999999999999998765432 12344445432 456666654332211235678899999999999
Q ss_pred HHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 335 TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 335 ~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
+.++++++|+.+..++....+ .++.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREEPW-GGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCCCC-CcEEEEEECCCCcEEeC
Confidence 999999999998877652222 25899999999999986
No 141
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.46 E-value=1.3e-12 Score=106.74 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=78.1
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD 331 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD 331 (384)
++.|+.|.|+|++++++||++ |||++..+. .+ . +++..+.. ....+.+.. ...+++.|++|.|+|
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~--~~--~--~~~~~~~~-~~~~~~~~~-------~~~~~~~~~af~v~~ 67 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAART--DD--E--LYYRGYGT-DPFVYVARK-------GEKARFVGAAFEAAS 67 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEec--CC--e--EEEecCCC-ccEEEEccc-------CCcCcccEEEEEECC
Confidence 689999999999999999999 999986542 11 1 23332211 123332221 113577899999999
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
.+++.+.+++.|+++..++. .+++ ++.+||+|||||.|||+..
T Consensus 68 ~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 68 RADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 99999999999998775443 3443 4789999999999999764
No 142
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.46 E-value=1.3e-12 Score=107.93 Aligned_cols=109 Identities=25% Similarity=0.345 Sum_probs=77.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEc--
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGT-- 329 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~V-- 329 (384)
++.||.|.|+|++++++||+++|||++....+ + . .++..+ ...+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~--~--~~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K--G--AYLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C--c--eEEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 47899999999999999999999999864432 1 1 122222 12233322111 12245678999998
Q ss_pred CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 330 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 330 dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+|+++++++++++|+++..++.. + ++.+||+|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~-~---~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS-E---GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC-C---ccEEEEECCCCCEEEEEeCC
Confidence 68999999999999998755432 2 36899999999999998743
No 143
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.45 E-value=1.5e-12 Score=107.97 Aligned_cols=113 Identities=24% Similarity=0.227 Sum_probs=77.0
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCC-----C-CCC-c
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG-----V-DKY-D 187 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~-----~-~~~-~ 187 (384)
+.+|.|.|+|+++++ +||++ |||++......+ . .+++..++ ...+.+..... . ... .
T Consensus 1 ~~~v~l~V~Dl~~s~--------~FY~~-lGf~~~~~~~~~--~--~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~ 64 (124)
T cd09012 1 MIFINLPVKDLEKST--------AFYTA-LGFEFNPQFSDE--K--AACMVISD---NIFVMLLTEDFFQTFTPKPIADT 64 (124)
T ss_pred CEEEEeecCCHHHHH--------HHHHH-CCCEEccccCCC--C--eEEEEECC---ceEEEEEcHHHHhhccCCCcccC
Confidence 468999999999999 99976 999976432221 1 12232221 23444432110 0 100 1
Q ss_pred CCCCceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 188 IGTGFGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 188 ~g~g~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
.+.+..|++|.|+ |+++++++++++|+++..+|...+ ..+.+|++|||||+||++.
T Consensus 65 ~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 65 KKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 2345679999998 588999999999999988776554 3456799999999999975
No 144
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.45 E-value=1.1e-12 Score=108.28 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=73.3
Q ss_pred eeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCC---c-c-ccCCCceeEEE--E
Q 016689 255 QVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGV---T-E-YDKGNGYAQIA--I 327 (384)
Q Consensus 255 hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~---~-~-~~~g~g~~hia--f 327 (384)
||.|.|+|+++|++||+++|||++..... .+ ..+.... ....+.+...... . . .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--ccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999854321 11 1222111 1222222211100 0 0 01112345665 5
Q ss_pred EcCCHHHHHHHHHHCCCeEecCCccCC-C--CCceEEEEECCCCCeEEEEe
Q 016689 328 GTDDVYKTAEAIKLSGGKITREPGPLP-G--INTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~~i~~~p~~~~-~--~~~~~~~~~DPdG~~iElve 375 (384)
.++|+++++++|+++|+++..+|.... + +.++.+||+|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 678999999999999999987775321 1 22488999999999999974
No 145
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.44 E-value=2.3e-12 Score=106.30 Aligned_cols=108 Identities=21% Similarity=0.168 Sum_probs=76.0
Q ss_pred EEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEE
Q 016689 117 HVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFG 196 (384)
Q Consensus 117 Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 196 (384)
...|.|+|+++|+ +||++ |||++..+... ..+++..+ ...+.+....... ......|++
T Consensus 5 ~~~l~v~Dl~~s~--------~FY~~-lG~~~~~~~~~-----~~~~~~~~----~~~l~l~~~~~~~---~~~~~~~~~ 63 (120)
T cd08350 5 IPNLPSRDLDATE--------AFYAR-LGFSVGYRQAA-----GYMILRRG----DLELHFFAHPDLD---PATSPFGCC 63 (120)
T ss_pred cceeEcCCHHHHH--------HHHHH-cCCEEEecCCC-----CEEEEEcC----CEEEEEEecCcCC---CCCCcceEE
Confidence 3589999999999 99999 99998754321 23444433 2355555432211 112335799
Q ss_pred EEECCHHHHHHHHHHcCCeee-------eCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 197 IAVEDVAKTVDLVKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 197 ~~v~Dv~~~~~~l~~~G~~~~-------~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
|.|+|+++++++|+++|+++. .++...+ .+.+.++++|||||+|||.|.
T Consensus 64 ~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 64 LRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQP-WGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred EEeCCHHHHHHHHHHhCccccccCCCcccCCcCCC-CceeEEEEECCCCCEEEeecC
Confidence 999999999999999999853 2333222 456788999999999999884
No 146
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=104.49 Aligned_cols=122 Identities=26% Similarity=0.313 Sum_probs=88.8
Q ss_pred ccccceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCC-CCccEEEEEEecCCCCCCc
Q 016689 109 KSDKRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGP-EDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 109 ~~~~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~lel~~~~~~~~~~ 187 (384)
.++...+.|..|.|+|+++++ +||.++|||+.....+..+. ..+.+..+. ...+. +... +...
T Consensus 4 ~~~~~~i~w~Ei~~~D~~ra~--------~FY~~vFgW~~~~~~~~~~~--~y~~f~~~~~~~gG~---l~~~---~~~~ 67 (127)
T COG3324 4 AGEKGTIVWFELPVSDLERAK--------AFYEKVFGWTFEDYFDMGEM--RYAVFPADGAGAGGG---LMAR---PGSP 67 (127)
T ss_pred cccCCccEEEeeecCCHHHHH--------HHHHHhhCceecccccCCCc--eEEEEECCCccccce---eccC---CcCC
Confidence 455668999999999999999 99999999998765444333 333443221 22221 1111 1111
Q ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 188 IGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 188 ~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
++.+..++.|.|+|++++.+|++++|+++++++.+.++ .++++.+.||+||+|.|++..
T Consensus 68 p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 68 PGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCCCCEEEEEecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeecC
Confidence 22344568999999999999999999999999988874 677888999999999998754
No 147
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.43 E-value=2.6e-12 Score=106.01 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=75.2
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecC-----CCCCCcCC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNY-----GVDKYDIG 189 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~-----~~~~~~~g 189 (384)
|+||.|.|+|+++|+ +||+. |||++...... ...+.+..+. ...+.+.... .......+
T Consensus 1 ~~~i~l~V~D~~~a~--------~FY~~-LGf~~~~~~~~----~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~ 64 (122)
T cd07235 1 LDAVGIVVADMAKSL--------DFYRR-LGFDFPEEADD----EPHVEAVLPG---GVRLAWDTVESIRSFTPGWTPTG 64 (122)
T ss_pred CceEEEEeccHHHHH--------HHHHH-hCceecCCcCC----CCcEEEEeCC---CEEEEEEcccceeeecCCCCCCC
Confidence 579999999999999 99975 99997533211 1123333221 1222221110 01111123
Q ss_pred CCceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 190 TGFGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 190 ~g~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
.+..|++|.+. |+++++++|+++|+++..+|...+. +.+.++++|||||.|||+
T Consensus 65 ~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 65 GHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPW-GQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCC-CCEEEEEECCCCCEEEEe
Confidence 35567888865 7999999999999998887766654 446788999999999996
No 148
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=4.4e-12 Score=103.31 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=77.2
Q ss_pred EEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCC-CCcCCCCceEEE
Q 016689 118 VVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD-KYDIGTGFGHFG 196 (384)
Q Consensus 118 v~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~-~~~~g~g~~hi~ 196 (384)
+.|.|+|+++++ +||+++|||++.... ..+. .+..+. ...+.+....... ......+..|++
T Consensus 2 ~~l~v~d~~~a~--------~FY~~~lg~~~~~~~----~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 64 (114)
T cd07261 2 VLLYVEDPAASA--------EFYSELLGREPVELS----PTFA--LFVLGS---GVKLGLWSRHTVEPASDATGGGSELA 64 (114)
T ss_pred EEEEECCHHHHH--------HHHHHHcCCCccCCC----CceE--EEEeCC---CcEEEEeeccccCCCCCCCCCceEEE
Confidence 679999999999 999999999976431 2232 233211 2344554332221 112345778999
Q ss_pred EEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 197 IAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 197 ~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
|.|+| +++++++++++|+++..+|...+.| +.++|+|||||+|||+
T Consensus 65 ~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 65 FMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 99986 8889999999999999887666543 4678999999999986
No 149
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=8.2e-13 Score=117.41 Aligned_cols=119 Identities=37% Similarity=0.713 Sum_probs=102.9
Q ss_pred CCCCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCC-----------CcEEEEEeecCCCCcceEEEEeccCCCcccc
Q 016689 249 TPEPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPD-----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYD 317 (384)
Q Consensus 249 ~~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~ 317 (384)
...++-|+.+.|.|.++++.||+++|||++.+..++++ ++|+-.|+++++++.|+++||++++++..+.
T Consensus 14 ~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Ye 93 (299)
T KOG2943|consen 14 DTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYE 93 (299)
T ss_pred cchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcccee
Confidence 34588999999999999999999999999998877765 6778899999999999999999999999999
Q ss_pred CCCceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 318 KGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 318 ~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
-|+++.||.+.++|+-..++.+..-|.+ ..+ .-++++.||||+.+++++.
T Consensus 94 lGndfg~i~I~s~dv~~~ve~v~~p~~~--------~~g-~~~~~v~dPdGykF~l~~~ 143 (299)
T KOG2943|consen 94 LGNDFGGITIASDDVFSKVEKVNAPGGK--------GSG-CGIAFVKDPDGYKFYLIDR 143 (299)
T ss_pred ccCCcccEEEeHHHHHHHHHHhcCcCCc--------ccc-eEEEEEECCCCcEEEEecc
Confidence 9999999999999988888887765542 111 3568899999999999973
No 150
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=9.5e-13 Score=110.17 Aligned_cols=123 Identities=31% Similarity=0.414 Sum_probs=78.8
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCC---------------CCcceEEEEeccCCCccc
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGP---------------EDKNAVLELTYNHGVTEY 316 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~---------------~~~~~~lel~~~~~~~~~ 316 (384)
.+.|.++++.|+.+|..||++++|+.+......++..+...+++... ...+..++++++++....
T Consensus 22 ~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~ 101 (170)
T KOG2944|consen 22 LLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESP 101 (170)
T ss_pred hhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCC
Confidence 35666666666666666666666665554332221111111111100 012567888888776432
Q ss_pred -----cC----CCceeEEEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 317 -----DK----GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 317 -----~~----g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
.+ +.|.+||||+|+|++++.+++++.|+++...|.+ |..-.++++.||||+.|||...
T Consensus 102 ~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~d--Gk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 102 PDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKD--GKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCC--ccccceeEEECCCCCeEEEeec
Confidence 12 2389999999999999999999999997765432 2212679999999999999864
No 151
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.40 E-value=7.6e-12 Score=102.56 Aligned_cols=111 Identities=22% Similarity=0.213 Sum_probs=76.4
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCC------CccccCCCceeEEEEEc
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHG------VTEYDKGNGYAQIAIGT 329 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~------~~~~~~g~g~~hiaf~V 329 (384)
|.|.|.|++++.+||+++|||++..+. +..+. ++..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~~~--~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDGVA--FFQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCceE--EEEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 689999999999999999999986541 12232 23321 34454443211 11111222334566654
Q ss_pred ---CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 330 ---DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 330 ---dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
+|++++++++++.|+++..+|...+++ ++.++++||+||.|||..+
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~~ 121 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAHN 121 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEeeC
Confidence 689999999999999998887766654 5889999999999999753
No 152
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.39 E-value=8.2e-12 Score=101.75 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=73.1
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeE--EEEEc
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQ--IAIGT 329 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~h--iaf~V 329 (384)
.+.||.|.|.|++++++||+ .|||++..+. + . ..+...+. .+..+.+.... ..+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~-~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--G-LELRTAGN--DHRWARLLEGA-------RKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--c-eEEEecCC--CceEEEeecCC-------CCceeeEEEEeEh
Confidence 58999999999999999997 6999986432 1 1 12222111 23344443211 223344 45556
Q ss_pred CCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 330 DDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 330 dDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
+|+++++++++++|+++..++ .+.+ .+.+||+|||||.|||...
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--PGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--CcCC-CCEEEEECCCCCEEEEecC
Confidence 899999999999999987665 2222 3578999999999999853
No 153
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.38 E-value=5.6e-12 Score=102.55 Aligned_cols=95 Identities=27% Similarity=0.335 Sum_probs=76.8
Q ss_pred eEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC--CcCCCCce
Q 016689 116 LHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK--YDIGTGFG 193 (384)
Q Consensus 116 ~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~g~~ 193 (384)
+||+|.|+|+++|+ +||+++||++.......+......+++..+.. ...+||.+...... ...+.|+.
T Consensus 1 dHv~i~V~Dl~~a~--------~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~ 70 (109)
T PF13669_consen 1 DHVGIVVPDLDAAA--------AFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIH 70 (109)
T ss_dssp EEEEEEES-HHHHH--------HHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEE
T ss_pred CEEEEEcCCHHHHH--------HHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEE
Confidence 69999999999999 99999999998776666666677777776532 26889887655432 23678999
Q ss_pred EEEEEECCHHHHHHHHHHcCCeeeeCC
Q 016689 194 HFGIAVEDVAKTVDLVKAKGGKVTREP 220 (384)
Q Consensus 194 hi~~~v~Dv~~~~~~l~~~G~~~~~~p 220 (384)
|+||.|+|++++.++|+++|+++..++
T Consensus 71 Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 71 HIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp EEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred EEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 999999999999999999999988764
No 154
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.36 E-value=1.4e-11 Score=100.74 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEEEE
Q 016689 118 VVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHFGI 197 (384)
Q Consensus 118 v~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~~ 197 (384)
..|.|+|+++|+ +||++ |||++.... . ..+++..+ ...+.+....... . .+-.+++|
T Consensus 5 ~~l~v~Dl~~s~--------~FY~~-LGf~~~~~~----~--~~~~l~~~----~~~l~l~~~~~~~-~---~~~~~~~~ 61 (113)
T cd08356 5 PFIPAKDFAESK--------QFYQA-LGFELEWEN----D--NLAYFRLG----NCAFYLQDYYVKD-W---AENSMLHL 61 (113)
T ss_pred eccccccHHHHH--------HHHHH-hCCeeEecC----C--CEEEEEcC----CEEEEeecCCCcc-c---ccCCEEEE
Confidence 468899999999 99987 999997653 1 24556543 2233333211111 1 22347899
Q ss_pred EECCHHHHHHHHHHcCCeeee-----CCccccCCCEEEEEEECCCCCEEEEee
Q 016689 198 AVEDVAKTVDLVKAKGGKVTR-----EPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 198 ~v~Dv~~~~~~l~~~G~~~~~-----~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
.|+|+++++++|+++|+++.. ++...+ .+.+.++++|||||+|+|.|
T Consensus 62 ~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~-~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 62 EVDDLEAYYEHIKALGLPKKFPGVKLPPITQP-WWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred EECCHHHHHHHHHHcCCcccccceecCccccC-CCcEEEEEECCCccEEEeeC
Confidence 999999999999999987532 233222 35678899999999999864
No 155
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.35 E-value=1.4e-11 Score=100.75 Aligned_cols=104 Identities=20% Similarity=0.159 Sum_probs=72.0
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHHH
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKT 335 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~ 335 (384)
..|.|+|+++|++||++ |||++..+. ..+ .++..+ ...+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~~--~~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN----DNL--AYFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC----CCE--EEEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 46889999999999987 999997542 123 334432 233334321111 112345789999999999
Q ss_pred HHHHHHCCCeEe-----cCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 336 AEAIKLSGGKIT-----REPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 336 ~~~l~~~G~~i~-----~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
+++|+++|+++. .++...+++ .+.++|+|||||.|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 999999998743 233333444 489999999999999864
No 156
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.32 E-value=3.6e-11 Score=98.51 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=75.4
Q ss_pred EEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCC------CCCCcCCCC
Q 016689 118 VVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG------VDKYDIGTG 191 (384)
Q Consensus 118 v~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~------~~~~~~g~g 191 (384)
|.|.|.|++++. +||+++|||++..+ ++. ..+++..+ ...+++..... ......+.+
T Consensus 2 i~l~v~d~~~a~--------~FY~~~lg~~~~~~---~~~--~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~ 64 (121)
T cd07251 2 ITLGVADLARSR--------AFYEALLGWKPSAD---SND--GVAFFQLG----GLVLALFPREELAKDAGVPVPPPGFS 64 (121)
T ss_pred eeEeeCCHHHHH--------HHHHHhcCceeccc---CCC--ceEEEEcC----CeEEEEecchhhhhhcCCCCCCCCcc
Confidence 689999999999 99999999998654 122 23445432 23455543211 111112223
Q ss_pred ceEEEEEE---CCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 192 FGHFGIAV---EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 192 ~~hi~~~v---~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
..|+++.+ +|+++++++++++|+++..++...+. +++.++++||+||+||+..
T Consensus 65 ~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 65 GITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFW-GGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCC-CceEEEEECCCCCEEEEee
Confidence 34566655 57999999999999999877765543 4677889999999999974
No 157
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.28 E-value=1.9e-11 Score=99.33 Aligned_cols=95 Identities=23% Similarity=0.277 Sum_probs=75.7
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccc--cCCCceeEEEEEcCC
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY--DKGNGYAQIAIGTDD 331 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~--~~g~g~~hiaf~VdD 331 (384)
+||.|.|+|+++|++||+++||++.......+.......++..+.. ...+||.++...... ..+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 6999999999999999999999998776666666667666665432 267888876554322 467899999999999
Q ss_pred HHHHHHHHHHCCCeEecCC
Q 016689 332 VYKTAEAIKLSGGKITREP 350 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p 350 (384)
++++.++++++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987653
No 158
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.26 E-value=5.5e-10 Score=105.38 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=138.9
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCC------
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDK------ 185 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------ 185 (384)
..++.+|.+.|.|.+.+. .=|-..|||+...+.-.. -..+|-. | + +.+.-+..+..
T Consensus 20 ~~GfeFvEf~~~d~~~~l--------~~l~~~lGF~~~~~Hrsk---~v~l~rQ-G--d----inlvvn~~~~s~a~~f~ 81 (363)
T COG3185 20 TDGFEFVEFAVPDPQEAL--------GALLGQLGFTAVAKHRSK---AVTLYRQ-G--D----INLVVNAEPDSFAAEFL 81 (363)
T ss_pred CCceeEEEEecCCHHHHH--------HHHHHHhCcccccccccc---ceeEEEe-C--C----EEEEEcCCCcchhhHHH
Confidence 458999999999995555 455567999976543211 1222222 1 1 12222211111
Q ss_pred CcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCc-----ccc---CCCEEEEEEECCCCC-E---EEEeec--CCCC-
Q 016689 186 YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG-----PVK---GGNTVIAFIEDPDGY-K---FELLER--GPTP- 250 (384)
Q Consensus 186 ~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~-----~~~---~g~~~~~~~~DPdG~-~---iel~~~--~~~~- 250 (384)
...|++..-++|.|+|.+.++++..+.|.+....+. .++ +-++..+||.|.+|. - .++... ...+
T Consensus 82 ~~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~ 161 (363)
T COG3185 82 DKHGPSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASG 161 (363)
T ss_pred HhcCCchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCccccccccccccccccc
Confidence 235677888999999999999999999995443321 111 223446788888831 1 122211 1111
Q ss_pred ----CCceeeeeec--CChHHHHHHHHHhhCCeEeeeecCCCCc---EEEEEeecCCCCcceEEEEeccCCCcc------
Q 016689 251 ----EPLCQVMLRV--GDLDRAINFYKKAFGMELLRKRDNPDYK---YTIAVMGYGPEDKNAVLELTYNHGVTE------ 315 (384)
Q Consensus 251 ----~~~~hV~L~V--~Dle~s~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lel~~~~~~~~------ 315 (384)
..++|+...| ..++.+..||+++|||+.....+.++.. .+-++.. ......|.+........
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S---p~G~vrlplN~s~~~~sqi~efl 238 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS---PCGKVRLPLNESADDKSQIGEFL 238 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec---CCCcEEeecccCCCchhHHHHHH
Confidence 2689998776 5899999999999999998777655432 1222222 12234444443222221
Q ss_pred -ccCCCceeEEEEEcCCHHHHHHHHHHCCCeEecCCc
Q 016689 316 -YDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITREPG 351 (384)
Q Consensus 316 -~~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~ 351 (384)
...|.|++||||.++||.++++++++.|+++...|.
T Consensus 239 ~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 239 REYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred HHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 135789999999999999999999999999988774
No 159
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.07 E-value=1.3e-09 Score=97.80 Aligned_cols=99 Identities=26% Similarity=0.399 Sum_probs=73.7
Q ss_pred ceeeEEEEEeC--CHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC--CceEEEEEeeCCCCccEEEEEEecCCC-C---
Q 016689 113 RRMLHVVYRVG--DLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE--DRYTNAFLGYGPEDSHFVVELTYNYGV-D--- 184 (384)
Q Consensus 113 ~~i~Hv~l~V~--Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~-~--- 184 (384)
.+++||++.|+ |+++++ +||+++|||+.....+.++ .......+... .....++|...... .
T Consensus 2 ~~iDHv~i~V~~~dl~~a~--------~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~ 71 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWV--------DFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQ 71 (191)
T ss_pred ceeeEEEeecChhHHHHHH--------HHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccH
Confidence 47999999999 999999 9999999999877654433 23334445432 23456666543321 1
Q ss_pred -----CCcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCc
Q 016689 185 -----KYDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 221 (384)
Q Consensus 185 -----~~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~ 221 (384)
....|.|+.|+||.|+|+++++++|+++|+++...|.
T Consensus 72 ~~~fl~~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 72 IQEFLEYYGGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred HHHHHHHhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 1234789999999999999999999999999887664
No 160
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.06 E-value=1.2e-09 Score=97.90 Aligned_cols=98 Identities=24% Similarity=0.367 Sum_probs=74.4
Q ss_pred CceeeeeecC--ChHHHHHHHHHhhCCeEeeeecCCC--CcEEEEEeecCCCCcceEEEEeccCCC--c-------cccC
Q 016689 252 PLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPD--YKYTIAVMGYGPEDKNAVLELTYNHGV--T-------EYDK 318 (384)
Q Consensus 252 ~~~hV~L~V~--Dle~s~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~lel~~~~~~--~-------~~~~ 318 (384)
+++||.+.|. |++++++||+++|||+.......++ .......+..+. ....+++..+... . ....
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 5899999999 9999999999999999887654433 234444454322 3566777764431 1 1134
Q ss_pred CCceeEEEEEcCCHHHHHHHHHHCCCeEecCCc
Q 016689 319 GNGYAQIAIGTDDVYKTAEAIKLSGGKITREPG 351 (384)
Q Consensus 319 g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~~p~ 351 (384)
++|++||||.|+|+++++++++++|+++..+|.
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 789999999999999999999999999988774
No 161
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.02 E-value=3.7e-09 Score=83.89 Aligned_cols=119 Identities=31% Similarity=0.346 Sum_probs=76.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCC---CC-CcC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGV---DK-YDI 188 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~---~~-~~~ 188 (384)
+.+-|.++.|.|+++++ +||.++||++.-+..+ .++-+..- .+...+.+...... .+ ...
T Consensus 3 ~~~FHLA~pV~Dl~~tr--------~FYgevlG~~~GRstd------~wvdfDfy--GHQ~v~Hl~~q~~~~~~g~V~~~ 66 (138)
T COG3565 3 PVPFHLAIPVNDLDETR--------RFYGEVLGCKEGRSTD------TWVDFDFY--GHQVVAHLTPQPDSQGSGKVDGH 66 (138)
T ss_pred ccceEEeeeccccHHHH--------hhhhhhcccccccccc------eEEEeeec--ccEEEEEecCCcccccCcccCCC
Confidence 45789999999999999 9999999999754432 22322221 11222223221110 00 111
Q ss_pred CCCceEEE--EEECCHHHHHHHHHHcCCeeeeCCccc-c--CCCEEEEEEECCCCCEEEEeecC
Q 016689 189 GTGFGHFG--IAVEDVAKTVDLVKAKGGKVTREPGPV-K--GGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 189 g~g~~hi~--~~v~Dv~~~~~~l~~~G~~~~~~p~~~-~--~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+--.-|++ +.++|--++.++|+++|+...-+|.-. + .|..+.+|+.||.||.+|+-.-+
T Consensus 67 ~v~~pHfGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 67 GVPPPHFGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred CCCCccceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 22334544 457799999999999999877665322 2 25678899999999999996543
No 162
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.95 E-value=7.5e-09 Score=83.60 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=75.9
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEecc-C-CCc----cccCCCceeEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYN-H-GVT----EYDKGNGYAQI 325 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~-~-~~~----~~~~g~g~~hi 325 (384)
....|.|.|.|+++|++||+. |||+......++... ...... .-.++-|... . ... .......-..|
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a~--~mi~~~----ni~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDAA--CMIISD----NIFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccccce--eEEEec----cEEEEEeccHHhhhhcccccccccCCceEEE
Confidence 356789999999999999965 999987665444322 221221 1222222221 0 000 01223455688
Q ss_pred EEEcC---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 326 AIGTD---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 326 af~Vd---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
++.+. ++|+..+++.++|++...+|.+... .+...|+|||||.||++-
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 89884 6899999999999999777665433 355679999999999976
No 163
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.92 E-value=4.2e-08 Score=82.01 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=72.1
Q ss_pred eeec-CChHHHHHHHHHhhCCeEeeeecCC----------CCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEE
Q 016689 257 MLRV-GDLDRAINFYKKAFGMELLRKRDNP----------DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQI 325 (384)
Q Consensus 257 ~L~V-~Dle~s~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hi 325 (384)
-|.+ .|.++|++||+++||+++......+ .+.+....+..+ +..+-+......... ......++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4566 8999999999999999998654321 122222333322 223333322111111 12334588
Q ss_pred EEEcCC---HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 326 AIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 326 af~VdD---vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
++.|+| +++++++|.+.| ++..+|...+++ .+..+++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEe
Confidence 999886 777889987655 888888877776 4789999999999997
No 164
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.85 E-value=9.1e-09 Score=84.18 Aligned_cols=122 Identities=25% Similarity=0.413 Sum_probs=74.0
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCc---eEEEEEeeCCCCccEEEE--------EEecC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDR---YTNAFLGYGPEDSHFVVE--------LTYNY 181 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~---~~~~~l~~g~~~~~~~le--------l~~~~ 181 (384)
+++.||.+.|+|+++++ +||+++|||++.......... ....+............. .....
T Consensus 1 ~~l~hv~l~v~dl~~s~--------~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (138)
T COG0346 1 MGIHHVTLAVPDLEASI--------DFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVG 72 (138)
T ss_pred CceEEEEEeeCCHhHhH--------HHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeeccccccccccccc
Confidence 37899999999999999 999999999998765432221 112222211000000000 00000
Q ss_pred CCC-CCcCC-CCceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEee
Q 016689 182 GVD-KYDIG-TGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 245 (384)
Q Consensus 182 ~~~-~~~~g-~g~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~ 245 (384)
... ....+ .+..|+++.++| ...........|..+...+. .. ....+|++||||+.||+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~--~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 73 DVALGVPGGDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR--GGVHVYFRDPDGILIELAT 138 (138)
T ss_pred ceEEeecCchhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC--cceEEEEECCCCcEEEeeC
Confidence 000 01111 357799999998 66677777788888765433 21 1228899999999999964
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.84 E-value=1.6e-07 Score=78.93 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=82.2
Q ss_pred eeecC-ChHHHHHHHHHhhCCeEeeeecCCC----------CcEEEEEeecCCCCcceEEEEeccCCCccccCC-CceeE
Q 016689 257 MLRVG-DLDRAINFYKKAFGMELLRKRDNPD----------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKG-NGYAQ 324 (384)
Q Consensus 257 ~L~V~-Dle~s~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g-~g~~h 324 (384)
-|..+ |.++|++||+++||.++..+....+ +...-..+..+ ...+-+...........+ +.-..
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 35566 9999999999999999987766554 23333333332 222323222211112222 23457
Q ss_pred EEEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 325 IAIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 325 iaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
|.+.++|++++.+++.+.|+++..++....++ .++..++||.|+.|-|....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCc
Confidence 77888899999999999999999999988887 48899999999999998755
No 166
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.83 E-value=5.4e-08 Score=85.95 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=86.1
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCC---C---CC---
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYG---V---DK--- 185 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~---~---~~--- 185 (384)
|+|+++.|+|++++. ++|++.|||++......+..+..+..+.++. . .||+....+ . ..
T Consensus 1 lDH~v~~v~dl~~a~--------~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~---~-YlEli~i~~~~~~~~~~~~~~ 68 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAV--------ERFEQRLGFTVTPGGEHPGWGTANALIPFGD---G-YLELIAIDPEAPAPDRGRWFG 68 (175)
T ss_dssp EEEEEEE-TTGGG------------GGGS--S--EEEEE-TTT-EEEEEEE-SS---S-EEEEEEES-HHHSTGGGT-TT
T ss_pred CCEEEEEcCCHHHHH--------HhhhhcceEeecCCCcCCCCccEEEEEeeCC---c-eEEEEEeCCccccccccccee
Confidence 689999999999999 9998899999998877776555666666642 3 788865322 1 11
Q ss_pred ---CcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCC--EEEEEEECC----CCCEEEEeecCCC-C-----
Q 016689 186 ---YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGN--TVIAFIEDP----DGYKFELLERGPT-P----- 250 (384)
Q Consensus 186 ---~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~--~~~~~~~DP----dG~~iel~~~~~~-~----- 250 (384)
...+.|+.++|+.++|+++..++++++|+.... +...+++. ...++..|+ .+..-.+++..+. +
T Consensus 69 ~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h 147 (175)
T PF13468_consen 69 LDRLAGGEGLYGWALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARH 147 (175)
T ss_dssp THHHHT--EEEEEEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT
T ss_pred chhhcCCCCeEEEEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccC
Confidence 124679999999999999999999999986211 11111111 234455664 2455566654332 1
Q ss_pred ----CCceeeeeecCChHHHHHHHHHhh
Q 016689 251 ----EPLCQVMLRVGDLDRAINFYKKAF 274 (384)
Q Consensus 251 ----~~~~hV~L~V~Dle~s~~FY~~vL 274 (384)
..|.+|.+.++|.+++.++|.++|
T Consensus 148 ~ng~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 148 PNGALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp --TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred CCccceEEEEEEEeCCHHHHHHHHHhhC
Confidence 259999999999999999999875
No 167
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.81 E-value=1.9e-07 Score=77.96 Aligned_cols=111 Identities=11% Similarity=0.122 Sum_probs=72.2
Q ss_pred EEEEe-CCHHHHHhhcCCChhHHhhhccCCEEEeeeeCC----------CCceEEEEEeeCCCCccEEEEEEecCCCCCC
Q 016689 118 VVYRV-GDLDKTINSLGCGYCRFYTECLGMKLLRKRDIP----------EDRYTNAFLGYGPEDSHFVVELTYNYGVDKY 186 (384)
Q Consensus 118 v~l~V-~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~ 186 (384)
..|.+ .|.++|+ +||+++||+++......+ .+....+.+..+ +..+.+.........
T Consensus 3 p~L~~~~~~~eAi--------~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~ 70 (128)
T cd06588 3 PYLWFNGNAEEAL--------EFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF 70 (128)
T ss_pred eEEeeCCCHHHHH--------HHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC
Confidence 35677 9999999 999999999988765321 122334444443 123333222111111
Q ss_pred cCCCCceEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEE
Q 016689 187 DIGTGFGHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 187 ~~g~g~~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel 243 (384)
.+.+-.++++.|+| +++++++|++.| ++..++...+. +.+..+++||+|+.|+|
T Consensus 71 -~~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~-g~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 71 -TFGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFW-SPLFGWVTDRFGVSWQI 127 (128)
T ss_pred -CCCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCc-ccccEEEECCCCCEEEe
Confidence 12234468999887 667889987766 88777776654 45677899999999987
No 168
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.79 E-value=2.2e-08 Score=81.84 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=73.6
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCc---EEEEEeecCCCCcceEEEE--------eccCCCc-cccCC
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK---YTIAVMGYGPEDKNAVLEL--------TYNHGVT-EYDKG 319 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~lel--------~~~~~~~-~~~~g 319 (384)
.+.||.|.|+|+++|++||+++||+++.......... ....+.............. ....... .....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 5789999999999999999999999998665432221 1111111110000000000 0000000 01111
Q ss_pred -CceeEEEEEcCC---HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEe
Q 016689 320 -NGYAQIAIGTDD---VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVD 375 (384)
Q Consensus 320 -~g~~hiaf~VdD---vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve 375 (384)
.+..|+++.+++ ...........|..+...+. ... +..+||+||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 246899999988 66777777888888765443 223 238999999999999974
No 169
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.79 E-value=7.6e-08 Score=76.52 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=75.2
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccc--cCC----CceeEEE
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY--DKG----NGYAQIA 326 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~--~~g----~g~~hia 326 (384)
+-|+.+.|+|++++++||.++||.+.-++.+ .|+.+..-. .+.+..+......... -.+ ....-+.
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfyG--HQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvV 76 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFYG--HQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVV 76 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeecc--cEEEEEecCCcccccCcccCCCCCCCccceEE
Confidence 5689999999999999999999999865432 122222111 1222223222111110 011 1223345
Q ss_pred EEcCCHHHHHHHHHHCCCeEecCCccC----CCCCceEEEEECCCCCeEEEEecCc
Q 016689 327 IGTDDVYKTAEAIKLSGGKITREPGPL----PGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 327 f~VdDvd~~~~~l~~~G~~i~~~p~~~----~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
+.++|--++.++|+++|+....+|.-. ++- .+.+++.||.||.+|+-.-.+
T Consensus 77 l~~edW~alaerlea~gi~~~i~P~vRF~Ge~gE-q~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 77 LPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGE-QRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred EEHHHHHHHHHHHHHcCCCcccCceEEecCCccc-eEEEEEECCCCCeeeeecccc
Confidence 667888899999999999988887532 332 378999999999999976543
No 170
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.73 E-value=3.2e-07 Score=90.16 Aligned_cols=121 Identities=22% Similarity=0.249 Sum_probs=84.2
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCcc----c--cCCCceeEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTE----Y--DKGNGYAQI 325 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~----~--~~g~g~~hi 325 (384)
.++||.+.|+|++++++||.+.|||+........... ..+.+..+ ...+++..+..... + ..++++.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 5789999999999999999999999987652222222 22223322 45677765433221 1 357899999
Q ss_pred EEEcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 326 AIGTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 326 af~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
+|.|+|+++++++++++|++++.+|.....+.-+..-++-++|..+-|+++.
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~ 128 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRG 128 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCC
Confidence 9999999999999999999998877643111123444666777777777643
No 171
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.70 E-value=2e-07 Score=75.39 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=75.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEec--CC-----CCC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN--YG-----VDK 185 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~--~~-----~~~ 185 (384)
.++..|.|.|+|++++. +||+ .|||+.-.... +.. ....+-.+ ...+-|... +. +-.
T Consensus 2 ~~mIFvNLPVkDL~~S~--------~Fy~-alGfk~Npq~s--de~-a~~mi~~~----ni~vMLL~~~~fq~F~~~~i~ 65 (133)
T COG3607 2 TQMIFVNLPVKDLEASK--------AFYT-ALGFKFNPQFS--DED-AACMIISD----NIFVMLLEEARFQTFTKRQIA 65 (133)
T ss_pred ceEEEEecchhhHHHHH--------HHHH-HhCcccCCCcc--ccc-ceeEEEec----cEEEEEeccHHhhhhcccccc
Confidence 36778999999999999 9997 59999864432 221 22232211 222222211 00 001
Q ss_pred CcCCCCceEEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 186 YDIGTGFGHFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 186 ~~~g~g~~hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
......-.-+++.+. ++++++++..++|++...++.+. |..+...|.||||+.||++.-.+
T Consensus 66 dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~--gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 66 DTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDE--GFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred cccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCcccc--ccccceeeeCCCCCeEEEEEeCH
Confidence 111223334778776 48889999999999997776654 34555669999999999987543
No 172
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.70 E-value=9.9e-07 Score=74.11 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=80.6
Q ss_pred EEEeC-CHHHHHhhcCCChhHHhhhccCCEEEeeeeCCC----------CceEEEEEeeCCCCccEEEEEEecCCCCCCc
Q 016689 119 VYRVG-DLDKTINSLGCGYCRFYTECLGMKLLRKRDIPE----------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 119 ~l~V~-Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~ 187 (384)
-|.+. |-++|+ +||+++||.++..+...++ +....+-+..+ ...+-+....+.....
T Consensus 5 Yl~f~gn~~~Al--------~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~ 72 (136)
T COG2764 5 YLFFNGNAREAL--------AFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGAT 72 (136)
T ss_pred EEEECCCHHHHH--------HHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcc
Confidence 46677 999999 9999999999988776655 34444444443 1122222221111112
Q ss_pred CCC-CceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCC
Q 016689 188 IGT-GFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 248 (384)
Q Consensus 188 ~g~-g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~ 248 (384)
.++ .-.-+.+.++|++++++++.+.|+++..++....+| .++..++||.|+.|-|....+
T Consensus 73 ~~~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 73 EGGGTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred cCCCeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 222 222377778899999999999999999988777654 456679999999999976654
No 173
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.49 E-value=7.4e-07 Score=87.89 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=72.2
Q ss_pred cceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCC-----ceEEEEEeeCCCCccEEEEEEecCC---C
Q 016689 112 KRRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPED-----RYTNAFLGYGPEDSHFVVELTYNYG---V 183 (384)
Q Consensus 112 ~~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~lel~~~~~---~ 183 (384)
..+|+||++.|++++.++ .||+++|||+..+..+.++. ......+..+ .....++|..... .
T Consensus 178 l~~IDHi~iaV~~ld~a~--------~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v~ipLnEP~~~~~~ 247 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAV--------NYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMVLLPLNEPTFGTKR 247 (398)
T ss_pred cceeCcceechhhHHHHH--------HHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcEEEEeccCCCCCCC
Confidence 458999999999999999 99999999998765443221 1234444432 2245666654321 1
Q ss_pred -C------CCcCCCCceEEEEEECCHHHHHHHHHHc----CCeeeeCC
Q 016689 184 -D------KYDIGTGFGHFGIAVEDVAKTVDLVKAK----GGKVTREP 220 (384)
Q Consensus 184 -~------~~~~g~g~~hi~~~v~Dv~~~~~~l~~~----G~~~~~~p 220 (384)
. ....|.|+.||||.++|+.+++++|+++ |+++...|
T Consensus 248 ~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 248 KSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred cChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 1 1345689999999999999999999999 99988754
No 174
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=1.8e-06 Score=82.58 Aligned_cols=106 Identities=25% Similarity=0.347 Sum_probs=72.3
Q ss_pred CCceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD 330 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd 330 (384)
....||.|.|.|+++|++||+++|++.. +.. +.. ..+ + +....+-+.+. .........+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~---Fsd--e~a--~cm--~--dtI~vMllt~~-----D~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC---WDG--DKL--FLL--G--KTSLYLQQTKA-----EKKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC---CCC--Ccc--ccc--c--CcEEEEEecCC-----CCCCcceEEEEeccC
Confidence 4688999999999999999999988874 211 111 112 1 12333333332 112334567888886
Q ss_pred ---CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 331 ---DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 331 ---Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
++|+.+++..++|++...+|.++.. .--|+|||||.||++-.
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 5889999999999977665554433 34689999999999853
No 175
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.36 E-value=6.1e-07 Score=83.51 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=84.1
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEe--ccCCCcc-----ccCCCceeE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELT--YNHGVTE-----YDKGNGYAQ 324 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~--~~~~~~~-----~~~g~g~~h 324 (384)
+++||.+.|.|..+++.||+..|||+.....+.+.+...+........ ..++.+. ++++... ..+|.++--
T Consensus 17 ~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkd 94 (381)
T KOG0638|consen 17 RFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGVKD 94 (381)
T ss_pred eeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccchhc
Confidence 699999999999999999999999999865433221111111111011 1222222 2222211 135678889
Q ss_pred EEEEcCCHHHHHHHHHHCCCeEecCCccCCCC--CceEEEEECCCCCeEEEEecCcc
Q 016689 325 IAIGTDDVYKTAEAIKLSGGKITREPGPLPGI--NTKITACLDPDGWKSVFVDNLDF 379 (384)
Q Consensus 325 iaf~VdDvd~~~~~l~~~G~~i~~~p~~~~~~--~~~~~~~~DPdG~~iElve~~~f 379 (384)
+||+|+|.+++.+.+.++|+++..+|...... .-+++.++.+.-....+++..++
T Consensus 95 vafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y 151 (381)
T KOG0638|consen 95 VAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGY 151 (381)
T ss_pred eEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccc
Confidence 99999999999999999999999998765332 23677788877666666665543
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=3e-06 Score=81.08 Aligned_cols=106 Identities=19% Similarity=0.319 Sum_probs=71.2
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGF 192 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~ 192 (384)
-+.-||+|.|+|+++|+ +||+++||+.. .. ++. . +-+ + +.-+.+-++.. +.. ...-
T Consensus 246 ~~~IfVNLpV~DL~rS~--------~FYt~LF~~n~-Fs----de~-a-~cm--~--dtI~vMllt~~---D~~--~~~e 301 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAK--------KFYSKMFGLEC-WD----GDK-L-FLL--G--KTSLYLQQTKA---EKK--NRGT 301 (357)
T ss_pred CceEEEEeeeCCHHHHH--------HHHHHHhCCCC-CC----CCc-c-ccc--c--CcEEEEEecCC---CCC--Ccce
Confidence 46889999999999999 99999988874 22 211 1 111 1 22222222322 111 1233
Q ss_pred eEEEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 193 GHFGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 193 ~hi~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.-+|+.+++ +++++++..++|++...++.++. . .--|.||||+.||++..
T Consensus 302 vLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~G--f--~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 302 TTLSLELECEHDFVRFLRRWEMLGGELGEQADGHF--P--LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred EEEEeccCCHHHHHHHHHHHHHcCCCCCCCccccc--C--cceeECCCCCEEEEEEE
Confidence 348888885 88899999999998766666553 2 33489999999999865
No 177
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.33 E-value=2.5e-05 Score=63.15 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=63.8
Q ss_pred eEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEE
Q 016689 116 LHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 195 (384)
Q Consensus 116 ~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 195 (384)
.+-+|+|.|-+..+ +||++.|||+++.... ..++++.......+.+|-.............-++++
T Consensus 2 ~~PvlRVnnR~~ni--------~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~i 67 (125)
T PF14506_consen 2 IIPVLRVNNRDLNI--------DFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRI 67 (125)
T ss_dssp EEEEEEESSHHHHH--------HHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEE
T ss_pred cCceEEEcCHHHhH--------HHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEE
Confidence 46789999999999 9999999999986542 367777543333444443322222233344578899
Q ss_pred EEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeec
Q 016689 196 GIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 246 (384)
Q Consensus 196 ~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~ 246 (384)
.+.|++..+ .+.|.++|.++.. -..+..++.+-..+|+|.+|.+...
T Consensus 68 vIkv~~~~E-Ie~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 68 VIKVPNPKE-IEALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp EEEESSHHH-HHHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--
T ss_pred EEEcCCHHH-HHHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEc
Confidence 999999777 4555666665432 2333344555567999999988654
No 178
>PRK10148 hypothetical protein; Provisional
Probab=97.99 E-value=0.00038 Score=59.65 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=71.8
Q ss_pred eeec-CChHHHHHHHHHhhCCeEeeeec---CC-----------------CCcEEEEEeecCCCCcceEEEEeccCCCcc
Q 016689 257 MLRV-GDLDRAINFYKKAFGMELLRKRD---NP-----------------DYKYTIAVMGYGPEDKNAVLELTYNHGVTE 315 (384)
Q Consensus 257 ~L~V-~Dle~s~~FY~~vLG~~~~~~~~---~~-----------------~~~~~~~~l~~~~~~~~~~lel~~~~~~~~ 315 (384)
-|.. .|.++|++||+++||.++..... .+ ++.+....+..+ ...+-+..... ..
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~-~~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIP-SG 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCC-Cc
Confidence 3455 48999999999999998864431 10 122223333332 12232222110 01
Q ss_pred ccCCCceeEEEEEcCCHHH---HHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 316 YDKGNGYAQIAIGTDDVYK---TAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 316 ~~~g~g~~hiaf~VdDvd~---~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
...+ .-.++.+.++|.++ ++++| +.|+++..++.+.+++ .++..++||.|+.|.|...+
T Consensus 81 ~~~~-~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 81 KAHY-SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred CCCC-CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEecC
Confidence 1111 24578888888776 55666 5888999999888876 37899999999999998754
No 179
>PRK10148 hypothetical protein; Provisional
Probab=97.78 E-value=0.0017 Score=55.68 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=72.8
Q ss_pred EEEEe-CCHHHHHhhcCCChhHHhhhccCCEEEeeee---CC-----------------CCceEEEEEeeCCCCccEEEE
Q 016689 118 VVYRV-GDLDKTINSLGCGYCRFYTECLGMKLLRKRD---IP-----------------EDRYTNAFLGYGPEDSHFVVE 176 (384)
Q Consensus 118 v~l~V-~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~---~~-----------------~~~~~~~~l~~g~~~~~~~le 176 (384)
.-|.. .|.++|+ +||+++||.++..... .+ ++....+-+..+ ...+-
T Consensus 5 pyL~f~g~a~eAi--------~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm 72 (147)
T PRK10148 5 PYLSFAGNCADAI--------AYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIM 72 (147)
T ss_pred EEEEeCCCHHHHH--------HHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEE
Confidence 45566 4899999 9999999998764431 11 123334444443 11222
Q ss_pred EEecCCCCCCcCCCCceEEEEEECCHHH---HHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCC
Q 016689 177 LTYNYGVDKYDIGTGFGHFGIAVEDVAK---TVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 250 (384)
Q Consensus 177 l~~~~~~~~~~~g~g~~hi~~~v~Dv~~---~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~ 250 (384)
+... .+.....++ -.++++.++|+++ ++++| +.|+++..++.+..+ +.++..++||.|+.|.|...+..|
T Consensus 73 ~sD~-~~~~~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~w-g~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 73 MSDA-IPSGKAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFW-AHGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred EECC-CCCcCCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcch-hhccEEEECCCCCEEEEEecCCCC
Confidence 2211 111111222 3467888889776 55666 688999988877664 445778999999999998765443
No 180
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.66 E-value=0.00017 Score=68.80 Aligned_cols=96 Identities=25% Similarity=0.393 Sum_probs=69.7
Q ss_pred ceeeEEEEEeC--CHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCc---eEEEEEeeCCCCccEEEEEEecCCCCC--
Q 016689 113 RRMLHVVYRVG--DLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDR---YTNAFLGYGPEDSHFVVELTYNYGVDK-- 185 (384)
Q Consensus 113 ~~i~Hv~l~V~--Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~---~~~~~l~~g~~~~~~~lel~~~~~~~~-- 185 (384)
..|+|++..|. .++.+. .||+++|||+.....++++.. .+-+..+ |.+ .+.+.-|...+.
T Consensus 166 ~~IDHl~~nv~~~~md~w~--------~FY~~if~~~~~~~fdi~~p~tgl~Sram~S--p~G---~vrlplN~s~~~~s 232 (363)
T COG3185 166 TAIDHLTHNVKAGQMDTWV--------LFYESLFGFREIQYFDIPGPITGLRSRAMVS--PCG---KVRLPLNESADDKS 232 (363)
T ss_pred eeechhhhhcchhhHHHHH--------HHHHHHhCccceeeEeccCCcccEEEeeEec--CCC---cEEeecccCCCchh
Confidence 47999998886 899999 999999999998877766532 2223332 212 233433322111
Q ss_pred -------CcCCCCceEEEEEECCHHHHHHHHHHcCCeeeeCCc
Q 016689 186 -------YDIGTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPG 221 (384)
Q Consensus 186 -------~~~g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~ 221 (384)
...|.|+.||+|.++|+-+++++++++|+++...|.
T Consensus 233 qi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 233 QIGEFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred HHHHHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 235689999999999999999999999999986554
No 181
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.54 E-value=0.0014 Score=53.09 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=61.9
Q ss_pred eeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc--cccCCCceeEEEEEcCC
Q 016689 254 CQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--EYDKGNGYAQIAIGTDD 331 (384)
Q Consensus 254 ~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~--~~~~g~g~~hiaf~VdD 331 (384)
.+-.|+|.|-+.-++||++.|||++..+.. .+++++.. .....+.+.+.++.. .....-.+.++.+.|++
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~ 73 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPN 73 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESS
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCC
Confidence 455899999999999999999999985532 23455543 334455555433322 12223478899999988
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
..++ +.|.++|.++.. -.-+-+|+.+-..+|+|..|.+....+
T Consensus 74 ~~EI-e~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 74 PKEI-EALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HHHH-HHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred HHHH-HHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcCC
Confidence 5443 455556655321 122333566778899999999987653
No 182
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.52 E-value=0.00091 Score=56.54 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=75.4
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCc--c--ccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVT--E--YDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~--~--~~~g~g~~hiaf 327 (384)
.+.+|++.++|.++...++ +.|||+...+- .+....++..+ ...+.+...+... . ...|+++.-++|
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~h--rsk~v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARH--RSKDVTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCE--CCCSEEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEec--CCcceEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 5889999999988888888 46999988653 23334443222 3344443322211 1 135789999999
Q ss_pred EcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecCc
Q 016689 328 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNLD 378 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~~ 378 (384)
.|+|..++++++.+.|.+...+|.. ++. -.+.-++-++|.++.|+++.+
T Consensus 80 rV~Da~~A~~rA~~~GA~~~~~~~~-~~e-~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 80 RVDDAAAAYERAVALGAEPVQEPTG-PGE-LNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EES-HHHHHHHHHHTT--EEEEEEE-TT--BEEEEEE-CCC-EEEEEE--S
T ss_pred EeCCHHHHHHHHHHcCCcCcccCCC-CCc-EeeeeEEccCCCEEEEEecCC
Confidence 9999999999999999988776532 221 367789999999999999764
No 183
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.49 E-value=0.0003 Score=61.94 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=51.0
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcE--EEEEeecCCCCcceEEEEeccCCCccc------------cC
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKY--TIAVMGYGPEDKNAVLELTYNHGVTEY------------DK 318 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~lel~~~~~~~~~------------~~ 318 (384)
|+|+.+.|+|++++.++|++.+||++......+..+. .+++++ ...||+......... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 6899999999999999998889999987776665222 334443 237777653211110 23
Q ss_pred CCceeEEEEEcCCHHHHHHHHHHCCCe
Q 016689 319 GNGYAQIAIGTDDVYKTAEAIKLSGGK 345 (384)
Q Consensus 319 g~g~~hiaf~VdDvd~~~~~l~~~G~~ 345 (384)
+.|...+++.++|+++..+++++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 678899999999999999999999986
No 184
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.16 E-value=0.0081 Score=50.80 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCC----CCcC
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVD----KYDI 188 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~----~~~~ 188 (384)
..+.||.+.|+|.+++. .++ +.|||+.+.+... +-..+| .-| + ..+-+....... ....
T Consensus 8 ~G~dFvEFa~~~~~~l~--------~~~-~~lGF~~~a~hrs---k~v~l~-rQG--~--I~~vln~ep~s~a~~~~~~H 70 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALA--------QLF-TALGFQPVARHRS---KDVTLY-RQG--D--INFVLNSEPDSFAAEFAAQH 70 (139)
T ss_dssp EEEEEEEEE-SSTTSCH--------HHH-CCCCEEEECCECC---CSEEEE-EET--T--EEEEEEEESTSCHHHHHHHH
T ss_pred CCeEEEEEecCCHHHHH--------HHH-HHhCcceEEecCC---cceEEE-EeC--C--EEEEEeCCCcchHHHHHHhc
Confidence 47999999999976666 766 5799998765421 112233 323 2 233333221111 1235
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCC
Q 016689 189 GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 249 (384)
Q Consensus 189 g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~ 249 (384)
|++..-++|.|+|.++++++..++|++...+|. ..+...+.-++.+.|.++-|+++...
T Consensus 71 G~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~--~~~e~~~paI~g~G~sl~yfVdr~~~ 129 (139)
T PF14696_consen 71 GPSVCAIAFRVDDAAAAYERAVALGAEPVQEPT--GPGELNIPAIRGIGGSLHYFVDRYGD 129 (139)
T ss_dssp SSEEEEEEEEES-HHHHHHHHHHTT--EEEEEE--ETT-BEEEEEE-CCC-EEEEEE--SS
T ss_pred CCEEEEEEEEeCCHHHHHHHHHHcCCcCcccCC--CCCcEeeeeEEccCCCEEEEEecCCC
Confidence 789999999999999999999999999877653 22345566789999999999998654
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.59 E-value=0.52 Score=38.54 Aligned_cols=96 Identities=20% Similarity=0.395 Sum_probs=53.5
Q ss_pred CCHHHHHhhcCCChhHHhhhccCC-EEEeeeeCCC------CceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCceEE
Q 016689 123 GDLDKTINSLGCGYCRFYTECLGM-KLLRKRDIPE------DRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFGHF 195 (384)
Q Consensus 123 ~Dl~~a~~~~~~~~~~FY~~~LG~-~~~~~~~~~~------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 195 (384)
.+.++|+ +||+++||- ++......++ +....+.+..+ +..+-.... + +....++++ .+
T Consensus 11 g~a~eA~--------~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~-~-~~~~~~~~~-sl 75 (116)
T PF06983_consen 11 GNAEEAL--------EFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDG-G-PDFPFGNNI-SL 75 (116)
T ss_dssp S-HHHHH--------HHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEE-S-TS----TTE-EE
T ss_pred CCHHHHH--------HHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECC-C-CCCCCCCcE-EE
Confidence 6899999 999999995 3333333332 22333344433 112222222 1 233334443 58
Q ss_pred EEEECCH---HHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEe
Q 016689 196 GIAVEDV---AKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 244 (384)
Q Consensus 196 ~~~v~Dv---~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~ 244 (384)
++.++|. ++++++|.+-|- ... .+..+.|.-|..|.|+
T Consensus 76 ~i~~~~~ee~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 76 CIECDDEEEIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEESSHHHHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred EEEcCCHHHHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 8899885 456788888775 123 5778999999999875
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=95.15 E-value=0.046 Score=43.35 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=42.2
Q ss_pred ceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC--
Q 016689 253 LCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 330 (384)
Q Consensus 253 ~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd-- 330 (384)
+..+.|+|+| +++.+||+++||-+.. ..+.+.....++ +.- +....=++..+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~D------L~~-----~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGPD------LTI-----ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---CC------GSS------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCCc------ccc-----CCCcEEeeEEEEEEecCc
Confidence 4568999999 8899999998873321 011111111000 000 0011126678889997
Q ss_pred -CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 331 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 331 -Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
|+.++.+++.+.+ +.-+ .. .+++.+.||+|..|.+
T Consensus 65 ~Dl~~L~~~le~~~--~fid-----Kk-~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQE--FFID-----KK-EKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS---EE-------TT--SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccc--eEec-----CC-ceEEEEECCcceEEEe
Confidence 6777888888733 2222 11 5889999999998876
No 187
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.03 E-value=0.66 Score=37.94 Aligned_cols=96 Identities=25% Similarity=0.334 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHhhCCeEe-eeecCCC------CcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCC--
Q 016689 261 GDLDRAINFYKKAFGMELL-RKRDNPD------YKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDD-- 331 (384)
Q Consensus 261 ~Dle~s~~FY~~vLG~~~~-~~~~~~~------~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdD-- 331 (384)
.+.++|.+||+++||-... .....++ .......+..+ +..+-.... + .....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D~-~-~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASDG-G-PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEEE-S-TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEECC-C-CCCCCCCc-EEEEEEcCCHH
Confidence 7999999999999995332 2222221 12222223221 122211111 1 22233344 577777776
Q ss_pred -HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEE
Q 016689 332 -VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFV 374 (384)
Q Consensus 332 -vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElv 374 (384)
+++++++|.+.|- +. +.+..++|.-|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 5567788887774 22 36789999999999886
No 188
>PF15067 FAM124: FAM124 family
Probab=94.74 E-value=0.22 Score=45.25 Aligned_cols=106 Identities=11% Similarity=0.142 Sum_probs=63.4
Q ss_pred CCceeeeeecC--ChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccc-cCCCceeEEEE
Q 016689 251 EPLCQVMLRVG--DLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEY-DKGNGYAQIAI 327 (384)
Q Consensus 251 ~~~~hV~L~V~--Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~-~~g~g~~hiaf 327 (384)
..+-.++|.|+ |.+.+++||+-+|+-+...... ++-++.+- ... +..+++.-..-+... .....-.-+.|
T Consensus 127 ~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~ly-s~~--~~~iQlsLK~lp~~~~p~p~esavLqF 199 (236)
T PF15067_consen 127 KEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTLY-SQP--GLDIQLSLKQLPPGMSPEPTESAVLQF 199 (236)
T ss_pred ccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEEe-cCC--CeEEEEEeccCCCCCCcccccceEEEE
Confidence 35778899998 9999999999999988754432 13222222 222 455555442221111 11223457899
Q ss_pred EcCCHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEE
Q 016689 328 GTDDVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVF 373 (384)
Q Consensus 328 ~VdDvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iEl 373 (384)
.|.|+-+++.-|-.-- .|.+ ...+-.+|||||.|-+
T Consensus 200 ~V~~igqLvpLLPnpc---------~PIS-~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 200 RVEDIGQLVPLLPNPC---------SPIS-ETRWQTEDYDGNKILL 235 (236)
T ss_pred EecchhhhcccCCCCc---------cccc-CCcceeeCCCCCEecc
Confidence 9999887765432111 1222 1336789999999853
No 189
>PF15067 FAM124: FAM124 family
Probab=93.57 E-value=0.57 Score=42.69 Aligned_cols=103 Identities=20% Similarity=0.311 Sum_probs=61.2
Q ss_pred eeeEEEEEeC--CHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEec---CCCCCCcC
Q 016689 114 RMLHVVYRVG--DLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYN---YGVDKYDI 188 (384)
Q Consensus 114 ~i~Hv~l~V~--Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~---~~~~~~~~ 188 (384)
.+.-+.+.|+ |.+.++ +||+-+|+-+...+.. ++ .+|.-+.. .+..+.+... .+..+..
T Consensus 128 EilRftly~~~~N~~d~v--------r~Yelil~~~~~~~k~----~F-C~F~lys~--~~~~iQlsLK~lp~~~~p~p- 191 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMV--------RFYELILQREPTQQKE----DF-CFFTLYSQ--PGLDIQLSLKQLPPGMSPEP- 191 (236)
T ss_pred cEEEEEEEecCCCHHHHH--------HHHHHHhccCcceeeC----Cc-EEEEEecC--CCeEEEEEeccCCCCCCccc-
Confidence 4777889999 999999 9999999988754321 12 23333322 2445555432 2222111
Q ss_pred CCCceEEEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEE
Q 016689 189 GTGFGHFGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 243 (384)
Q Consensus 189 g~g~~hi~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel 243 (384)
.--.-+.|.|.|+..++..|=.--..+. .+.| -.+|||||.|-|
T Consensus 192 -~esavLqF~V~~igqLvpLLPnpc~PIS--------~~rW--qT~D~DGNkILL 235 (236)
T PF15067_consen 192 -TESAVLQFRVEDIGQLVPLLPNPCSPIS--------ETRW--QTEDYDGNKILL 235 (236)
T ss_pred -ccceEEEEEecchhhhcccCCCCccccc--------CCcc--eeeCCCCCEecc
Confidence 1223488999999987755433222221 1222 379999999854
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=89.86 E-value=0.71 Score=36.66 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=41.3
Q ss_pred eeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEEEeeCCCCccEEEEEEecCCCCCCcCCCCce
Q 016689 114 RMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAFLGYGPEDSHFVVELTYNYGVDKYDIGTGFG 193 (384)
Q Consensus 114 ~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 193 (384)
.+.-+.|.|+| +++. +||+++||-++ + ....|.....++ ..+ ..+..-++.
T Consensus 5 ~~e~i~LNV~d-~~~~--------~fy~~~f~~~~------~---~~l~f~ea~G~D--L~~---------~~~~twDLe 55 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQ--------SFYQSIFGGQL------P---FFLTFQEAQGPD--LTI---------ENNETWDLE 55 (101)
T ss_dssp EE-EEEEEE-T--T-----------S--H---HHH------T---TTEEEEE---CC--GSS----------TTSBSSEE
T ss_pred EEEEEEEeCCC-hhHH--------HHHHhccccCC------C---ceEEEeeccCCc--ccc---------CCCcEEeeE
Confidence 46778999999 8899 99999886221 0 112222211000 000 011123566
Q ss_pred EEEEEEC---CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEE
Q 016689 194 HFGIAVE---DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFE 242 (384)
Q Consensus 194 hi~~~v~---Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~ie 242 (384)
-+-|.|+ |+.++.+++.+.+.-+- ....+..+.||++.-+-
T Consensus 56 ~Lkf~V~~~~Dl~~L~~~le~~~~fid--------Kk~k~l~~~Dps~IElW 99 (101)
T PF14507_consen 56 MLKFQVPKDFDLAALKSHLEEQEFFID--------KKEKFLVTSDPSQIELW 99 (101)
T ss_dssp EEEEEES-S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EEE
T ss_pred EEEEEecCcccHHHHHHHhcccceEec--------CCceEEEEECCcceEEE
Confidence 6888888 68888899888543221 13346778999986553
No 191
>PRK11700 hypothetical protein; Provisional
Probab=78.57 E-value=28 Score=30.83 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=45.3
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEE-E----eeCCCCccEEEEEEecCCCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAF-L----GYGPEDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~-l----~~g~~~~~~~lel~~~~~~~~~~ 187 (384)
..++|+.++|.+.+.|. +|.+..+-.-.......=.|+.-..| + ..++ ..-..+||.+... ..|
T Consensus 38 ~~~DHialR~n~~~tAe--------~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~-w~I~cvELP~P~~-k~Y- 106 (187)
T PRK11700 38 LEADHIALRCNQNETAE--------RWRQGFLQCGELLSENIINGRPICLFELDQPLQVGH-WSIDCVELPYPGE-KRY- 106 (187)
T ss_pred ccCcEEEEeeCCHHHHH--------HHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCC-cEEEEEEeCCCCC-CCC-
Confidence 46999999999999999 99887664422211111123321221 1 1121 1233567766433 333
Q ss_pred CCCCceEEEEEECC
Q 016689 188 IGTGFGHFGIAVED 201 (384)
Q Consensus 188 ~g~g~~hi~~~v~D 201 (384)
+-.|+.|+-+.++-
T Consensus 107 p~eGWEHIElVlp~ 120 (187)
T PRK11700 107 PHEGWEHIELVLPG 120 (187)
T ss_pred CCCCceEEEEEecC
Confidence 34699999999884
No 192
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=72.57 E-value=33 Score=30.47 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=44.8
Q ss_pred ceeeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEe-eeeCCCCceEEEEE----eeCCCCccEEEEEEecCCCCCCc
Q 016689 113 RRMLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLR-KRDIPEDRYTNAFL----GYGPEDSHFVVELTYNYGVDKYD 187 (384)
Q Consensus 113 ~~i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~-~~~~~~~~~~~~~l----~~g~~~~~~~lel~~~~~~~~~~ 187 (384)
..++|++++|.+.+.+. ++-+..+-.-... .....+.....+-+ .+++ ..-..+||.+..+ ..|
T Consensus 33 ~~~DHialRvn~~~~A~--------~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~-~~I~~vELP~P~~-K~Y- 101 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAE--------RWKQALLQCGELLSENMINGRPICLFKLNQPLQFGG-WSIDCVELPYPKD-KRY- 101 (185)
T ss_dssp -EEEEEEEE-S-HHHHH--------HHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETT-EEEEEEEEE---S-S---
T ss_pred cCCcEEEEecCCHHHHH--------HHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCC-eeEEEEEeCCCCC-CCC-
Confidence 46999999999999999 9998887654332 22232222111111 2221 2234567766433 333
Q ss_pred CCCCceEEEEEECC-HHHHHHHHHH
Q 016689 188 IGTGFGHFGIAVED-VAKTVDLVKA 211 (384)
Q Consensus 188 ~g~g~~hi~~~v~D-v~~~~~~l~~ 211 (384)
+-.|+.|+-+.++. .+...+++++
T Consensus 102 p~eGWEHIE~Vip~~~~~~~~~~~~ 126 (185)
T PF06185_consen 102 PQEGWEHIEFVIPSDAQTLLEQALQ 126 (185)
T ss_dssp SS-EEEEEEEE--S-GGGHHHHHHH
T ss_pred CCCCceEEEEEecCCHHHHHHHHHH
Confidence 34699999999984 3334444433
No 193
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=71.16 E-value=14 Score=27.95 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 201 DVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 201 Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
..+++.+.+++.|+.+..- ....++.+.+...|.||..+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~v--e~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREV--EFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEE--EEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 6888999999999976542 23234557778899999999997543
No 194
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=70.12 E-value=58 Score=27.76 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=44.1
Q ss_pred eeEEEEEeCCHHHHHhhcCCChhHHhhhccCCEEEeeeeCCCCceEEEE-E----eeCCCCccEEEEEEecCCCCCCcCC
Q 016689 115 MLHVVYRVGDLDKTINSLGCGYCRFYTECLGMKLLRKRDIPEDRYTNAF-L----GYGPEDSHFVVELTYNYGVDKYDIG 189 (384)
Q Consensus 115 i~Hv~l~V~Dl~~a~~~~~~~~~~FY~~~LG~~~~~~~~~~~~~~~~~~-l----~~g~~~~~~~lel~~~~~~~~~~~g 189 (384)
++|+.|+|.+.+.+. +|.+..+-.-.......=.++.-..| | ..++ ..-..+||.+... ..| +.
T Consensus 2 ~DHialR~n~~~~A~--------~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~-~~I~cvELP~P~~-k~Y-p~ 70 (149)
T cd07268 2 IDHIALRVNENQTAE--------RWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAG-WSISIVELPFPKD-KKY-PQ 70 (149)
T ss_pred CceEEEeeCCHHHHH--------HHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCC-cEEEEEEeCCCCC-CCC-CC
Confidence 689999999999999 99887764432221111123321221 1 1121 1233567766432 333 34
Q ss_pred CCceEEEEEECC
Q 016689 190 TGFGHFGIAVED 201 (384)
Q Consensus 190 ~g~~hi~~~v~D 201 (384)
.|+.|+-+.++-
T Consensus 71 eGWEHIE~Vlp~ 82 (149)
T cd07268 71 EGWEHIEIVIPS 82 (149)
T ss_pred CCceEEEEEecC
Confidence 699999999884
No 195
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.11 E-value=71 Score=27.13 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHhhCCeEee---eecC--C---CCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcC--
Q 016689 261 GDLDRAINFYKKAFGMELLR---KRDN--P---DYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTD-- 330 (384)
Q Consensus 261 ~Dle~s~~FY~~vLG~~~~~---~~~~--~---~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~Vd-- 330 (384)
.+.++|.+||.++|-=...- +... + .+++....+.... ...+.+..... ..++.... ..+-+.++
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g---~~f~~ld~g~~-~~f~fneA-~S~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNG---QSFMALDGGPN-TSFKFNEA-FSFQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECC---eEEEEEcCCCC-cCCCcCcc-EEEEEEcCCH
Confidence 89999999999988532221 1111 1 2222222222211 22222222111 01222122 23333444
Q ss_pred -CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEec
Q 016689 331 -DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDN 376 (384)
Q Consensus 331 -Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~ 376 (384)
.+|+++.+|.+.|.+. ....+++|-.|..|+|+-+
T Consensus 89 ~E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 89 EEIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 4888899999888621 2456899999999998753
No 196
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=61.92 E-value=89 Score=25.67 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCCCCceeeeeecCChHHHHHHHHHhhCCeEeee
Q 016689 202 VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFGMELLRK 281 (384)
Q Consensus 202 v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~ 281 (384)
+..+...|+++|+.+. .+.+.|. ..|.-+.+.|.+.+.+.+-.++ -||.+...
T Consensus 17 L~~~~~~L~eagINiR------------A~tiAdt--------------~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~ 69 (142)
T COG4747 17 LASVANKLKEAGINIR------------AFTIADT--------------GDFGIIRMVVDRPDEAHSVLEE-AGFTVRET 69 (142)
T ss_pred HHHHHHHHHHcCCceE------------EEEeccc--------------cCcceEEEEcCChHHHHHHHHH-CCcEEEee
Confidence 6778899999998753 1223332 3455577888899998888876 68877432
Q ss_pred ecCCCCcEEEEEeecCCC----------CcceEEEEeccCCCccccCCCceeEEEEEcCCHHHHHHHHHHCCCeEec
Q 016689 282 RDNPDYKYTIAVMGYGPE----------DKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYKTAEAIKLSGGKITR 348 (384)
Q Consensus 282 ~~~~~~~~~~~~l~~~~~----------~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~~~~~l~~~G~~i~~ 348 (384)
. +-.+.+...+. +...-++..+. +-....-..+-+.|+|+|++.+.|+++|+++..
T Consensus 70 d------VlaVEmeD~PG~l~~I~~vl~d~diNldYiYA-----Fv~ek~KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 70 D------VLAVEMEDVPGGLSRIAEVLGDADINLDYIYA-----FVTEKQKALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred e------EEEEEecCCCCcHHHHHHHHhhcCcCceeeee-----eeecCceEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 1 11111111110 01111111111 101112346778999999999999999998764
No 197
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=54.18 E-value=34 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 331 DVYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 331 Dvd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
.++++.+.+++.|.++..--.+..+ .+.+...|.||+.+|+.=++
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g--~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDG--CYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCC--EEEEEEEECCCCEEEEEEcC
Confidence 6899999999999865432211222 46788999999999997654
No 198
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.79 E-value=37 Score=23.55 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.7
Q ss_pred CceEEEEEECCHHHHHHHHHHcCCee
Q 016689 191 GFGHFGIAVEDVAKTVDLVKAKGGKV 216 (384)
Q Consensus 191 g~~hi~~~v~Dv~~~~~~l~~~G~~~ 216 (384)
+...+.+.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45668999999999999999999875
No 199
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=47.57 E-value=1.8e+02 Score=25.23 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=47.6
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCC------EEEE---------eecCCCC-C---Ccee
Q 016689 195 FGIAVEDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFEL---------LERGPTP-E---PLCQ 255 (384)
Q Consensus 195 i~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~------~iel---------~~~~~~~-~---~~~h 255 (384)
+=+.+.|.+++.++|++.|......-. ..-.|+..|++. .+.+ .-..|.. . .-.-
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 345678999999999999976543211 122344444421 1111 1111111 1 1223
Q ss_pred eeeecCChHHHHHHHHHhhCCeEeee
Q 016689 256 VMLRVGDLDRAINFYKKAFGMELLRK 281 (384)
Q Consensus 256 V~L~V~Dle~s~~FY~~vLG~~~~~~ 281 (384)
+.+.|.|.+...+.+. .||++....
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~~ 104 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVYE 104 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEEE
Confidence 6778899999999997 699997543
No 200
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.29 E-value=41 Score=24.95 Aligned_cols=41 Identities=15% Similarity=-0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCCC-ceEEEEECCCCCeEE
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGIN-TKITACLDPDGWKSV 372 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~~-~~~~~~~DPdG~~iE 372 (384)
+.++.+.+.+.|+.+....-...+.. ..+||++|++|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 67888999999999876543333322 357999999999873
No 201
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.77 E-value=54 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=21.2
Q ss_pred ceEEEEEE--CCHHHHHHHHHHcCCeeeeC
Q 016689 192 FGHFGIAV--EDVAKTVDLVKAKGGKVTRE 219 (384)
Q Consensus 192 ~~hi~~~v--~Dv~~~~~~l~~~G~~~~~~ 219 (384)
...+.|.+ +|.+.+.+.|+++|+++.++
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 33355555 48889999999999998764
No 202
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.75 E-value=59 Score=23.13 Aligned_cols=29 Identities=7% Similarity=0.050 Sum_probs=22.0
Q ss_pred ceeEEEEEc--CCHHHHHHHHHHCCCeEecC
Q 016689 321 GYAQIAIGT--DDVYKTAEAIKLSGGKITRE 349 (384)
Q Consensus 321 g~~hiaf~V--dDvd~~~~~l~~~G~~i~~~ 349 (384)
+...+.|.+ +|.+++.+.|++.|.++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 334455555 58889999999999998875
No 203
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.68 E-value=55 Score=22.60 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.8
Q ss_pred ceeEEEEEcCCHHHHHHHHHHCCCeE
Q 016689 321 GYAQIAIGTDDVYKTAEAIKLSGGKI 346 (384)
Q Consensus 321 g~~hiaf~VdDvd~~~~~l~~~G~~i 346 (384)
+...+.|.+++.+.+.+.|+++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 55678899999999999999999875
No 204
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=40.10 E-value=55 Score=31.49 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCCCceEEEEEE------CCHHHHHHHHHHcCCeee
Q 016689 188 IGTGFGHFGIAV------EDVAKTVDLVKAKGGKVT 217 (384)
Q Consensus 188 ~g~g~~hi~~~v------~Dv~~~~~~l~~~G~~~~ 217 (384)
.|..++|+.+.| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 467899999999 999999999999999887
No 205
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=39.00 E-value=16 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=20.1
Q ss_pred CCceeeeeecCChHHHHHHHHHhhC
Q 016689 251 EPLCQVMLRVGDLDRAINFYKKAFG 275 (384)
Q Consensus 251 ~~~~hV~L~V~Dle~s~~FY~~vLG 275 (384)
++++...+.+.+.+++.+||+..|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 3566677778999999999998763
No 206
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.90 E-value=1.5e+02 Score=21.86 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCeeeeCCccccCC-CEEEEEEECCCCCEE
Q 016689 202 VAKTVDLVKAKGGKVTREPGPVKGG-NTVIAFIEDPDGYKF 241 (384)
Q Consensus 202 v~~~~~~l~~~G~~~~~~p~~~~~g-~~~~~~~~DPdG~~i 241 (384)
+..+...+.+.|+.+....-...++ -.-.+|+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 6677889999999887643322222 234789999999877
No 207
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.49 E-value=1.8e+02 Score=21.75 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCeEecCCccCCCC-CceEEEEECCCCCeEE
Q 016689 332 VYKTAEAIKLSGGKITREPGPLPGI-NTKITACLDPDGWKSV 372 (384)
Q Consensus 332 vd~~~~~l~~~G~~i~~~p~~~~~~-~~~~~~~~DPdG~~iE 372 (384)
+.++...+.+.|+.+....-...+. ....+|++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 6778889999999887554333332 1367999999999874
No 208
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=28.43 E-value=90 Score=25.64 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=48.6
Q ss_pred ceEEEEEECCHHHHHHHHHHcCCeeeeC------CccccCCCEEEE-EEECCCC---CEEEEeecCCCCCCceeeeeecC
Q 016689 192 FGHFGIAVEDVAKTVDLVKAKGGKVTRE------PGPVKGGNTVIA-FIEDPDG---YKFELLERGPTPEPLCQVMLRVG 261 (384)
Q Consensus 192 ~~hi~~~v~Dv~~~~~~l~~~G~~~~~~------p~~~~~g~~~~~-~~~DPdG---~~iel~~~~~~~~~~~hV~L~V~ 261 (384)
++-+-..|++-+.++..|+++|..+... -.+.++|-.+++ .+.|-|= |...|++.+ .-.-+.++|.
T Consensus 42 FGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek----~KAlli~r~e 117 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK----QKALLIVRVE 117 (142)
T ss_pred cceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC----ceEEEEEEhh
Confidence 3346677899999999999999876431 112222211111 1222221 222333332 2334677899
Q ss_pred ChHHHHHHHHHhhCCeEe
Q 016689 262 DLDRAINFYKKAFGMELL 279 (384)
Q Consensus 262 Dle~s~~FY~~vLG~~~~ 279 (384)
|+++++.-.++ .|.++.
T Consensus 118 d~d~~~~aLed-~gi~~~ 134 (142)
T COG4747 118 DIDRAIKALED-AGIKLI 134 (142)
T ss_pred HHHHHHHHHHH-cCCeec
Confidence 99999999977 777664
No 209
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.20 E-value=3.8e+02 Score=22.87 Aligned_cols=42 Identities=19% Similarity=0.485 Sum_probs=29.1
Q ss_pred EEEEECC---HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 195 FGIAVED---VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 195 i~~~v~D---v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+-+.++| +|.+...|...|.. .....+++|--|.-|.|..+.
T Consensus 81 ~~v~~~~q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p~~ 125 (151)
T COG3865 81 FQVACDDQEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVPRV 125 (151)
T ss_pred EEEEcCCHHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcHHH
Confidence 4444555 66678888888862 122567999999999987653
No 210
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=69 Score=30.26 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=35.1
Q ss_pred EEEEEcCC-HHHHHHHHHHCCCeEecCCccCCCCCceEEEEECCCCCeEEEEecC
Q 016689 324 QIAIGTDD-VYKTAEAIKLSGGKITREPGPLPGINTKITACLDPDGWKSVFVDNL 377 (384)
Q Consensus 324 hiaf~VdD-vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~~~DPdG~~iElve~~ 377 (384)
-|+.+|+| +..+.+.|+...-.+.--|.... .+++.-|+.++|+.+||....
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d--~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSD--PAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCC--CccceeeecCCCeEEEEeccC
Confidence 35556654 67777888766655544443333 357777899999999999843
No 211
>PRK11700 hypothetical protein; Provisional
Probab=24.76 E-value=4.5e+02 Score=23.39 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=42.7
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeEeeeecCCCCc-EEEEEeecCC---CCcceEEEEeccCCCccccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMELLRKRDNPDYK-YTIAVMGYGP---EDKNAVLELTYNHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~lel~~~~~~~~~~~g~g~~hiaf 327 (384)
.++|+.++|++.+.|.+|-+..+-.-..-....-+++ ..++.+..+- .-.-..+||.++.. ..|+ ..|.-||-+
T Consensus 39 ~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~Yp-~eGWEHIEl 116 (187)
T PRK11700 39 EADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KRYP-HEGWEHIEL 116 (187)
T ss_pred cCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCCC-CCCceEEEE
Confidence 6789999999999999998765533211111111221 2222222111 11234567776533 2333 368889999
Q ss_pred EcC
Q 016689 328 GTD 330 (384)
Q Consensus 328 ~Vd 330 (384)
.++
T Consensus 117 Vlp 119 (187)
T PRK11700 117 VLP 119 (187)
T ss_pred Eec
Confidence 884
No 212
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=23.89 E-value=4.9e+02 Score=23.12 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=38.2
Q ss_pred CceeeeeecCChHHHHHHHHHhhCCeE-eeeecCCCCcEEEEEeecC---CCCcceEEEEeccCCCccccCCCceeEEEE
Q 016689 252 PLCQVMLRVGDLDRAINFYKKAFGMEL-LRKRDNPDYKYTIAVMGYG---PEDKNAVLELTYNHGVTEYDKGNGYAQIAI 327 (384)
Q Consensus 252 ~~~hV~L~V~Dle~s~~FY~~vLG~~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~lel~~~~~~~~~~~g~g~~hiaf 327 (384)
.++|+.++|++.+.+.+|-+..+-.-. .......+....++-+..+ ....-..+||.++.+ ..| ...|.-||-|
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P~~-K~Y-p~eGWEHIE~ 111 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYPKD-KRY-PQEGWEHIEF 111 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---S-S---SS-EEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 578999999999999999988775532 2221111211222222211 011234567776533 223 2468889999
Q ss_pred EcC
Q 016689 328 GTD 330 (384)
Q Consensus 328 ~Vd 330 (384)
.++
T Consensus 112 Vip 114 (185)
T PF06185_consen 112 VIP 114 (185)
T ss_dssp E--
T ss_pred Eec
Confidence 884
No 213
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=23.55 E-value=3e+02 Score=26.86 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecCCCCCCceeeeeecCChHHHHHHHHHhhC
Q 016689 200 EDVAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAINFYKKAFG 275 (384)
Q Consensus 200 ~Dv~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~~~~~~~~hV~L~V~Dle~s~~FY~~vLG 275 (384)
-|++++.++++..| .+...|. ...|+. +++.+-++..+.. +.-.+.|.++|+..|.+.+|
T Consensus 279 ~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~-~~~~~~~f~~gr~------~~~g~~~~~~a~~~~~~~~~ 338 (338)
T PRK12475 279 LNLEEIKKRLQKIG-KVDANPY--------LLSFQL-DEYRFVLFTDGRA------FIHGTNDIKKAKRLYARYIG 338 (338)
T ss_pred cCHHHHHHHHhhcC-EEEeccc--------EEEEEE-CCEEEEEEcCCcE------EEECCCCHHHHHHHHHHhcC
Confidence 36889999999887 4544432 222333 4577777665432 34468999999999999886
No 214
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=23.15 E-value=5.3e+02 Score=22.79 Aligned_cols=135 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred EEEEECCHHHHHHHHHHcCCeeeeCCcccc------C----CCEEEEEEECCCCCEEEEeecCCC----CCCceeeeeec
Q 016689 195 FGIAVEDVAKTVDLVKAKGGKVTREPGPVK------G----GNTVIAFIEDPDGYKFELLERGPT----PEPLCQVMLRV 260 (384)
Q Consensus 195 i~~~v~Dv~~~~~~l~~~G~~~~~~p~~~~------~----g~~~~~~~~DPdG~~iel~~~~~~----~~~~~hV~L~V 260 (384)
+=+.+.|.+...++|++.|........+.. . .......++.-+|+...+.-.+|. .....-+.+.+
T Consensus 6 vK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v 85 (178)
T COG1437 6 VKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEV 85 (178)
T ss_pred EEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEe
Confidence 345677899999999999887664322211 0 011223344233333333333332 13467788999
Q ss_pred CChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCCCCcceEEEEeccCCCccccCCCceeEEEEEcCCHHH------
Q 016689 261 GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGPEDKNAVLELTYNHGVTEYDKGNGYAQIAIGTDDVYK------ 334 (384)
Q Consensus 261 ~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lel~~~~~~~~~~~g~g~~hiaf~VdDvd~------ 334 (384)
.|++++.+-+.+ |||+....... .+..+... ...+++....+ -+.+.-|...++|-++
T Consensus 86 ~D~~~~~~il~~-LGF~~~~~VkK----~R~iY~~~-----~~~i~lD~Veg------LG~F~EIE~~~~d~~e~~~~~~ 149 (178)
T COG1437 86 SDVEKALEILKR-LGFKEVAVVKK----TREIYKVG-----NVTIELDAVEG------LGDFLEIEVMVDDENEIDGAKE 149 (178)
T ss_pred CCHHHHHHHHHH-cCCceeeEEEE----EEEEEeeC-----CEEEEEecccC------CcccEEEEEecCCchhhHHHHH
Confidence 999999999965 99987654321 23333221 35555544222 1234455566665433
Q ss_pred -HHHHHHHCCCe
Q 016689 335 -TAEAIKLSGGK 345 (384)
Q Consensus 335 -~~~~l~~~G~~ 345 (384)
+.+.+++.|++
T Consensus 150 ~~~~i~~~lGl~ 161 (178)
T COG1437 150 EIEEIARQLGLK 161 (178)
T ss_pred HHHHHHHHhCCC
Confidence 66778888885
No 215
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.11 E-value=1.5e+02 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEEECC----HHHHHHHHHHcCCeeee
Q 016689 191 GFGHFGIAVED----VAKTVDLVKAKGGKVTR 218 (384)
Q Consensus 191 g~~hi~~~v~D----v~~~~~~l~~~G~~~~~ 218 (384)
+...+.++++| ++++.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 33457888888 88999999999998764
No 216
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.70 E-value=1.8e+02 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHhhCCeEeeeecCCCCcEEEEEeecCC
Q 016689 261 GDLDRAINFYKKAFGMELLRKRDNPDYKYTIAVMGYGP 298 (384)
Q Consensus 261 ~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~~~ 298 (384)
.|+.+++.||.+.||+++... .+.....+|-...+
T Consensus 145 a~~~e~a~wy~dyLGleie~~---hgevikfiFTnIdp 179 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNIDP 179 (246)
T ss_pred hccHHHHHHHHHhcCceeeec---cCceEEEEEeccCC
Confidence 678888999999999998532 23335555555443
No 217
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=85 Score=29.67 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=35.4
Q ss_pred EEEEECC-HHHHHHHHHHcCCeeeeCCccccCCCEEEEEEECCCCCEEEEeecC
Q 016689 195 FGIAVED-VAKTVDLVKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 247 (384)
Q Consensus 195 i~~~v~D-v~~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~iel~~~~ 247 (384)
+..+|+| +..+.+.|+.....+..-|... +.....-|..++|+++|++...
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~--d~ak~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRS--DPAKSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccC--CCccceeeecCCCeEEEEeccC
Confidence 5556766 7778888888777766444333 3344444699999999999753
No 218
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.03 E-value=1.4e+02 Score=16.78 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=10.6
Q ss_pred CEEEEEEECCCCCEE
Q 016689 227 NTVIAFIEDPDGYKF 241 (384)
Q Consensus 227 ~~~~~~~~DPdG~~i 241 (384)
......++|++|+.+
T Consensus 5 n~I~~i~~D~~G~lW 19 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLW 19 (24)
T ss_dssp SCEEEEEE-TTSCEE
T ss_pred CeEEEEEEcCCcCEE
Confidence 345667899999987
Done!