Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>016694
MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNN
LRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMP
ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR
YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH
GLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL
TSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNL
NDTIKKLFNEMNSKEKIEPTLQVQ

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  016694
        (384 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171589 - symbol:AT5G47260 species:3702 "Arabi...   117  0.00043   3


>TAIR|locus:2171589 [details] [associations]
            symbol:AT5G47260 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005525 "GTP
            binding" evidence=IEA] [GO:0006952 "defense response"
            evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase activity"
            evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0045036
            "protein targeting to chloroplast" evidence=RCA] InterPro:IPR000767
            InterPro:IPR002182 InterPro:IPR003593 InterPro:IPR006703
            Pfam:PF00931 Pfam:PF04548 PRINTS:PR00364 SMART:SM00382
            GO:GO:0005525 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0006952 GO:GO:0043531 GO:GO:0017111 EMBL:AB018117
            HOGENOM:HOG000238348 eggNOG:KOG4658 IPI:IPI00527968
            RefSeq:NP_199537.2 UniGene:At.55416 ProteinModelPortal:Q9LVT3
            SMR:Q9LVT3 PaxDb:Q9LVT3 PRIDE:Q9LVT3 EnsemblPlants:AT5G47260.1
            GeneID:834773 KEGG:ath:AT5G47260 TAIR:At5g47260 InParanoid:Q9LVT3
            OMA:CNILEIT PhylomeDB:Q9LVT3 Genevestigator:Q9LVT3
            GermOnline:AT5G47260 Uniprot:Q9LVT3
        Length = 948

 Score = 117 (46.2 bits), Expect = 0.00043, Sum P(3) = 0.00043
 Identities = 33/125 (26%), Positives = 62/125 (49%)

Query:   206 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 265
             N++ + I     +Q+ + P +  +N+ T+ + +C  L ++  L  +  L   G + +++C
Sbjct:   700 NILEITIDWRCTIQREIIPQF--QNIRTMTIHRCEYLRDLTWLLLAPCL---GELSVSEC 754

Query:   266 KMIEQIIQLQVGEEAKGCVV---FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322
               +E++I         G      F+ L  L LD LP L S       L FP LE++V+R+
Sbjct:   755 PQMEEVISKDKAMAKLGNTSEQPFQNLTKLVLDGLPKLESIYWT--PLPFPVLEYLVIRR 812

Query:   323 CPTMK 327
             CP ++
Sbjct:   813 CPELR 817

 Score = 51 (23.0 bits), Expect = 0.00043, Sum P(3) = 0.00043
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query:    67 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 126
             RN ++L +V+  ++LNA +  +     K  E+ L  L ++K + +  E I E P+   L 
Sbjct:    28 RNLEALHKVM--QDLNAMRNDLLKRLSKEEEIGLQGLQEVKEWISMVEEI-E-PKANRLL 83

Query:   127 IENCPDME 134
              E+  +++
Sbjct:    84 DESVSEIQ 91

 Score = 39 (18.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query:   318 VVVRQCPTMKIFS-----QGVVDAPKLN 340
             VV  +C T K+F+       ++D P  N
Sbjct:   915 VVTMECQTYKVFTPDCPINNMIDTPGTN 942


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       371   0.00086  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  251 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.73u 0.24s 30.97t   Elapsed:  00:00:02
  Total cpu time:  30.73u 0.24s 30.97t   Elapsed:  00:00:02
  Start:  Mon May 20 21:37:35 2013   End:  Mon May 20 21:37:37 2013

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