Query 016692
Match_columns 384
No_of_seqs 242 out of 955
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 100.0 4.4E-38 1.5E-42 263.8 5.7 92 23-114 5-106 (106)
2 2ldu_A Heat shock factor prote 100.0 7.4E-38 2.5E-42 270.1 6.7 101 18-118 13-124 (125)
3 3hts_B Heat shock transcriptio 100.0 1.8E-31 6.2E-36 223.7 2.9 81 18-99 9-100 (102)
4 1hjb_A Ccaat/enhancer binding 91.6 0.15 5.2E-06 41.5 3.9 33 205-237 43-75 (87)
5 1awc_A Protein (GA binding pro 90.8 0.1 3.4E-06 44.3 2.2 57 27-83 5-62 (110)
6 1fli_A FLI-1; transcription/DN 90.6 0.14 4.7E-06 42.7 2.8 61 23-83 6-67 (98)
7 2wt7_A Proto-oncogene protein 90.2 0.69 2.4E-05 34.9 6.1 40 206-245 24-63 (63)
8 4avp_A ETS translocation varia 90.1 0.16 5.5E-06 42.8 2.8 77 20-96 9-90 (106)
9 1gu4_A CAAT/enhancer binding p 90.0 0.16 5.4E-06 40.6 2.5 31 205-235 43-73 (78)
10 2ypr_A Protein FEV; transcript 89.9 0.17 5.8E-06 42.3 2.8 61 23-83 8-69 (102)
11 3w03_C DNA repair protein XRCC 89.6 0.29 1E-05 44.8 4.3 32 205-236 152-183 (184)
12 1bc8_C SAP-1, protein (SAP-1 E 89.2 0.19 6.3E-06 41.5 2.5 74 24-97 6-84 (93)
13 1wwx_A E74-like factor 5 ESE-2 89.1 0.25 8.5E-06 41.7 3.2 67 17-83 3-72 (107)
14 1t2k_D Cyclic-AMP-dependent tr 88.9 0.47 1.6E-05 35.5 4.3 30 205-234 29-58 (61)
15 1gvj_A C-ETS-1 protein, P54; t 87.8 0.25 8.6E-06 43.8 2.5 77 21-97 38-119 (146)
16 2dao_A Transcription factor ET 86.3 0.34 1.2E-05 41.6 2.4 61 23-83 9-71 (118)
17 2nny_A C-ETS-1 protein, P54; p 86.2 0.32 1.1E-05 44.1 2.3 64 22-85 64-128 (171)
18 2wt7_A Proto-oncogene protein 84.5 1.3 4.4E-05 33.4 4.6 34 203-236 28-61 (63)
19 1yo5_C SAM pointed domain cont 84.0 0.39 1.3E-05 39.9 1.7 67 19-85 7-76 (97)
20 1ci6_A Transcription factor AT 83.1 1.2 4.3E-05 33.6 4.0 31 208-238 26-56 (63)
21 1deb_A APC protein, adenomatou 83.1 2.2 7.6E-05 31.7 5.2 24 207-230 5-28 (54)
22 4dzn_A Coiled-coil peptide CC- 82.9 2.3 7.9E-05 28.4 4.7 30 206-235 3-32 (33)
23 2j5u_A MREC protein; bacterial 82.8 0.52 1.8E-05 44.3 2.3 35 206-240 20-54 (255)
24 1jnm_A Proto-oncogene C-JUN; B 82.7 0.57 1.9E-05 35.2 2.0 35 208-242 25-59 (62)
25 1hbx_G ETS-domain protein ELK- 82.5 0.43 1.5E-05 42.7 1.4 76 24-99 7-87 (157)
26 3jtg_A ETS-related transcripti 81.6 0.59 2E-05 39.1 1.9 59 25-83 7-68 (103)
27 2yy0_A C-MYC-binding protein; 81.3 1.9 6.3E-05 31.9 4.3 32 205-236 19-50 (53)
28 1hjb_A Ccaat/enhancer binding 80.0 3.2 0.00011 33.7 5.6 40 206-245 37-76 (87)
29 1dh3_A Transcription factor CR 79.8 1.1 3.6E-05 33.3 2.5 32 205-236 22-53 (55)
30 1jnm_A Proto-oncogene C-JUN; B 79.3 1.7 5.7E-05 32.6 3.6 33 203-235 27-59 (62)
31 2wt7_B Transcription factor MA 77.5 2 6.8E-05 35.2 3.8 34 205-238 55-88 (90)
32 1pue_E Protein (transcription 76.6 0.99 3.4E-05 36.8 1.7 59 26-84 5-68 (89)
33 2lf8_A Transcription factor ET 78.2 0.52 1.8E-05 41.0 0.0 57 27-83 9-67 (128)
34 2dgc_A Protein (GCN4); basic d 76.4 2.5 8.6E-05 32.1 3.8 32 205-236 30-61 (63)
35 3q4f_C DNA repair protein XRCC 76.2 2 6.7E-05 39.4 3.7 25 205-229 161-185 (186)
36 2yy0_A C-MYC-binding protein; 75.6 4 0.00014 30.2 4.6 31 210-240 17-47 (53)
37 3m48_A General control protein 75.4 4.1 0.00014 27.8 4.2 28 208-235 3-30 (33)
38 1t2k_D Cyclic-AMP-dependent tr 75.2 6.8 0.00023 29.1 5.9 37 206-242 23-59 (61)
39 1gu4_A CAAT/enhancer binding p 74.9 2.4 8.3E-05 33.7 3.5 39 206-244 37-75 (78)
40 3s9g_A Protein hexim1; cyclin 72.8 3.7 0.00013 34.4 4.2 29 205-233 65-93 (104)
41 1ci6_A Transcription factor AT 72.8 9.1 0.00031 28.8 6.1 34 204-237 29-62 (63)
42 2jee_A YIIU; FTSZ, septum, coi 69.4 9.9 0.00034 30.6 5.9 25 217-241 53-77 (81)
43 1uo4_A General control protein 69.2 7.2 0.00025 26.7 4.3 29 207-235 3-31 (34)
44 1t6f_A Geminin; coiled-coil, c 68.2 12 0.0004 26.0 5.2 32 208-239 3-34 (37)
45 1dh3_A Transcription factor CR 67.9 1.4 4.9E-05 32.6 0.7 27 203-229 27-53 (55)
46 3he5_A Synzip1; heterodimeric 67.1 7 0.00024 28.1 4.1 31 204-234 9-46 (49)
47 2dgc_A Protein (GCN4); basic d 66.7 2.9 9.9E-05 31.7 2.2 28 203-230 35-62 (63)
48 1a93_B MAX protein, coiled coi 66.0 4.9 0.00017 27.6 3.0 26 205-230 7-32 (34)
49 1nlw_A MAD protein, MAX dimeri 64.4 4 0.00014 32.2 2.7 29 207-235 49-77 (80)
50 1kd8_B GABH BLL, GCN4 acid bas 63.4 15 0.00051 25.4 5.0 31 207-237 3-33 (36)
51 1gd2_E Transcription factor PA 62.7 3.3 0.00011 32.3 1.8 26 207-232 38-63 (70)
52 3c3g_A Alpha/beta peptide with 61.9 13 0.00046 25.2 4.4 29 208-236 3-31 (33)
53 1kd8_A GABH AIV, GCN4 acid bas 61.5 15 0.00051 25.4 4.7 31 207-237 3-33 (36)
54 3c3f_A Alpha/beta peptide with 59.3 15 0.00053 25.1 4.4 30 207-236 3-32 (34)
55 3a5t_A Transcription factor MA 59.3 0.083 2.8E-06 44.6 -8.4 39 206-244 66-104 (107)
56 2bni_A General control protein 58.0 16 0.00053 25.1 4.3 30 207-236 3-32 (34)
57 1nkp_A C-MYC, MYC proto-oncoge 57.2 7.2 0.00025 31.2 3.0 23 210-232 64-86 (88)
58 1uii_A Geminin; human, DNA rep 57.1 25 0.00084 28.4 6.1 37 205-241 39-75 (83)
59 1fmh_A General control protein 56.5 17 0.00059 24.2 4.2 29 207-235 3-31 (33)
60 2wq1_A General control protein 56.3 21 0.00073 24.3 4.7 29 208-236 3-31 (33)
61 2wuj_A Septum site-determining 56.0 8.6 0.0003 28.4 3.1 30 204-233 26-55 (57)
62 1go4_E MAD1 (mitotic arrest de 55.8 10 0.00036 31.5 3.8 30 205-234 12-41 (100)
63 1dip_A Delta-sleep-inducing pe 55.4 7.6 0.00026 31.0 2.8 24 203-226 20-43 (78)
64 1nkp_B MAX protein, MYC proto- 52.9 5.9 0.0002 30.9 1.8 27 207-233 49-75 (83)
65 2hy6_A General control protein 52.7 25 0.00085 24.1 4.6 30 207-236 3-32 (34)
66 1got_G GT-gamma; complex (GTP- 52.6 13 0.00044 29.1 3.7 35 213-247 18-56 (73)
67 1ik9_A DNA repair protein XRCC 50.5 22 0.00075 32.8 5.5 33 207-239 134-166 (213)
68 3m91_A Proteasome-associated A 49.0 28 0.00096 25.6 4.8 27 207-233 11-37 (51)
69 3ra3_B P2F; coiled coil domain 49.0 22 0.00075 22.9 3.6 22 209-230 4-25 (28)
70 3ra3_B P2F; coiled coil domain 48.9 11 0.00039 24.2 2.3 19 214-232 2-20 (28)
71 2r2v_A GCN4 leucine zipper; co 48.9 30 0.001 23.7 4.5 29 207-235 3-31 (34)
72 1go4_E MAD1 (mitotic arrest de 48.7 18 0.00063 30.0 4.2 27 204-230 18-44 (100)
73 1wlq_A Geminin; coiled-coil; 2 48.1 24 0.00082 28.5 4.7 34 205-238 31-64 (83)
74 1gd2_E Transcription factor PA 47.2 13 0.00046 28.8 3.0 22 209-230 47-68 (70)
75 2jn6_A Protein CGL2762, transp 46.9 1.1 3.8E-05 34.9 -3.3 28 207-234 61-88 (97)
76 2xdj_A Uncharacterized protein 46.1 38 0.0013 27.0 5.6 44 204-247 26-69 (83)
77 2wt7_B Transcription factor MA 43.5 38 0.0013 27.6 5.2 36 205-240 48-83 (90)
78 2oxj_A Hybrid alpha/beta pepti 43.0 46 0.0016 22.7 4.7 29 207-235 3-31 (34)
79 3mq7_A Bone marrow stromal ant 41.3 12 0.00041 32.1 2.0 29 207-235 73-101 (121)
80 3vem_A Helicase protein MOM1; 40.6 41 0.0014 28.6 5.2 32 209-240 36-82 (115)
81 2zvf_A Alanyl-tRNA synthetase; 40.2 31 0.0011 29.4 4.6 29 204-232 31-59 (171)
82 2oqq_A Transcription factor HY 40.0 24 0.00084 25.2 3.1 24 205-228 17-40 (42)
83 2jee_A YIIU; FTSZ, septum, coi 39.9 59 0.002 26.1 5.7 27 207-233 22-48 (81)
84 2zxx_A Geminin; coiled-coil, c 39.6 55 0.0019 26.1 5.5 30 205-234 27-56 (79)
85 1uii_A Geminin; human, DNA rep 39.1 56 0.0019 26.4 5.5 33 208-240 49-81 (83)
86 3oja_A Leucine-rich immune mol 38.8 44 0.0015 32.9 6.0 38 209-246 439-476 (487)
87 1nlw_A MAD protein, MAX dimeri 38.5 35 0.0012 26.7 4.2 27 204-230 53-79 (80)
88 4h22_A Leucine-rich repeat fli 38.4 38 0.0013 28.3 4.6 45 203-247 35-82 (103)
89 3i00_A HIP-I, huntingtin-inter 38.1 50 0.0017 28.0 5.4 24 204-227 14-37 (120)
90 1a93_A Coiled coil, LZ, MYC pr 37.5 28 0.00094 23.8 3.0 27 205-231 7-33 (34)
91 3ra3_A P1C; coiled coil domain 36.8 39 0.0013 21.8 3.4 25 208-232 3-27 (28)
92 2wuj_A Septum site-determining 36.8 16 0.00056 26.9 1.9 24 205-228 34-57 (57)
93 1nkp_B MAX protein, MYC proto- 36.4 35 0.0012 26.4 3.9 34 209-242 44-77 (83)
94 3s9g_A Protein hexim1; cyclin 34.4 19 0.00066 30.1 2.2 32 205-236 44-82 (104)
95 3kin_B Kinesin heavy chain; mo 34.3 27 0.00092 29.2 3.1 26 207-232 91-116 (117)
96 2w6a_A ARF GTPase-activating p 33.6 79 0.0027 24.2 5.2 35 205-239 20-54 (63)
97 3cue_D Transport protein parti 32.8 28 0.00095 31.6 3.2 61 24-85 88-157 (193)
98 3oja_A Leucine-rich immune mol 32.1 71 0.0024 31.4 6.3 37 205-241 442-478 (487)
99 2wvr_A Geminin; DNA replicatio 30.8 87 0.003 29.1 6.1 30 205-234 108-137 (209)
100 1am9_A Srebp-1A, protein (ster 30.6 47 0.0016 25.9 3.8 28 206-233 51-78 (82)
101 2w6b_A RHO guanine nucleotide 30.0 1.3E+02 0.0043 22.7 5.7 37 204-240 9-48 (56)
102 3m48_A General control protein 29.6 42 0.0014 22.8 2.8 25 203-227 5-29 (33)
103 1use_A VAsp, vasodilator-stimu 29.2 1.1E+02 0.0037 22.1 5.0 32 212-246 7-39 (45)
104 1wt6_A Myotonin-protein kinase 28.8 1.3E+02 0.0046 24.1 6.1 38 208-245 27-64 (81)
105 2oxj_A Hybrid alpha/beta pepti 28.7 44 0.0015 22.9 2.8 25 204-228 7-31 (34)
106 4dzn_A Coiled-coil peptide CC- 27.7 65 0.0022 21.4 3.4 20 213-232 3-22 (33)
107 3w03_C DNA repair protein XRCC 26.6 94 0.0032 28.2 5.5 38 205-242 145-182 (184)
108 2j5u_A MREC protein; bacterial 26.5 49 0.0017 30.8 3.8 30 207-236 28-60 (255)
109 3m9b_A Proteasome-associated A 26.0 45 0.0016 31.8 3.4 32 207-238 56-87 (251)
110 4etp_B Spindle POLE BODY-assoc 25.4 1E+02 0.0034 30.6 5.8 39 206-244 4-42 (333)
111 1t3j_A Mitofusin 1; coiled coi 24.3 1.7E+02 0.0056 24.1 6.1 37 205-241 47-83 (96)
112 4g2k_A General control protein 24.2 1.5E+02 0.0051 25.5 5.9 39 207-245 16-54 (125)
113 1sz7_A BET3 homolog, trafficki 24.2 50 0.0017 30.2 3.3 62 24-86 85-154 (200)
114 2wvr_A Geminin; DNA replicatio 23.8 1.3E+02 0.0043 28.0 5.8 32 209-240 119-150 (209)
115 2wpq_A Trimeric autotransporte 23.6 77 0.0026 26.3 3.9 32 203-234 67-98 (99)
116 4etp_A Kinesin-like protein KA 23.3 1.1E+02 0.0039 30.3 5.9 23 207-229 12-34 (403)
117 2wg5_A General control protein 22.7 79 0.0027 25.9 3.9 27 207-233 9-35 (109)
118 1ykh_B RNA polymerase II holoe 22.2 89 0.003 26.6 4.3 37 205-241 92-128 (132)
119 1got_B GT-beta; complex (GTP-b 22.2 43 0.0015 30.1 2.4 26 212-237 2-27 (340)
120 1p9i_A Cortexillin I/GCN4 hybr 21.8 91 0.0031 20.5 3.2 24 204-227 5-28 (31)
121 2oto_A M protein; helical coil 21.4 1.2E+02 0.004 26.0 5.0 22 209-230 26-47 (155)
122 3m91_A Proteasome-associated A 21.3 1.9E+02 0.0064 21.1 5.2 35 204-238 15-49 (51)
123 1deq_A Fibrinogen (alpha chain 21.3 1.4E+02 0.0049 30.1 6.1 40 204-243 52-91 (390)
124 4emc_A Monopolin complex subun 21.3 1.2E+02 0.0042 27.8 5.2 30 205-234 20-49 (190)
125 1whv_A Poly(A)-specific ribonu 21.2 12 0.00042 31.1 -1.3 52 29-81 32-88 (100)
126 3r4h_A Coiled coil helix CC-TE 20.7 1.2E+02 0.004 20.3 3.6 27 207-233 4-30 (34)
127 1l8d_A DNA double-strand break 20.5 1.2E+02 0.004 24.1 4.5 36 205-240 71-106 (112)
128 3brv_B NF-kappa-B essential mo 20.2 1.9E+02 0.0064 22.7 5.3 34 205-241 8-41 (70)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=100.00 E-value=4.4e-38 Score=263.75 Aligned_cols=92 Identities=46% Similarity=0.871 Sum_probs=88.4
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee----------CCc
Q 016692 23 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV----------PDR 92 (384)
Q Consensus 23 ~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~----------~d~ 92 (384)
.+|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+. ++.
T Consensus 5 p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~ 84 (106)
T 1hks_A 5 PAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDE 84 (106)
T ss_dssp CTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTST
T ss_pred CcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCc
Confidence 3699999999999999999999999999999999999999999999999999999999999999985 367
Q ss_pred eeEecCCcCCCChhhhcccccc
Q 016692 93 WEFANEFFKKGEKHLLCEIHRR 114 (384)
Q Consensus 93 ~eF~He~FrRG~p~LL~~IkRR 114 (384)
|+|+|++|+||+++||..|+||
T Consensus 85 ~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 85 IEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp TEECCTTCCSSCTTSTTTCCCC
T ss_pred eEEECcCccCcCHHHHhhCcCC
Confidence 9999999999999999999986
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=7.4e-38 Score=270.12 Aligned_cols=101 Identities=47% Similarity=0.823 Sum_probs=94.0
Q ss_pred CCCCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee--------
Q 016692 18 HKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV-------- 89 (384)
Q Consensus 18 ~k~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~-------- 89 (384)
......+|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+.
T Consensus 13 ~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~ 92 (125)
T 2ldu_A 13 GPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLV 92 (125)
T ss_dssp SSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSS
T ss_pred cCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccc
Confidence 344556799999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ---CCceeEecCCcCCCChhhhccccccCCCC
Q 016692 90 ---PDRWEFANEFFKKGEKHLLCEIHRRKTAQ 118 (384)
Q Consensus 90 ---~d~~eF~He~FrRG~p~LL~~IkRRK~~~ 118 (384)
++.|+|+|++|+||+++||..|+||++..
T Consensus 93 ~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~ 124 (125)
T 2ldu_A 93 KPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124 (125)
T ss_dssp SCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred cCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence 36899999999999999999999998753
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.96 E-value=1.8e-31 Score=223.74 Aligned_cols=81 Identities=41% Similarity=0.850 Sum_probs=75.7
Q ss_pred CCCCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccCCCCCCCccchhhcccccceeeee--------
Q 016692 18 HKSVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIV-------- 89 (384)
Q Consensus 18 ~k~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPkyFkhsnfsSFvRQLN~YGFrKv~-------- 89 (384)
.+.+| +|+.|||+||+|+++++||+|+++|++|||+|+++|+++|||+||+|+||+||+||||+|||+|+.
T Consensus 9 ~~~~p-~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~ 87 (102)
T 3hts_B 9 SMARP-AFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSML 87 (102)
T ss_dssp -CCSC-HHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC--------
T ss_pred CCCCC-cHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCccc
Confidence 34444 699999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCceeEecCC
Q 016692 90 ---PDRWEFANEF 99 (384)
Q Consensus 90 ---~d~~eF~He~ 99 (384)
+++|||.|++
T Consensus 88 ~~~~~~wEF~n~~ 100 (102)
T 3hts_B 88 SNNDSRWEFENER 100 (102)
T ss_dssp -CCSCCEEEEECC
T ss_pred CCCcCCeEecCCC
Confidence 6789999986
No 4
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.60 E-value=0.15 Score=41.48 Aligned_cols=33 Identities=33% Similarity=0.587 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
..+..|..||++|+.+...|..|+..++.+.-.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777766544
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=90.84 E-value=0.1 Score=44.34 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=42.2
Q ss_pred HHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccC-CCCCCCccchhhccccc
Q 016692 27 TKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPN-YFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 27 ~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPk-yFkhsnfsSFvRQLN~Y 83 (384)
.=|.++|+|++..++|+|..++.-|.+.|+++.++.-=.+ -=..-||...-|-|..|
T Consensus 5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyY 62 (110)
T 1awc_A 5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYY 62 (110)
T ss_dssp HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGG
T ss_pred HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999998877643221 11234677777777766
No 6
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=90.63 E-value=0.14 Score=42.68 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=44.0
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 23 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 23 ~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
.....=|.++|+|++..++|+|..++.-|.+.|+++.++.-=. +-=..-+|...-|-|..|
T Consensus 6 ~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyY 67 (98)
T 1fli_A 6 IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY 67 (98)
T ss_dssp CCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred eeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 3456667788999999999999999899999999887763221 111244666777777665
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.16 E-value=0.69 Score=34.92 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 245 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~ 245 (384)
....|.++-+.|..+|..|..|+..++..+..|-.+|..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567888888888888888888888888888887777665
No 8
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=90.13 E-value=0.16 Score=42.76 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=53.8
Q ss_pred CCCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc---ce-eeeeCCcee
Q 016692 20 SVPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY---GF-RKIVPDRWE 94 (384)
Q Consensus 20 ~vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y---GF-rKv~~d~~e 94 (384)
.+.-....=|.++|+|++..++|+|.+.+..|.+.|+++.++--=. +-=..-+|..+.|-|..| |. +||...+..
T Consensus 9 ~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~v 88 (106)
T 4avp_A 9 RGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYV 88 (106)
T ss_dssp --CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSE
T ss_pred CCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEE
Confidence 3344567778899999999999999999989999999888764222 111356888898888877 33 344444555
Q ss_pred Ee
Q 016692 95 FA 96 (384)
Q Consensus 95 F~ 96 (384)
|.
T Consensus 89 Yk 90 (106)
T 4avp_A 89 YK 90 (106)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.95 E-value=0.16 Score=40.56 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
..+..|..||++|+.+...|..|+..+|.+.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888877654
No 10
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=89.92 E-value=0.17 Score=42.33 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=46.3
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 23 APFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 23 ~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
.....=|.++|+|++..++|+|...+..|.+.|+++.++.-=. +-=..-+|..+.|-|..|
T Consensus 8 i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY 69 (102)
T 2ypr_A 8 IQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYY 69 (102)
T ss_dssp CCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHH
T ss_pred EeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 3466667889999999999999988899999999888764211 111356788888888776
No 11
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=89.59 E-value=0.29 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
...++|+++|++|.+||.+|.+|..++.+..+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999998887654
No 12
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=89.22 E-value=0.19 Score=41.52 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=52.1
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhcccccc---e-eeeeCCceeEec
Q 016692 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTYG---F-RKIVPDRWEFAN 97 (384)
Q Consensus 24 ~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~H 97 (384)
....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=..-+|...-|-|..|- + +|+...+..|..
T Consensus 6 ~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F 84 (93)
T 1bc8_C 6 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 84 (93)
T ss_dssp CHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEE
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEe
Confidence 456668899999999999999988889999999887764322 1113457888888888774 2 233334555543
No 13
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=89.13 E-value=0.25 Score=41.72 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCCCCCchHHHHHHHhhcCCC-CCCceEEcCC-CCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 17 SHKSVPAPFLTKTYQLVDDPT-TDHVVSWGED-DTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 17 s~k~vP~~Fl~KLy~mLdDp~-~~~IIsWs~d-G~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
+..+.+.....=|.+||.|++ ..++|+|... ..-|.+.|+++.++.-=. +-=..-+|...-|-|..|
T Consensus 3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyY 72 (107)
T 1wwx_A 3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYY 72 (107)
T ss_dssp CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 445566678888999999886 5689999874 579999999887764211 111245677777777766
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.90 E-value=0.47 Score=35.46 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+..|..||..|+.+...|..|+.+++.+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777777777777777766654
No 15
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=87.84 E-value=0.25 Score=43.79 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccccee----eeeCCceeE
Q 016692 21 VPAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTYGFR----KIVPDRWEF 95 (384)
Q Consensus 21 vP~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~YGFr----Kv~~d~~eF 95 (384)
.+.....=|.+||+|++..++|+|..++.-|.+.|+++.++..=. +-=..-+|...-|-|..|-=+ |+...+..|
T Consensus 38 g~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY 117 (146)
T 1gvj_A 38 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVY 117 (146)
T ss_dssp CSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEE
T ss_pred CceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEE
Confidence 345577778899999999999999999999999999888874322 111245688888888877433 343345555
Q ss_pred ec
Q 016692 96 AN 97 (384)
Q Consensus 96 ~H 97 (384)
..
T Consensus 118 ~F 119 (146)
T 1gvj_A 118 RF 119 (146)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 16
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.34 E-value=0.34 Score=41.58 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=45.0
Q ss_pred chHHHHHHHhhcCCCCCCceEEcCC-CCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 23 APFLTKTYQLVDDPTTDHVVSWGED-DTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 23 ~~Fl~KLy~mLdDp~~~~IIsWs~d-G~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
.....=|.+||+|+++.++|+|... +.-|.+.|+++.++.-=. +-=..-+|...-|-|..|
T Consensus 9 ~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyY 71 (118)
T 2dao_A 9 RLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 71 (118)
T ss_dssp CCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 3466778899999999999999874 569999999887764322 211245777888888777
No 17
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=86.20 E-value=0.32 Score=44.12 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=47.8
Q ss_pred CchHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhcccccce
Q 016692 22 PAPFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTYGF 85 (384)
Q Consensus 22 P~~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~YGF 85 (384)
+.....=|.+||+|++..++|+|...+.-|.+.|+++.++..=. +-=..-+|...-|-|..|-=
T Consensus 64 ~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~ 128 (171)
T 2nny_A 64 PIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYD 128 (171)
T ss_dssp SCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGT
T ss_pred ceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Confidence 44566678889999999999999999999999999888874322 11124467788888877743
No 18
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.48 E-value=1.3 Score=33.42 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=30.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
+...+..|..||+.|+.+...|..|+.+++.+..
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998764
No 19
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=84.00 E-value=0.39 Score=39.86 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=47.3
Q ss_pred CCCCchHHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhhcc-CCCCCCCccchhhcccccce
Q 016692 19 KSVPAPFLTKTYQLVDDPT-TDHVVSWGE-DDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTYGF 85 (384)
Q Consensus 19 k~vP~~Fl~KLy~mLdDp~-~~~IIsWs~-dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~YGF 85 (384)
.+.+.....=|.+||+|++ ..++|+|.+ ++.-|.+.|+++.++.-=. +-=..-+|...-|-|..|--
T Consensus 7 ~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~ 76 (97)
T 1yo5_C 7 GSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYK 76 (97)
T ss_dssp --CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTT
T ss_pred CCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 3445567788899999986 479999974 5779999999887764222 11124578888888888753
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.07 E-value=1.2 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
.+|.++.+.|..+|..|..++..+++-+.-|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444333
No 21
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=83.06 E-value=2.2 Score=31.73 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~ 230 (384)
...|...-|.||+||..|++||.-
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 456888889999999999999863
No 22
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.92 E-value=2.3 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
.+++|.+|...|++|...|.-|++.+|+-|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 367899999999999999999999998755
No 23
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=82.81 E-value=0.52 Score=44.34 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
....|.+||++||+||..|..++.+++.+-.+.-.
T Consensus 20 ~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~r 54 (255)
T 2j5u_A 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENKD 54 (255)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999888754433
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.71 E-value=0.57 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
.+|.++-+.|..+|..|..|+..++.-+..|-.+|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 25
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=82.47 E-value=0.43 Score=42.73 Aligned_cols=76 Identities=20% Similarity=0.335 Sum_probs=53.6
Q ss_pred hHHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhcc-CCCCCCCccchhhcccccc---e-eeeeCCceeEecC
Q 016692 24 PFLTKTYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTYG---F-RKIVPDRWEFANE 98 (384)
Q Consensus 24 ~Fl~KLy~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~YG---F-rKv~~d~~eF~He 98 (384)
....=|.+||+|++..++|+|...+.-|.+.|+++.++..=. +-=..-+|...-|-|..|- + +|+...+..|..-
T Consensus 7 ~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF~ 86 (157)
T 1hbx_G 7 TLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFV 86 (157)
T ss_dssp CHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEES
T ss_pred cHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEeeC
Confidence 456667889999999999999988889999999888765322 1113457888888888874 2 2343445556543
Q ss_pred C
Q 016692 99 F 99 (384)
Q Consensus 99 ~ 99 (384)
+
T Consensus 87 ~ 87 (157)
T 1hbx_G 87 S 87 (157)
T ss_dssp S
T ss_pred C
Confidence 3
No 26
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=81.56 E-value=0.59 Score=39.09 Aligned_cols=59 Identities=12% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCC-CCCceEEcCC-CCeEEEeCCchhhhhhcc-CCCCCCCccchhhccccc
Q 016692 25 FLTKTYQLVDDPT-TDHVVSWGED-DTTFVVWRPPEFARDLLP-NYFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 25 Fl~KLy~mLdDp~-~~~IIsWs~d-G~sFVI~d~~~F~~~VLP-kyFkhsnfsSFvRQLN~Y 83 (384)
...=|.++|.|++ ..++|+|.+. ...|.|.|+++.++.-=. +-=..-+|..+.|-|..|
T Consensus 7 LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyY 68 (103)
T 3jtg_A 7 LWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYY 68 (103)
T ss_dssp HHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence 5556778899987 5789999985 459999998887764211 111356788888888776
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.26 E-value=1.9 Score=31.95 Aligned_cols=32 Identities=6% Similarity=0.170 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..+.+|..||+.||.++..|..++..+++..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999888877543
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.02 E-value=3.2 Score=33.68 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 245 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~ 245 (384)
....+..+.+.|.+||..|..|+.++++-...|-.+|..+
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3467889999999999999999999999988888777764
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.76 E-value=1.1 Score=33.30 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=26.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..+.+|..+.+.|..||..|..|+..++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678888899999999999999998887764
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.26 E-value=1.7 Score=32.57 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=27.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+...+..|..||+.|+.+...|..|+..++.+.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999998764
No 31
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=77.55 E-value=2 Score=35.18 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
.....|..|.++|++||..+..|+..+|..|+.+
T Consensus 55 ~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 55 NEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777777777777654
No 32
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=76.57 E-value=0.99 Score=36.85 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCCCCceEEcCCC-CeEEEe--CCchhhhhhccC--CCCCCCccchhhcccccc
Q 016692 26 LTKTYQLVDDPTTDHVVSWGEDD-TTFVVW--RPPEFARDLLPN--YFKHNNFSSFVRQLNTYG 84 (384)
Q Consensus 26 l~KLy~mLdDp~~~~IIsWs~dG-~sFVI~--d~~~F~~~VLPk--yFkhsnfsSFvRQLN~YG 84 (384)
..=|.++|+|++..++|+|...+ ..|.+. |+++.++.-=.+ -=..-+|...-|-|..|.
T Consensus 5 wqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY 68 (89)
T 1pue_E 5 YQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYG 68 (89)
T ss_dssp HHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHH
Confidence 34577889999999999998644 578775 677776642221 112457888888887773
No 33
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=78.21 E-value=0.52 Score=40.96 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCceEEcCCC-CeEEEeCCchhhhhhccC-CCCCCCccchhhccccc
Q 016692 27 TKTYQLVDDPTTDHVVSWGEDD-TTFVVWRPPEFARDLLPN-YFKHNNFSSFVRQLNTY 83 (384)
Q Consensus 27 ~KLy~mLdDp~~~~IIsWs~dG-~sFVI~d~~~F~~~VLPk-yFkhsnfsSFvRQLN~Y 83 (384)
.=|.+||+|+++.++|+|...+ .-|.+.|+++.++.-=.+ -=..-||...-|-|..|
T Consensus 9 qFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyY 67 (128)
T 2lf8_A 9 DYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHY 67 (128)
Confidence 4467889999999999998854 589999997766521111 00123455555555544
No 34
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=76.41 E-value=2.5 Score=32.08 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..+.+|..+-+.|..+|..|..|+.+++.++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999999999888653
No 35
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=76.23 E-value=2 Score=39.40 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELA 229 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa 229 (384)
..+++|..+|+.|.+||.+|.+|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999999964
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.59 E-value=4 Score=30.16 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 210 LSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 210 LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
-..|.|.||+||..|..++..+++...++-.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999998888888887777643
No 37
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=75.42 E-value=4.1 Score=27.78 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
..|.+.-|.|..+|..|..|.+++|.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4678888999999999999999999875
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.18 E-value=6.8 Score=29.05 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
....|.++.+.|..+|..|..|+..++.-+..|-.+|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999888876665
No 39
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.86 E-value=2.4 Score=33.66 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
....+.++.+.|.+||..|..|+..+++-+..|-.+|.+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999998887666554433
No 40
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.85 E-value=3.7 Score=34.36 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
..+.+|..|.+|||+||..|++|=..-++
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788999999999999999988655443
No 41
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=72.84 E-value=9.1 Score=28.82 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=30.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
...+.+|.++|..|+.+...|..|+..+|.+.-+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999988654
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.39 E-value=9.9 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 217 LRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 217 LRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
|+++|..|..|+..-+.....||.-
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666665555555543
No 43
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=69.17 E-value=7.2 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+..|.+.-|.|-.+|..|..|++++|++.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35688899999999999999999999874
No 44
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=68.19 E-value=12 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
.+...|||+|-++...--.|++++|+--.++.
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45678999999999999999999998877663
No 45
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=67.94 E-value=1.4 Score=32.57 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELA 229 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa 229 (384)
+...+..|..||.+|+.++..|..++.
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688899999999999999987764
No 46
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.10 E-value=7 Score=28.05 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=19.4
Q ss_pred chhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNM-------LMSELAHMRKL 234 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~-------L~~ELa~mKkl 234 (384)
...++.|..|||-|++.|-. |..|++.+||.
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887743 44455555443
No 47
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.66 E-value=2.9 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
+...+..|..||..|+.+...|..+|.+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888999999999999999988863
No 48
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.96 E-value=4.9 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
..-.+...|++.|||.|..|..++..
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999988754
No 49
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.42 E-value=4 Score=32.19 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+..|.+++++|..|+..|..|...+++..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 50
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.39 E-value=15 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
+..|.+.-|.|-.+|..|..|.+++|++...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4568888999999999999999999998654
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.70 E-value=3.3 Score=32.33 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mK 232 (384)
+.+|.++|+.|..||..|..++..|+
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 52
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=61.91 E-value=13 Score=25.23 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..|.+.-|.|-.+|..|..|++++|.+..
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 46788889999999999999999998754
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=61.54 E-value=15 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~ 237 (384)
+..|.+.-|.|-.+|..|-.|.+++|++..+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3468889999999999999999999998654
No 54
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=59.32 E-value=15 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
+..|.+.-|.|-.+|..|..|.+++|++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 456888889999999999999999998764
No 55
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=59.31 E-value=0.083 Score=44.60 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
....|..|.|+|++||..|..|+..+|..|+.|..|...
T Consensus 66 e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~~~a~s 104 (107)
T 3a5t_A 66 QKAELQQEVEKLASENASMKLELDALRSKYEALQNFART 104 (107)
T ss_dssp HHTTTSSTTTTTTSTTSHHHHTTTSSSSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888899999999999999999999999877543
No 56
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=57.97 E-value=16 Score=25.07 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
+..|.+.-|.|-.+|..|..|++++|++..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 346788889999999999999999998753
No 57
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.25 E-value=7.2 Score=31.15 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 016692 210 LSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 210 LseENErLRreN~~L~~ELa~mK 232 (384)
|.+|.++|+++|..|..+|..++
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455666666666655543
No 58
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=57.11 E-value=25 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
..+.+-.+||+.|..++..|..|++.+|+...++-.+
T Consensus 39 ~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 39 KALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677899999999999999999999887666443
No 59
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=56.53 E-value=17 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
++.|..|..+-..||..|.+|++++..-|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 56788888888999999999999987766
No 60
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.28 E-value=21 Score=24.25 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
..|.+..|.|-.+|..|..|.+++|++..
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46888899999999999999999999864
No 61
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.03 E-value=8.6 Score=28.44 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=24.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+..+..+.++.++|.+||..|..|+.+++.
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788999999999999999999988775
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.82 E-value=10 Score=31.49 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+..|.++++.|++||..|++|...+.-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777666543
No 63
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=55.41 E-value=7.6 Score=30.96 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=17.7
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMS 226 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ 226 (384)
+..++.+|.+.|.+|..||..|+.
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888877653
No 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.92 E-value=5.9 Score=30.86 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+..|.+++++|..+...|..|...++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444444444444444444443
No 65
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=52.74 E-value=25 Score=24.07 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=26.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYN 236 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN 236 (384)
+..|.+.-|.|-.+|..|..|.+++|++..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 346788889999999999999999999864
No 66
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=52.55 E-value=13 Score=29.14 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcC
Q 016692 213 DNERLRRSNNMLMSELAH----MRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 213 ENErLRreN~~L~~ELa~----mKklcN~Ii~FL~n~v~ 247 (384)
+.++|||+++.|+.||.. +-+-+.+|+.|...|..
T Consensus 18 ~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~ 56 (73)
T 1got_G 18 EKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSG 56 (73)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCC
Confidence 456777777777777764 56788999999988743
No 67
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.51 E-value=22 Score=32.77 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
..++.++|.+|..+|..|.++..+++..+++++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888887776665
No 68
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=49.04 E-value=28 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+.+|..+|.+|-..|..|...|...|.
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~ 37 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQ 37 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444443
No 69
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.02 E-value=22 Score=22.92 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~ 230 (384)
.|...|.||+.|.+.|.-|++.
T Consensus 4 rlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 4555555666655555555554
No 70
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=48.91 E-value=11 Score=24.25 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016692 214 NERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 214 NErLRreN~~L~~ELa~mK 232 (384)
..||+..|+.|.+|++.+.
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 4689999999999999764
No 71
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=48.91 E-value=30 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+..|.+.-|.|-.+|..|..|++++|++.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34678888999999999999999999875
No 72
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.66 E-value=18 Score=30.00 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=21.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
...+..|..||++||+++..|-.||.+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888876
No 73
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.05 E-value=24 Score=28.51 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
..+.+-.+||++|.++...+..|++.+|+--..+
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677899999999999999999888765443
No 74
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.25 E-value=13 Score=28.83 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~ 230 (384)
.|..||+.||.++..|..||..
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 75
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=46.93 E-value=1.1 Score=34.88 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+..+|+++|++||..|..|++-+|+.
T Consensus 61 ~~~~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 61 AVSEAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp HHHTHHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999999998776654
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.15 E-value=38 Score=26.99 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=33.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHVK 247 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v~ 247 (384)
...+..|..|+.+||=.++.+..||.+|++.-.+++.=|-+.+.
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888899999999999988887766654444
No 77
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.55 E-value=38 Score=27.61 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
.....|.+|+..|+.+...|..|++++++--+.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999987665543
No 78
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.03 E-value=46 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+..|.+.-|.|-.+|..|..|..++|.+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34577777788888888888888887764
No 79
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=41.33 E-value=12 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLY 235 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklc 235 (384)
+.+|..|++.|..+-.-+.-|+.++|+--
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555555555543
No 80
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=40.60 E-value=41 Score=28.63 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLM---------------SELAHMRKLYNDIIY 240 (384)
Q Consensus 209 ~LseENErLRreN~~L~---------------~ELa~mKklcN~Ii~ 240 (384)
=|.-|.||||++...+. +|+++.|+.|+-+|.
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lq 82 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFH 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999887654 677888888876654
No 81
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=40.21 E-value=31 Score=29.42 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=24.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mK 232 (384)
...+..|.+|+..|+|++..|..|++..+
T Consensus 31 ~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 31 PKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999998888763
No 82
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.99 E-value=24 Score=25.15 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=16.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSEL 228 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~EL 228 (384)
...++|.+...-|.+||.||++=|
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 445667777777777787777644
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.88 E-value=59 Score=26.07 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
++-|..|++.||.+|..|..|...++.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556888888888887776665444
No 84
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.57 E-value=55 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=25.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+.+-.+||++|.++...+..|++.||.-
T Consensus 27 ~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 27 KALYEALKENEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667789999999999999999988874
No 85
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.13 E-value=56 Score=26.39 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
..|-++++.|..|+..|.+|+..+|.+....=|
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888888888888888887766543
No 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.78 E-value=44 Score=32.88 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNHV 246 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~v 246 (384)
.+.+|+++|++||+.|..|+....+.-.+..+-+++.|
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 45556666667777777766666666666666555554
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=38.51 E-value=35 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~ 230 (384)
......|.+|+++|+++|..|..+|.+
T Consensus 53 ~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 53 EDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355567777777777777777777764
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.36 E-value=38 Score=28.35 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=35.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcC
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI---IYFVQNHVK 247 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKklcN~I---i~FL~n~v~ 247 (384)
+...+.++.|.+-+|+||+.-..+|+.++|+.|..+ +.+|+.-++
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999999999999999999999998654 445554444
No 89
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.07 E-value=50 Score=27.98 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=14.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSE 227 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~E 227 (384)
+..+..|.-|+++||.+...|..|
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E 37 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777666655444
No 90
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=37.48 E-value=28 Score=23.82 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHM 231 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~m 231 (384)
..-..|.-|-|.||+.+..|...|.++
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344568889999999999999888765
No 91
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.85 E-value=39 Score=21.78 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mK 232 (384)
.+|.=||..|....+.|.+.++.+|
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888777765
No 92
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=36.81 E-value=16 Score=26.93 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSEL 228 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~EL 228 (384)
..+..|.+||+.|+.++..|..+|
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457788889999999888887654
No 93
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.38 E-value=35 Score=26.37 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
.-.+=...|..++..|..|+..+++....|-..|
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444433
No 94
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.40 E-value=19 Score=30.06 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRR-------SNNMLMSELAHMRKLYN 236 (384)
Q Consensus 205 ~~~~~LseENErLRr-------eN~~L~~ELa~mKklcN 236 (384)
..+..|.+||.|||+ ....|-.|+.+++.--.
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 334455566666665 34445555555554433
No 95
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=34.33 E-value=27 Score=29.16 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mK 232 (384)
.....+|+++|+.....|..||.++|
T Consensus 91 ~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 91 YEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666666666666665
No 96
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.59 E-value=79 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDII 239 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii 239 (384)
..+++-....++|-+=|+.|..||..|++...++-
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 44556667788999999999999999999877663
No 97
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=32.77 E-value=28 Score=31.61 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=45.3
Q ss_pred hHHH-HHHHhhcCCCCCCceEEcCCCCeEEE-eCCchhhhhh-ccCCC-CCCCccchhhc-----ccccce
Q 016692 24 PFLT-KTYQLVDDPTTDHVVSWGEDDTTFVV-WRPPEFARDL-LPNYF-KHNNFSSFVRQ-----LNTYGF 85 (384)
Q Consensus 24 ~Fl~-KLy~mLdDp~~~~IIsWs~dG~sFVI-~d~~~F~~~V-LPkyF-khsnfsSFvRQ-----LN~YGF 85 (384)
.|+. .+|.++=.-.. +...|+++++.|+| .|..-|..-| ||+.. ..-+|..|+-- |.+-||
T Consensus 88 ~fI~k~~Wk~lfgk~~-d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 88 EVLSKCAFKIFLNITP-NITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp HHHHHHHHHHHSSCCC-CCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 5884 48988877654 46899999999999 6766555544 77766 66788888754 677888
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.11 E-value=71 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=24.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
.....|.+||+||+++...+..+++.++..|.|++.-
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 442 HKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 3455666677777777777777777777666666543
No 99
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=30.80 E-value=87 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=20.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
..+.+-.+||+.|..++..|..|++.+|+-
T Consensus 108 ~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeE 137 (209)
T 2wvr_A 108 KALYEALKENEKLHKEIEQKDNEIARLKKE 137 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888877776666666543
No 100
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=30.63 E-value=47 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
-+..|.+++++|..||..|..++.+.+.
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3566777788888888877777766553
No 101
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.96 E-value=1.3e+02 Score=22.67 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=25.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELA---HMRKLYNDIIY 240 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa---~mKklcN~Ii~ 240 (384)
-+.+-+|.+|...|++||..|.+=|. +.||..+.|+.
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888876554 44555555543
No 102
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.57 E-value=42 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=21.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSE 227 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~E 227 (384)
+...+.+|..||..|+.|...|..=
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3567889999999999999998753
No 103
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=29.16 E-value=1.1e+02 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=20.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 016692 212 EDNERLRRSN-NMLMSELAHMRKLYNDIIYFVQNHV 246 (384)
Q Consensus 212 eENErLRreN-~~L~~ELa~mKklcN~Ii~FL~n~v 246 (384)
+|.|+|+.|. .-+++||.+|| ++||.=+.+.+
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K---~EIIeAi~~El 39 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVK---EEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4667777764 45677777776 56666555444
No 104
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.83 E-value=1.3e+02 Score=24.08 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016692 208 TALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 245 (384)
Q Consensus 208 ~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~ 245 (384)
..|+||..+.|-+|..+.++|...++.+.+|..=|.+.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999998887766553
No 105
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.70 E-value=44 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSEL 228 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~EL 228 (384)
...+..|..+|+.|..|+..|..=|
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4678899999999999999987533
No 106
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=27.72 E-value=65 Score=21.40 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016692 213 DNERLRRSNNMLMSELAHMR 232 (384)
Q Consensus 213 ENErLRreN~~L~~ELa~mK 232 (384)
|...|+.|...|..|++.+|
T Consensus 3 eiaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777766665
No 107
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.60 E-value=94 Score=28.24 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=33.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFV 242 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL 242 (384)
.-+.-+.+.+.+|+.+|..|.+|-.+|++--|+++.=|
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677999999999999999999999999999987533
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.46 E-value=49 Score=30.82 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNN---MLMSELAHMRKLYN 236 (384)
Q Consensus 207 ~~~LseENErLRreN~---~L~~ELa~mKklcN 236 (384)
-..|.+||.+|+.++. .|..|..++|++.+
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888888886654 45557777777654
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.00 E-value=45 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
+..|..+++.|...|..|..+|.++|+....+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444433
No 110
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.37 E-value=1e+02 Score=30.56 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016692 206 SVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQN 244 (384)
Q Consensus 206 ~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n 244 (384)
..+++++|.+.|++++..+..+.....+.||+-+.=|..
T Consensus 4 ~~~~~~~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeq 42 (333)
T 4etp_B 4 EIAALEKEIAALEKEIAALEKEISKQEKFYNDTYNTVCK 42 (333)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999988777765
No 111
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.26 E-value=1.7e+02 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
....+|.+|..+|.+|..+|-.=..+.|.+=|+-.++
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4557899999999999999877777777766655443
No 112
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.24 E-value=1.5e+02 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQNH 245 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~n~ 245 (384)
+-.|.+..|.+-..+..+..|++++||+.-.|...|+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~ 54 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRL 54 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457888889999999999999999999998887777654
No 113
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=24.22 E-value=50 Score=30.25 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=44.6
Q ss_pred hHHH-HHHHhhcCCCCCCceEEcCCCCeEEE-eCCchhhhhh-ccCCCCCCCccchhhc-----cccccee
Q 016692 24 PFLT-KTYQLVDDPTTDHVVSWGEDDTTFVV-WRPPEFARDL-LPNYFKHNNFSSFVRQ-----LNTYGFR 86 (384)
Q Consensus 24 ~Fl~-KLy~mLdDp~~~~IIsWs~dG~sFVI-~d~~~F~~~V-LPkyFkhsnfsSFvRQ-----LN~YGFr 86 (384)
.|+. .+|.++=.-.. +.+.|+++++.|+| .|..-+..-| ||+-.+.-+|..|+-- |.+-||.
T Consensus 85 ~fI~k~~Wk~lFgk~a-d~L~~t~~~~~Y~L~~D~nPL~~fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~ 154 (200)
T 1sz7_A 85 DVIAKVAFKMYLGITP-SITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMA 154 (200)
T ss_dssp HHHHHTHHHHHHSCCC-EEECCCTTSCEEEEEESSCTTCTTCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHhCCCC-ccceecCCCCEEEEEECCcHHHHhccCCccccCCchhhhHHHHHHHHHHhCCCE
Confidence 4774 47877766544 57899999999999 6665444433 6765566788888854 7788998
No 114
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.75 E-value=1.3e+02 Score=28.03 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
.|-++++.|.-|+..|..|+..+|.|....-|
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777776654433
No 115
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION coordination, protein export, TAA, membrane protein, polar core; 1.85A {Salmonella enterica subsp}
Probab=23.55 E-value=77 Score=26.34 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 203 LNTSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 203 ~~~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
+..++.+|.+|=.-.-..+..|..|++|+|||
T Consensus 67 L~dsv~~L~DDALLWn~~~~~~~~~~~~~~~~ 98 (99)
T 2wpq_A 67 LSDSMKQIEDKIEEILSKIYHIENEIARIKKL 98 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHcchhhhhHHHHHHHHhc
Confidence 45778888888887788899999999999997
No 116
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.29 E-value=1.1e+02 Score=30.27 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=9.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELA 229 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa 229 (384)
+..|.++.+.|.++...|..|+.
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~ 34 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMK 34 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 117
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.72 E-value=79 Score=25.91 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
+..|.++.+.|+++...|..|+.+++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456888888888888888888887764
No 118
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.23 E-value=89 Score=26.56 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
..+..|.+||+...+|-.....|-..+-+.++++|..
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555555555555555543
No 119
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=22.16 E-value=43 Score=30.13 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 212 EDNERLRRSNNMLMSELAHMRKLYND 237 (384)
Q Consensus 212 eENErLRreN~~L~~ELa~mKklcN~ 237 (384)
+|.++|++|...|.+++.++|+.+.+
T Consensus 2 ~e~~~l~~~~~~l~~~~~~~~~~~~~ 27 (340)
T 1got_B 2 SELDQLRQEAEQLKNQIRDARKACAD 27 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57888999999999999888887654
No 120
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=21.81 E-value=91 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=17.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSE 227 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~E 227 (384)
+.-++.|..||.+|+...+.|.-.
T Consensus 5 nallasleaenkqlkakveellak 28 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999998877766543
No 121
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.42 E-value=1.2e+02 Score=25.98 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016692 209 ALSEDNERLRRSNNMLMSELAH 230 (384)
Q Consensus 209 ~LseENErLRreN~~L~~ELa~ 230 (384)
.|.+||+.|+.+|..|..++..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~ 47 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGR 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877666554
No 122
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.27 E-value=1.9e+02 Score=21.12 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDI 238 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~I 238 (384)
...+..|+..|++|-......+.||..|+...+++
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999988775
No 123
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.26 E-value=1.4e+02 Score=30.08 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=32.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 204 NTSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYFVQ 243 (384)
Q Consensus 204 ~~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~FL~ 243 (384)
+.-...|.+-+..+++....|+++|..+++.++++..++.
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~ 91 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTK 91 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4556778888899999999999999999998866655543
No 124
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.26 E-value=1.2e+02 Score=27.75 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKL 234 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKkl 234 (384)
--++.|..||.+|..++....+|+..+|+.
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~q 49 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQ 49 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778887777777777777766664
No 125
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=21.18 E-value=12 Score=31.11 Aligned_cols=52 Identities=21% Similarity=0.420 Sum_probs=36.3
Q ss_pred HHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhhccC-----CCCCCCccchhhccc
Q 016692 29 TYQLVDDPTTDHVVSWGEDDTTFVVWRPPEFARDLLPN-----YFKHNNFSSFVRQLN 81 (384)
Q Consensus 29 Ly~mLdDp~~~~IIsWs~dG~sFVI~d~~~F~~~VLPk-----yFkhsnfsSFvRQLN 81 (384)
|+++...=. .=.|+|-+|..+|||....+-++++|.- -|+-..|..|.-.|+
T Consensus 32 I~~lFs~fg-gv~I~WidDTsAlvvf~~~~~a~~al~~i~k~~~y~i~ty~e~~~~l~ 88 (100)
T 1whv_A 32 LYQLFSAFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKQ 88 (100)
T ss_dssp HHHHHTTTC-SCCCEEEETTEEEEECSCHHHHHHHHHHHHHCCSSEEEEHHHHHHHHC
T ss_pred HHHHhhccC-CEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHHhHHHHh
Confidence 444444322 4469999999999999998888887763 366666666655553
No 126
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=20.70 E-value=1.2e+02 Score=20.33 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 207 VTALSEDNERLRRSNNMLMSELAHMRK 233 (384)
Q Consensus 207 ~~~LseENErLRreN~~L~~ELa~mKk 233 (384)
++++.+|....++|-....-||+..|+
T Consensus 4 laaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678888888888888888888887764
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.46 E-value=1.2e+02 Score=24.14 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=25.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIY 240 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~ 240 (384)
..+..|.++.+.|+.+...|..|+..++..+++|+.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~ 106 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLTP 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777888888888888888887776653
No 128
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.19 E-value=1.9e+02 Score=22.67 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016692 205 TSVTALSEDNERLRRSNNMLMSELAHMRKLYNDIIYF 241 (384)
Q Consensus 205 ~~~~~LseENErLRreN~~L~~ELa~mKklcN~Ii~F 241 (384)
.++..|..||..||-- |.+==.-||+.|.++..|
T Consensus 8 e~~q~ll~EN~~LreA---lkqsNq~mkeR~eeL~~w 41 (70)
T 3brv_B 8 ETLQRCLEENQELRDA---IRQSNQILRERCEELLHF 41 (70)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567888888877632 222223466777777555
Done!