Query 016690
Match_columns 384
No_of_seqs 262 out of 1032
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 7.6E-40 2.6E-44 275.1 7.0 95 44-138 2-106 (106)
2 2ldu_A Heat shock factor prote 100.0 4.8E-39 1.7E-43 277.7 6.8 98 44-141 15-123 (125)
3 3hts_B Heat shock transcriptio 100.0 4.6E-33 1.6E-37 232.2 2.9 80 44-123 10-100 (102)
4 2ypr_A Protein FEV; transcript 89.7 0.11 3.6E-06 43.0 1.4 73 48-120 9-86 (102)
5 1awc_A Protein (GA binding pro 89.5 0.14 4.7E-06 42.8 1.9 56 53-108 7-63 (110)
6 1fli_A FLI-1; transcription/DN 89.2 0.14 4.9E-06 41.9 1.8 61 48-108 7-68 (98)
7 1bc8_C SAP-1, protein (SAP-1 E 88.7 0.11 3.9E-06 42.1 0.8 74 47-120 5-83 (93)
8 1gvj_A C-ETS-1 protein, P54; t 88.2 0.11 3.9E-06 45.3 0.6 83 38-120 31-118 (146)
9 4avp_A ETS translocation varia 88.0 0.21 7.1E-06 41.5 2.0 74 47-120 12-90 (106)
10 2nny_A C-ETS-1 protein, P54; p 84.5 0.42 1.4E-05 42.7 2.2 78 43-120 61-143 (171)
11 3jtg_A ETS-related transcripti 83.3 0.69 2.4E-05 38.1 2.9 69 51-119 9-84 (103)
12 2jee_A YIIU; FTSZ, septum, coi 82.5 8.4 0.00029 30.4 8.7 51 161-211 25-75 (81)
13 2dao_A Transcription factor ET 81.8 0.49 1.7E-05 40.0 1.5 75 46-120 8-88 (118)
14 1hbx_G ETS-domain protein ELK- 81.3 0.31 1.1E-05 42.9 0.1 74 48-121 7-85 (157)
15 2lf8_A Transcription factor ET 77.5 0.56 1.9E-05 40.1 0.0 55 53-107 11-67 (128)
16 1pue_E Protein (transcription 74.8 1.3 4.6E-05 35.5 2.0 56 53-108 8-68 (89)
17 1yo5_C SAM pointed domain cont 74.1 0.86 3E-05 37.2 0.7 64 47-110 11-77 (97)
18 1wwx_A E74-like factor 5 ESE-2 73.9 2 6.9E-05 35.6 2.9 63 46-108 8-73 (107)
19 3tnu_B Keratin, type II cytosk 69.7 29 0.00098 28.9 9.3 57 161-217 34-90 (129)
20 3he5_B Synzip2; heterodimeric 68.9 14 0.00046 25.8 5.7 41 161-201 8-48 (52)
21 2yy0_A C-MYC-binding protein; 64.6 13 0.00045 26.7 5.3 32 162-193 18-49 (53)
22 1a93_B MAX protein, coiled coi 64.2 11 0.00036 25.0 4.2 28 168-195 5-32 (34)
23 3tnu_A Keratin, type I cytoske 63.7 28 0.00096 29.1 8.1 57 161-217 36-92 (131)
24 3i00_A HIP-I, huntingtin-inter 61.3 43 0.0015 28.0 8.6 43 162-204 14-60 (120)
25 1deb_A APC protein, adenomatou 58.3 49 0.0017 23.8 8.2 40 165-204 5-44 (54)
26 4dzn_A Coiled-coil peptide CC- 56.3 16 0.00056 23.3 3.9 20 164-183 10-29 (33)
27 3e98_A GAF domain of unknown f 55.8 29 0.00098 32.3 7.4 76 119-221 41-116 (252)
28 1wt6_A Myotonin-protein kinase 54.8 50 0.0017 25.9 7.4 44 161-208 19-62 (81)
29 2wt7_A Proto-oncogene protein 53.6 26 0.0009 25.7 5.5 29 161-189 28-56 (63)
30 3hnw_A Uncharacterized protein 51.9 87 0.003 26.6 9.2 40 162-201 67-106 (138)
31 2yy0_A C-MYC-binding protein; 51.8 28 0.00096 25.0 5.2 28 171-198 20-47 (53)
32 1t2k_D Cyclic-AMP-dependent tr 51.8 26 0.00088 25.5 5.1 30 161-190 27-56 (61)
33 2wt7_B Transcription factor MA 50.1 38 0.0013 27.1 6.2 40 163-202 48-87 (90)
34 3cue_D Transport protein parti 49.5 12 0.0004 33.9 3.5 63 46-109 86-157 (193)
35 2w83_C C-JUN-amino-terminal ki 48.8 22 0.00074 27.7 4.3 41 160-200 34-74 (77)
36 3hnw_A Uncharacterized protein 46.8 75 0.0026 27.0 8.0 51 160-210 72-122 (138)
37 4gkw_A Spindle assembly abnorm 46.0 89 0.003 26.8 8.1 39 163-201 46-84 (167)
38 4dzn_A Coiled-coil peptide CC- 45.8 56 0.0019 20.8 5.2 21 163-183 2-22 (33)
39 1sz7_A BET3 homolog, trafficki 45.5 20 0.0007 32.5 4.4 64 46-110 83-154 (200)
40 2xdj_A Uncharacterized protein 43.5 1.1E+02 0.0039 23.7 8.7 43 162-204 5-47 (83)
41 4etp_A Kinesin-like protein KA 41.9 87 0.003 31.1 8.8 47 164-210 4-50 (403)
42 3q8t_A Beclin-1; autophagy, AT 39.6 1.4E+02 0.0048 23.7 8.4 47 161-207 9-55 (96)
43 3na7_A HP0958; flagellar bioge 38.3 1.3E+02 0.0044 27.6 8.9 12 325-336 207-218 (256)
44 1wt6_A Myotonin-protein kinase 38.0 1.1E+02 0.0039 23.9 7.0 41 171-211 15-58 (81)
45 1c1g_A Tropomyosin; contractIl 37.0 1.4E+02 0.0047 25.7 8.6 20 164-183 14-33 (284)
46 3m48_A General control protein 36.7 38 0.0013 22.2 3.4 24 161-184 5-28 (33)
47 1kd8_B GABH BLL, GCN4 acid bas 36.0 69 0.0023 21.3 4.6 26 161-186 6-31 (36)
48 1deb_A APC protein, adenomatou 35.8 1.2E+02 0.0041 21.7 7.0 43 161-203 8-50 (54)
49 4emc_A Monopolin complex subun 35.7 1.1E+02 0.0038 27.5 7.6 51 178-228 28-78 (190)
50 1jnm_A Proto-oncogene C-JUN; B 34.9 26 0.00088 25.6 2.8 28 161-188 27-54 (62)
51 1hjb_A Ccaat/enhancer binding 34.6 52 0.0018 26.0 4.7 17 166-182 46-62 (87)
52 3a7p_A Autophagy protein 16; c 34.5 1.7E+02 0.0059 25.4 8.4 21 163-183 68-88 (152)
53 1nkp_A C-MYC, MYC proto-oncoge 33.6 75 0.0026 24.8 5.5 32 165-196 54-85 (88)
54 1ci6_A Transcription factor AT 32.8 69 0.0023 23.5 4.9 21 163-183 30-50 (63)
55 1g6u_A Domain swapped dimer; d 32.4 1.2E+02 0.0041 20.7 6.7 9 193-201 29-37 (48)
56 1nkp_B MAX protein, MYC proto- 32.3 50 0.0017 25.2 4.2 28 165-192 49-76 (83)
57 3ra3_B P2F; coiled coil domain 32.1 40 0.0014 20.7 2.8 17 166-182 3-19 (28)
58 3a2a_A Voltage-gated hydrogen 31.2 1.5E+02 0.0052 21.6 6.7 24 163-186 11-34 (58)
59 2dgc_A Protein (GCN4); basic d 30.8 36 0.0012 25.2 3.0 25 161-185 35-59 (63)
60 3uux_B Mitochondrial division 30.5 2.4E+02 0.0083 26.3 9.2 70 165-234 151-220 (242)
61 3a7p_A Autophagy protein 16; c 30.0 2.7E+02 0.0094 24.1 10.1 33 179-211 98-130 (152)
62 3oja_B Anopheles plasmodium-re 30.0 1.9E+02 0.0064 29.1 9.3 43 163-205 509-551 (597)
63 3bj4_A Potassium voltage-gated 29.7 98 0.0034 22.0 4.9 31 189-219 15-45 (49)
64 2jee_A YIIU; FTSZ, septum, coi 29.3 2E+02 0.0069 22.4 9.2 34 162-195 12-45 (81)
65 4etp_A Kinesin-like protein KA 29.1 1.4E+02 0.0049 29.4 8.0 32 173-204 6-37 (403)
66 1jcd_A Major outer membrane li 28.7 1.6E+02 0.0055 21.0 6.3 41 161-201 9-49 (52)
67 3oja_B Anopheles plasmodium-re 28.5 2.5E+02 0.0086 28.2 9.9 22 161-182 468-489 (597)
68 1lwu_C Fibrinogen gamma chain; 28.0 1.4E+02 0.0047 29.0 7.4 15 190-204 25-39 (323)
69 3c3g_A Alpha/beta peptide with 28.0 65 0.0022 21.1 3.4 24 161-184 5-28 (33)
70 1kd8_A GABH AIV, GCN4 acid bas 27.9 1.1E+02 0.0039 20.3 4.6 26 161-186 6-31 (36)
71 2v66_B Nuclear distribution pr 27.6 2.6E+02 0.0088 23.0 8.3 37 172-208 37-73 (111)
72 4emc_A Monopolin complex subun 26.6 3.5E+02 0.012 24.3 9.2 44 161-204 25-68 (190)
73 2v71_A Nuclear distribution pr 26.2 3.5E+02 0.012 24.2 9.2 24 161-184 47-70 (189)
74 3c3f_A Alpha/beta peptide with 26.1 80 0.0027 20.8 3.6 24 161-184 6-29 (34)
75 4e61_A Protein BIM1; EB1-like 25.8 2.7E+02 0.0094 22.7 7.9 35 174-208 8-42 (106)
76 1gd2_E Transcription factor PA 25.6 69 0.0024 24.3 3.8 29 161-189 34-62 (70)
77 3u06_A Protein claret segregat 25.1 2.5E+02 0.0085 27.9 8.9 23 179-201 19-41 (412)
78 2v66_B Nuclear distribution pr 25.0 2.9E+02 0.0098 22.7 8.2 46 161-206 40-85 (111)
79 3qne_A Seryl-tRNA synthetase, 24.8 2E+02 0.0067 29.5 8.2 55 160-214 44-101 (485)
80 2dq0_A Seryl-tRNA synthetase; 24.8 2E+02 0.0067 29.0 8.2 52 160-211 42-96 (455)
81 3mq7_A Bone marrow stromal ant 24.8 1.1E+02 0.0037 25.6 5.1 30 172-201 73-102 (121)
82 2xdj_A Uncharacterized protein 24.7 2.5E+02 0.0084 21.8 7.9 41 175-215 25-65 (83)
83 1aq5_A Matrilin-1, CMP, cartil 24.4 1.5E+02 0.0051 20.9 5.0 24 177-200 23-46 (47)
84 2bni_A General control protein 24.2 90 0.0031 20.5 3.6 24 161-184 6-29 (34)
85 3swf_A CGMP-gated cation chann 24.1 2.4E+02 0.0084 21.6 6.6 43 160-205 4-46 (74)
86 2xu6_A MDV1 coiled coil; prote 23.9 1.1E+02 0.0039 23.4 4.7 41 161-201 26-66 (72)
87 2oxj_A Hybrid alpha/beta pepti 23.7 86 0.0029 20.6 3.4 24 161-184 6-29 (34)
88 1uo4_A General control protein 23.6 94 0.0032 20.4 3.6 24 161-184 6-29 (34)
89 1hjb_A Ccaat/enhancer binding 23.5 2.4E+02 0.0083 22.1 6.8 27 174-200 40-66 (87)
90 1nlw_A MAD protein, MAX dimeri 23.3 1E+02 0.0036 23.6 4.5 26 165-190 49-74 (80)
91 2v71_A Nuclear distribution pr 23.2 3.8E+02 0.013 23.9 8.9 34 172-205 90-123 (189)
92 3a2a_A Voltage-gated hydrogen 23.2 2.2E+02 0.0075 20.7 6.3 37 178-214 12-48 (58)
93 2wq1_A General control protein 23.1 98 0.0034 20.2 3.6 24 161-184 5-28 (33)
94 3ra3_A P1C; coiled coil domain 23.1 74 0.0025 19.6 2.8 20 167-186 4-23 (28)
95 3q0x_A Centriole protein; cent 22.9 2.9E+02 0.0098 25.5 8.2 41 161-201 169-209 (228)
96 3t97_C Nuclear pore glycoprote 22.7 40 0.0014 25.2 1.9 36 172-214 14-49 (64)
97 3s9g_A Protein hexim1; cyclin 22.7 3.1E+02 0.011 22.2 8.2 48 161-208 35-82 (104)
98 3kqg_A Langerin, C-type lectin 22.7 1.2E+02 0.004 25.5 5.3 15 161-175 4-18 (182)
99 3mq7_A Bone marrow stromal ant 22.5 3.2E+02 0.011 22.8 7.5 10 193-202 73-82 (121)
100 1lwu_C Fibrinogen gamma chain; 22.0 2.9E+02 0.0098 26.7 8.4 41 171-211 13-53 (323)
101 1g6u_A Domain swapped dimer; d 22.0 1.9E+02 0.0067 19.7 6.7 13 193-205 22-34 (48)
102 4ani_A Protein GRPE; chaperone 21.7 4.2E+02 0.014 24.1 9.0 39 163-201 59-97 (213)
103 1wlq_A Geminin; coiled-coil; 2 21.5 2.6E+02 0.009 21.9 6.5 20 166-185 41-60 (83)
104 1wle_A Seryl-tRNA synthetase; 21.3 3.5E+02 0.012 27.6 9.3 55 160-214 81-146 (501)
105 2zqm_A Prefoldin beta subunit 21.2 2.4E+02 0.0084 22.1 6.7 42 160-201 67-108 (117)
106 2hy6_A General control protein 20.6 1.2E+02 0.004 20.0 3.6 24 161-184 6-29 (34)
107 3u06_A Protein claret segregat 20.6 2.6E+02 0.009 27.7 8.0 36 172-207 5-40 (412)
108 1gu4_A CAAT/enhancer binding p 20.3 71 0.0024 24.7 3.0 10 168-177 48-57 (78)
109 1l8d_A DNA double-strand break 20.1 2.5E+02 0.0086 22.0 6.5 32 165-196 5-36 (112)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=7.6e-40 Score=275.09 Aligned_cols=95 Identities=41% Similarity=0.787 Sum_probs=91.4
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016690 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (384)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (384)
+++|+||.|||.||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~ 81 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD 81 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCccccCCCcCcCcccchhhhccc
Q 016690 114 PDRWEFANEGFLGGQKHLLKTIKRR 138 (384)
Q Consensus 114 ~~~~eF~h~~F~Rg~~~LL~~IkRk 138 (384)
++.|+|+||+|+||+|+||.+|+||
T Consensus 82 ~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 82 RDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred CCceEEECcCccCcCHHHHhhCcCC
Confidence 4789999999999999999999997
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=277.66 Aligned_cols=98 Identities=52% Similarity=0.872 Sum_probs=93.6
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016690 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (384)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (384)
.++|+||.|||.||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 15 ~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~ 94 (125)
T 2ldu_A 15 SNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKP 94 (125)
T ss_dssp CCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSC
T ss_pred CCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred -CCCccccCCCcCcCcccchhhhcccccC
Q 016690 114 -PDRWEFANEGFLGGQKHLLKTIKRRRHV 141 (384)
Q Consensus 114 -~~~~eF~h~~F~Rg~~~LL~~IkRk~~~ 141 (384)
++.|+|+||+|+||+++||.+|+||++.
T Consensus 95 ~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 95 ERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp SSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred CCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 4689999999999999999999999875
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.97 E-value=4.6e-33 Score=232.19 Aligned_cols=80 Identities=48% Similarity=0.907 Sum_probs=76.7
Q ss_pred CCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhccCCcCCCChhhHHhhhccccccccC----------
Q 016690 44 AGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVD---------- 113 (384)
Q Consensus 44 ~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~---------- 113 (384)
..+|+||.|||.||+||+++++|+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.
T Consensus 10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~ 89 (102)
T 3hts_B 10 MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSN 89 (102)
T ss_dssp CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------C
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -CCCccccCCC
Q 016690 114 -PDRWEFANEG 123 (384)
Q Consensus 114 -~~~~eF~h~~ 123 (384)
+++|||+|++
T Consensus 90 ~~~~wEF~n~~ 100 (102)
T 3hts_B 90 NDSRWEFENER 100 (102)
T ss_dssp CSCCEEEEECC
T ss_pred CcCCeEecCCC
Confidence 6899999986
No 4
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=89.69 E-value=0.11 Score=42.96 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=51.2
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCcccc
Q 016690 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (384)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~ 120 (384)
....=|.++|+|+++.++|+|...+.-|.+.||++.++.-=. +-=...||..+.|-|..|-= +||...+..|.
T Consensus 9 ~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk 86 (102)
T 2ypr_A 9 QLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR 86 (102)
T ss_dssp CHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred eHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 344446788999999999999988899999999888863211 11146788889888887743 24454455443
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=89.49 E-value=0.14 Score=42.83 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=42.9
Q ss_pred HHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016690 53 TYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (384)
|.++|.||++.++|+|...+.-|.+.||++.++.-=. +-=...||...-|-|..|.
T Consensus 7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 63 (110)
T 1awc_A 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY 63 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 5788999999999999998889999999888763221 1113467888888887774
No 6
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=89.21 E-value=0.14 Score=41.91 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=45.7
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016690 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (384)
....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-
T Consensus 7 ~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY 68 (98)
T 1fli_A 7 QLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYY 68 (98)
T ss_dssp CSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHH
T ss_pred eHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHH
Confidence 344446778899999999999998889999999888763211 1214678888888888774
No 7
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=88.66 E-value=0.11 Score=42.10 Aligned_cols=74 Identities=12% Similarity=0.285 Sum_probs=52.9
Q ss_pred CchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCcccc
Q 016690 47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFA 120 (384)
Q Consensus 47 ~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~ 120 (384)
.....=|.++|.||+..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+..|.
T Consensus 5 i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~ 83 (93)
T 1bc8_C 5 ITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK 83 (93)
T ss_dssp CCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred ccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence 3344457889999999999999988889999999888864221 122467899999999887522 4444455554
No 8
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=88.24 E-value=0.11 Score=45.31 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=59.1
Q ss_pred cccCCCCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----cc
Q 016690 38 LEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KV 112 (384)
Q Consensus 38 ~e~~~~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv 112 (384)
+.|....++.....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+
T Consensus 31 ~~~~~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv 110 (146)
T 1gvj_A 31 LAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110 (146)
T ss_dssp HHHHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ccCCCCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEec
Confidence 3333345566677778899999999999999999889999999988863211 122356888888888887543 44
Q ss_pred CCCCcccc
Q 016690 113 DPDRWEFA 120 (384)
Q Consensus 113 ~~~~~eF~ 120 (384)
...+..|.
T Consensus 111 ~GkrlvY~ 118 (146)
T 1gvj_A 111 AGKRYVYR 118 (146)
T ss_dssp TTSSSEEE
T ss_pred CCCeEEEE
Confidence 54455554
No 9
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=87.97 E-value=0.21 Score=41.50 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=53.3
Q ss_pred CchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCcccc
Q 016690 47 PPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEFA 120 (384)
Q Consensus 47 ~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF~ 120 (384)
-....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=...||..+.|-|..|-= +||...+..|.
T Consensus 12 i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYk 90 (106)
T 4avp_A 12 LQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 90 (106)
T ss_dssp CCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEE
T ss_pred EeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEE
Confidence 3444557788999999999999998889999999888863211 22246789999999888742 35555555553
No 10
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=84.49 E-value=0.42 Score=42.74 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=55.5
Q ss_pred CCCCCchHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCc
Q 016690 43 DAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRW 117 (384)
Q Consensus 43 ~~~~~~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~ 117 (384)
..++.....=|.++|.|+...++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+.
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 140 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 140 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence 34556666667889999999999999999899999999888863211 112356788888888887544 4444444
Q ss_pred ccc
Q 016690 118 EFA 120 (384)
Q Consensus 118 eF~ 120 (384)
.|.
T Consensus 141 vY~ 143 (171)
T 2nny_A 141 VYR 143 (171)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 11
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=83.35 E-value=0.69 Score=38.13 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHhcCCC-CCCeEEEcCC-CCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccccc----cccCCCCccc
Q 016690 51 TKTYEMVEDLS-TDAIVSWSRT-RNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGF----RKVDPDRWEF 119 (384)
Q Consensus 51 ~KL~~ml~d~~-~~~iIsWs~~-G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF----~Kv~~~~~eF 119 (384)
.=|.++|.||+ ..++|+|... ..-|.+.||++.++.-=. +-=...||..+.|-|..|-= +|+...+..|
T Consensus 9 qFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY 84 (103)
T 3jtg_A 9 EFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVY 84 (103)
T ss_dssp HHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEE
T ss_pred HHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEE
Confidence 34667889998 5689999984 458999999888863111 11146789999999988732 2444444444
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.53 E-value=8.4 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
+.-+++.||.++..|..|...++........+...+.+.+..-..+...|+
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887777555444444444444444444443333333
No 13
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.82 E-value=0.49 Score=39.95 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCchHHHHHHHhcCCCCCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc---c-cccCCCCccc
Q 016690 46 PPPFLTKTYEMVEDLSTDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG---F-RKVDPDRWEF 119 (384)
Q Consensus 46 ~~~Fl~KL~~ml~d~~~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG---F-~Kv~~~~~eF 119 (384)
....-.=|.++|.||++.++|+|.. ++.-|.+.||++.++.-=. +-=...||...-|-|..|- + +|+...+..|
T Consensus 8 ~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY 87 (118)
T 2dao_A 8 CRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLF 87 (118)
T ss_dssp CCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEE
T ss_pred chHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEE
Confidence 3444555788899999999999987 4568999999888764222 2224578999999998883 2 3455555555
Q ss_pred c
Q 016690 120 A 120 (384)
Q Consensus 120 ~ 120 (384)
.
T Consensus 88 ~ 88 (118)
T 2dao_A 88 R 88 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 14
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=81.32 E-value=0.31 Score=42.93 Aligned_cols=74 Identities=12% Similarity=0.283 Sum_probs=52.7
Q ss_pred chHHHHHHHhcCCCCCCeEEEcCCCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc----ccCCCCccccC
Q 016690 48 PFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR----KVDPDRWEFAN 121 (384)
Q Consensus 48 ~Fl~KL~~ml~d~~~~~iIsWs~~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~----Kv~~~~~eF~h 121 (384)
....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=...||...-|-|..|-=+ |+...+..|..
T Consensus 7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF 85 (157)
T 1hbx_G 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 85 (157)
T ss_dssp CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEee
Confidence 344446788999999999999988889999999888864222 222467889999999887532 44445555543
No 15
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=77.53 E-value=0.56 Score=40.07 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=36.6
Q ss_pred HHHHhcCCCCCCeEEEcCCC-CeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhccc
Q 016690 53 TYEMVEDLSTDAIVSWSRTR-NSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTY 107 (384)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~G-~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 107 (384)
|.++|.|+++.++|+|...+ .-|.+.|+++.++.-=. +.=...||...-|-|..|
T Consensus 11 LleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 11 VYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 56788999999999998744 58999999877653111 111134555566655555
No 16
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=74.79 E-value=1.3 Score=35.50 Aligned_cols=56 Identities=13% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHhcCCCCCCeEEEcCCC-CeEEEe--CCchhhhhhccC--CcCCCChhhHHhhhcccc
Q 016690 53 TYEMVEDLSTDAIVSWSRTR-NSFIVW--DSHQFSTTLLPK--YFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 53 L~~ml~d~~~~~iIsWs~~G-~sFiI~--d~~~F~~~vLp~--~Fkh~nfsSFvRQLN~YG 108 (384)
|.++|.||++.++|+|...+ .-|-+. |+++.++.-=.+ .=...||...-|-|..|.
T Consensus 8 L~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 67889999999999998643 568775 677777632111 123678888988888874
No 17
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=74.07 E-value=0.86 Score=37.19 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.7
Q ss_pred CchHHHHHHHhcCCC-CCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccccc
Q 016690 47 PPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYGFR 110 (384)
Q Consensus 47 ~~Fl~KL~~ml~d~~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YGF~ 110 (384)
.....=|.++|.||+ ..++|+|.. ++.-|.+.|+++.++.-=. +-=...||...-|-|..|--+
T Consensus 11 i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~ 77 (97)
T 1yo5_C 11 IHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK 77 (97)
T ss_dssp CCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred eEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence 444555788999986 578999985 5779999999888864211 222367899999999888544
No 18
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=73.87 E-value=2 Score=35.59 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=45.4
Q ss_pred CCchHHHHHHHhcCCC-CCCeEEEcC-CCCeEEEeCCchhhhhhcc-CCcCCCChhhHHhhhcccc
Q 016690 46 PPPFLTKTYEMVEDLS-TDAIVSWSR-TRNSFIVWDSHQFSTTLLP-KYFKHSNFSSFIRQLNTYG 108 (384)
Q Consensus 46 ~~~Fl~KL~~ml~d~~-~~~iIsWs~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~YG 108 (384)
......=|.++|.||+ ..++|+|.. +..-|.+.|+++.++.-=. +-=...||...-|-|..|.
T Consensus 8 ~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 73 (107)
T 1wwx_A 8 SSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYY 73 (107)
T ss_dssp SCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred cEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 3445556788899986 568999987 4678999999888864211 1113678889999888874
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.69 E-value=29 Score=28.94 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~ 217 (384)
...++..|++..+.|..||..++.+.......+..++.|....-..-+..+.-|...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEA 90 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999988888888888888887765444444444444433
No 20
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.93 E-value=14 Score=25.84 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+...|.+||+|+-.|...-.+|..-..+++.++..++..+.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777766666555555555555555555555443
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.56 E-value=13 Score=26.74 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQL 193 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql 193 (384)
..+++.||.++..|..++..|+++.+.++.++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777776665555544
No 22
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.20 E-value=11 Score=25.04 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 168 LKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (384)
Q Consensus 168 LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (384)
+++.+++..++|..|+.|+..++.|+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4556666666666666655544444433
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.73 E-value=28 Score=29.13 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKA 217 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~ 217 (384)
...++..|++..+.|..||..++.+.......+..++.|....-..-+..+.-|...
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888889999888888877778888777777765444444444444433
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=61.26 E-value=43 Score=28.01 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 016690 162 DGELERLKRDRNVLMAEIVRLRQHQQQS----RDQLSAMEDRLLSTE 204 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~----~~ql~~meeRl~~~E 204 (384)
+..|+.|+++...|..|+.+++.+.+.. +.++..|+..+....
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999998776543 444555555554433
No 25
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.27 E-value=49 Score=23.77 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
+++|-++-+.|..|...||++.++-..|+..+|..--.|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 4566677777777777777777777777777766555444
No 26
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.33 E-value=16 Score=23.26 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016690 164 ELERLKRDRNVLMAEIVRLR 183 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~Lr 183 (384)
|+..||++..+|.-|++.|+
T Consensus 10 eiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 10 EIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 27
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=55.81 E-value=29 Score=32.33 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=32.4
Q ss_pred ccCCCcCcCcccchhhhcccccCCccccccCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 119 FANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (384)
Q Consensus 119 F~h~~F~Rg~~~LL~~IkRk~~~s~~~~~~~~~~~~e~~~~~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~mee 198 (384)
=.||.|.-.+++||..++=..+.. +. .+| ....+..||++...++.++..|-+
T Consensus 41 ~~~PdFf~~~~~Ll~~L~lph~~~--------~a------VSL-------------~erQ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 41 SQHPEFFVEHDELIPELRIPHQPG--------DA------VSL-------------VERQVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp ----------------------------------------CHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHhhCHHHHHhCCCCCCCC--------Cc------ccH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999887532221 10 111 112255666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 016690 199 RLLSTEKKQQQMMTFLAKALKNP 221 (384)
Q Consensus 199 Rl~~~E~kqqqm~~FLak~~qnp 221 (384)
.-+..+....++..+..+++.-.
T Consensus 94 ~A~~Ne~l~~~~~~l~l~LL~a~ 116 (252)
T 3e98_A 94 VARENDRLFDKTRRLVLDLLDAT 116 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 77777777888877777777643
No 28
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=54.84 E-value=50 Score=25.90 Aligned_cols=44 Identities=27% Similarity=0.303 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
++.|| +-++.+..||.+.|-.+..+..+|+..+.|.+.++....
T Consensus 19 LeaEI----qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 19 LEEEV----LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 567778888888887777777777666666665554433
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.60 E-value=26 Score=25.70 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQS 189 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~ 189 (384)
|..+++.|..++..|..+|..|+.+...+
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777766666666554433
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.94 E-value=87 Score=26.60 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
-.++-.++++...|..++..+..+.+.++.++.....++.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333333
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.84 E-value=28 Score=24.98 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 171 DRNVLMAEIVRLRQHQQQSRDQLSAMED 198 (384)
Q Consensus 171 d~~~L~~El~~LrQqqq~~~~ql~~mee 198 (384)
|..+|..|+..||++...+..++..+..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333333
No 32
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.80 E-value=26 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSR 190 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~ 190 (384)
++.+++.|..++..|..+|..|+.+...+.
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666554433
No 33
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.07 E-value=38 Score=27.07 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLS 202 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~ 202 (384)
.+...|..++..|+.|+..|+++...+..++..+..++..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777666643
No 34
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=49.50 E-value=12 Score=33.86 Aligned_cols=63 Identities=19% Similarity=0.442 Sum_probs=48.5
Q ss_pred CCchHHH-HHHHhcCCCCCCeEEEcCCCCeEEE-eCCchhhhhh-ccCCc-CCCChhhHHhh-----hccccc
Q 016690 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYF-KHSNFSSFIRQ-----LNTYGF 109 (384)
Q Consensus 46 ~~~Fl~K-L~~ml~d~~~~~iIsWs~~G~sFiI-~d~~~F~~~v-Lp~~F-kh~nfsSFvRQ-----LN~YGF 109 (384)
...|+.| +|.++=.-..+ ...|+++++.|+| .|..-+..-| +|... ..-+|+.|+.= |.+-||
T Consensus 86 ~l~fI~k~~Wk~lfgk~~d-~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNITPN-ITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHHHSSCCCC-CBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCc-cceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 4578855 89888776555 6789999999999 7777666544 78777 67799999765 677888
No 35
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=48.77 E-value=22 Score=27.69 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
.|...++.|-.++.+|..|+..+++-...+..++..||+.+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766655555555555544
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.77 E-value=75 Score=26.98 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=27.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
.+..+++.|..+...+..|+..|+++......++..++..+..+..+.+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666655555555555444444444443333
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=46.05 E-value=89 Score=26.80 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+.+++|++.+.+-+.||.+||.+...+...+......+.
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345566666666666666666555444444444443333
No 38
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.81 E-value=56 Score=20.79 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLR 183 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~Lr 183 (384)
+|+..||++..+|..|++.|+
T Consensus 2 geiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666554
No 39
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=45.49 E-value=20 Score=32.54 Aligned_cols=64 Identities=16% Similarity=0.375 Sum_probs=47.7
Q ss_pred CCchHHH-HHHHhcCCCCCCeEEEcCCCCeEEE-eCCchhhhhh-ccCCcCCCChhhHHhh-----hcccccc
Q 016690 46 PPPFLTK-TYEMVEDLSTDAIVSWSRTRNSFIV-WDSHQFSTTL-LPKYFKHSNFSSFIRQ-----LNTYGFR 110 (384)
Q Consensus 46 ~~~Fl~K-L~~ml~d~~~~~iIsWs~~G~sFiI-~d~~~F~~~v-Lp~~Fkh~nfsSFvRQ-----LN~YGF~ 110 (384)
...|+.| +|.++=.-.. +...|+++++.|+| .|..-+..-| +|.-.+.-+|+.|+.= |.+-||.
T Consensus 83 ~l~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 83 TADVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 4578865 8888866544 47899999999999 6776555433 7876677789999764 6777887
No 40
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.48 E-value=1.1e+02 Score=23.74 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
+..+.+|.+-..+...-+..|.++...+..++..++..+....
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~ 47 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444433222222333344444444444444444443333
No 41
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.91 E-value=87 Score=31.05 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 164 ELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQM 210 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm 210 (384)
+++.|+.+...|.+++..|.+....++.++..+.+++...+..-.++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666666666555433333
No 42
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=39.63 E-value=1.4e+02 Score=23.66 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=37.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kq 207 (384)
+..++..|+.+-..|..||..|..+...+..++.+++.........-
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 56778888888888888888888888888888888777776665443
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.29 E-value=1.3e+02 Score=27.59 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=7.6
Q ss_pred CcchHHHHHhhh
Q 016690 325 SVNETIWEDFMA 336 (384)
Q Consensus 325 ~~~~~~weell~ 336 (384)
.+....+-++..
T Consensus 207 ~lppq~~~~i~~ 218 (256)
T 3na7_A 207 RLNDKIYTEVLT 218 (256)
T ss_dssp BCCHHHHHHHHH
T ss_pred eeCHHHHHHHHC
Confidence 456666767664
No 44
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.00 E-value=1.1e+02 Score=23.86 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 171 DRNVLMAEIVRL---RQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 171 d~~~L~~El~~L---rQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
=+.+|..||..= ..+...++.-+.+++.+|+..+.+.+.+.
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555421 22333444445555566666665555554
No 45
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=37.04 E-value=1.4e+02 Score=25.69 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016690 164 ELERLKRDRNVLMAEIVRLR 183 (384)
Q Consensus 164 eie~LKrd~~~L~~El~~Lr 183 (384)
+++.+......|..++..++
T Consensus 14 ~~~~~~~~~~~l~~~l~~l~ 33 (284)
T 1c1g_A 14 DKENALDRADEAEADKKAAE 33 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 46
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.73 E-value=38 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|-..+..|..|+.+|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 577888888899999999998874
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=35.96 E-value=69 Score=21.33 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (384)
++..++.|...+..|..|+.+||.-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 57788889899999999999887643
No 48
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.84 E-value=1.2e+02 Score=21.74 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLST 203 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~ 203 (384)
+-.+++.||+++..|.+|+..--++.-..+++-..|.+-+..+
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4567888999999999999888888877787777777766533
No 49
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.71 E-value=1.1e+02 Score=27.53 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Q 016690 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLA 228 (384)
Q Consensus 178 El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~ 228 (384)
|+..|.++...-..++.+++++++.++..-...-.-+++...+-+++.-|.
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 333333333333333444444444333333222233344444334444443
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.88 E-value=26 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQ 188 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~ 188 (384)
|+.+++.|..++..|..++..|+.+...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666655433
No 51
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.61 E-value=52 Score=26.01 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016690 166 ERLKRDRNVLMAEIVRL 182 (384)
Q Consensus 166 e~LKrd~~~L~~El~~L 182 (384)
+.|..++..|..+|..|
T Consensus 46 ~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 46 LELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.49 E-value=1.7e+02 Score=25.40 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLR 183 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~Lr 183 (384)
..|..|+.+...|..+|..|.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 53
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.58 E-value=75 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (384)
|..|+.....+..++..|+++++.+..+++.+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666655555554443
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.85 E-value=69 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLR 183 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~Lr 183 (384)
.+++.|+.++..|..+|..|+
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333
No 55
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.41 E-value=1.2e+02 Score=20.72 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016690 193 LSAMEDRLL 201 (384)
Q Consensus 193 l~~meeRl~ 201 (384)
+++++..+.
T Consensus 29 lqalekkla 37 (48)
T 1g6u_A 29 LQALEKKLA 37 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.28 E-value=50 Score=25.22 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQ 192 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~q 192 (384)
|..|+...+.|..|+..|++++..+..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444433333
No 57
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.06 E-value=40 Score=20.74 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016690 166 ERLKRDRNVLMAEIVRL 182 (384)
Q Consensus 166 e~LKrd~~~L~~El~~L 182 (384)
.+||+.+..|.+|++.|
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 34555555444444444
No 58
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.19 E-value=1.5e+02 Score=21.55 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqq 186 (384)
..+.+||.-+..|...+..|+.+.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c 34 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSC 34 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665655555554443
No 59
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.82 E-value=36 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQq 185 (384)
|..+++.|+.++..|..|+..|+++
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777654
No 60
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.51 E-value=2.4e+02 Score=26.26 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHhhHHhh
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLAKALKNPSFFQQLAQSNAHR 234 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLak~~qnp~fi~ql~~~~~~~ 234 (384)
+..|++..+.+..++..|-=+..-+..++..+..+++.+....+.++.=||.+=++-.|+..-+..-+.|
T Consensus 151 l~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 151 PSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3568888888888888886666667788888888888888889999999999988888887776555433
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.04 E-value=2.7e+02 Score=24.13 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 179 IVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 179 l~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
+..++.++.....++..++++++.++...+.++
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666665554443
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.02 E-value=1.9e+02 Score=29.14 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.++..++.+.+.+..++.+++++.+....+++.++++...+|+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3444444555555555555554443333334433333333333
No 63
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=29.71 E-value=98 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016690 189 SRDQLSAMEDRLLSTEKKQQQMMTFLAKALK 219 (384)
Q Consensus 189 ~~~ql~~meeRl~~~E~kqqqm~~FLak~~q 219 (384)
+-.++..+|+++..++++-..|+..+-.+++
T Consensus 15 ~~~Rl~rVE~qV~~md~KLd~l~~~~~~~l~ 45 (49)
T 3bj4_A 15 IGARLNRVEDKVTQLDQRLALITDMLHQLLS 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888777665543
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.32 E-value=2e+02 Score=22.39 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 162 DGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSA 195 (384)
Q Consensus 162 ~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~ 195 (384)
+..|..+=.....|..|+..||.+......+...
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555666666665555555544
No 65
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.14 E-value=1.4e+02 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 173 NVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 173 ~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
..|..|+..|+++.......+..++.+++.+.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444
No 66
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.75 E-value=1.6e+02 Score=21.03 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
|..++..|..+-..|..++..|+...+..+.+-.+-.+||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556666666666666666666666555555555555554
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.54 E-value=2.5e+02 Score=28.18 Aligned_cols=22 Identities=27% Similarity=0.064 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRL 182 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~L 182 (384)
+..++.+..+..+.+..++...
T Consensus 468 l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 468 LTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444444444433
No 68
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.99 E-value=1.4e+02 Score=28.97 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016690 190 RDQLSAMEDRLLSTE 204 (384)
Q Consensus 190 ~~ql~~meeRl~~~E 204 (384)
..++..|+..+..++
T Consensus 25 ~~~i~~L~~~l~~~~ 39 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQ 39 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 69
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.96 E-value=65 Score=21.06 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+||.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567778888888888888888874
No 70
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.93 E-value=1.1e+02 Score=20.30 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqq 186 (384)
|+..++.|-..+..|..|+.+|+.-.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 57788888888888888888887643
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.61 E-value=2.6e+02 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
...|..||..|+.....+...+..+|......|..--
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3345566666666666666666666665555554433
No 72
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.57 E-value=3.5e+02 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=28.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTE 204 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E 204 (384)
+..|+..|..+......|+..|+.+.+..++++.....++....
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~ 68 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQA 68 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 45666666667777777777777777777766666665554333
No 73
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.16 E-value=3.5e+02 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
|+.+++++.+....|...+.+|+.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 74
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.07 E-value=80 Score=20.75 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+||.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567778888888888888888874
No 75
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.77 E-value=2.7e+02 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.227 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 174 VLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
+|.+|+...+++...+..++..+...+..+|+.=.
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554444
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.60 E-value=69 Score=24.25 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQS 189 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~ 189 (384)
|+.++..|......|..|...|+++...+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.12 E-value=2.5e+02 Score=27.89 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016690 179 IVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 179 l~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+..|+++.+.+..++..+++++.
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444443
No 78
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.00 E-value=2.9e+02 Score=22.71 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKK 206 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~k 206 (384)
|..++..|+..+..|..-|..|.|.+-++...-.+...-+..+|.+
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 4556666666666666666666555555544444434444444433
No 79
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.80 E-value=2e+02 Score=29.46 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
.+..+++.|+.+++.+..+|..++.. ......++..+.+++..++....++-.-|
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888776542 12344555566666666665555544333
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.79 E-value=2e+02 Score=28.96 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQH---QQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq---qq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
.+..+++.|+.+++.+..+|..++.. ...+..++..+.+++..++.+...+-
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888765421 22334445555555555555444443
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.77 E-value=1.1e+02 Score=25.61 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
.+.|.-||..|.|+.++...++..+....+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 455666666666666666666555554443
No 82
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.72 E-value=2.5e+02 Score=21.81 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 175 LMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFLA 215 (384)
Q Consensus 175 L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FLa 215 (384)
|...|..|+++...++.++..+...+..+.++|..+..-|.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444445555555555555554443
No 83
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=24.36 E-value=1.5e+02 Score=20.90 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 177 AEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 177 ~El~~LrQqqq~~~~ql~~meeRl 200 (384)
..|..|.++...+-.+|.++|.|+
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566666555555555555543
No 84
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.21 E-value=90 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+||.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 567788888888888888888874
No 85
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.11 E-value=2.4e+02 Score=21.60 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.++..+++|......|+.-+++|--++..++. .|.+|+..+|.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~---KLKqRit~LE~ 46 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQ---KLKQRLTKVEK 46 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 45667777877777887777777655544333 23445555554
No 86
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=23.89 E-value=1.1e+02 Score=23.37 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
++..+++|+.-++.+..=|+.|.|..-..++.+..++.|+.
T Consensus 26 ID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle 66 (72)
T 2xu6_A 26 IEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLD 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544
No 87
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.66 E-value=86 Score=20.61 Aligned_cols=24 Identities=25% Similarity=0.413 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567778888888888888888874
No 88
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.57 E-value=94 Score=20.45 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+|+.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567778888888888888888874
No 89
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.55 E-value=2.4e+02 Score=22.09 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 174 VLMAEIVRLRQHQQQSRDQLSAMEDRL 200 (384)
Q Consensus 174 ~L~~El~~LrQqqq~~~~ql~~meeRl 200 (384)
.+..++..|.+++..++.++..++..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444444
No 90
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.32 E-value=1e+02 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSR 190 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~ 190 (384)
|..|+.+...|..|+..|+.++..+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444333
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.25 E-value=3.8e+02 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEK 205 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~ 205 (384)
.+.|..|+..|+.....+..++..+|.....+|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444444444444444444444444443
No 92
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.19 E-value=2.2e+02 Score=20.72 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 178 EIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 178 El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
.+.+|+|..-..-.+++.++.....+|+.+..+-..|
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678898888888889999888888887776654433
No 93
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.15 E-value=98 Score=20.21 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|=..+..|..|+.+|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567777787888888888887764
No 94
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.06 E-value=74 Score=19.55 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016690 167 RLKRDRNVLMAEIVRLRQHQ 186 (384)
Q Consensus 167 ~LKrd~~~L~~El~~LrQqq 186 (384)
.|.-++.+|.+.++.|+|..
T Consensus 4 alefendaleqkiaalkqki 23 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHH
Confidence 34444555555555555543
No 95
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.95 E-value=2.9e+02 Score=25.49 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
+...+..+|.+...|...|.+.+.+...+..++...+..+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~ 209 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA 209 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666655555555555444443
No 96
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.72 E-value=40 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
...|..++.++++.|. .++..|..++..|..+=.+|
T Consensus 14 I~~L~~~v~~~e~~Q~-------~ldq~Ld~Ie~QQ~ELe~~L 49 (64)
T 3t97_C 14 ITSLHREVEKVKLDQK-------RLDQELDFILSQQKELEDLL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443 33444444455555444444
No 97
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.69 E-value=3.1e+02 Score=22.24 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQ 208 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqq 208 (384)
|..+.-.|.+....+..|..+||+.-.....++.+++..+..+....+
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 445555566666677777777777666666677777776666554444
No 98
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=22.66 E-value=1.2e+02 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=3.4
Q ss_pred chHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVL 175 (384)
Q Consensus 161 l~~eie~LKrd~~~L 175 (384)
|..+++.||++.+.+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 456677777776633
No 99
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.54 E-value=3.2e+02 Score=22.79 Aligned_cols=10 Identities=10% Similarity=0.398 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 016690 193 LSAMEDRLLS 202 (384)
Q Consensus 193 l~~meeRl~~ 202 (384)
++.++..|..
T Consensus 73 vqeLqgEI~~ 82 (121)
T 3mq7_A 73 VEELEGEITT 82 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 100
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.03 E-value=2.9e+02 Score=26.72 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 171 DRNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQQQMM 211 (384)
Q Consensus 171 d~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kqqqm~ 211 (384)
+...|..-|.....+.+.++..+..++.+|+.++++..++.
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555566666666665554444333
No 101
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.02 E-value=1.9e+02 Score=19.68 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 016690 193 LSAMEDRLLSTEK 205 (384)
Q Consensus 193 l~~meeRl~~~E~ 205 (384)
+.+++..++.+|.
T Consensus 22 laaleselqalek 34 (48)
T 1g6u_A 22 LAALESELQALEK 34 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 102
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.73 E-value=4.2e+02 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 163 GELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 163 ~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
.+++.|+.....|..++..++.++......+.+++.|..
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888775
No 103
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.49 E-value=2.6e+02 Score=21.87 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016690 166 ERLKRDRNVLMAEIVRLRQH 185 (384)
Q Consensus 166 e~LKrd~~~L~~El~~LrQq 185 (384)
+.|......+..||..|++.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~e 60 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKE 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 104
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.31 E-value=3.5e+02 Score=27.59 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQH-----------QQQSRDQLSAMEDRLLSTEKKQQQMMTFL 214 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQq-----------qq~~~~ql~~meeRl~~~E~kqqqm~~FL 214 (384)
.+..+++.|+.+++.+..+|..++.. ...+..++..+.+++..++.+..++-.-|
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888776532 22445566666666666666555554433
No 105
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.23 E-value=2.4e+02 Score=22.05 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=26.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 160 GLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 201 (384)
Q Consensus 160 ~l~~eie~LKrd~~~L~~El~~LrQqqq~~~~ql~~meeRl~ 201 (384)
..+.-+..|......|..++..|..+...+..++..++..+.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777776666666665555555554
No 106
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.62 E-value=1.2e+02 Score=19.97 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 016690 161 LDGELERLKRDRNVLMAEIVRLRQ 184 (384)
Q Consensus 161 l~~eie~LKrd~~~L~~El~~LrQ 184 (384)
++..++.|-..+..|..|+.+|+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788888888888888888874
No 107
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.56 E-value=2.6e+02 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 172 RNVLMAEIVRLRQHQQQSRDQLSAMEDRLLSTEKKQ 207 (384)
Q Consensus 172 ~~~L~~El~~LrQqqq~~~~ql~~meeRl~~~E~kq 207 (384)
...|..|+..|+++......+++.+...+..++.+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777776666666666666666555443
No 108
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.26 E-value=71 Score=24.70 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 016690 168 LKRDRNVLMA 177 (384)
Q Consensus 168 LKrd~~~L~~ 177 (384)
|..++..|..
T Consensus 48 L~~eN~~L~~ 57 (78)
T 1gu4_A 48 LTAENERLQK 57 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 109
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.11 E-value=2.5e+02 Score=22.00 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016690 165 LERLKRDRNVLMAEIVRLRQHQQQSRDQLSAM 196 (384)
Q Consensus 165 ie~LKrd~~~L~~El~~LrQqqq~~~~ql~~m 196 (384)
+..++.....+..++..|+..+.....++..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l 36 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDL 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444444333
Done!