BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016693
         (384 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NSB|A Chain A, The 2.2 Angstroms Resolution Crystal Structure Of
           Influenza B Neuraminidase And Its Complex With Sialic
           Acid
 pdb|1NSB|B Chain B, The 2.2 Angstroms Resolution Crystal Structure Of
           Influenza B Neuraminidase And Its Complex With Sialic
           Acid
 pdb|1NSC|A Chain A, Influenza B Virus Neuraminidase Can Synthesize Its Own
           Inhibitor
 pdb|1NSC|B Chain B, Influenza B Virus Neuraminidase Can Synthesize Its Own
           Inhibitor
 pdb|1NSD|A Chain A, Influenza B Virus Neuraminidase Can Synthesize Its Own
           Inhibitor
 pdb|1NSD|B Chain B, Influenza B Virus Neuraminidase Can Synthesize Its Own
           Inhibitor
 pdb|1A4G|A Chain A, Influenza Virus BBEIJING187 NEURAMINIDASE COMPLEXED WITH
           ZANAMIVIR
 pdb|1A4G|B Chain B, Influenza Virus BBEIJING187 NEURAMINIDASE COMPLEXED WITH
           ZANAMIVIR
 pdb|1A4Q|A Chain A, Influenza Virus B/beijing/1/87 Neuraminidase Complexed
           With Dihydropyran-phenethyl-propyl-carboxamide
 pdb|1A4Q|B Chain B, Influenza Virus B/beijing/1/87 Neuraminidase Complexed
           With Dihydropyran-phenethyl-propyl-carboxamide
          Length = 390

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 125 IVTSGPESSAKVEIVVLEGDFDGDESDNWTIEEFKNNIVREREGKKPLLTGDAFLTLKEG 184
           I   GP+S+A ++I   E   D       T   + NNI+R +E     + GD +L + +G
Sbjct: 115 IGVDGPDSNALIKIKYGEAYTD-------TYHSYANNILRTQESACNCIGGDCYLMITDG 167

Query: 185 IGS 187
             S
Sbjct: 168 SAS 170


>pdb|3AWD|A Chain A, Crystal Structure Of Gox2181
 pdb|3AWD|B Chain B, Crystal Structure Of Gox2181
 pdb|3AWD|C Chain C, Crystal Structure Of Gox2181
 pdb|3AWD|D Chain D, Crystal Structure Of Gox2181
          Length = 260

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 11 KARAENCPEDKRRKGHTFKNVVQEVMKIQSVQHFLEPVLE 50
          +A A    ED R +GH   +VV +V   +SVQ+ +  V E
Sbjct: 47 EAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,281,554
Number of Sequences: 62578
Number of extensions: 458517
Number of successful extensions: 1046
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 4
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)