BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016693
         (384 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
           PE=2 SV=2
          Length = 435

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 58  KEEVELALKKHLANM-KRNSEKEVHFPESRSL--QLQFLNNLSLPVFTGARIEGDDSTIK 114
           ++E E AL+K    + K  SE E    ES ++  +LQ  NNLS+  F G R E ++  IK
Sbjct: 270 RKETEKALRKRNDELEKMRSESETQITESYTVIRKLQEKNNLSMETFRGIREEQEELKIK 329

Query: 115 VALVDTLTGQ 124
           +  V  L G+
Sbjct: 330 LREVSKLKGK 339


>sp|B1YJK3|MURB_EXIS2 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Exiguobacterium
           sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
           GN=murB PE=3 SV=1
          Length = 304

 Score = 32.3 bits (72), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 134 AKVEIVVLEGDFDGDESDNWTIEEFKNNIVREREGKKPL 172
           +K E ++LEG F   E D   I+E  +++  +RE K+PL
Sbjct: 181 SKKEYIILEGRFSLTEGDPALIKEMMDDLTHKRETKQPL 219


>sp|Q5R7K6|EMC1_PONAB ER membrane protein complex subunit 1 OS=Pongo abelii GN=EMC1 PE=2
           SV=1
          Length = 996

 Score = 32.3 bits (72), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 24/127 (18%)

Query: 46  EPVLEPLIRRVVKEEVELALKKHLANMKRNSEKEVH----FPESRSLQLQFLNNLSLPVF 101
           E  + P +RR+VK              KR+SE  VH        RS+  + LN   L V 
Sbjct: 700 ELTIPPEVRRIVK-----------VKGKRSSE-HVHSQGRVMGDRSVLYKSLNPNLLAVV 747

Query: 102 TGARIEGDDST-IKVALVDTLTGQIVTSGPESSAKVEIVVLEGDFDGDESDNWTIEEFKN 160
           T +     + T I + L+D +TG+I+ S  +  AK  + ++        S+NW + ++ N
Sbjct: 748 TESTDAHHERTFIGIFLIDGVTGRIIHSSAQKKAKGPVHIV-------HSENWVVYQYWN 800

Query: 161 NIVRERE 167
              R  E
Sbjct: 801 TKARRNE 807


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,801,405
Number of Sequences: 539616
Number of extensions: 6265221
Number of successful extensions: 16251
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 16248
Number of HSP's gapped (non-prelim): 21
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)