BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016692
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 12/108 (11%)
Query: 21 VPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQL 80
VPA FLTK + LV DP TD ++ W +F V+ +FA+++LP YFKHNN +SFVRQL
Sbjct: 17 VPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQL 75
Query: 81 NTYGFRKIV---------PDR--WEFANEFFKKGEKHLLCEIHRRKTA 117
N YGFRK+V P+R EF + F +G++ LL I R+ T+
Sbjct: 76 NMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 86.7 bits (213), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 11/104 (10%)
Query: 21 VPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQL 80
VPA FL K ++LVDD T+ ++ W +D +FV+ +FA++LLP +KHNN +SF+RQL
Sbjct: 4 VPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62
Query: 81 NTYGFRKIVP----------DRWEFANEFFKKGEKHLLCEIHRR 114
N YGF KI D EF++ FFK+ LL +I R+
Sbjct: 63 NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + +V+D + + + W + VV F +++LP YFKH+NF+SFVRQLN Y
Sbjct: 14 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 73
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 74 GWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + +V+D + + + W + VV F +++LP YFKH+NF+SFVRQLN Y
Sbjct: 4 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 63
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 64 GWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + +V+D + + + W + VV F +++LP YFKH+NF+SFVRQLN Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMY 61
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + V+D + + + W + VV F +++LP YFKH+NF+SFVRQLN Y
Sbjct: 4 AFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNXY 63
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 64 GWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + +V+D + + + W + VV F +++L YFKH+NF+SFVRQLN Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNMY 61
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTY 83
F+ K + +V+D + + + W + VV F +++L YFKH+NF+SFVRQLN Y
Sbjct: 2 AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNMY 61
Query: 84 GFRKIV-----------PDRWEFANE 98
G+ K+ RWEF NE
Sbjct: 62 GWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1NM5|A Chain A, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
pdb|1NM5|B Chain B, R. Rubrum Transhydrogenase (Di.Q132n)2(Diii)1 Asymmetric
Complex
Length = 384
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 59 FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEF 99
+A +L+P + N+ Q N G+R ++ +EFA F
Sbjct: 120 YAMELMPRISRANSMDILSSQSNLAGYRAVIDGAYEFARAF 160
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 2 ALMLDNCEGILLS-LDS-HKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEF 59
AL+L E ++ S LD H V + F ++D+PT +H V W + P E
Sbjct: 108 ALVLSRIEKVIFSALDKKHGGVVSVF-----NILDEPTLNHRVKWE--------YYPLEE 154
Query: 60 ARDLLPNYFK 69
A +LL +FK
Sbjct: 155 ASELLSEFFK 164
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 32 LVDDPTTDHVVSWGEDDTTFVVWRP---PEFARDLLPNYFKHNNFSSFVRQLNTYGFRKI 88
++D D+ VS D V +P + L PN +N S + Q ++GF +
Sbjct: 222 IMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDV 281
Query: 89 VPDRW 93
+ D+W
Sbjct: 282 LHDKW 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,433,354
Number of Sequences: 62578
Number of extensions: 367775
Number of successful extensions: 683
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 19
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)