Query 016692
Match_columns 384
No_of_seqs 242 out of 955
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 1.8E-36 3.9E-41 292.6 9.7 106 16-121 6-113 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 100.0 9.9E-35 2.1E-39 241.3 4.0 93 24-116 1-102 (103)
3 smart00415 HSF heat shock fact 100.0 5.9E-34 1.3E-38 238.7 6.1 92 23-114 3-105 (105)
4 COG5169 HSF1 Heat shock transc 100.0 2E-30 4.3E-35 251.5 5.4 106 17-122 5-120 (282)
5 PF00178 Ets: Ets-domain; Int 95.4 0.0052 1.1E-07 50.9 0.4 60 25-84 4-65 (85)
6 smart00413 ETS erythroblast tr 93.6 0.063 1.4E-06 45.0 3.1 57 27-83 6-64 (87)
7 PF07407 Seadorna_VP6: Seadorn 92.4 0.14 3E-06 52.3 4.0 28 205-232 32-59 (420)
8 PF06156 DUF972: Protein of un 89.6 0.38 8.3E-06 41.5 3.5 30 204-233 28-57 (107)
9 PRK13169 DNA replication intia 88.6 0.49 1.1E-05 41.2 3.4 29 204-232 28-56 (110)
10 KOG3806 Predicted transcriptio 88.2 0.53 1.1E-05 44.2 3.6 43 20-62 66-109 (177)
11 PF02183 HALZ: Homeobox associ 88.1 0.84 1.8E-05 33.8 4.0 31 204-234 11-41 (45)
12 smart00338 BRLZ basic region l 87.5 0.92 2E-05 34.9 4.1 32 204-235 32-63 (65)
13 PRK13922 rod shape-determining 87.3 1.2 2.6E-05 43.0 5.6 34 205-238 69-102 (276)
14 PRK14872 rod shape-determining 87.2 1.1 2.5E-05 45.7 5.6 33 205-237 57-89 (337)
15 KOG4196 bZIP transcription fac 86.5 2.3 5.1E-05 38.3 6.6 40 204-243 80-119 (135)
16 PF02344 Myc-LZ: Myc leucine z 85.3 1.5 3.3E-05 30.6 3.7 28 208-235 4-31 (32)
17 KOG3119 Basic region leucine z 85.1 1.2 2.5E-05 43.9 4.4 33 205-237 222-254 (269)
18 PF07334 IFP_35_N: Interferon- 84.5 1.5 3.3E-05 36.1 4.1 29 207-235 2-30 (76)
19 PF06005 DUF904: Protein of un 83.7 3.7 8.1E-05 33.2 5.9 29 212-240 39-67 (72)
20 PF08961 DUF1875: Domain of un 82.0 0.43 9.4E-06 46.4 0.0 44 204-247 135-179 (243)
21 PF08172 CASP_C: CASP C termin 81.6 3 6.6E-05 40.8 5.6 43 205-248 93-139 (248)
22 TIGR00219 mreC rod shape-deter 80.9 3.3 7.1E-05 41.0 5.7 29 205-233 66-94 (283)
23 smart00340 HALZ homeobox assoc 79.8 2.1 4.6E-05 31.8 3.0 19 207-225 14-32 (44)
24 PRK00888 ftsB cell division pr 79.8 3.3 7.2E-05 35.4 4.7 30 204-233 33-62 (105)
25 KOG4343 bZIP transcription fac 79.2 1.6 3.5E-05 47.3 3.0 29 203-231 307-335 (655)
26 PF00170 bZIP_1: bZIP transcri 77.8 3.7 8.1E-05 31.5 4.0 32 207-238 28-59 (64)
27 TIGR02894 DNA_bind_RsfA transc 73.3 8.4 0.00018 35.9 5.7 40 205-244 111-150 (161)
28 PF12709 Kinetocho_Slk19: Cent 72.5 9.8 0.00021 32.1 5.4 38 205-242 49-86 (87)
29 PF00170 bZIP_1: bZIP transcri 71.8 11 0.00023 29.0 5.2 32 203-234 31-62 (64)
30 cd00068 GGL G protein gamma su 70.7 5.5 0.00012 30.6 3.3 32 216-247 3-38 (57)
31 PF01166 TSC22: TSC-22/dip/bun 70.2 4.6 9.9E-05 31.9 2.8 24 203-226 19-42 (59)
32 TIGR03752 conj_TIGR03752 integ 68.8 9.4 0.0002 40.9 5.6 23 204-226 72-94 (472)
33 KOG4571 Activating transcripti 68.0 7.7 0.00017 39.2 4.6 35 204-238 254-288 (294)
34 KOG4005 Transcription factor X 67.7 9.1 0.0002 38.0 4.9 22 204-225 96-117 (292)
35 smart00224 GGL G protein gamma 67.6 4.7 0.0001 31.5 2.4 33 215-247 2-38 (63)
36 PF05377 FlaC_arch: Flagella a 67.2 16 0.00035 28.4 5.2 37 205-241 7-43 (55)
37 PF06005 DUF904: Protein of un 66.3 21 0.00046 28.8 6.0 37 207-243 20-63 (72)
38 smart00338 BRLZ basic region l 65.6 21 0.00045 27.4 5.6 38 205-242 26-63 (65)
39 TIGR02449 conserved hypothetic 63.8 18 0.00039 29.0 5.1 32 204-235 6-37 (65)
40 PF07716 bZIP_2: Basic region 63.0 15 0.00033 27.4 4.4 28 206-233 26-53 (54)
41 PF10883 DUF2681: Protein of u 62.6 17 0.00036 30.7 4.9 32 206-237 24-55 (87)
42 PHA00728 hypothetical protein 62.6 8.3 0.00018 34.8 3.2 27 211-237 4-30 (151)
43 COG4467 Regulator of replicati 61.7 6.4 0.00014 34.6 2.3 27 204-230 28-54 (114)
44 PF14197 Cep57_CLD_2: Centroso 61.4 13 0.00028 29.8 3.9 29 205-233 40-68 (69)
45 PF14645 Chibby: Chibby family 60.4 19 0.0004 31.6 5.0 36 209-244 68-103 (116)
46 PF06632 XRCC4: DNA double-str 59.1 19 0.00041 37.0 5.6 33 205-237 137-169 (342)
47 PRK14127 cell division protein 59.0 16 0.00035 31.9 4.3 33 205-237 30-62 (109)
48 PF04977 DivIC: Septum formati 58.9 11 0.00024 29.2 3.1 30 204-233 23-52 (80)
49 PF07716 bZIP_2: Basic region 58.6 11 0.00024 28.1 2.9 24 204-227 31-54 (54)
50 PF00631 G-gamma: GGL domain; 57.4 19 0.00041 28.2 4.1 31 213-243 3-37 (68)
51 KOG4797 Transcriptional regula 56.5 8.3 0.00018 34.1 2.2 38 205-249 74-112 (123)
52 PRK09413 IS2 repressor TnpA; R 56.0 18 0.0004 31.0 4.2 30 206-235 72-101 (121)
53 KOG0977 Nuclear envelope prote 55.2 16 0.00035 39.8 4.5 32 204-235 161-192 (546)
54 KOG4196 bZIP transcription fac 53.0 57 0.0012 29.7 6.9 47 206-252 75-124 (135)
55 PRK13923 putative spore coat p 53.0 33 0.0007 32.3 5.6 40 205-244 111-150 (170)
56 PF06156 DUF972: Protein of un 51.5 28 0.00061 30.1 4.6 37 204-240 21-57 (107)
57 smart00340 HALZ homeobox assoc 50.5 19 0.00041 26.9 2.9 27 208-234 8-34 (44)
58 PF07412 Geminin: Geminin; In 49.2 22 0.00048 34.2 4.0 32 205-236 118-149 (200)
59 COG3074 Uncharacterized protei 48.8 38 0.00082 28.0 4.6 35 205-239 39-73 (79)
60 PF14775 NYD-SP28_assoc: Sperm 48.1 26 0.00057 27.4 3.5 23 207-229 35-57 (60)
61 PF07676 PD40: WD40-like Beta 44.3 9.1 0.0002 25.9 0.4 24 31-54 3-26 (39)
62 PF11382 DUF3186: Protein of u 44.2 46 0.001 33.3 5.5 32 206-237 40-71 (308)
63 PF07989 Microtub_assoc: Micro 43.8 56 0.0012 26.6 5.0 33 206-238 37-69 (75)
64 PRK10884 SH3 domain-containing 43.7 42 0.0009 32.1 4.9 28 207-234 134-161 (206)
65 TIGR00219 mreC rod shape-deter 43.4 47 0.001 32.9 5.4 33 208-240 62-94 (283)
66 PF12711 Kinesin-relat_1: Kine 42.7 48 0.001 28.0 4.5 29 208-236 27-68 (86)
67 PRK15422 septal ring assembly 42.3 71 0.0015 26.7 5.4 26 217-242 51-76 (79)
68 PF04999 FtsL: Cell division p 42.0 39 0.00084 27.7 3.9 47 205-252 42-88 (97)
69 PF11382 DUF3186: Protein of u 41.9 56 0.0012 32.8 5.7 41 207-247 34-74 (308)
70 PF11577 NEMO: NF-kappa-B esse 40.4 79 0.0017 25.5 5.3 36 205-243 6-41 (68)
71 PF14916 CCDC92: Coiled-coil d 38.9 12 0.00026 29.6 0.4 23 206-228 22-44 (60)
72 PRK13169 DNA replication intia 38.9 57 0.0012 28.5 4.6 35 204-238 21-55 (110)
73 PRK10884 SH3 domain-containing 38.8 72 0.0016 30.5 5.7 36 204-239 124-159 (206)
74 PRK13922 rod shape-determining 38.5 44 0.00095 32.3 4.3 34 209-242 66-99 (276)
75 PRK10803 tol-pal system protei 38.4 63 0.0014 31.6 5.4 45 203-247 59-103 (263)
76 PF10224 DUF2205: Predicted co 37.9 31 0.00067 28.7 2.7 24 203-226 35-58 (80)
77 TIGR02894 DNA_bind_RsfA transc 37.9 92 0.002 29.2 6.0 31 208-238 100-130 (161)
78 KOG3119 Basic region leucine z 37.8 85 0.0018 31.0 6.2 42 208-249 218-259 (269)
79 PF14645 Chibby: Chibby family 37.1 48 0.001 29.1 3.9 25 206-230 72-96 (116)
80 PF12808 Mto2_bdg: Micro-tubul 36.7 58 0.0013 25.1 3.8 26 208-233 25-50 (52)
81 COG2433 Uncharacterized conser 36.7 47 0.001 36.9 4.5 31 205-235 436-466 (652)
82 PRK14127 cell division protein 36.1 80 0.0017 27.6 5.0 33 204-236 36-68 (109)
83 PF12017 Tnp_P_element: Transp 35.7 1.1E+02 0.0024 30.0 6.5 30 207-236 13-42 (236)
84 PF10845 DUF2576: Protein of u 34.7 43 0.00092 25.4 2.7 21 213-233 12-32 (48)
85 PF14077 WD40_alt: Alternative 34.4 38 0.00082 25.8 2.4 31 215-245 14-44 (48)
86 TIGR02209 ftsL_broad cell divi 33.6 1.3E+02 0.0029 23.7 5.7 48 204-252 30-77 (85)
87 PF06305 DUF1049: Protein of u 33.0 44 0.00096 25.4 2.7 23 209-231 45-67 (68)
88 PF05529 Bap31: B-cell recepto 31.1 84 0.0018 28.9 4.7 33 206-238 155-187 (192)
89 PF12325 TMF_TATA_bd: TATA ele 30.9 1.3E+02 0.0028 26.6 5.6 13 208-220 33-45 (120)
90 PF08227 DASH_Hsk3: DASH compl 30.6 1.9E+02 0.0042 21.7 5.6 40 206-246 3-42 (45)
91 TIGR03752 conj_TIGR03752 integ 30.5 72 0.0016 34.4 4.6 44 204-247 65-108 (472)
92 PF05377 FlaC_arch: Flagella a 29.5 1.1E+02 0.0025 23.8 4.4 33 204-236 13-45 (55)
93 COG1792 MreC Cell shape-determ 29.3 1.1E+02 0.0024 30.5 5.4 29 207-235 68-96 (284)
94 PF11544 Spc42p: Spindle pole 29.1 1.6E+02 0.0035 24.5 5.4 34 204-237 11-44 (76)
95 PF02183 HALZ: Homeobox associ 28.8 1.6E+02 0.0034 21.8 4.9 33 206-238 6-38 (45)
96 PRK10265 chaperone-modulator p 28.7 78 0.0017 26.7 3.7 25 206-230 72-96 (101)
97 PF10458 Val_tRNA-synt_C: Valy 28.3 85 0.0018 24.4 3.6 27 209-235 1-27 (66)
98 PF13118 DUF3972: Protein of u 28.2 1.5E+02 0.0032 26.8 5.5 41 207-247 80-123 (126)
99 PF15294 Leu_zip: Leucine zipp 28.2 1.1E+02 0.0024 30.8 5.3 31 207-237 127-157 (278)
100 KOG0837 Transcriptional activa 28.0 98 0.0021 31.2 4.8 42 206-247 228-269 (279)
101 PF07558 Shugoshin_N: Shugoshi 27.5 62 0.0013 24.0 2.6 25 204-228 20-44 (46)
102 PF15390 DUF4613: Domain of un 27.3 1.5E+02 0.0032 33.3 6.3 41 209-249 548-588 (671)
103 KOG0286 G-protein beta subunit 26.5 59 0.0013 33.5 3.0 37 211-247 1-38 (343)
104 PF07106 TBPIP: Tat binding pr 26.3 76 0.0017 28.6 3.5 30 204-233 78-107 (169)
105 PF13815 Dzip-like_N: Iguana/D 26.0 97 0.0021 26.7 3.9 15 214-228 82-96 (118)
106 PF01486 K-box: K-box region; 26.0 1.1E+02 0.0023 25.4 4.1 30 204-233 11-40 (100)
107 cd07429 Cby_like Chibby, a nuc 25.7 1.6E+02 0.0035 25.8 5.2 19 207-225 74-92 (108)
108 PF15058 Speriolin_N: Sperioli 25.6 95 0.0021 30.0 4.0 21 205-225 12-32 (200)
109 PF04728 LPP: Lipoprotein leuc 25.1 2.1E+02 0.0045 22.5 5.2 36 204-239 16-51 (56)
110 PF06305 DUF1049: Protein of u 25.1 91 0.002 23.6 3.2 26 213-238 42-67 (68)
111 PF11594 Med28: Mediator compl 25.1 1.4E+02 0.0031 26.2 4.7 33 207-242 37-69 (106)
112 PF07407 Seadorna_VP6: Seadorn 25.1 87 0.0019 32.7 3.9 40 205-244 39-87 (420)
113 PF04340 DUF484: Protein of un 24.9 2E+02 0.0043 27.1 6.2 44 204-247 46-89 (225)
114 COG2919 Septum formation initi 24.8 80 0.0017 27.4 3.2 31 204-234 56-86 (117)
115 COG4026 Uncharacterized protei 24.5 1.4E+02 0.003 29.8 5.0 31 205-235 142-172 (290)
116 PF07798 DUF1640: Protein of u 24.5 1.5E+02 0.0032 27.2 5.0 34 205-238 73-107 (177)
117 PF11221 Med21: Subunit 21 of 23.7 1.5E+02 0.0033 26.4 4.9 36 206-241 105-140 (144)
118 KOG3650 Predicted coiled-coil 23.5 53 0.0012 28.8 1.8 19 207-225 79-97 (120)
119 PRK00888 ftsB cell division pr 23.3 1.8E+02 0.0039 24.9 5.0 33 206-238 28-60 (105)
120 COG3074 Uncharacterized protei 23.2 1.8E+02 0.0039 24.1 4.6 34 205-238 18-51 (79)
121 PF00981 Rota_NS53: Rotavirus 23.0 64 0.0014 34.6 2.6 19 230-248 337-355 (488)
122 PHA03155 hypothetical protein; 22.9 1E+02 0.0022 27.4 3.4 26 205-230 8-33 (115)
123 COG1792 MreC Cell shape-determ 22.6 1.3E+02 0.0028 30.0 4.6 41 207-247 61-101 (284)
124 PF13870 DUF4201: Domain of un 22.5 2.4E+02 0.0052 25.6 6.0 39 206-244 43-81 (177)
125 PF03980 Nnf1: Nnf1 ; InterPr 22.3 1.2E+02 0.0027 25.4 3.8 30 204-233 79-108 (109)
126 TIGR02449 conserved hypothetic 22.1 2E+02 0.0044 23.1 4.7 29 206-234 15-43 (65)
127 KOG4119 G protein gamma subuni 22.0 1.8E+02 0.004 23.8 4.5 35 213-247 8-46 (71)
128 PF13815 Dzip-like_N: Iguana/D 21.8 1.4E+02 0.003 25.7 4.1 27 207-233 82-108 (118)
129 KOG4497 Uncharacterized conser 21.7 91 0.002 32.8 3.3 75 25-104 163-257 (447)
130 PF15058 Speriolin_N: Sperioli 21.7 1.3E+02 0.0028 29.1 4.1 27 207-233 7-33 (200)
131 KOG3741 Poly(A) ribonuclease s 21.5 35 0.00076 37.7 0.4 39 20-61 551-589 (655)
132 PF00512 HisKA: His Kinase A ( 21.4 1.6E+02 0.0034 21.7 3.8 28 216-243 37-64 (68)
133 KOG0483 Transcription factor H 21.2 81 0.0017 30.2 2.7 32 205-236 119-150 (198)
134 PF11853 DUF3373: Protein of u 21.0 73 0.0016 34.5 2.6 31 209-239 28-58 (489)
135 PF13591 MerR_2: MerR HTH fami 20.6 83 0.0018 25.5 2.3 21 206-226 64-84 (84)
136 PF04849 HAP1_N: HAP1 N-termin 20.2 1.1E+02 0.0023 31.4 3.4 39 201-239 163-201 (306)
137 PF04977 DivIC: Septum formati 20.2 2.6E+02 0.0056 21.4 5.0 33 206-238 18-50 (80)
138 PF15463 ECM11: Extracellular 20.1 1.2E+02 0.0026 26.9 3.4 31 209-239 109-139 (139)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=1.8e-36 Score=292.56 Aligned_cols=106 Identities=58% Similarity=1.033 Sum_probs=99.8
Q ss_pred cCCCCCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee--CCce
Q 016692 16 DSHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV--PDRW 93 (384)
Q Consensus 16 ~s~k~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~--~d~~ 93 (384)
....+.+.+|+.|||+||+||.+++||+|+++|++|||||+.+|.+.+||+||||+||+|||||||+|||+|+. +++|
T Consensus 6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w 85 (304)
T KOG0627|consen 6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW 85 (304)
T ss_pred ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eEecCCcCCCChhhhccccccCCCCCCc
Q 016692 94 EFANEFFKKGEKHLLCEIHRRKTAQPQV 121 (384)
Q Consensus 94 eF~He~FrRG~p~LL~~IkRRK~~~~~~ 121 (384)
||+|++|+||+++||++|+|||......
T Consensus 86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~ 113 (304)
T KOG0627|consen 86 EFSNPCFVRGQKLLLKNIKRRKSASRIF 113 (304)
T ss_pred eecChhHhcChHHHHHHHhhhccccCCc
Confidence 9999999999999999999999876544
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=9.9e-35 Score=241.27 Aligned_cols=93 Identities=47% Similarity=1.032 Sum_probs=81.7
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeeeCCc---------ee
Q 016692 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WE 94 (384)
Q Consensus 24 ~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~~d~---------~e 94 (384)
.||.|||+||+|++++++|+|++||++|||+|+++|+++|||+||+|+||+||+||||+|||+|+..+. |+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 499999999999999999999999999999999999999999999999999999999999999998542 99
Q ss_pred EecCCcCCCChhhhccccccCC
Q 016692 95 FANEFFKKGEKHLLCEIHRRKT 116 (384)
Q Consensus 95 F~He~FrRG~p~LL~~IkRRK~ 116 (384)
|+|++|+||++++|..|+||+.
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999875
No 3
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=5.9e-34 Score=238.72 Aligned_cols=92 Identities=62% Similarity=1.181 Sum_probs=88.8
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeeeC-----------C
Q 016692 23 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVP-----------D 91 (384)
Q Consensus 23 ~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~~-----------d 91 (384)
..|+.|||+||+|+++++||+|++||++|+|.|+++|.++|||+||+|++|+||+||||+|||+|+.. +
T Consensus 3 ~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~ 82 (105)
T smart00415 3 PPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSD 82 (105)
T ss_pred CcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred ceeEecCCcCCCChhhhcccccc
Q 016692 92 RWEFANEFFKKGEKHLLCEIHRR 114 (384)
Q Consensus 92 ~~eF~He~FrRG~p~LL~~IkRR 114 (384)
.|+|+|++|+||+++||..|+||
T Consensus 83 ~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 83 QWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred ceEEECcCccCcCHHHHHhCcCC
Confidence 79999999999999999999986
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.96 E-value=2e-30 Score=251.47 Aligned_cols=106 Identities=43% Similarity=0.835 Sum_probs=96.6
Q ss_pred CCCCCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee-C-----
Q 016692 17 SHKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV-P----- 90 (384)
Q Consensus 17 s~k~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~-~----- 90 (384)
+....+..|+.|||+||+|+++.++|+|++||++|||+|+++|.+.|||+||||+||+|||||||+|||+||. .
T Consensus 5 ~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~ 84 (282)
T COG5169 5 SRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRS 84 (282)
T ss_pred cCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCccccc
Confidence 4455567899999999999999999999999999999999999999999999999999999999999999998 2
Q ss_pred ----CceeEecCCcCCCChhhhccccccCCCCCCcc
Q 016692 91 ----DRWEFANEFFKKGEKHLLCEIHRRKTAQPQVA 122 (384)
Q Consensus 91 ----d~~eF~He~FrRG~p~LL~~IkRRK~~~~~~~ 122 (384)
+.|||.|++|++|..++|++|+|+|.......
T Consensus 85 ~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~ 120 (282)
T COG5169 85 YYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD 120 (282)
T ss_pred ccchhheeecCchhccCcHHHHHHhhhhhcCccccc
Confidence 24999999999999999999999887755443
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.36 E-value=0.0052 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhc-cCCCCCCCccchhhcccccc
Q 016692 25 FLTKTYQLVDDPTTDHVVSWGE-DDTTFVVWRPPEFARDLL-PNYFKHNNFSSFVRQLNTYG 84 (384)
Q Consensus 25 Fl~KLy~mLdDp~~~~IIsWs~-dG~sFVI~d~~~F~~~VL-PkyFkhsnfsSFvRQLN~YG 84 (384)
+..=|.++|+|++..++|.|.+ ++..|.|.|++++++--- -+--..-+|.++-|-|..|.
T Consensus 4 Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 4 LWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence 4455778999999999999999 999999999999986421 12223457889999888763
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.65 E-value=0.063 Score=45.03 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=42.2
Q ss_pred HHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 27 TKTYQLVDDPTTDHVVSWGE-DDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 27 ~KLy~mLdDp~~~~IIsWs~-dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
.=|.++|.|++..++|+|.+ ++..|.+.|+++.++.-=. +-=..-+|..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 44778999999999999998 6889999999887764221 111234677777777766
No 7
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=92.43 E-value=0.14 Score=52.28 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mK 232 (384)
....+|.+||++|||||+.|+.|+++++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999874
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=89.57 E-value=0.38 Score=41.51 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=23.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
...+..|.|||.+||.||..|+.-|.+..+
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888877777766
No 9
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.58 E-value=0.49 Score=41.23 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=23.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mK 232 (384)
...+.+|.|||-+|+.||..|+..|.+++
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678888999999999998888888663
No 10
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=88.18 E-value=0.53 Score=44.21 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhh
Q 016692 20 SVPAPFLTKTYQLVDDPTTDHVVSWGE-DDTTFVVWRPPEFARD 62 (384)
Q Consensus 20 ~vP~~Fl~KLy~mLdDp~~~~IIsWs~-dG~sFVI~d~~~F~~~ 62 (384)
+.+.....=|-++|+|++..++|.|.. +|--|.+.|+++-++.
T Consensus 66 sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArl 109 (177)
T KOG3806|consen 66 SGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARL 109 (177)
T ss_pred CchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHH
Confidence 344455666777899999999999999 7889999999998873
No 11
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.10 E-value=0.84 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=26.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
.....+|..||++|.+||..|..|+..++..
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999888754
No 12
>smart00338 BRLZ basic region leucin zipper.
Probab=87.54 E-value=0.92 Score=34.94 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=21.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
...+..|..+|+.|+.++..|..|+..++.++
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777777777777777777766654
No 13
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.26 E-value=1.2 Score=43.04 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
....+|.+||++|++||..|..|+.+++.+-.+.
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en 102 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAEN 102 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999776555443
No 14
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=87.17 E-value=1.1 Score=45.70 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
.....|.+||++||+||..|..|+.+++.+-.+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~E 89 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQT 89 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999997765544
No 15
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.53 E-value=2.3 Score=38.32 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=34.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQ 243 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~ 243 (384)
...-..|-.|.|+|+.||+.+..|+.-.|..|..+..|-.
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445678889999999999999999999999999988876
No 16
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=85.29 E-value=1.5 Score=30.62 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
..|..|-|.|||..+.|...|.++|.-|
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3688899999999999999999999876
No 17
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=85.09 E-value=1.2 Score=43.88 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=23.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
..+..|..||++||+++.+|..||.++|.+...
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777777777777777777777766544
No 18
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=84.53 E-value=1.5 Score=36.06 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+.+|.+||.||++|...|.-||.++++-+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35899999999999999999999988853
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.66 E-value=3.7 Score=33.20 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 212 EDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 212 eENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
++|+.|+.+|..|..|....+...+.||.
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544
No 20
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=81.98 E-value=0.43 Score=46.35 Aligned_cols=44 Identities=32% Similarity=0.327 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcC
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK-LYNDIIYFVQNHVK 247 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk-lcN~Ii~FL~n~v~ 247 (384)
...+..|..||||||+||..|..|=+++.| -..+=+++=..+|.
T Consensus 135 rrlVe~L~aeNErLr~EnkqL~ae~arL~k~~~eke~~~dadfve 179 (243)
T PF08961_consen 135 RRLVEFLLAENERLRRENKQLKAENARLLKGPVEKELDVDADFVE 179 (243)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhccccchh
Confidence 466788999999999999999999999954 34444444444444
No 21
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=81.56 E-value=3 Score=40.80 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=36.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcCC
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRK----LYNDIIYFVQNHVKP 248 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKk----lcN~Ii~FL~n~v~p 248 (384)
....+|.+|+.++..++..|.+|+..+|+ ||++| .|||.|=.+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi-RylqSY~~~ 139 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI-RYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc
Confidence 45678999999999999999999999984 88886 788998874
No 22
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=80.89 E-value=3.3 Score=40.98 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=22.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
..+.+|.+||++||+|+..|..++..+..
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~ 94 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQ 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999988777776544
No 23
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.83 E-value=2.1 Score=31.79 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLM 225 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~ 225 (384)
...|.|||.||+||.+.|+
T Consensus 14 ce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 14 CESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777765554
No 24
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.82 E-value=3.3 Score=35.43 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=27.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
...+.++.+||++|+.+|..|..|+.++|.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 567889999999999999999999999986
No 25
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=79.19 E-value=1.6 Score=47.26 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=25.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHM 231 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~m 231 (384)
+...+.+|..|||.||+||+.|++.|..+
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 35677899999999999999999988765
No 26
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.77 E-value=3.7 Score=31.53 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
+..|.++.+.|..+|..|..|+..+++.|..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665554
No 27
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.29 E-value=8.4 Score=35.86 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=31.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
.....|.++|+.|.+||..|.+++..++.=|..||..|-.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888888888888888888888888887753
No 28
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.53 E-value=9.8 Score=32.15 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
..+..|..+|+.|.+||..|..+|..++.==+++|.+|
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999998888887765
No 29
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.85 E-value=11 Score=28.98 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=28.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
+...+..|..||+.|+.++..|..|+..++..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999998864
No 30
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=70.67 E-value=5.5 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Q 016692 216 RLRRSNNMLMSELA----HMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 216 rLRreN~~L~~ELa----~mKklcN~Ii~FL~n~v~ 247 (384)
++|++|..|+.||. .+.+-|.+|+.|...|..
T Consensus 3 ~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~ 38 (57)
T cd00068 3 QLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAE 38 (57)
T ss_pred HHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 45555556665554 455678999999998853
No 31
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.17 E-value=4.6 Score=31.88 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=18.3
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMS 226 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ 226 (384)
+..++.+|.+.|.+|..||..|++
T Consensus 19 LK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 19 LKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677888888888888887765
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.81 E-value=9.4 Score=40.85 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMS 226 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ 226 (384)
...+..|..||++|++||+.|++
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888899999999998866
No 33
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=68.01 E-value=7.7 Score=39.17 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
...+.+|+.+|++||..-..|-+|+..||++.-+.
T Consensus 254 ~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 254 LGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999986543
No 34
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.68 E-value=9.1 Score=38.01 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLM 225 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~ 225 (384)
...+.+|.||||+|+-||..|+
T Consensus 96 e~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 96 EYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998887765
No 35
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=67.59 E-value=4.7 Score=31.51 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcC
Q 016692 215 ERLRRSNNMLMSELA----HMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 215 ErLRreN~~L~~ELa----~mKklcN~Ii~FL~n~v~ 247 (384)
+++|++|+.|+.||. .+.+-|.+|+.|...|..
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~ 38 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAE 38 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCC
Confidence 345556666666655 455678999999987543
No 36
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.22 E-value=16 Score=28.44 Aligned_cols=37 Identities=5% Similarity=0.264 Sum_probs=29.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
..+..|+-...-+|+||..|+.++..+++-..+|+.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888777654
No 37
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.35 E-value=21 Score=28.84 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRS-------NNMLMSELAHMRKLYNDIIYFVQ 243 (384)
Q Consensus 207 ~~~LseENErLRre-------N~~L~~ELa~mKklcN~Ii~FL~ 243 (384)
++.|..||++|+.+ |..|..|..++|.-.+..-.-|.
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555 77777777777766655444333
No 38
>smart00338 BRLZ basic region leucin zipper.
Probab=65.64 E-value=21 Score=27.42 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
..+..|.++.+.|..+|..|..++..++.-+..+-..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999887765443
No 39
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.82 E-value=18 Score=28.99 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=23.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
...+..|..--++|++||..|+.+++.++.--
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER 37 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREER 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888777765543
No 40
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=63.03 E-value=15 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
...+|..+.+.|..+|..|..+++.|++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888888888888888877764
No 41
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=62.62 E-value=17 Score=30.70 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
++..+.+||++|..||++|..|-+...+..++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998888777643
No 42
>PHA00728 hypothetical protein
Probab=62.58 E-value=8.3 Score=34.78 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 211 SEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 211 seENErLRreN~~L~~ELa~mKklcN~ 237 (384)
..|.|+|||||..|.+.|+.+.-+.|+
T Consensus 4 ~teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 468899999999999999988877654
No 43
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=61.75 E-value=6.4 Score=34.63 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=21.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
...+..|.|||-.||-||..|+.-|+.
T Consensus 28 K~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 28 KQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 466778888888888888888877766
No 44
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.42 E-value=13 Score=29.82 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
.++...-+||.+|+.||..|..||.+.+.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677778888888888888888877653
No 45
>PF14645 Chibby: Chibby family
Probab=60.40 E-value=19 Score=31.61 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
...+|+.+||++|..|..|-.-+|-.|+=|+.+|..
T Consensus 68 ~~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 68 ADGEENQRLRKENQQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666667767766653
No 46
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=59.13 E-value=19 Score=37.00 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
.....|.++|++|.++|..|.+|+.++++.+++
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~ 169 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEK 169 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888887777776643
No 47
>PRK14127 cell division protein GpsB; Provisional
Probab=59.00 E-value=16 Score=31.91 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=18.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
..+..+.+|.|+|-+||..|..|+.++++...+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666555554444
No 48
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.87 E-value=11 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=24.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
...+.+|..++++|+.+|..|..|+.++++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466788888888888888888888888844
No 49
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=58.56 E-value=11 Score=28.13 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=20.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSE 227 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~E 227 (384)
...+..|..||+.|+.++..|..|
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999988876
No 50
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=57.38 E-value=19 Score=28.19 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 016692 213 DNERLRRSNNMLMSELA----HMRKLYNDIIYFVQ 243 (384)
Q Consensus 213 ENErLRreN~~L~~ELa----~mKklcN~Ii~FL~ 243 (384)
+.++|+||+..|..||. .+.+-|.+|+.|+.
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~ 37 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIKVSKACKELIEYCE 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc
Confidence 34556666666666554 55678899999988
No 51
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=56.50 E-value=8.3 Score=34.06 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=21.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCC
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLY-NDIIYFVQNHVKPV 249 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklc-N~Ii~FL~n~v~p~ 249 (384)
.++.+|.+.|.+|++||..| |.+. ++-+.+++....|+
T Consensus 74 ~qI~eL~er~~~Le~EN~lL-------k~~~spe~L~ql~~~~~~q 112 (123)
T KOG4797|consen 74 EQIRELEERNSALERENSLL-------KTLASPEQLAQLPAQLSPQ 112 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhCCHHHHHHHHHhcccc
Confidence 34445555555555555544 4443 77777887766554
No 52
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=56.00 E-value=18 Score=31.00 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
....+.+||++|++++..|.-|..=+||..
T Consensus 72 ~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 72 ELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999998777643
No 53
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.22 E-value=16 Score=39.82 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=28.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
......|.+|..+|++||..|..+|.++|++.
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35567899999999999999999999999854
No 54
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.03 E-value=57 Score=29.68 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcCCCCCC
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKL---YNDIIYFVQNHVKPVTPS 252 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKkl---cN~Ii~FL~n~v~p~~~~ 252 (384)
+--+|..||-.||.+...|..|.++|+.- |..-++=|++....++.+
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~~~~~ 124 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVSVGAS 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 34578888889999999999999888774 444445555554333443
No 55
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=53.00 E-value=33 Score=32.28 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=35.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
..+..|.++|+.|..+|..|..++.-++.-|..+|..|..
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999888854
No 56
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.53 E-value=28 Score=30.14 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
...+.+|.++...|-.||..|+-|-.++|++..++-.
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888888888999999999999998887744
No 57
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.48 E-value=19 Score=26.90 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
.-|..=-|.|-.||..|..||+.+|.+
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346666788999999999999998865
No 58
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=49.17 E-value=22 Score=34.15 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..+.+-.+||++|.++...|..|+++||+--.
T Consensus 118 ~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~ 149 (200)
T PF07412_consen 118 KALEEALEENEKLHKEIEQKDEEIAKLKEENE 149 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999999999988887543
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.78 E-value=38 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
....++.+-+|.|++||..|.+|+.--+.....++
T Consensus 39 ~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 39 QEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777888888777776655544443
No 60
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=48.11 E-value=26 Score=27.37 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELA 229 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa 229 (384)
..+|..|++.|+++|..|+.=|.
T Consensus 35 R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 35 RAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888887776544
No 61
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=44.29 E-value=9.1 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=17.2
Q ss_pred HhhcCCCCCCceEEcCCCCeEEEe
Q 016692 31 QLVDDPTTDHVVSWGEDDTTFVVW 54 (384)
Q Consensus 31 ~mLdDp~~~~IIsWs~dG~sFVI~ 54 (384)
++++++..+....|++||+.|+..
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEE
Confidence 456667777778999999988765
No 62
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=44.16 E-value=46 Score=33.34 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
+..+|.+||++|+.|+..|..++...++.-+.
T Consensus 40 ~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 40 QFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444433
No 63
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=43.80 E-value=56 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
...++..||-.|+-++..|.+||...+++..+.
T Consensus 37 ~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 37 SIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999988877654
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.71 E-value=42 Score=32.12 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+|.+||++|++++..+..|+..++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666665544433
No 65
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.41 E-value=47 Score=32.94 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
.+--.+..+|++||..|+.|++++++..+....
T Consensus 62 ~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~ 94 (283)
T TIGR00219 62 SENLKDVNNLEYENYKLRQELLKKNQQLEILTQ 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999999999988666665544
No 66
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=42.69 E-value=48 Score=27.97 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.3
Q ss_pred hhhHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLR-------------RSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 208 ~~LseENErLR-------------reN~~L~~ELa~mKklcN 236 (384)
.+|.+|++-|| -||..|+.|+.++|.+|.
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888777 588899999999999983
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.27 E-value=71 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 217 LRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 217 LRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
|+++|..|..|+..-+...+.|+.-|
T Consensus 51 L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777776666666665544
No 68
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=41.98 E-value=39 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPS 252 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~p~~~~ 252 (384)
..+..+..|+++|+.||..|.-|.+.+... +.|-.+=.+.++=+.|+
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~-~rIe~iA~~~LgM~~P~ 88 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLEIATLSSP-SRIERIAREKLGMVPPE 88 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCH-HHHHHHHHHcCCCCCCC
Confidence 557889999999999999999999988763 44544455444433443
No 69
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.88 E-value=56 Score=32.76 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
...|.++.+.||+||..|+.|+..+++..+.-=.|+.....
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~ 74 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAP 74 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998888877544
No 70
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=40.41 E-value=79 Score=25.53 Aligned_cols=36 Identities=14% Similarity=0.387 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQ 243 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~ 243 (384)
..+..|..||..|| ..|.+==-.||+.|++|..|=.
T Consensus 6 ~~l~~LL~EN~~LK---ealrQ~N~~Mker~e~l~~wqe 41 (68)
T PF11577_consen 6 QQLQELLQENQDLK---EALRQNNQAMKERFEELLAWQE 41 (68)
T ss_dssp -HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998887 4455555568888888877643
No 71
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=38.92 E-value=12 Score=29.60 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=13.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSEL 228 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~EL 228 (384)
.+..|-+|+|+|+++|.-|.-||
T Consensus 22 tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 22 TLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHhccccceee
Confidence 35556666666666666555544
No 72
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.92 E-value=57 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=29.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
...+.+|..+...|-.||..|.-|-.|+|++..++
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888889999999999999988865
No 73
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.83 E-value=72 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=25.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
...+.+..++.+.|+.||..|..||+.+++..+.+-
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677788888888888888877776643
No 74
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.51 E-value=44 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
+--.+..+|++||..|..|+++++....++-.+.
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~ 99 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQELEQLE 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666777777777666666665554433
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.41 E-value=63 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=36.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
+..++.+|..|+.+||-+++.+..||.+|++.-.++..=|-+.++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999988876666555555443
No 76
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.95 E-value=31 Score=28.66 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMS 226 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ 226 (384)
+...+.+..+||++|+.||..|..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~ 58 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQ 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 77
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.93 E-value=92 Score=29.18 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
.+|..||++|++++..|..++..+.+-.++|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444444444333
No 78
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=37.75 E-value=85 Score=31.02 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPV 249 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~p~ 249 (384)
.++.....-|.|||+.|+.++.+|++.-..+..++..+.++.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 456666677999999999999999999988888887777754
No 79
>PF14645 Chibby: Chibby family
Probab=37.10 E-value=48 Score=29.08 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~ 230 (384)
....|.+||++|+.||.+|.-|..=
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~el 96 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIEL 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777766543
No 80
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.71 E-value=58 Score=25.11 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKk 233 (384)
.+...+...|+.||..|..||...|.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567777788888888888877664
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.66 E-value=47 Score=36.92 Aligned_cols=31 Identities=29% Similarity=0.361 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
....+|..++++|++++.+|.+||.++++-.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777788888888888877655
No 82
>PRK14127 cell division protein GpsB; Provisional
Probab=36.08 E-value=80 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
......|.+||.+|+.+|..|..+|..++....
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355778999999999999999999999999655
No 83
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=35.71 E-value=1.1e+02 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
-..+..||++|+.+...|..|+.++|+.++
T Consensus 13 n~~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 13 NRTLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777999998888888888888888763
No 84
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=34.71 E-value=43 Score=25.42 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016692 213 DNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 213 ENErLRreN~~L~~ELa~mKk 233 (384)
+-|+||||+..|++-+..|-.
T Consensus 12 dreqlrrelnsLR~~vhelct 32 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCT 32 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 568899999988887766543
No 85
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=34.40 E-value=38 Score=25.77 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016692 215 ERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 245 (384)
Q Consensus 215 ErLRreN~~L~~ELa~mKklcN~Ii~FL~n~ 245 (384)
|+||-....|..|+.-+||+-.||+.|=...
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrdLfdFSt~i 44 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRDLFDFSTRI 44 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence 4455555555666666666667777775543
No 86
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.62 E-value=1.3e+02 Score=23.68 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPVTPS 252 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~p~~~~ 252 (384)
...+.++..++++|+.||..|..|...+.. .+.|-..-.+.+.=+.|+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~p~ 77 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKLPD 77 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCCCC
Confidence 356778888889999999999999888776 333444444443333333
No 87
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.03 E-value=44 Score=25.38 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHM 231 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~m 231 (384)
.+.-++.+++|+...|..|++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555543
No 88
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.09 E-value=84 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
....+.+|.++|++|-.....|+..||++++.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999998876
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.86 E-value=1.3e+02 Score=26.58 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=5.0
Q ss_pred hhhHHHHHHHHHH
Q 016692 208 TALSEDNERLRRS 220 (384)
Q Consensus 208 ~~LseENErLRre 220 (384)
..|.+|+++|.++
T Consensus 33 ~~l~~el~~l~~~ 45 (120)
T PF12325_consen 33 ASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 90
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=30.62 E-value=1.9e+02 Score=21.69 Aligned_cols=40 Identities=10% Similarity=-0.068 Sum_probs=34.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHV 246 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v 246 (384)
+...|..++++|..--+.+...|.-|-..| ++|.+|=.++
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~-~~i~~LG~~~ 42 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQA-NSIRKLGKIH 42 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 467899999999999999999999999999 7777775543
No 91
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.49 E-value=72 Score=34.41 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=31.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
...+.++..|.+.|.++|..|..|-.++|+.-.+|=+=+++-|.
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~ 108 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQ 108 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35566777888888888888888888888855555544444443
No 92
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.46 E-value=1.1e+02 Score=23.85 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=26.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
...+..+..||+.|+.+...|..=+..+=.+|+
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999999998888866666664
No 93
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=29.30 E-value=1.1e+02 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
...+..|||+||.++..+.+-+.+...+.
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~ 96 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLE 96 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777765555444444444
No 94
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=29.08 E-value=1.6e+02 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=25.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
...+-+-.+|++||..=...|+.+|.++-.+-.+
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~Lnkk 44 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKK 44 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888887666543
No 95
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.82 E-value=1.6e+02 Score=21.84 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
....|...-+.|+.+|..|..|-..++.....+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888877766554
No 96
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=28.75 E-value=78 Score=26.69 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~ 230 (384)
-+-+|.++.|+||+|+..|.+-|.+
T Consensus 72 lvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 72 VALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999885543
No 97
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.27 E-value=85 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklc 235 (384)
|+..|.+||.++-..|..++....+..
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888877754
No 98
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=28.21 E-value=1.5e+02 Score=26.81 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcC
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY---NDIIYFVQNHVK 247 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc---N~Ii~FL~n~v~ 247 (384)
+.+.-|-.+.|+.||.-|..=|..|+.+| .+-|..|+..++
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455557899999999999999999999 667777776544
No 99
>PF15294 Leu_zip: Leucine zipper
Probab=28.20 E-value=1.1e+02 Score=30.83 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
.+-|..|..||+.||..|..-|....++|..
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~ 157 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATS 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999988888843
No 100
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=27.97 E-value=98 Score=31.21 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
.+..|.|--+-|+-+|..|-+||.+++++.+++++=|..|+.
T Consensus 228 risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 228 RISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666778999999999999999999999998876
No 101
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=27.53 E-value=62 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=12.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSEL 228 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~EL 228 (384)
...+.+|..++.+|..||..|+.++
T Consensus 20 ~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 20 SIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3567788889999999999888775
No 102
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=27.35 E-value=1.5e+02 Score=33.29 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVKPV 249 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~p~ 249 (384)
...+|-++|-++.++|...++++|+..-+|..|++|-=++.
T Consensus 548 ~~eke~~~L~~~lE~Ls~~~~e~qq~Lsel~d~l~ngkk~~ 588 (671)
T PF15390_consen 548 QKEKETSQLSKELERLSRNFTEVQQCLSELTDFLQNGKKSS 588 (671)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45789999999999999999999999999999999976653
No 103
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=26.46 E-value=59 Score=33.45 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcC
Q 016692 211 SEDNERLRRSNNMLMSELAHMRKLYNDI-IYFVQNHVK 247 (384)
Q Consensus 211 seENErLRreN~~L~~ELa~mKklcN~I-i~FL~n~v~ 247 (384)
.+|.|+||+|-+.|...|.+.|+.++|. |.=+.+-+.
T Consensus 1 ~~~~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~ 38 (343)
T KOG0286|consen 1 MEELEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLE 38 (343)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccc
Confidence 3789999999999999999999999887 333334333
No 104
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.29 E-value=76 Score=28.60 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=21.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+..+.+|.+|...|++++..|..||+.+.+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677788888888888888777776654
No 105
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.04 E-value=97 Score=26.69 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 016692 214 NERLRRSNNMLMSEL 228 (384)
Q Consensus 214 NErLRreN~~L~~EL 228 (384)
++.|..++..+..|.
T Consensus 82 ~~~l~~~~~~~~~~~ 96 (118)
T PF13815_consen 82 LEQLEERLQELQQEI 96 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 106
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.98 E-value=1.1e+02 Score=25.43 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=24.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
......+..|..+|+++|..|..++.+|..
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~G 40 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMG 40 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 355678899999999999999988887764
No 107
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=25.73 E-value=1.6e+02 Score=25.83 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=9.1
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLM 225 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~ 225 (384)
...|..+|.+|..||.+|.
T Consensus 74 ~~rlkkk~~~LeEENNlLk 92 (108)
T cd07429 74 VLRLKKKNQQLEEENNLLK 92 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554443
No 108
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.63 E-value=95 Score=30.00 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=12.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLM 225 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~ 225 (384)
.++..|+.|||+|||....++
T Consensus 12 hqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 12 HQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 445566677777666554443
No 109
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.14 E-value=2.1e+02 Score=22.49 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=26.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
...+..|+.|...||-+......|.++.-+..++|.
T Consensus 16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 16 NSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455667777777777777777778888877777774
No 110
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.10 E-value=91 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 213 DNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 213 ENErLRreN~~L~~ELa~mKklcN~I 238 (384)
.--++|+++..+.+|+.++++..+++
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34788999999999999999876653
No 111
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=25.10 E-value=1.4e+02 Score=26.16 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
-..|.||+++||-|- .+..+| .+|++.+|.|+-
T Consensus 37 e~~lkEEi~eLK~El-qRKe~L--l~Kh~~kI~~w~ 69 (106)
T PF11594_consen 37 EQVLKEEINELKEEL-QRKEQL--LQKHYEKIDYWE 69 (106)
T ss_pred HHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHH
Confidence 346888999888444 223333 367777666653
No 112
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=25.07 E-value=87 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAH---------MRKLYNDIIYFVQN 244 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~---------mKklcN~Ii~FL~n 244 (384)
..=..|..||+.||.|.+.|..|..+ ++-.|+.|..-|-.
T Consensus 39 ~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 39 MENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44467999999999998888666554 33345555555544
No 113
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.94 E-value=2e+02 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=30.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
..++..|.++|++|+.+...|..--.+=.++++.+-.+....++
T Consensus 46 erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 46 ERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888999999888888877665555555555555555444
No 114
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=24.77 E-value=80 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+.+++..||+.|+.+|..|..|...++.=
T Consensus 56 ~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 56 QRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556788888888888888888888877765
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.48 E-value=1.4e+02 Score=29.80 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
..+.++.+||+.|+++|..|..|+...+...
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777766665554433
No 116
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.46 E-value=1.5e+02 Score=27.25 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAH-MRKLYNDI 238 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~-mKklcN~I 238 (384)
..+..|..|+++|++|...|.++|.. +.++-.++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~ 107 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 117
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.74 E-value=1.5e+02 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
.+..|.+||+...+|-.....|-..+.+.++++|..
T Consensus 105 ~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 105 RIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554443
No 118
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.47 E-value=53 Score=28.80 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLM 225 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~ 225 (384)
+....|||-+||.||+.|-
T Consensus 79 VdsVKEEnLKLrSENQVLG 97 (120)
T KOG3650|consen 79 VDSVKEENLKLRSENQVLG 97 (120)
T ss_pred HHHHHHhhhhhhhhhHHHH
Confidence 3444555666666665543
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.34 E-value=1.8e+02 Score=24.87 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
...+|..+.+.++++|..|..|-.+++...+.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888777665
No 120
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.15 E-value=1.8e+02 Score=24.10 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
.+++-|.-|.|.|+.+|..|.+|...++..-+.+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 3456678899999999999998888666554433
No 121
>PF00981 Rota_NS53: Rotavirus RNA-binding Protein 53 (NS53); InterPro: IPR002148 The proteins in this entry are variously described as either non-structural protein 1 (NSP1) or non-structural RNA-binding protein 53(NS53). They are RNA binding proteins that contain a characteristic cysteine rich region [, ]. They are made at low levels in infected cells and are a component of early replication and are known to accumulate on the cytoskeleton of the infected cell.; GO: 0003723 RNA binding
Probab=23.02 E-value=64 Score=34.62 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 016692 230 HMRKLYNDIIYFVQNHVKP 248 (384)
Q Consensus 230 ~mKklcN~Ii~FL~n~v~p 248 (384)
+||++||+|+.|++..||.
T Consensus 337 Ri~~iYn~im~Firal~KS 355 (488)
T PF00981_consen 337 RIKKIYNNIMSFIRALVKS 355 (488)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999993
No 122
>PHA03155 hypothetical protein; Provisional
Probab=22.86 E-value=1e+02 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
..+.+|..|..||+-||..|.+.|.+
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45789999999999999999988754
No 123
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.61 E-value=1.3e+02 Score=29.98 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
+.+=..+.++|.+||..|..||+.++.+-+++-.+-....+
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~ 101 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQLLEEVESLEEENKR 101 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677888999999999999999999999888776443
No 124
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.52 E-value=2.4e+02 Score=25.56 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=32.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
.+-.|.-||..|......=..||.+||+.|...+.-|..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h 81 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTH 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888889999999999888776654
No 125
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=22.30 E-value=1.2e+02 Score=25.37 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
......|....+.|..+|..|..++...|+
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356678889999999999999999988774
No 126
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.10 E-value=2e+02 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
....|.+||..||.+...+..|=++++..
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888887777766666555543
No 127
>KOG4119 consensus G protein gamma subunit [Signal transduction mechanisms]
Probab=21.95 E-value=1.8e+02 Score=23.78 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcC
Q 016692 213 DNERLRRSNNMLMSELAHMR----KLYNDIIYFVQNHVK 247 (384)
Q Consensus 213 ENErLRreN~~L~~ELa~mK----klcN~Ii~FL~n~v~ 247 (384)
++.++|+++.+|+.|+.--| +.+.+|+.|+-.|..
T Consensus 8 ~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~ 46 (71)
T KOG4119|consen 8 KKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHAT 46 (71)
T ss_pred chHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCc
Confidence 35566666666666665444 556788888877763
No 128
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.76 E-value=1.4e+02 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+..|.++++.+..++..|..++.+.+.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 129
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=21.73 E-value=91 Score=32.79 Aligned_cols=75 Identities=16% Similarity=0.357 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCCCCC----ceEEcCCCCeEEEeCCchhhhhhcc----------------CCCCCCCccchhhcccccc
Q 016692 25 FLTKTYQLVDDPTTDH----VVSWGEDDTTFVVWRPPEFARDLLP----------------NYFKHNNFSSFVRQLNTYG 84 (384)
Q Consensus 25 Fl~KLy~mLdDp~~~~----IIsWs~dG~sFVI~d~~~F~~~VLP----------------kyFkhsnfsSFvRQLN~YG 84 (384)
|..|-|.+|..-..+. -|.|+|||+.+.|||.- ++-+|+- +|..-..|..-+|-||..-
T Consensus 163 ~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~-Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV-LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch-hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceee
Confidence 5567788886544432 38999999999999753 2333331 2333355666777777665
Q ss_pred eeeeeCCceeEecCCcCCCC
Q 016692 85 FRKIVPDRWEFANEFFKKGE 104 (384)
Q Consensus 85 FrKv~~d~~eF~He~FrRG~ 104 (384)
.+-. .||-|.+=.++-
T Consensus 242 Wk~f----~eflhl~s~~dp 257 (447)
T KOG4497|consen 242 WKPF----GEFLHLCSYHDP 257 (447)
T ss_pred eeeh----hhhccchhccCc
Confidence 5443 356666555553
No 130
>PF15058 Speriolin_N: Speriolin N terminus
Probab=21.66 E-value=1.3e+02 Score=29.09 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
...|.+.+|||=|||+.|..-+.-+|.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 467889999999999888766555443
No 131
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=21.46 E-value=35 Score=37.71 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhh
Q 016692 20 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFAR 61 (384)
Q Consensus 20 ~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~ 61 (384)
+.--.-+.||--|.+.+++..-+-|++.|+.|+|. .|.+
T Consensus 551 GRLfRll~Kln~I~dR~e~~~D~~WSesG~~fmi~---LFRD 589 (655)
T KOG3741|consen 551 GRLFRLLLKLNFIDDRPEYVDDPDWSESGDRFMIK---LFRD 589 (655)
T ss_pred chHHHHHHHHhhhccCcccccCCcchhccceehHH---HHHH
Confidence 33356788999999999998889999999999883 5553
No 132
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=21.36 E-value=1.6e+02 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 216 RLRRSNNMLMSELAHMRKLYNDIIYFVQ 243 (384)
Q Consensus 216 rLRreN~~L~~ELa~mKklcN~Ii~FL~ 243 (384)
++++-...+..++.+|.++.++|+.|-.
T Consensus 37 ~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 37 QLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577788899999999999999999864
No 133
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=21.15 E-value=81 Score=30.23 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..+..|.+||++|.+|+..|..|+...+..+.
T Consensus 119 ~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 119 RQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 44555555666666666555555555444443
No 134
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.05 E-value=73 Score=34.49 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
++.++.|+|+||.+.|..|+..|++.++++-
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 4555888888888888888888888776653
No 135
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=20.63 E-value=83 Score=25.55 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMS 226 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ 226 (384)
-+-+|.|+.++||+++..|.+
T Consensus 64 lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 64 LILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 367999999999999998863
No 136
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.20 E-value=1.1e+02 Score=31.41 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=0.0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 201 INLNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 201 ~~~~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
..+...+..|.+||++||.|-..|..|-......--.+|
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv 201 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLV 201 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHH
No 137
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=20.19 E-value=2.6e+02 Score=21.38 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
....+..|.++|++++..|..|...+++..+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888888888887777766
No 138
>PF15463 ECM11: Extracellular mutant protein 11
Probab=20.06 E-value=1.2e+02 Score=26.95 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
.+.+..+.|+.+-..|-..|.+||...++||
T Consensus 109 eI~~R~eav~~~~~~l~~kL~~mk~~G~eiL 139 (139)
T PF15463_consen 109 EINRRAEAVRAQGEQLDRKLEKMKEGGKEIL 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4455566677777777777777777777664
Done!