Query 016693
Match_columns 384
No_of_seqs 127 out of 148
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 17:52:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 92.8 0.02 7E-07 44.4 0.1 62 246-314 5-67 (70)
2 2kz3_A Putative uncharacterize 89.9 0.19 6.6E-06 40.3 3.0 39 263-306 17-55 (83)
3 2i1q_A DNA repair and recombin 77.4 0.54 1.8E-05 44.0 0.4 58 248-312 3-60 (322)
4 2z43_A DNA repair and recombin 74.2 0.67 2.3E-05 43.8 0.1 56 249-311 13-68 (324)
5 3lda_A DNA repair protein RAD5 73.6 1.5 5.2E-05 43.5 2.5 62 248-314 81-142 (400)
6 1b22_A DNA repair protein RAD5 70.6 0.63 2.2E-05 39.2 -0.9 62 249-315 24-85 (114)
7 1v5w_A DMC1, meiotic recombina 68.4 1.1 3.9E-05 42.8 0.3 58 249-311 26-83 (343)
8 1pzn_A RAD51, DNA repair and r 68.4 2.2 7.4E-05 41.2 2.2 59 249-314 36-94 (349)
9 4dez_A POL IV 1, DNA polymeras 55.0 1.8 6.3E-05 41.6 -1.0 48 250-302 180-227 (356)
10 3im1_A Protein SNU246, PRE-mRN 48.5 7.1 0.00024 37.2 1.9 54 249-309 158-211 (328)
11 3pzp_A DNA polymerase kappa; D 47.8 6.7 0.00023 40.3 1.8 52 249-310 339-390 (517)
12 3osn_A DNA polymerase IOTA; ho 46.5 3.1 0.0001 41.6 -1.0 49 252-309 238-286 (420)
13 2aq4_A DNA repair protein REV1 43.7 5.9 0.0002 39.5 0.6 41 250-294 243-285 (434)
14 1t94_A Polymerase (DNA directe 41.5 9.5 0.00033 38.2 1.7 51 249-309 283-333 (459)
15 2q0z_X Protein Pro2281; SEC63, 40.0 16 0.00055 35.0 3.0 55 249-310 162-216 (339)
16 1z3e_B DNA-directed RNA polyme 37.4 18 0.00063 28.1 2.4 35 264-303 22-56 (73)
17 3k4g_A DNA-directed RNA polyme 36.1 24 0.0008 28.5 2.9 38 264-306 25-62 (86)
18 4f4y_A POL IV, DNA polymerase 29.4 8.8 0.0003 37.3 -0.8 49 252-309 183-231 (362)
19 1jx4_A DNA polymerase IV (fami 29.4 6.2 0.00021 37.9 -1.8 53 250-311 180-232 (352)
20 3ul0_C Nuclear CAP-binding pro 29.0 33 0.0011 21.8 2.0 21 1-24 3-23 (26)
21 3bq0_A POL IV, DBH, DNA polyme 28.5 5.8 0.0002 38.1 -2.2 54 250-312 181-234 (354)
22 3gqc_A DNA repair protein REV1 28.4 8.9 0.0003 39.5 -1.0 40 250-294 317-356 (504)
23 3mab_A Uncharacterized protein 27.0 13 0.00043 30.3 -0.1 72 252-363 8-79 (93)
24 3gfk_B DNA-directed RNA polyme 25.1 21 0.0007 28.4 0.8 36 264-304 29-64 (79)
25 3bqs_A Uncharacterized protein 23.5 16 0.00055 29.6 -0.1 75 252-366 8-82 (93)
26 1u9l_A Transcription elongatio 23.4 25 0.00087 26.9 1.0 49 260-313 16-64 (70)
27 1coo_A RNA polymerase alpha su 22.0 41 0.0014 27.7 2.0 17 264-280 37-53 (98)
28 2va8_A SSO2462, SKI2-type heli 21.2 27 0.00092 36.1 0.9 49 251-309 660-708 (715)
29 3euh_C MUKE, chromosome partit 20.4 89 0.003 29.5 4.2 74 264-338 107-186 (234)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.82 E-value=0.02 Score=44.37 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=51.1
Q ss_pred CCCcceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhcc-ccCC
Q 016693 246 LFDEVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHART-CVLD 314 (384)
Q Consensus 246 L~DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAkt-Cvl~ 314 (384)
..|++-.|++|+..-+ ++|.++||+||+|+.. .+++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887777655 9999999999999754 5888899987 7899999999999998 6553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=89.86 E-value=0.19 Score=40.29 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=30.4
Q ss_pred cccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHH
Q 016693 263 HKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVE 306 (384)
Q Consensus 263 hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~ 306 (384)
-++|.+++|.||+||+. .|+.+|.+++ |+|-+.=-.+..
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r 55 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRR 55 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHH
Confidence 38899999999999975 8999999998 556554444443
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.44 E-value=0.54 Score=44.02 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=42.3
Q ss_pred CcceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhcccc
Q 016693 248 DEVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCV 312 (384)
Q Consensus 248 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCv 312 (384)
+++..|++|+. ..-++|+++||+||+|++. .++..|-++. |+|.+.=+.+++.|+.+.
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~ 60 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLC 60 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhh
Confidence 35666775555 4559999999999999985 4677777776 678777777777777664
No 4
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.17 E-value=0.67 Score=43.82 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTC 311 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktC 311 (384)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~ 68 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDA 68 (324)
T ss_dssp ---------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhh
Confidence 68888877665 4499999999999999853 455566665 55666666666666654
No 5
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=73.56 E-value=1.5 Score=43.51 Aligned_cols=62 Identities=19% Similarity=0.106 Sum_probs=49.5
Q ss_pred CcceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccCC
Q 016693 248 DEVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVLD 314 (384)
Q Consensus 248 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl~ 314 (384)
.++-+|+..|-.-..-++|.++||+||++++. .++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888555545569999999999999875 6888999987 68888888888888876543
No 6
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=70.56 E-value=0.63 Score=39.24 Aligned_cols=62 Identities=23% Similarity=0.209 Sum_probs=50.1
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccCCC
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVLDK 315 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl~~ 315 (384)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889855444456699999999999975 556888999986 789999999999999877544
No 7
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.42 E-value=1.1 Score=42.82 Aligned_cols=58 Identities=24% Similarity=0.193 Sum_probs=0.0
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTC 311 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktC 311 (384)
++++|+.-|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|..+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~---~~~~~l~~~~--~is~~~~~~~~~~a~~~ 83 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM---TTRRALCNVK--GLSEAKVDKIKEAANKL 83 (343)
T ss_dssp ---------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CCCHHHHHHHHHHHHhh
Confidence 6889984444445559999999999999985 3455565554 45555555555555544
No 8
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.38 E-value=2.2 Score=41.19 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=45.3
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccCC
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVLD 314 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl~ 314 (384)
++.+|.+|+. ...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 4666665544 5669999999999999875 5788888887 67877778888888776543
No 9
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=55.00 E-value=1.8 Score=41.64 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=34.3
Q ss_pred ceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHH
Q 016693 250 VWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWE 302 (384)
Q Consensus 250 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~ 302 (384)
|-.|-+||+.-. ++|...||+|++|+. ..++..|++.||..+-...|+
T Consensus 180 v~~l~GiG~~~~--~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~~~g~~l~~ 227 (356)
T 4dez_A 180 PDALWGVGPKTT--KKLAAMGITTVADLA---VTDPSVLTTAFGPSTGLWLLL 227 (356)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCSHHHHH---TSCHHHHHHHHCHHHHHHHHH
T ss_pred HHHHcCCchhHH--HHHHHcCCCeecccc---cCCHHHHHHHhCChHHHHHHH
Confidence 344446777544 899999999999986 468999999997533333343
No 10
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=48.46 E-value=7.1 Score=37.23 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=43.0
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHAR 309 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAk 309 (384)
+..-|.+|+.+-+ ++|.++||.|++|+.. .+++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 4566778887644 7789999999999865 5899999998 688888888777664
No 11
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=47.77 E-value=6.7 Score=40.32 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.8
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhcc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHART 310 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAkt 310 (384)
+|-+|-+||+.+. ++|...||+|++|+.++ +..|+..|| ...|..+.++|.-
T Consensus 339 PV~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 339 PIRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp BGGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred ChhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 3555567787655 99999999999999885 457888774 3568777777653
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=46.50 E-value=3.1 Score=41.56 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=36.0
Q ss_pred eeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhc
Q 016693 252 RLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHAR 309 (384)
Q Consensus 252 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAk 309 (384)
+|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+.+||.
T Consensus 238 ~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~ 286 (420)
T 3osn_A 238 EIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSF 286 (420)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHT
T ss_pred HccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhc
Confidence 33355554 459999999999999875 588999999974 24555666764
No 13
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=43.65 E-value=5.9 Score=39.47 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=32.2
Q ss_pred ceeeeeecccchhcccccc--cCCccHHHHHHHhccChHHHHHHHcc
Q 016693 250 VWRLEKIGKDGAFHKRLSR--ESINTVKDFLTLLVLDPSRLRHILGT 294 (384)
Q Consensus 250 VwRLekIgKdG~~hk~L~~--~~I~tV~dFL~l~~~d~~kLr~iLg~ 294 (384)
|-.|-+||+ ..-++|.. .||+|++|+.++. +++.|++.||.
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~ 285 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS 285 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH
Confidence 444555665 44589999 8999999999874 78899999974
No 14
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=41.47 E-value=9.5 Score=38.17 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=37.5
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHAR 309 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAk 309 (384)
+|-+|-+||+.+. ++|+..||+|++|+.++ +..|++.||. +.|..+..+|+
T Consensus 283 pv~~l~GiG~~~~--~~L~~lGI~T~gdL~~~----~~~L~~~fG~----~~~~~l~~~a~ 333 (459)
T 1t94_A 283 PIRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFSE----TSWHYFLHISL 333 (459)
T ss_dssp BGGGCTTSCHHHH--HHHHHTTCCBHHHHHHT----HHHHHHHSCH----HHHHHHHHHHT
T ss_pred CHHhcCCcCHHHH--HHHHHcCCCcHHHHHhh----HHHHHHHhCh----HhHHHHHHHHc
Confidence 3666667786554 89999999999998874 3569998853 44666666765
No 15
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=40.02 E-value=16 Score=34.95 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=43.0
Q ss_pred cceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhcc
Q 016693 249 EVWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHART 310 (384)
Q Consensus 249 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAkt 310 (384)
+..-|.+|+.+-+ ++|.++||.|++||.. .+++++..+| |+++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSEHI--KRCTDKGVESVFDIME---MEDEERNALL--QLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHH--CCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHHHH--HHHHhcCCCCHHHHHh---CCHHHHHHHH--CCCHHHHHHHHHHHHh
Confidence 4667888887543 7899999999999875 7899999999 4888777777666543
No 16
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=37.40 E-value=18 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=23.4
Q ss_pred ccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHH
Q 016693 264 KRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEV 303 (384)
Q Consensus 264 k~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~ 303 (384)
.-|..+||+||+|+++ ..++.|.++= |+-.|.-+.
T Consensus 22 NcLkragI~Tv~dL~~---~s~~dLlki~--n~G~kSl~E 56 (73)
T 1z3e_B 22 NCLKRAGINTVQELAN---KTEEDMMKVR--NLGRKSLEE 56 (73)
T ss_dssp HHHHHTTCCBHHHHHT---SCHHHHHTST--TCCHHHHHH
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHcC--CCCHHHHHH
Confidence 4578899999999877 4666676663 333444333
No 17
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=36.13 E-value=24 Score=28.47 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=25.1
Q ss_pred ccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHH
Q 016693 264 KRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVE 306 (384)
Q Consensus 264 k~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~ 306 (384)
.-|..+||+||+|+++. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 56889999999998774 555566652 344555555443
No 18
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=29.44 E-value=8.8 Score=37.34 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=35.0
Q ss_pred eeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhc
Q 016693 252 RLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHAR 309 (384)
Q Consensus 252 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAk 309 (384)
.|-+||+.- -++|...||+|++|+. ..++..|++.||. +....+..+|+
T Consensus 183 ~l~GiG~~~--~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 183 EIPGIGSVL--ARRLNELGIQKLRDIL---SKNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp TSTTCCSTT--HHHHHHTTCCBGGGGT---TSCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred hccCCCHHH--HHHHHHcCCChHHHHh---cCCHHHHHHHhCh----HHHHHHHHHhc
Confidence 333666654 4899999999999975 4688999999973 33444555554
No 19
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=29.41 E-value=6.2 Score=37.85 Aligned_cols=53 Identities=21% Similarity=0.330 Sum_probs=38.7
Q ss_pred ceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccc
Q 016693 250 VWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTC 311 (384)
Q Consensus 250 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktC 311 (384)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~ 232 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDE 232 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCC
Confidence 555556775 3458999999999999764 688999999964 2255566677643
No 20
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=28.98 E-value=33 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=13.8
Q ss_pred CCcccccccccccccCCCcccccC
Q 016693 1 MSQKRQQEDGKARAENCPEDKRRK 24 (384)
Q Consensus 1 m~~kr~~~~~~~~~~~~~~~kr~~ 24 (384)
|+..|-.|+. +.++|.++|+.
T Consensus 3 msrrrhsden---dggq~hkrr~t 23 (26)
T 3ul0_C 3 MSRRRHSDEN---DGGQPHKRRKT 23 (26)
T ss_dssp CCCCCCTTSC---SSCCCSCCCCC
T ss_pred cccccccccc---CCCCccccccc
Confidence 7777777755 45677766644
No 21
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=28.54 E-value=5.8 Score=38.12 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=38.8
Q ss_pred ceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhcccc
Q 016693 250 VWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCV 312 (384)
Q Consensus 250 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCv 312 (384)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 444445665 4558999999999999865 688999999964 22556667776433
No 22
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=28.37 E-value=8.9 Score=39.48 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=31.2
Q ss_pred ceeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHcc
Q 016693 250 VWRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGT 294 (384)
Q Consensus 250 VwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~ 294 (384)
|..|-+||+. .-++|...||+|++|+. ..++..|++.||.
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQ---YMTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHT---TSCHHHHHHHHCH
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHH---hccHHHHHHhhCh
Confidence 4444466664 44899999999999986 4688999999975
No 23
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.98 E-value=13 Score=30.27 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=48.1
Q ss_pred eeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccCCCcEEEEcCCCCCcceEE
Q 016693 252 RLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVLDKRVYLYCPPGTQQKSGV 331 (384)
Q Consensus 252 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl~~~~y~y~~~~~~~~v~l 331 (384)
.|-+||+.-. +.|.+.||+||+||..+ + +.+.|..+.++- .. +
T Consensus 8 dLPNig~~~e--~~L~~~GI~t~~~Lr~~---G------------a~~ay~rLk~~~-------------~~-------~ 50 (93)
T 3mab_A 8 ELPNIGKVLE--QDLIKAGIKTPVELKDV---G------------SKEAFLRIWEND-------------SS-------V 50 (93)
T ss_dssp GSTTCCHHHH--HHHHHTTCCSHHHHHHH---C------------HHHHHHHHHHHC-------------TT-------C
T ss_pred hCCCCCHHHH--HHHHHcCCCCHHHHHhC---C------------HHHHHHHHHHhC-------------CC-------C
Confidence 3445565433 78888999999887662 2 255566654421 11 1
Q ss_pred EEeccceeeeeeeCCEEeeCCCCChhhhhhhh
Q 016693 332 VFNVVGQVMGLLSECQYVPIDKLSETQKAYFP 363 (384)
Q Consensus 332 ~FN~i~~lvG~~~~g~y~s~~~L~~~qk~~v~ 363 (384)
-+|..|.|+||+-| ++...|++.+|....
T Consensus 51 ~~~~L~aL~gAi~G---~~w~~l~~~~K~~L~ 79 (93)
T 3mab_A 51 CMSELYALEGAVQG---IRWHGLDEAKKIELK 79 (93)
T ss_dssp CHHHHHHHHHHHHT---SCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CcHHHCCHHHHHHHH
Confidence 26778999999887 677888998887654
No 24
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.05 E-value=21 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=23.2
Q ss_pred ccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHH
Q 016693 264 KRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVT 304 (384)
Q Consensus 264 k~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~ 304 (384)
.-|..+||+||+|+++ ++++.|.++= |+-.|.-+.+
T Consensus 29 NcLk~agI~Tv~dL~~---~se~dLlki~--n~G~kSl~EI 64 (79)
T 3gfk_B 29 NCLKRAGINTVQELAN---KTEEDMMKVR--NLGRKSLEEV 64 (79)
T ss_dssp HHHHHTTCCBHHHHTT---CCHHHHTTST--TCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHh---CCHHHHHHcC--CCCHhHHHHH
Confidence 6688899999999876 4555565552 3334444443
No 25
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.46 E-value=16 Score=29.56 Aligned_cols=75 Identities=16% Similarity=0.148 Sum_probs=47.6
Q ss_pred eeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccCCCcEEEEcCCCCCcceEE
Q 016693 252 RLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVLDKRVYLYCPPGTQQKSGV 331 (384)
Q Consensus 252 RLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl~~~~y~y~~~~~~~~v~l 331 (384)
.|-+||+.-. +.|.+.||+||+||... +| .++|..+.+. .. .+.
T Consensus 8 ~LPNiG~~~e--~~L~~vGI~s~e~L~~~---Ga------------~~ay~rL~~~-------------~~-----~~c- 51 (93)
T 3bqs_A 8 ELPNIGKVLE--QDLIKAGIKTPVELKDV---GS------------KEAFLRIWEN-------------DS-----SVC- 51 (93)
T ss_dssp GSTTCCHHHH--HHHHHTTCCSHHHHHHH---HH------------HHHHHHHHTT-------------CT-----TCC-
T ss_pred cCCCCCHHHH--HHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHH-------------CC-----CCC-
Confidence 3445565433 88889999999988763 22 4445544432 11 122
Q ss_pred EEeccceeeeeeeCCEEeeCCCCChhhhhhhhhhH
Q 016693 332 VFNVVGQVMGLLSECQYVPIDKLSETQKAYFPYHI 366 (384)
Q Consensus 332 ~FN~i~~lvG~~~~g~y~s~~~L~~~qk~~v~~~~ 366 (384)
+|..|.|.||+-| ++...|++..|.......
T Consensus 52 -~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~~ 82 (93)
T 3bqs_A 52 -MSELYALEGAVQG---IRWHGLDEAKKIELKKFH 82 (93)
T ss_dssp -HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcC---CCHHHCCHHHHHHHHHHH
Confidence 2677888888866 677788888887765443
No 26
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=23.36 E-value=25 Score=26.95 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.5
Q ss_pred chhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhccccC
Q 016693 260 GAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHARTCVL 313 (384)
Q Consensus 260 G~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAktCvl 313 (384)
-..-++|.++|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 16 e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 16 EDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp HHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 345689999999999974 556887888875 7899999999999887654
No 27
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=22.02 E-value=41 Score=27.67 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.5
Q ss_pred ccccccCCccHHHHHHH
Q 016693 264 KRLSRESINTVKDFLTL 280 (384)
Q Consensus 264 k~L~~~~I~tV~dFL~l 280 (384)
.-|+.+||+||+|+++.
T Consensus 37 NcLkragI~Tv~dL~~~ 53 (98)
T 1coo_A 37 NCLKAEAIHYIGDLVQR 53 (98)
T ss_dssp HHHHTTTCCBHHHHHTS
T ss_pred HHHHHcCCCcHHHHHhC
Confidence 66889999999998764
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.20 E-value=27 Score=36.05 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=37.1
Q ss_pred eeeeeecccchhcccccccCCccHHHHHHHhccChHHHHHHHccCCCchhHHHHHHhhc
Q 016693 251 WRLEKIGKDGAFHKRLSRESINTVKDFLTLLVLDPSRLRHILGTGMSTKMWEVTVEHAR 309 (384)
Q Consensus 251 wRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLr~iLg~gms~k~W~~~v~HAk 309 (384)
.+|.+|+.. ..++|.++||.|++|+. .||++|.+++| .+.-+.+++-|+
T Consensus 660 ~qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 660 VQISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp HTSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hhCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 355566554 44788999999999965 78999999985 677777777554
No 29
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=20.42 E-value=89 Score=29.50 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=48.8
Q ss_pred ccccccCCccHHHHHHHhc--cChHHHHHHHccC--CCchhHHHHHHhhccccC--CCcEEEEcCCCCCcceEEEEeccc
Q 016693 264 KRLSRESINTVKDFLTLLV--LDPSRLRHILGTG--MSTKMWEVTVEHARTCVL--DKRVYLYCPPGTQQKSGVVFNVVG 337 (384)
Q Consensus 264 k~L~~~~I~tV~dFL~l~~--~d~~kLr~iLg~g--ms~k~W~~~v~HAktCvl--~~~~y~y~~~~~~~~v~l~FN~i~ 337 (384)
++|++.||.|+++...-+. .|+++|.++++.. =|+..-+++-+-.++|-- ..--.++...+ +.+..-+=.+||
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sLrrL~RlgmI~~~~~-d~~kf~iteavf 185 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGH-DSSKFRITESVF 185 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHTTSEEECSS-SSSEEEECGGGG
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhcCcEEEecC-CCCeEEecHHHH
Confidence 7899999999999887663 5899999999622 267777788888888752 22223444321 233434445554
Q ss_pred e
Q 016693 338 Q 338 (384)
Q Consensus 338 ~ 338 (384)
.
T Consensus 186 R 186 (234)
T 3euh_C 186 R 186 (234)
T ss_dssp G
T ss_pred h
Confidence 3
Done!