Query 016694
Match_columns 384
No_of_seqs 158 out of 1905
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 5.4E-22 1.2E-26 211.5 20.3 288 4-347 610-903 (1153)
2 PLN00113 leucine-rich repeat r 99.8 8.3E-21 1.8E-25 201.3 14.8 61 202-264 257-317 (968)
3 PLN03210 Resistant to P. syrin 99.8 6E-20 1.3E-24 195.9 18.5 276 2-330 631-910 (1153)
4 PLN00113 leucine-rich repeat r 99.8 4.1E-20 8.8E-25 196.1 15.0 236 3-265 116-366 (968)
5 KOG0444 Cytoskeletal regulator 99.7 4.7E-19 1E-23 166.9 -3.7 292 4-348 77-373 (1255)
6 KOG4194 Membrane glycoprotein 99.6 2.3E-16 5.1E-21 147.8 2.0 307 2-347 99-449 (873)
7 KOG4194 Membrane glycoprotein 99.6 5.6E-16 1.2E-20 145.3 3.4 312 5-347 78-426 (873)
8 KOG0444 Cytoskeletal regulator 99.6 1.8E-16 3.8E-21 149.7 -2.4 272 4-330 102-379 (1255)
9 PRK15387 E3 ubiquitin-protein 99.6 9.5E-14 2.1E-18 139.6 15.9 252 6-347 202-455 (788)
10 KOG0472 Leucine-rich repeat pr 99.5 1.6E-16 3.5E-21 142.8 -9.2 303 3-348 181-539 (565)
11 PRK15387 E3 ubiquitin-protein 99.4 3.6E-12 7.7E-17 128.4 13.6 235 5-326 222-458 (788)
12 KOG4341 F-box protein containi 99.4 3.1E-15 6.7E-20 135.3 -8.1 308 5-346 138-461 (483)
13 KOG0618 Serine/threonine phosp 99.3 7.4E-14 1.6E-18 137.6 -1.7 64 4-76 67-130 (1081)
14 KOG0472 Leucine-rich repeat pr 99.3 5.6E-15 1.2E-19 133.0 -9.2 262 7-348 47-308 (565)
15 KOG4341 F-box protein containi 99.3 2.8E-14 6E-19 129.2 -6.1 302 33-374 138-454 (483)
16 PRK15370 E3 ubiquitin-protein 99.3 9.9E-12 2.2E-16 125.7 11.3 243 6-347 179-425 (754)
17 PRK15370 E3 ubiquitin-protein 99.2 6.1E-11 1.3E-15 120.1 8.8 101 5-137 199-299 (754)
18 KOG4658 Apoptotic ATPase [Sign 99.1 1.8E-11 3.9E-16 125.8 2.4 284 4-332 544-848 (889)
19 KOG0618 Serine/threonine phosp 99.1 1.4E-11 3E-16 121.9 -1.2 253 5-299 219-488 (1081)
20 cd00116 LRR_RI Leucine-rich re 98.9 1.4E-10 3.1E-15 107.4 -1.4 39 30-69 20-61 (319)
21 KOG0617 Ras suppressor protein 98.9 6.4E-11 1.4E-15 95.3 -3.4 160 29-245 29-188 (264)
22 KOG0617 Ras suppressor protein 98.8 1.6E-10 3.5E-15 93.0 -3.8 83 174-264 99-182 (264)
23 KOG4658 Apoptotic ATPase [Sign 98.8 5.2E-09 1.1E-13 107.9 4.4 250 6-304 524-787 (889)
24 cd00116 LRR_RI Leucine-rich re 98.7 1E-09 2.3E-14 101.7 -1.4 119 3-131 21-148 (319)
25 KOG3207 Beta-tubulin folding c 98.6 7.4E-09 1.6E-13 95.0 -0.8 193 30-272 118-317 (505)
26 KOG2120 SCF ubiquitin ligase, 98.5 2.3E-09 5E-14 93.7 -5.9 89 34-134 186-274 (419)
27 KOG4237 Extracellular matrix p 98.5 3E-09 6.4E-14 96.3 -5.9 88 250-348 269-357 (498)
28 KOG3207 Beta-tubulin folding c 98.4 4E-08 8.6E-13 90.2 0.0 132 3-150 119-257 (505)
29 KOG1947 Leucine rich repeat pr 98.4 1.2E-08 2.5E-13 100.2 -4.3 97 31-134 186-283 (482)
30 PF14580 LRR_9: Leucine-rich r 98.4 2.3E-07 4.9E-12 77.3 3.7 108 3-132 17-125 (175)
31 KOG2120 SCF ubiquitin ligase, 98.2 5E-08 1.1E-12 85.5 -5.0 203 6-259 186-391 (419)
32 PF14580 LRR_9: Leucine-rich r 98.2 1.8E-06 3.9E-11 72.0 4.3 110 3-130 40-150 (175)
33 PRK15386 type III secretion pr 98.2 8.9E-06 1.9E-10 76.2 9.1 59 176-244 51-109 (426)
34 PRK15386 type III secretion pr 98.2 1.7E-05 3.7E-10 74.3 10.7 138 57-239 50-187 (426)
35 PF13855 LRR_8: Leucine rich r 98.2 3.6E-06 7.8E-11 57.4 4.7 58 5-69 1-59 (61)
36 KOG4237 Extracellular matrix p 98.2 5.2E-08 1.1E-12 88.4 -5.8 234 6-264 68-355 (498)
37 PF13855 LRR_8: Leucine rich r 98.1 4.2E-06 9.2E-11 57.0 4.0 60 33-104 1-60 (61)
38 KOG1947 Leucine rich repeat pr 98.0 3.5E-07 7.5E-12 89.7 -4.1 121 3-134 186-309 (482)
39 COG4886 Leucine-rich repeat (L 97.9 1.2E-05 2.7E-10 76.8 4.1 175 28-264 111-286 (394)
40 COG4886 Leucine-rich repeat (L 97.8 2.6E-05 5.7E-10 74.6 4.6 190 37-297 97-287 (394)
41 KOG2982 Uncharacterized conser 97.7 1.5E-05 3.2E-10 70.3 0.9 120 175-303 144-265 (418)
42 KOG0532 Leucine-rich repeat (L 97.6 3.2E-06 6.8E-11 80.5 -3.7 142 6-187 99-244 (722)
43 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.6E-10 78.4 2.3 108 5-130 122-230 (699)
44 KOG0532 Leucine-rich repeat (L 97.6 2.2E-06 4.8E-11 81.6 -5.5 65 169-240 181-245 (722)
45 KOG1259 Nischarin, modulator o 97.5 2.5E-05 5.4E-10 69.0 0.9 38 31-69 180-224 (490)
46 KOG1909 Ran GTPase-activating 97.5 8.2E-06 1.8E-10 73.3 -2.9 13 312-324 297-309 (382)
47 PF12799 LRR_4: Leucine Rich r 97.5 9.1E-05 2E-09 46.5 2.7 38 34-75 2-39 (44)
48 PLN03150 hypothetical protein; 97.5 0.00018 3.8E-09 72.8 6.2 82 35-131 420-501 (623)
49 PF12799 LRR_4: Leucine Rich r 97.5 0.00016 3.4E-09 45.4 3.7 41 5-51 1-41 (44)
50 KOG1259 Nischarin, modulator o 97.3 4.6E-05 1E-09 67.3 -0.7 56 59-130 284-339 (490)
51 KOG3665 ZYG-1-like serine/thre 97.2 0.0001 2.3E-09 74.6 1.2 36 34-69 123-158 (699)
52 PLN03150 hypothetical protein; 97.1 0.00078 1.7E-08 68.2 5.7 111 6-135 419-530 (623)
53 KOG1859 Leucine-rich repeat pr 97.1 9.3E-06 2E-10 79.5 -7.7 19 26-44 102-120 (1096)
54 KOG1909 Ran GTPase-activating 96.9 3.3E-05 7E-10 69.6 -5.7 228 3-266 56-309 (382)
55 KOG1644 U2-associated snRNP A' 96.5 0.0058 1.3E-07 51.3 5.7 89 29-129 60-149 (233)
56 KOG2982 Uncharacterized conser 96.5 0.002 4.4E-08 57.2 3.1 20 202-221 246-265 (418)
57 KOG2123 Uncharacterized conser 96.4 0.00011 2.4E-09 64.3 -5.2 104 4-126 18-123 (388)
58 KOG1859 Leucine-rich repeat pr 96.1 0.00021 4.5E-09 70.4 -5.9 105 4-131 186-290 (1096)
59 KOG0531 Protein phosphatase 1, 96.0 0.0029 6.3E-08 61.0 1.4 82 29-130 91-172 (414)
60 KOG1644 U2-associated snRNP A' 95.6 0.032 7E-07 47.0 5.7 83 33-131 42-124 (233)
61 KOG0531 Protein phosphatase 1, 95.4 0.0052 1.1E-07 59.2 0.7 104 3-130 93-196 (414)
62 KOG2123 Uncharacterized conser 95.4 0.0016 3.5E-08 57.2 -2.6 85 31-133 17-101 (388)
63 KOG3864 Uncharacterized conser 95.2 0.0031 6.8E-08 52.9 -1.3 40 91-132 149-188 (221)
64 KOG3864 Uncharacterized conser 94.7 0.0033 7.2E-08 52.7 -2.5 37 286-323 150-186 (221)
65 KOG2739 Leucine-rich acidic nu 94.4 0.018 4E-07 50.3 1.3 35 205-240 91-127 (260)
66 KOG2739 Leucine-rich acidic nu 93.6 0.031 6.8E-07 48.9 1.2 112 4-133 42-156 (260)
67 PF13504 LRR_7: Leucine rich r 91.8 0.14 2.9E-06 24.8 1.6 17 313-330 1-17 (17)
68 PF00560 LRR_1: Leucine Rich R 91.7 0.11 2.4E-06 27.0 1.3 19 314-333 1-19 (22)
69 PF13306 LRR_5: Leucine rich r 89.7 2.7 5.8E-05 32.6 8.4 36 30-68 9-44 (129)
70 KOG4579 Leucine-rich repeat (L 89.4 0.052 1.1E-06 42.9 -1.7 83 34-131 28-111 (177)
71 KOG4579 Leucine-rich repeat (L 87.6 0.039 8.5E-07 43.6 -3.5 84 29-129 49-132 (177)
72 COG5238 RNA1 Ran GTPase-activa 86.4 0.15 3.4E-06 45.0 -0.8 93 4-104 29-131 (388)
73 smart00367 LRR_CC Leucine-rich 85.4 0.46 1E-05 25.7 1.0 16 287-302 2-17 (26)
74 PF13306 LRR_5: Leucine rich r 82.1 5 0.00011 31.0 6.2 105 1-129 8-112 (129)
75 COG5238 RNA1 Ran GTPase-activa 79.4 0.78 1.7E-05 40.8 0.7 39 30-69 89-130 (388)
76 smart00369 LRR_TYP Leucine-ric 78.0 1.4 3E-05 23.7 1.2 18 59-77 2-19 (26)
77 smart00370 LRR Leucine-rich re 78.0 1.4 3E-05 23.7 1.2 18 59-77 2-19 (26)
78 PF13516 LRR_6: Leucine Rich r 62.2 3.8 8.1E-05 21.4 0.7 11 59-69 2-12 (24)
79 smart00365 LRR_SD22 Leucine-ri 53.6 12 0.00026 20.3 1.7 16 59-75 2-17 (26)
80 smart00364 LRR_BAC Leucine-ric 41.9 14 0.00031 20.0 0.9 16 60-76 3-18 (26)
81 KOG3763 mRNA export factor TAP 35.6 18 0.00039 35.6 1.1 87 31-126 216-307 (585)
82 smart00368 LRR_RI Leucine rich 33.0 28 0.0006 19.0 1.2 10 34-43 3-12 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.4e-22 Score=211.54 Aligned_cols=288 Identities=20% Similarity=0.337 Sum_probs=177.1
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+.+|++|++.++ .++.+|.+ +..+++|++|++++|.+++.+|. +..+++|++|++.+|..+..+|....
T Consensus 610 ~~~L~~L~L~~s-~l~~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~--- 678 (1153)
T PLN03210 610 PENLVKLQMQGS-KLEKLWDG----VHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQ--- 678 (1153)
T ss_pred ccCCcEEECcCc-cccccccc----cccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhh---
Confidence 356777787777 57777543 46788888888888877776654 35778888888888877777665432
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFF 161 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~ 161 (384)
.+++|+.|++.+|..++.+|. .+ .+++|+.|++++|..++.+| ..+|++|.++++....++...
T Consensus 679 -------~L~~L~~L~L~~c~~L~~Lp~---~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~--- 744 (1153)
T PLN03210 679 -------YLNKLEDLDMSRCENLEILPT---GI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL--- 744 (1153)
T ss_pred -------ccCCCCEEeCCCCCCcCccCC---cC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc---
Confidence 677888888888888888876 22 67888888888888877776 356788888766543333211
Q ss_pred ccCCcccccCCccccCCccEEeccccccccccccccc--c--cccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694 162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND--E--SNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 237 (384)
Q Consensus 162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~--~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 237 (384)
.+++|++|.+.++... .++.... . ....+++|+.|++++|+.+..+|..+..+++|+.|+++
T Consensus 745 -------------~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 745 -------------RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred -------------cccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence 2455555555543211 1111000 0 01234566677777666666666666666777777777
Q ss_pred cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694 238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 317 (384)
Q Consensus 238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~ 317 (384)
+|+.++.++.. . .+++|+.|++++|..+..++.. .++|+.|++.+ ..++.++. ....+++|++
T Consensus 811 ~C~~L~~LP~~--~-~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~ 873 (1153)
T PLN03210 811 NCINLETLPTG--I-NLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSR-TGIEEVPW--WIEKFSNLSF 873 (1153)
T ss_pred CCCCcCeeCCC--C-CccccCEEECCCCCcccccccc-----------ccccCEeECCC-CCCccChH--HHhcCCCCCE
Confidence 76666665321 1 4566677777766665544332 34555555554 24444433 2344556666
Q ss_pred EEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 318 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 318 L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
|++++|++++.+|..+..+++|+.+++++|
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCC
Confidence 666666666555555555555555555555
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=8.3e-21 Score=201.30 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=26.8
Q ss_pred cccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694 202 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 264 (384)
Q Consensus 202 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 264 (384)
..+++|+.|+++++.....+|..+..+++|++|++++|.-...+ +..+..+++|+.|++++
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI--PELVIQLQNLEILHLFS 317 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC--ChhHcCCCCCcEEECCC
Confidence 34445555555554333334444444555555555544311111 22333444555555544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=6e-20 Score=195.94 Aligned_cols=276 Identities=24% Similarity=0.362 Sum_probs=202.3
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|+.|+++++..+..+ | .++.+++|++|++.+|..+..+|.. ++++++|++|++++|..++.+|...
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~i----p-~ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~i-- 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEI----P-DLSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGI-- 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcC----C-ccccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCcC--
Confidence 46789999999998777765 5 3688999999999999888887554 6799999999999998888887544
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEEecCCCCcccccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSE 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~ 157 (384)
.+++|++|++++|..++.+|. ..++|+.|++.++. ++.+| +++|++|.+.......+...
T Consensus 702 ---------~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 702 ---------NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred ---------CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-cccccccccccccccccccccchhhcccc
Confidence 678999999999988887775 24678999998854 55555 34567776655332211110
Q ss_pred ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694 158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 237 (384)
Q Consensus 158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 237 (384)
+. .+... ....+++|+.|++++++.+..++.. ...+++|+.|++++|..++.+|... .+++|+.|+++
T Consensus 766 ~~-----~l~~~--~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 766 VQ-----PLTPL--MTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cc-----ccchh--hhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 00 00000 0113578899999988777766443 4678899999999998888887665 68889999999
Q ss_pred cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694 238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 317 (384)
Q Consensus 238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~ 317 (384)
+|..+..++ . ...+|++|++.+ ..++.++.. ...+++|+.|++.+|++|+.++.. ...+++|+.
T Consensus 834 ~c~~L~~~p--~---~~~nL~~L~Ls~-n~i~~iP~s--------i~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~ 897 (1153)
T PLN03210 834 GCSRLRTFP--D---ISTNISDLNLSR-TGIEEVPWW--------IEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLET 897 (1153)
T ss_pred CCCcccccc--c---cccccCEeECCC-CCCccChHH--------HhcCCCCCEEECCCCCCcCccCcc--cccccCCCe
Confidence 998777652 2 236788888887 445555432 233888999999999998887663 567888899
Q ss_pred EEeccCCCCCccC
Q 016694 318 VVVRQCPTMKIFS 330 (384)
Q Consensus 318 L~l~~c~~l~~lp 330 (384)
+++++|..++.++
T Consensus 898 L~l~~C~~L~~~~ 910 (1153)
T PLN03210 898 VDFSDCGALTEAS 910 (1153)
T ss_pred eecCCCccccccc
Confidence 9999998887554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.1e-20 Score=196.05 Aligned_cols=236 Identities=15% Similarity=0.095 Sum_probs=124.7
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++.....+ |. +.+++|++|++++| .+.+..|.. ++.+++|++|++++| .+....+....
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~----p~--~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~- 185 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSI----PR--GSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLT- 185 (968)
T ss_pred cCCCCCEEECcCCcccccc----Cc--cccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccC-cccccCChhhh-
Confidence 5678888888888433333 32 46778888888877 444443433 467788888888877 44433222211
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc-ccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-LTS 156 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~-~~~ 156 (384)
.+++|++|+++++.....+|. ....+++|+.|+++++......| .++|++|+++++.... .+.
T Consensus 186 --------~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 186 --------NLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred --------hCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 566777777776664444444 45566677777776654332333 3456666666554321 111
Q ss_pred cc---------cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCccc
Q 016694 157 EE---------NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 227 (384)
Q Consensus 157 ~~---------~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 227 (384)
.+ .+..+.-...++...+.+++|++|+++++.-...++.. ...+++|+.|+++++.....+|..+..
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL----VIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh----HcCCCCCcEEECCCCccCCcCChhHhc
Confidence 00 00001000111222334566666666655221121110 234566666666665544455555566
Q ss_pred CCCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694 228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 265 (384)
Q Consensus 228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 265 (384)
+++|+.|++++|.-...+ +..+..+++|+.|+++++
T Consensus 331 l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred CCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCC
Confidence 666666666665422222 333455566666666654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=4.7e-19 Score=166.90 Aligned_cols=292 Identities=15% Similarity=0.143 Sum_probs=164.2
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
++.||.+.+.++ +++.. +.|+.|..+..|.+|+|+.+ +++..|.. ...-+++-.|++++| +|+.+|...+.
T Consensus 77 Lp~LRsv~~R~N-~LKns--GiP~diF~l~dLt~lDLShN-qL~EvP~~--LE~AKn~iVLNLS~N-~IetIPn~lfi-- 147 (1255)
T KOG0444|consen 77 LPRLRSVIVRDN-NLKNS--GIPTDIFRLKDLTILDLSHN-QLREVPTN--LEYAKNSIVLNLSYN-NIETIPNSLFI-- 147 (1255)
T ss_pred chhhHHHhhhcc-ccccC--CCCchhcccccceeeecchh-hhhhcchh--hhhhcCcEEEEcccC-ccccCCchHHH--
Confidence 444444444444 33321 12555555555555555555 45544322 234455555555555 55555443332
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC----ccccc-CCCeeEEEecCCCCccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD----METFI-SNSVVHVTTDNKEPEKLTSEE 158 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~----l~~~~-~~~L~~L~i~~~~~~~~~~~~ 158 (384)
.+.-|-.|+++++. ++.+|+ .+..+.+|+.|.+++.|- +..+| +++|..|+++++.-
T Consensus 148 -------nLtDLLfLDLS~Nr-Le~LPP---Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR------- 209 (1255)
T KOG0444|consen 148 -------NLTDLLFLDLSNNR-LEMLPP---QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR------- 209 (1255)
T ss_pred -------hhHhHhhhccccch-hhhcCH---HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc-------
Confidence 33444455555444 555555 445555566666665442 22332 33444444444321
Q ss_pred cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694 159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 238 (384)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 238 (384)
.+..++.++..+.+|+.+|++.+ ++..++.. ...+.+|+.|+++++ .++.+....+...+|+.|+++.
T Consensus 210 ------Tl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec----ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 210 ------TLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC----LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred ------hhhcCCCchhhhhhhhhcccccc-CCCcchHH----HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc
Confidence 22233344445667777777665 55554433 346677777777774 5666655556666777777776
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV 318 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L 318 (384)
. .++.+ |+-...+++|++|.+.+ ++++ -.|++..+-.+.+|+.+...+ .+|+-++. .+.+|+.|++|
T Consensus 278 N-QLt~L--P~avcKL~kL~kLy~n~-NkL~------FeGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL 344 (1255)
T KOG0444|consen 278 N-QLTVL--PDAVCKLTKLTKLYANN-NKLT------FEGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKL 344 (1255)
T ss_pred c-hhccc--hHHHhhhHHHHHHHhcc-Cccc------ccCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHh
Confidence 4 46665 44556677777777765 3332 223333333466666666655 45666554 36778888998
Q ss_pred EeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 319 VVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 319 ~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
.++++ .+-++|+++.-++.|+++++.+|+
T Consensus 345 ~L~~N-rLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 345 KLDHN-RLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccccc-ceeechhhhhhcCCcceeeccCCc
Confidence 88554 566888888778889999988875
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=2.3e-16 Score=147.79 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=155.2
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
-.+++|+.+++..+ .++.| |.-.+...+|+.|+|..| .+.++.... ...++.|+.||++.| .+.+++...+-
T Consensus 99 ~nl~nLq~v~l~~N-~Lt~I----P~f~~~sghl~~L~L~~N-~I~sv~se~-L~~l~alrslDLSrN-~is~i~~~sfp 170 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKN-ELTRI----PRFGHESGHLEKLDLRHN-LISSVTSEE-LSALPALRSLDLSRN-LISEIPKPSFP 170 (873)
T ss_pred hcCCcceeeeeccc-hhhhc----ccccccccceeEEeeecc-ccccccHHH-HHhHhhhhhhhhhhc-hhhcccCCCCC
Confidence 46789999999988 67777 765455677999999887 556653333 457788888888888 77766543321
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT 155 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~ 155 (384)
.-+++++|++.++. ++.+.. .....+.+|..|.+++ ++++.+| ++.|+.|++..+.+.+.-
T Consensus 171 ---------~~~ni~~L~La~N~-It~l~~--~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 171 ---------AKVNIKKLNLASNR-ITTLET--GHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred ---------CCCCceEEeecccc-cccccc--ccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 23457777776665 444432 1233444566666655 3444444 233444444443322110
Q ss_pred ccccccccC----------Ccc----cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc
Q 016694 156 SEENFFLTD----------QIQ----PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL 221 (384)
Q Consensus 156 ~~~~~~~~~----------~l~----~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l 221 (384)
+..+-+.. .+. +.|. .+.+++.|+++.+ ++..+..++ ...+++|+.|+++++ .+..+
T Consensus 238 -~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy---~l~kme~l~L~~N-~l~~vn~g~---lfgLt~L~~L~lS~N-aI~ri 308 (873)
T KOG4194|consen 238 -GLTFQGLPSLQNLKLQRNDISKLDDGAFY---GLEKMEHLNLETN-RLQAVNEGW---LFGLTSLEQLDLSYN-AIQRI 308 (873)
T ss_pred -hhhhcCchhhhhhhhhhcCcccccCccee---eecccceeecccc-hhhhhhccc---ccccchhhhhccchh-hhhee
Confidence 00000000 000 0111 3455555555543 333332221 123445555555542 23333
Q ss_pred cCC-cccCCCcCEEEeecCCCCeeecc-----------------------cccccccCcccEEeecccccccEecccccC
Q 016694 222 VTP-SWHLENLATLEVSKCHGLINVLT-----------------------LSTSESLVNLGRMKIADCKMIEQIIQLQVG 277 (384)
Q Consensus 222 ~~~-~~~~~~L~~L~l~~c~~l~~l~~-----------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 277 (384)
... +..+++|+.|++++. .++.+.. ...+..+.+|++|++.+ +.+. |... +.
T Consensus 309 h~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~-N~ls-~~IE-Da 384 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS-NELS-WCIE-DA 384 (873)
T ss_pred ecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC-CeEE-EEEe-cc
Confidence 222 223344555555542 2333321 12234455566666655 2232 2111 11
Q ss_pred ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
......++.|+.|.+.+ .+++.++..+ +.+++.||.|++.++...+.-|.++.++ .|+++.+...
T Consensus 385 --a~~f~gl~~LrkL~l~g-Nqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 385 --AVAFNGLPSLRKLRLTG-NQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred --hhhhccchhhhheeecC-ceeeecchhh-hccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 12233366677777666 4566665543 5566777777776665444444555544 6666666654
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=5.6e-16 Score=145.27 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=174.1
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
+.-+.|+++++ .+..+ . +..+-+++||+.+++.+| .++.+|-. ..-..+|+.|++..| .|.++.++...
T Consensus 78 ~~t~~LdlsnN-kl~~i-d--~~~f~nl~nLq~v~l~~N-~Lt~IP~f--~~~sghl~~L~L~~N-~I~sv~se~L~--- 146 (873)
T KOG4194|consen 78 SQTQTLDLSNN-KLSHI-D--FEFFYNLPNLQEVNLNKN-ELTRIPRF--GHESGHLEKLDLRHN-LISSVTSEELS--- 146 (873)
T ss_pred cceeeeecccc-ccccC-c--HHHHhcCCcceeeeeccc-hhhhcccc--cccccceeEEeeecc-ccccccHHHHH---
Confidence 44567999999 56653 2 444678999999999998 77877654 345577999999999 88888666643
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEE 158 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~ 158 (384)
.++.|++|+++.+. +.+++. .....-.++++|+++.. +++.+. +.+|..|.++.+....++...
T Consensus 147 ------~l~alrslDLSrN~-is~i~~--~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~ 216 (873)
T KOG4194|consen 147 ------ALPALRSLDLSRNL-ISEIPK--PSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRS 216 (873)
T ss_pred ------hHhhhhhhhhhhch-hhcccC--CCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHH
Confidence 78999999999876 666664 12222357999999984 555443 345778888877655444211
Q ss_pred cc-------cc--cCCcccc-cCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCccc
Q 016694 159 NF-------FL--TDQIQPL-FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWH 227 (384)
Q Consensus 159 ~~-------~~--~~~l~~l-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~ 227 (384)
.- .+ ...++.+ +-.+..+++|+.|.+..+ ++..+-.+. ...+.++++|++..+ .+..+. .++..
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~---Fy~l~kme~l~L~~N-~l~~vn~g~lfg 291 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGA---FYGLEKMEHLNLETN-RLQAVNEGWLFG 291 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcc---eeeecccceeecccc-hhhhhhcccccc
Confidence 00 00 0000000 001113344444443332 111111111 144566777777653 344432 23456
Q ss_pred CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCc-----------------cccceeeecccc
Q 016694 228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE-----------------EAKGCVVFEELG 290 (384)
Q Consensus 228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~-----------------~~~~~~~~~~L~ 290 (384)
+..|+.|++++. .+..+-...| ...++|++|+++. +.+++.....-.+ ......++.+|+
T Consensus 292 Lt~L~~L~lS~N-aI~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 292 LTSLEQLDLSYN-AIQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred cchhhhhccchh-hhheeecchh-hhcccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 777788888774 3555433333 3456777777776 3454443210000 011222344444
Q ss_pred eeecccCCCCceec--CCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeeccCCC
Q 016694 291 YLGLDCLPSLTSFC--LGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 347 (384)
Q Consensus 291 ~L~l~~c~~L~~l~--~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i~~~ 347 (384)
+|++++.. +...- ....+..+++|++|.+.++ +++.+|.. +.+++.|+.+++.+|
T Consensus 369 ~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 369 KLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhcCcCCe-EEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCC
Confidence 44444321 11000 0012334777777777665 66777643 345777777777776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=1.8e-16 Score=149.74 Aligned_cols=272 Identities=22% Similarity=0.260 Sum_probs=197.5
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+..|..|+++++ .+.++ |..+..-+|+-+|+|+.+ ++..+ |.+++-++..|-.||+++| .++.+|+...
T Consensus 102 l~dLt~lDLShN-qL~Ev----P~~LE~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~N-rLe~LPPQ~R--- 170 (1255)
T KOG0444|consen 102 LKDLTILDLSHN-QLREV----PTNLEYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNN-RLEMLPPQIR--- 170 (1255)
T ss_pred cccceeeecchh-hhhhc----chhhhhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccc-hhhhcCHHHH---
Confidence 567889999999 67777 888888899999999997 77777 5555669999999999999 9999998774
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC-ccccc-----CCCeeEEEecCCCCcccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD-METFI-----SNSVVHVTTDNKEPEKLTSE 157 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~-----~~~L~~L~i~~~~~~~~~~~ 157 (384)
.+..|++|.+++++ +..+.. ...-.+++|++|.+++..+ +..+| +.+|+.++++.++
T Consensus 171 -------RL~~LqtL~Ls~NP-L~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------- 233 (1255)
T KOG0444|consen 171 -------RLSMLQTLKLSNNP-LNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------- 233 (1255)
T ss_pred -------HHhhhhhhhcCCCh-hhHHHH--hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-------
Confidence 78899999999988 544433 1223355677777777554 33444 3467777776544
Q ss_pred ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEee
Q 016694 158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 237 (384)
Q Consensus 158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 237 (384)
+..++...-++++|+.|+++++ .++.+... .....+|+.|+++.+ .++.+|..+..+++|+.|.+.
T Consensus 234 --------Lp~vPecly~l~~LrrLNLS~N-~iteL~~~----~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 234 --------LPIVPECLYKLRNLRRLNLSGN-KITELNMT----EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred --------CCcchHHHhhhhhhheeccCcC-ceeeeecc----HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhc
Confidence 3333333336889999999987 45554222 255678999999874 688999999999999999887
Q ss_pred cCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccE
Q 016694 238 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 317 (384)
Q Consensus 238 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~ 317 (384)
+. +++.-..|+.++.+.+|+.++.++ +.++-++. ....++.|+.|.+.. ..|-.++. ...-++-|+.
T Consensus 300 ~N-kL~FeGiPSGIGKL~~Levf~aan-N~LElVPE--------glcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~v 366 (1255)
T KOG0444|consen 300 NN-KLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPE--------GLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKV 366 (1255)
T ss_pred cC-cccccCCccchhhhhhhHHHHhhc-cccccCch--------hhhhhHHHHHhcccc-cceeechh--hhhhcCCcce
Confidence 74 576666677788888889888886 45654432 233478888888854 55555554 2445788888
Q ss_pred EEeccCCCCCccC
Q 016694 318 VVVRQCPTMKIFS 330 (384)
Q Consensus 318 L~l~~c~~l~~lp 330 (384)
|+++.++++-.=|
T Consensus 367 LDlreNpnLVMPP 379 (1255)
T KOG0444|consen 367 LDLRENPNLVMPP 379 (1255)
T ss_pred eeccCCcCccCCC
Confidence 9988888774433
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=9.5e-14 Score=139.63 Aligned_cols=252 Identities=19% Similarity=0.154 Sum_probs=174.8
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
.-..|+++++ .+..+ |+.+. .+|+.|++.+| +++.+|. ..++|++|++++| .++.+|.
T Consensus 202 ~~~~LdLs~~-~LtsL----P~~l~--~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~-------- 259 (788)
T PRK15387 202 GNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-------- 259 (788)
T ss_pred CCcEEEcCCC-CCCcC----Ccchh--cCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcccC--------
Confidence 3567888888 67666 77654 58999999987 7887753 3589999999998 8887763
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
..++|++|++.++. +..++. ..++|+.|++.++ .++.+| +++|++|+++.+.+..++
T Consensus 260 -----lp~sL~~L~Ls~N~-L~~Lp~------lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp-------- 318 (788)
T PRK15387 260 -----LPPGLLELSIFSNP-LTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP-------- 318 (788)
T ss_pred -----cccccceeeccCCc-hhhhhh------chhhcCEEECcCC-ccccccccccccceeECCCCccccCC--------
Confidence 34688899998876 666654 2357888888885 566665 467888888775532211
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 243 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 243 (384)
. ...+|+.|+++++ .+..++. ...+|+.|+++++ .++.+|.. .++|+.|+++++ .+.
T Consensus 319 -------~---lp~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~ 375 (788)
T PRK15387 319 -------A---LPSELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLT 375 (788)
T ss_pred -------C---CcccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccc
Confidence 1 1335777777765 4544321 2357889999874 57777653 356778888775 455
Q ss_pred eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694 244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 323 (384)
Q Consensus 244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c 323 (384)
.++ . ..++|+.|+++++ .+..++.. +++|+.|+++++ .++.++. ...+|+.|+++++
T Consensus 376 ~LP--~---l~~~L~~LdLs~N-~Lt~LP~l-----------~s~L~~LdLS~N-~LssIP~-----l~~~L~~L~Ls~N 432 (788)
T PRK15387 376 SLP--A---LPSGLKELIVSGN-RLTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN 432 (788)
T ss_pred cCc--c---cccccceEEecCC-cccCCCCc-----------ccCCCEEEccCC-cCCCCCc-----chhhhhhhhhccC
Confidence 542 2 2357888999874 46655433 568899999885 4666543 2357888888876
Q ss_pred CCCCccCCCCcCCCCCeeeccCCC
Q 016694 324 PTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 324 ~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
+++.+|..+..+++|+.+++++|
T Consensus 433 -qLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 433 -QLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred -cccccChHHhhccCCCeEECCCC
Confidence 57889988888889999999988
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=1.6e-16 Score=142.75 Aligned_cols=303 Identities=15% Similarity=0.109 Sum_probs=189.5
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
+++.|++|+...+ .++.+ |+.++.+.+|..||+.++ ++..+|. +.+|..|++|+++.+ .++.++++...
T Consensus 181 ~m~~L~~ld~~~N-~L~tl----P~~lg~l~~L~~LyL~~N-ki~~lPe---f~gcs~L~Elh~g~N-~i~~lpae~~~- 249 (565)
T KOG0472|consen 181 AMKRLKHLDCNSN-LLETL----PPELGGLESLELLYLRRN-KIRFLPE---FPGCSLLKELHVGEN-QIEMLPAEHLK- 249 (565)
T ss_pred HHHHHHhcccchh-hhhcC----ChhhcchhhhHHHHhhhc-ccccCCC---CCccHHHHHHHhccc-HHHhhHHHHhc-
Confidence 3556777776666 56666 777888888888888887 5666642 467777777777777 67777665532
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC--C--CeeEEEecCCCCccccc--
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS--N--SVVHVTTDNKEPEKLTS-- 156 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--~--~L~~L~i~~~~~~~~~~-- 156 (384)
.++++..|++.++. ++++|. .+..+.+|.+|++++ ..++.+|+ + .|+.|.+.|+++...-+
T Consensus 250 --------~L~~l~vLDLRdNk-lke~Pd---e~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 250 --------HLNSLLVLDLRDNK-LKEVPD---EICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNPLRTIRREI 316 (565)
T ss_pred --------ccccceeeeccccc-cccCch---HHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCchHHHHHHH
Confidence 67788888888776 777777 667777888888887 45666653 2 35566666655432210
Q ss_pred --cc---------cccccC--------------CcccccCCccccCCccEEecccccccccccccccccccccccccEEe
Q 016694 157 --EE---------NFFLTD--------------QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLK 211 (384)
Q Consensus 157 --~~---------~~~~~~--------------~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~ 211 (384)
+. ..+.|+ .....|+....+.+.+.|+++.- ++..++.+-|.. +.-.-....+
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea-~~~~~Vt~Vn 394 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEA-AKSEIVTSVN 394 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHH-hhhcceEEEe
Confidence 00 001111 12223333335567777777664 333332221100 0000112222
Q ss_pred ec-----------------------cCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694 212 IS-----------------------ECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 268 (384)
Q Consensus 212 l~-----------------------~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 268 (384)
++ ....+..+|..+..+++|..|++++. -+.++ |.-.+++..|+.|+++.+ .+
T Consensus 395 fskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~L--P~e~~~lv~Lq~LnlS~N-rF 470 (565)
T KOG0472|consen 395 FSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDL--PEEMGSLVRLQTLNLSFN-RF 470 (565)
T ss_pred cccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhc--chhhhhhhhhheeccccc-cc
Confidence 22 22345566667788999999999985 36677 444567788999999874 55
Q ss_pred cEecccccCccccceeeecccceeec--ccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCC
Q 016694 269 EQIIQLQVGEEAKGCVVFEELGYLGL--DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 346 (384)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~L~l--~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~ 346 (384)
...+.. +-.++.+++ ..-..+..++.. ...++.+|..|++.++ .+..+|.+++++++|+.+.+++
T Consensus 471 r~lP~~-----------~y~lq~lEtllas~nqi~~vd~~-~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 471 RMLPEC-----------LYELQTLETLLASNNQIGSVDPS-GLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred ccchHH-----------HhhHHHHHHHHhccccccccChH-HhhhhhhcceeccCCC-chhhCChhhccccceeEEEecC
Confidence 544433 333333332 233456666654 2678999999999775 6889999999999999999999
Q ss_pred CC
Q 016694 347 EE 348 (384)
Q Consensus 347 ~~ 348 (384)
++
T Consensus 538 Np 539 (565)
T KOG0472|consen 538 NP 539 (565)
T ss_pred Cc
Confidence 94
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=3.6e-12 Score=128.41 Aligned_cols=235 Identities=18% Similarity=0.111 Sum_probs=166.7
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|+.|++.++ .++.+ |. ..++|++|++++| +++.+|.. .++|++|++.+| .+..++.
T Consensus 222 ~~L~~L~L~~N-~Lt~L----P~---lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~L~~Lp~------- 279 (788)
T PRK15387 222 AHITTLVIPDN-NLTSL----PA---LPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-PLTHLPA------- 279 (788)
T ss_pred cCCCEEEccCC-cCCCC----CC---CCCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-chhhhhh-------
Confidence 46899999998 67766 53 3589999999998 88887532 378999999999 7777654
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
...+|+.|++.++. ++.+|. ..++|+.|+++++ .++.+| +..|+.|.+.++.+..
T Consensus 280 ------lp~~L~~L~Ls~N~-Lt~LP~------~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~--------- 336 (788)
T PRK15387 280 ------LPSGLCKLWIFGNQ-LTSLPV------LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS--------- 336 (788)
T ss_pred ------chhhcCEEECcCCc-cccccc------cccccceeECCCC-ccccCCCCcccccccccccCcccc---------
Confidence 33578889998875 676765 3578999999985 566554 3467777777654321
Q ss_pred cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCC
Q 016694 163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 242 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 242 (384)
+.. ...+|+.|+++++ ++..++. ..++|+.|+++++ .+..+|.. ..+|+.|+++++ .+
T Consensus 337 ------LP~---lp~~Lq~LdLS~N-~Ls~LP~-------lp~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N-~L 394 (788)
T PRK15387 337 ------LPT---LPSGLQELSVSDN-QLASLPT-------LPSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RL 394 (788)
T ss_pred ------ccc---cccccceEecCCC-ccCCCCC-------CCcccceehhhcc-ccccCccc---ccccceEEecCC-cc
Confidence 111 2347899999886 5665532 2357888888874 56777643 357899999986 46
Q ss_pred eeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694 243 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322 (384)
Q Consensus 243 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~ 322 (384)
+.++ . ..++|+.|+++++ .+..++.. +.+|+.|++++ .+++.++. .+..+++|+.|++++
T Consensus 395 t~LP--~---l~s~L~~LdLS~N-~LssIP~l-----------~~~L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 395 TSLP--V---LPSELKELMVSGN-RLTSLPML-----------PSGLLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEG 454 (788)
T ss_pred cCCC--C---cccCCCEEEccCC-cCCCCCcc-----------hhhhhhhhhcc-CcccccCh--HHhhccCCCeEECCC
Confidence 6552 2 2367899999985 46665543 56788899877 45777654 366789999999999
Q ss_pred CCCC
Q 016694 323 CPTM 326 (384)
Q Consensus 323 c~~l 326 (384)
++.-
T Consensus 455 N~Ls 458 (788)
T PRK15387 455 NPLS 458 (788)
T ss_pred CCCC
Confidence 8643
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.38 E-value=3.1e-15 Score=135.28 Aligned_cols=308 Identities=18% Similarity=0.193 Sum_probs=188.0
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
..||.|.+.++..+..--... -...++|++.|.+.+|.++++....++...|++|++|++.+|..++...-.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk------ 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK------ 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH------
Confidence 358889999987665421111 124789999999999999998877888889999999999999777644211
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC-------CCeeEEEecCCCCcccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHVTTDNKEPEKLTSE 157 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L~i~~~~~~~~~~~ 157 (384)
.+...+++|++++++.|+.+..=.. ......+..++.+..++|...+.-.+ ..+.++++..
T Consensus 210 --~la~gC~kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~--------- 277 (483)
T KOG4341|consen 210 --YLAEGCRKLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH--------- 277 (483)
T ss_pred --HHHHhhhhHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh---------
Confidence 1112789999999999986654111 12233455677776677755432110 0122222222
Q ss_pred ccccccCCccc--ccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc--CCcccCCCcCE
Q 016694 158 ENFFLTDQIQP--LFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLAT 233 (384)
Q Consensus 158 ~~~~~~~~l~~--l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~ 233 (384)
|..+.+ ++..-..+..|+.|+.++|.++.+...... .+.+.+|+.|.+..|..++..- .-...++.|+.
T Consensus 278 -----c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 278 -----CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER 350 (483)
T ss_pred -----hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence 111111 001011466777788777776655433211 2456788888888877655431 11235677888
Q ss_pred EEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcc---ccceeeecccceeecccCCCCceecCCCccc
Q 016694 234 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEE---AKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 310 (384)
Q Consensus 234 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 310 (384)
+++..|....+......+.+++.|+.+.+++|..+++ .|+ .........|+.+++++||.+++-... ...
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD------~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~ 423 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD------EGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLS 423 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhh------hhhhhhhhccccccccceeeecCCCCchHHHHH-HHh
Confidence 8888876665543444556778888888888876652 221 112234667888888888877665442 355
Q ss_pred CCCCccEEEeccCCCCCccCCC--CcCCCCCeeeccCC
Q 016694 311 EFPSLEHVVVRQCPTMKIFSQG--VVDAPKLNKVKPTE 346 (384)
Q Consensus 311 ~~~~L~~L~l~~c~~l~~lp~~--~~~~~~L~~l~i~~ 346 (384)
.++.||.+++.+|..++.-+.. ..++|++++.....
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 6788888888888777654322 23566666655443
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=7.4e-14 Score=137.55 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=41.6
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceec
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL 76 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 76 (384)
+.+|+.|+++.+ .+.++ |.++.++.+|+++.|.++ .+... |.+ +..+++|++|+++++ .+...|
T Consensus 67 l~~L~~ln~s~n-~i~~v----p~s~~~~~~l~~lnL~~n-~l~~l-P~~-~~~lknl~~LdlS~N-~f~~~P 130 (1081)
T KOG0618|consen 67 LSHLRQLNLSRN-YIRSV----PSSCSNMRNLQYLNLKNN-RLQSL-PAS-ISELKNLQYLDLSFN-HFGPIP 130 (1081)
T ss_pred HHHHhhcccchh-hHhhC----chhhhhhhcchhheeccc-hhhcC-chh-HHhhhcccccccchh-ccCCCc
Confidence 345666666666 45555 666677788888888765 54555 333 467888888888887 554443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=5.6e-15 Score=132.95 Aligned_cols=262 Identities=20% Similarity=0.163 Sum_probs=178.8
Q ss_pred CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694 7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 86 (384)
|+.|.++++ .++.+ -+.+.++..|.++++.++ ++...|+. ++.+..++.++++.+ ++..+|.+.+
T Consensus 47 l~~lils~N-~l~~l----~~dl~nL~~l~vl~~~~n-~l~~lp~a--ig~l~~l~~l~vs~n-~ls~lp~~i~------ 111 (565)
T KOG0472|consen 47 LQKLILSHN-DLEVL----REDLKNLACLTVLNVHDN-KLSQLPAA--IGELEALKSLNVSHN-KLSELPEQIG------ 111 (565)
T ss_pred hhhhhhccC-chhhc----cHhhhcccceeEEEeccc-hhhhCCHH--HHHHHHHHHhhcccc-hHhhccHHHh------
Confidence 445556665 34443 334566777777777776 66666555 667777777777777 6777766554
Q ss_pred ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCc
Q 016694 87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQI 166 (384)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l 166 (384)
..++|..++.+... +.+++. .++.+..|..++-.+. .+
T Consensus 112 ----s~~~l~~l~~s~n~-~~el~~---~i~~~~~l~dl~~~~N----------------------------------~i 149 (565)
T KOG0472|consen 112 ----SLISLVKLDCSSNE-LKELPD---SIGRLLDLEDLDATNN----------------------------------QI 149 (565)
T ss_pred ----hhhhhhhhhccccc-eeecCc---hHHHHhhhhhhhcccc----------------------------------cc
Confidence 56667777776665 444544 4455555555544442 22
Q ss_pred ccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeec
Q 016694 167 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 246 (384)
Q Consensus 167 ~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 246 (384)
..+++..+.+.+|..+++.+. .+..++.. ..++..|++|+... +.++++|+.++.+.+|..|++... ++..+
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n-~l~~l~~~----~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~l- 221 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGN-KLKALPEN----HIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFL- 221 (565)
T ss_pred ccCchHHHHHHHHHHhhcccc-chhhCCHH----HHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccC-
Confidence 223333335667777777776 44444332 24588899988866 368999999999999999999885 56666
Q ss_pred ccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC
Q 016694 247 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM 326 (384)
Q Consensus 247 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l 326 (384)
| .+.++..|++|+++. +.++-+++. -..-++++..|++++ .++++++.+ ..-+++|++|+++++ .+
T Consensus 222 -P-ef~gcs~L~Elh~g~-N~i~~lpae-------~~~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~i 287 (565)
T KOG0472|consen 222 -P-EFPGCSLLKELHVGE-NQIEMLPAE-------HLKHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DI 287 (565)
T ss_pred -C-CCCccHHHHHHHhcc-cHHHhhHHH-------Hhcccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-cc
Confidence 3 356788899999987 556655443 111378888999988 588888764 556889999999886 68
Q ss_pred CccCCCCcCCCCCeeeccCCCC
Q 016694 327 KIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 327 ~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
+.+|...+++ .|+.+.+++++
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccCCcccccc-eeeehhhcCCc
Confidence 8999998877 89999999984
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.31 E-value=2.8e-14 Score=129.19 Aligned_cols=302 Identities=15% Similarity=0.178 Sum_probs=205.4
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.-||.|.+++|......+...+...++++++|.+.+|..+++.- +..+...+++|++|++..|..+++...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--------~~sla~~C~~l~~l~L~~c~~iT~~~L- 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--------LLSLARYCRKLRHLNLHSCSSITDVSL- 208 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--------HHHHHHhcchhhhhhhcccchhHHHHH-
Confidence 36899999999888877777778899999999999996554321 111123789999999999998888765
Q ss_pred cccccCCCCceeEeeccCCCcccccCC-------CeeEEEecCCCCccccccccccccCCcc--cccCCccccCCccEEe
Q 016694 113 TENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSEENFFLTDQIQ--PLFDEKVAFPQLRYLE 183 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~L~~L~i~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~L~~L~ 183 (384)
......|++|+++++++|+.++.-... .++.+... +|.... .+....+.++-+.+++
T Consensus 209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k--------------GC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK--------------GCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc--------------ccccccHHHHHHHhccChHhhccc
Confidence 445667999999999999988752111 11112111 232221 1111122456677778
Q ss_pred cccccccccccccccccccccccccEEeeccCcccccccC--CcccCCCcCEEEeecCCCCeeecccccccccCcccEEe
Q 016694 184 LSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMK 261 (384)
Q Consensus 184 l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 261 (384)
+..|..+++..... ....+..|+.|..++|..++..+. -..++++|+.+.+++|..+++........+.+.|+.++
T Consensus 275 l~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred hhhhccccchHHHH--HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 77886666532110 124578899999999988775432 23478999999999999988875556667889999999
Q ss_pred ecccccccEecccccCccccceeeecccceeecccCCCCceecCC---CcccCCCCccEEEeccCCCCCccCCC-CcCCC
Q 016694 262 IADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAP 337 (384)
Q Consensus 262 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~---~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~ 337 (384)
+.+|..+.+- ........+|.|+.|.++.|..+++-.+. ....++..|+.+++++|+.++.-..+ ....+
T Consensus 353 ~e~~~~~~d~------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 353 LEECGLITDG------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred ccccceehhh------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 9998755422 12335566999999999999888776331 12345788999999999987643222 23477
Q ss_pred CCeeeccCCCCCCCCccccCCchHHHHHHHHhhcccc
Q 016694 338 KLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSK 374 (384)
Q Consensus 338 ~L~~l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 374 (384)
+|+.+++..+. +-..++|..+-...|+.
T Consensus 427 ~Leri~l~~~q---------~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 427 NLERIELIDCQ---------DVTKEAISRFATHLPNI 454 (483)
T ss_pred ccceeeeechh---------hhhhhhhHHHHhhCccc
Confidence 89988888771 11224566665555544
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=9.9e-12 Score=125.73 Aligned_cols=243 Identities=15% Similarity=0.161 Sum_probs=125.4
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
+...|+++++ .+..+ |..+ .++|+.|++++| +++.+|.. + ..+|++|++++| .++.++..
T Consensus 179 ~~~~L~L~~~-~LtsL----P~~I--p~~L~~L~Ls~N-~LtsLP~~-l---~~nL~~L~Ls~N-~LtsLP~~------- 238 (754)
T PRK15370 179 NKTELRLKIL-GLTTI----PACI--PEQITTLILDNN-ELKSLPEN-L---QGNIKTLYANSN-QLTSIPAT------- 238 (754)
T ss_pred CceEEEeCCC-CcCcC----Cccc--ccCCcEEEecCC-CCCcCChh-h---ccCCCEEECCCC-ccccCChh-------
Confidence 4567777776 55555 5443 247888888877 66766432 2 257888888887 67766431
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 165 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 165 (384)
..++|+.|+++++. ++.+|. .+ ..+|+.|+++++ .++.+|.
T Consensus 239 -----l~~~L~~L~Ls~N~-L~~LP~---~l--~s~L~~L~Ls~N-~L~~LP~--------------------------- 279 (754)
T PRK15370 239 -----LPDTIQEMELSINR-ITELPE---RL--PSALQSLDLFHN-KISCLPE--------------------------- 279 (754)
T ss_pred -----hhccccEEECcCCc-cCcCCh---hH--hCCCCEEECcCC-ccCcccc---------------------------
Confidence 23467788887776 556654 11 246777777653 4443331
Q ss_pred cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694 166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV 245 (384)
Q Consensus 166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 245 (384)
. -.++|+.|+++++ ++..++.. ..++|+.|+++++ .++.+|..+ .++|+.|++++|. ++.+
T Consensus 280 ------~--l~~sL~~L~Ls~N-~Lt~LP~~------lp~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~L 340 (754)
T PRK15370 280 ------N--LPEELRYLSVYDN-SIRTLPAH------LPSGITHLNVQSN-SLTALPETL--PPGLKTLEAGENA-LTSL 340 (754)
T ss_pred ------c--cCCCCcEEECCCC-ccccCccc------chhhHHHHHhcCC-ccccCCccc--cccceeccccCCc-cccC
Confidence 0 1234555555554 34333211 1234555555553 344443322 2456666666553 4333
Q ss_pred cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694 246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 325 (384)
Q Consensus 246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 325 (384)
+ ... .++|+.|++++| .+..++.. ..++|+.|++++| +|+.++.. . .++|+.|++++| +
T Consensus 341 P--~~l--~~sL~~L~Ls~N-~L~~LP~~----------lp~~L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N-~ 399 (754)
T PRK15370 341 P--ASL--PPELQVLDVSKN-QITVLPET----------LPPTITTLDVSRN-ALTNLPEN--L--PAALQIMQASRN-N 399 (754)
T ss_pred C--hhh--cCcccEEECCCC-CCCcCChh----------hcCCcCEEECCCC-cCCCCCHh--H--HHHHHHHhhccC-C
Confidence 1 111 145666666654 23333211 1345666666654 34444321 1 134666666654 3
Q ss_pred CCccCCCCc----CCCCCeeeccCCC
Q 016694 326 MKIFSQGVV----DAPKLNKVKPTEE 347 (384)
Q Consensus 326 l~~lp~~~~----~~~~L~~l~i~~~ 347 (384)
+..+|..+. ..+++..+.+.+|
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeCC
Confidence 445554332 1355566666665
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=6.1e-11 Score=120.07 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|+.|+++++ .+..+ |..+ +.+|++|++++| +++.+|. .+ .++|++|++++| .+..+|...
T Consensus 199 ~~L~~L~Ls~N-~LtsL----P~~l--~~nL~~L~Ls~N-~LtsLP~-~l---~~~L~~L~Ls~N-~L~~LP~~l----- 260 (754)
T PRK15370 199 EQITTLILDNN-ELKSL----PENL--QGNIKTLYANSN-QLTSIPA-TL---PDTIQEMELSIN-RITELPERL----- 260 (754)
T ss_pred cCCcEEEecCC-CCCcC----Chhh--ccCCCEEECCCC-ccccCCh-hh---hccccEEECcCC-ccCcCChhH-----
Confidence 46899999999 67776 6543 469999999998 7887743 22 258999999999 787775422
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI 137 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 137 (384)
..+|+.|+++++. ++.+|. .+ .++|+.|++++| .++.+|
T Consensus 261 -------~s~L~~L~Ls~N~-L~~LP~---~l--~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 261 -------PSALQSLDLFHNK-ISCLPE---NL--PEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred -------hCCCCEEECcCCc-cCcccc---cc--CCCCcEEECCCC-ccccCc
Confidence 3579999998765 777765 22 358999999886 455443
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=1.8e-11 Score=125.75 Aligned_cols=284 Identities=20% Similarity=0.258 Sum_probs=158.6
Q ss_pred CCCCceEecCCCcC-cceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 4 FRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~-~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
++.|+.|-+.++.. +..+ ..+.+..++.|++|++++|..+..+|.. ++.|-+||+|+++++ .++.+|....
T Consensus 544 ~~~L~tLll~~n~~~l~~i---s~~ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t-~I~~LP~~l~-- 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI---SGEFFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDT-GISHLPSGLG-- 615 (889)
T ss_pred CCccceEEEeecchhhhhc---CHHHHhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCC-CccccchHHH--
Confidence 34566666666632 2222 0112456788888888887777777544 677888888888887 7777766543
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC-Cccccc---CCCeeEE---EecCCCCcccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI---SNSVVHV---TTDNKEPEKLT 155 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~---~~~L~~L---~i~~~~~~~~~ 155 (384)
.+.+|.+|++..+..+..++. ....+++|++|.+..-. ..+... ..+|++| .+......
T Consensus 616 --------~Lk~L~~Lnl~~~~~l~~~~~---i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--- 681 (889)
T KOG4658|consen 616 --------NLKKLIYLNLEVTGRLESIPG---ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--- 681 (889)
T ss_pred --------HHHhhheeccccccccccccc---hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH---
Confidence 667778888877776655533 44457788888776532 111111 1122222 22211100
Q ss_pred ccccccccCCcccccCCccccCCccEE----ecccccccccccccccccccccccccEEeeccCcccccccCC-----cc
Q 016694 156 SEENFFLTDQIQPLFDEKVAFPQLRYL----ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-----SW 226 (384)
Q Consensus 156 ~~~~~~~~~~l~~l~~~~~~~~~L~~L----~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~~ 226 (384)
.+.++ ..++.|.++ .+.++ ..... ......+.+|+.|.+.+|...+..... ..
T Consensus 682 ---------~~e~l----~~~~~L~~~~~~l~~~~~-~~~~~----~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~ 743 (889)
T KOG4658|consen 682 ---------LLEDL----LGMTRLRSLLQSLSIEGC-SKRTL----ISSLGSLGNLEELSILDCGISEIVIEWEESLIVL 743 (889)
T ss_pred ---------hHhhh----hhhHHHHHHhHhhhhccc-cccee----ecccccccCcceEEEEcCCCchhhcccccccchh
Confidence 00000 012222211 11111 11111 111356777888888887654322111 11
Q ss_pred -cCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcc--ccceeeeccccee-ecccCCCCce
Q 016694 227 -HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEE--AKGCVVFEELGYL-GLDCLPSLTS 302 (384)
Q Consensus 227 -~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L-~l~~c~~L~~ 302 (384)
.|+++..+.+.+|....++.. ..-.|+|+.|.+.+|..+++++.....-. ......|..+..+ .+.+.+.++.
T Consensus 744 ~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred hhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 255677777777776666533 23457888888888887777765421111 1134567777777 4666666666
Q ss_pred ecCCCcccCCCCccEEEeccCCCCCccCCC
Q 016694 303 FCLGNYALEFPSLEHVVVRQCPTMKIFSQG 332 (384)
Q Consensus 303 l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~ 332 (384)
+... ....+.|+.+.+..|+++..+|..
T Consensus 821 i~~~--~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 821 LYWL--PLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred eEec--ccCccchhheehhcCcccccCccc
Confidence 6553 334566888899999888888854
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.07 E-value=1.4e-11 Score=121.85 Aligned_cols=253 Identities=19% Similarity=0.173 Sum_probs=164.0
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|+.|+.++|+.. .+.. . ..-.+|++++++.+ ++..+| .+++.|.+|+.+.+..| .+..++....
T Consensus 219 ~~l~~L~a~~n~l~-~~~~-~----p~p~nl~~~dis~n-~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~ri~---- 284 (1081)
T KOG0618|consen 219 PSLTALYADHNPLT-TLDV-H----PVPLNLQYLDISHN-NLSNLP--EWIGACANLEALNANHN-RLVALPLRIS---- 284 (1081)
T ss_pred cchheeeeccCcce-eecc-c----cccccceeeecchh-hhhcch--HHHHhcccceEecccch-hHHhhHHHHh----
Confidence 56777777777533 2211 1 23468999999988 777775 66889999999999998 7777765543
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCC-------CeeEEEecCCCCcccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSE 157 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-------~L~~L~i~~~~~~~~~~~ 157 (384)
...+|+.|.+..+. ++.++. ....+..|++|++.. ..+..+|.. .++.++.+.++....++-
T Consensus 285 ------~~~~L~~l~~~~ne-l~yip~---~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 285 ------RITSLVSLSAAYNE-LEYIPP---FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred ------hhhhHHHHHhhhhh-hhhCCC---cccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 56678888887776 777776 555678888888877 355555521 134444444444333311
Q ss_pred c-------cccccC---CcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCccc
Q 016694 158 E-------NFFLTD---QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 227 (384)
Q Consensus 158 ~-------~~~~~~---~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 227 (384)
. ..+.++ --..+|+.+..+.+|+.|+|+++ .+..++... ..++..|++|++++ ++++.+|..+..
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~---~~kle~LeeL~LSG-NkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASK---LRKLEELEELNLSG-NKLTTLPDTVAN 428 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHH---HhchHHhHHHhccc-chhhhhhHHHHh
Confidence 0 011111 11234444457888899998887 566544432 25677888888888 478888887888
Q ss_pred CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCC
Q 016694 228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 299 (384)
Q Consensus 228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 299 (384)
+..|++|...+. .+... | -...++.|+.+|++. +.+.++... .. ..-|+|++|++++.+.
T Consensus 429 ~~~L~tL~ahsN-~l~~f--P-e~~~l~qL~~lDlS~-N~L~~~~l~-~~------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSN-QLLSF--P-ELAQLPQLKVLDLSC-NNLSEVTLP-EA------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCC-ceeec--h-hhhhcCcceEEeccc-chhhhhhhh-hh------CCCcccceeeccCCcc
Confidence 888888877764 35444 3 345678888888885 556554322 11 1127889999888765
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.90 E-value=1.4e-10 Score=107.44 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=22.0
Q ss_pred CCCCCccEEEeecCCCCcccC---chhHHhcCCCCCEEEEecc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~ 69 (384)
..+.+|+.|++++| .++... ........+.|++|+++++
T Consensus 20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 20 PKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred HHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccc
Confidence 34566777787777 443211 1112335566777777766
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.89 E-value=6.4e-11 Score=95.29 Aligned_cols=160 Identities=21% Similarity=0.203 Sum_probs=115.7
Q ss_pred CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694 29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 108 (384)
Q Consensus 29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 108 (384)
+..+.+...|.++.+ +++.+||. +..+.+|+.|++.++ .++++|.... .+++|++|++.-+ .+..
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~lp~~is----------sl~klr~lnvgmn-rl~~ 93 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEELPTSIS----------SLPKLRILNVGMN-RLNI 93 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhcChhhh----------hchhhhheecchh-hhhc
Confidence 456788899999998 77888665 569999999999999 8998887653 7889999998744 3666
Q ss_pred cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694 109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 188 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 188 (384)
+|. ..+.+|.|+.|++.... +.+- ++..-|. .+..|+.|+++.+
T Consensus 94 lpr---gfgs~p~levldltynn-l~e~----------------------------~lpgnff---~m~tlralyl~dn- 137 (264)
T KOG0617|consen 94 LPR---GFGSFPALEVLDLTYNN-LNEN----------------------------SLPGNFF---YMTTLRALYLGDN- 137 (264)
T ss_pred Ccc---ccCCCchhhhhhccccc-cccc----------------------------cCCcchh---HHHHHHHHHhcCC-
Confidence 666 77889999999998743 3221 1111111 3566677777665
Q ss_pred ccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694 189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV 245 (384)
Q Consensus 189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 245 (384)
..+.++.+ .+.+++|+.|.+++. .+-++|..++.+.+|++|+|.+. .++.+
T Consensus 138 dfe~lp~d----vg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 138 DFEILPPD----VGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred CcccCChh----hhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc-eeeec
Confidence 44444332 477888888888874 56678888888888888888885 46655
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-10 Score=92.99 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=39.3
Q ss_pred cccCCccEEeccccccccccccccccc-ccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694 174 VAFPQLRYLELSRLHKVQHLWKENDES-NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 252 (384)
Q Consensus 174 ~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 252 (384)
|.+|.|+.||+.++ ++.+-. .|+ ...+.-|+.|.+++. ..+.+|+.++.+.+|+.|.+.... +-++ +.-.+
T Consensus 99 gs~p~levldltyn-nl~e~~---lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~l--pkeig 170 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENS---LPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSL--PKEIG 170 (264)
T ss_pred CCCchhhhhhcccc-cccccc---CCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhC--cHHHH
Confidence 35555666666554 222110 111 123444555555552 455555555666666666555532 3233 33334
Q ss_pred ccCcccEEeecc
Q 016694 253 SLVNLGRMKIAD 264 (384)
Q Consensus 253 ~l~~L~~L~l~~ 264 (384)
.+..|++|+|.+
T Consensus 171 ~lt~lrelhiqg 182 (264)
T KOG0617|consen 171 DLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHhccc
Confidence 555566666655
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=5.2e-09 Score=107.90 Aligned_cols=250 Identities=20% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCC-CcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTN-MLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
..+...+.++ .+..+ +.. ...++|++|-+.++.. +... +..++..++.|+.||+++|..+.++|....
T Consensus 524 ~~rr~s~~~~-~~~~~----~~~-~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~---- 592 (889)
T KOG4658|consen 524 SVRRMSLMNN-KIEHI----AGS-SENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIG---- 592 (889)
T ss_pred heeEEEEecc-chhhc----cCC-CCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHh----
Confidence 3444454444 34443 333 2455899999988753 4444 444567899999999999988888877664
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEEN 159 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~ 159 (384)
.+-+|++|+++++. +.++|. .+.++..|.+|++.....+...+ +++|++|.+-.... .
T Consensus 593 ------~Li~LryL~L~~t~-I~~LP~---~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~-------~ 655 (889)
T KOG4658|consen 593 ------ELVHLRYLDLSDTG-ISHLPS---GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL-------S 655 (889)
T ss_pred ------hhhhhhcccccCCC-ccccch---HHHHHHhhheeccccccccccccchhhhcccccEEEeecccc-------c
Confidence 67789999999876 778887 78888899999988766555443 45566666643210 0
Q ss_pred ccccCCcccccCCccccCCccEEeccccccccccccccccccccccccc----EEeeccCcccccccCCcccCCCcCEEE
Q 016694 160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHLENLATLE 235 (384)
Q Consensus 160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~ 235 (384)
.+...+..+ ..+.+|+.+....... ..+ . ....+..|. .+.+.+| .....+..+..+.+|+.|.
T Consensus 656 -~~~~~l~el----~~Le~L~~ls~~~~s~-~~~--e---~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 656 -NDKLLLKEL----ENLEHLENLSITISSV-LLL--E---DLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEELS 723 (889)
T ss_pred -cchhhHHhh----hcccchhhheeecchh-HhH--h---hhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceEE
Confidence 000001111 1344444444432211 000 0 001122222 3333332 2334445567777788888
Q ss_pred eecCCCCeeec---ccccccc-cCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceec
Q 016694 236 VSKCHGLINVL---TLSTSES-LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 304 (384)
Q Consensus 236 l~~c~~l~~l~---~~~~~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 304 (384)
+.+|...+... ....... ++++..+.+.+|........ ....|+|+.|.+..|+.++++-
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---------~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---------LLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---------hhccCcccEEEEecccccccCC
Confidence 88876543221 0011111 45566666666655443321 1237788888888777766653
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1e-09 Score=101.65 Aligned_cols=119 Identities=15% Similarity=0.017 Sum_probs=62.5
Q ss_pred CCCCCceEecCCCcCcce-ecccCCCCCCCCCCccEEEeecCCCCcccC-----chhHHhcCCCCCEEEEecccCcceec
Q 016694 3 GFRDIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAI-----PANLIRCLNNLRWLEVRNCDSLEEVL 76 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~-i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~~ 76 (384)
.+.+|++|++.++. +.. -....+..+...++|++++++++. +...+ ....++.+++|++|++++| .+....
T Consensus 21 ~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~ 97 (319)
T cd00116 21 KLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDG 97 (319)
T ss_pred HHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhH
Confidence 35679999999984 421 011113345677889999998873 33111 1123456889999999998 444221
Q ss_pred ccccccccccccCCcccccceeccCccccccc--cccCcccccCC-CCceeEeeccCC
Q 016694 77 HLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEM-PELRYLAIENCP 131 (384)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~-~~L~~L~l~~c~ 131 (384)
..... .... . ++|++|+++++. +.. .+........+ ++|+.|++++|.
T Consensus 98 ~~~~~-~l~~----~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 98 CGVLE-SLLR----S-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHH-HHhc----c-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 11110 0000 2 347777777665 221 00000122233 566666666653
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.4e-09 Score=94.95 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=114.9
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
.++..|+.+.|++| .+...+....+..|++++.|+++.+ -+..+.+.. ..+. .+|+|+.|+++.+. +..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~---~i~e----qLp~Le~LNls~Nr-l~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVL---KIAE----QLPSLENLNLSSNR-LSNF 187 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHH---HHHH----hcccchhccccccc-ccCC
Confidence 46777888888876 4343332234667888888888877 443332211 1112 67778888887765 3333
Q ss_pred ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694 110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 189 (384)
Q Consensus 110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 189 (384)
.. ......++.|+.|.++.|.. +.- .+..+.. .+|+|+.|+++++..
T Consensus 188 ~~-s~~~~~l~~lK~L~l~~CGl-s~k----------------------------~V~~~~~---~fPsl~~L~L~~N~~ 234 (505)
T KOG3207|consen 188 IS-SNTTLLLSHLKQLVLNSCGL-SWK----------------------------DVQWILL---TFPSLEVLYLEANEI 234 (505)
T ss_pred cc-ccchhhhhhhheEEeccCCC-CHH----------------------------HHHHHHH---hCCcHHHhhhhcccc
Confidence 32 22333566777777777621 100 1111111 588999999988742
Q ss_pred cccccccccccccccccccEEeeccCccccccc--CCcccCCCcCEEEeecCCCCeeeccccc-----ccccCcccEEee
Q 016694 190 VQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTLST-----SESLVNLGRMKI 262 (384)
Q Consensus 190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~l 262 (384)
... .. .....++.|++|+|++++.+. ++ ...+.++.|+.|.++.| ++.++..++. ...+|+|++|.+
T Consensus 235 ~~~---~~-~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 235 ILI---KA-TSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred cce---ec-chhhhhhHHhhccccCCcccc-cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeec
Confidence 211 11 113567789999999865443 33 45678899999999886 4666644433 346788888888
Q ss_pred cccccccEec
Q 016694 263 ADCKMIEQII 272 (384)
Q Consensus 263 ~~c~~l~~~~ 272 (384)
.+ +.+.+|.
T Consensus 309 ~~-N~I~~w~ 317 (505)
T KOG3207|consen 309 SE-NNIRDWR 317 (505)
T ss_pred cc-Ccccccc
Confidence 87 4455443
No 26
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.3e-09 Score=93.68 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=62.1
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 113 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 113 (384)
.|++++|++. .++......+..+|.+|+.|.+.|. .+.+-..... . .-.+|+.|+++.|..+++... .
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~i-----A----kN~~L~~lnlsm~sG~t~n~~-~ 253 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTI-----A----KNSNLVRLNLSMCSGFTENAL-Q 253 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHH-----h----ccccceeeccccccccchhHH-H
Confidence 5888888875 5554444456778899999999887 5543322221 1 456789999999988877654 4
Q ss_pred ccccCCCCceeEeeccCCCcc
Q 016694 114 ENIIEMPELRYLAIENCPDME 134 (384)
Q Consensus 114 ~~~~~~~~L~~L~l~~c~~l~ 134 (384)
....+|.+|..|++++|...+
T Consensus 254 ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred HHHHhhhhHhhcCchHhhccc
Confidence 455678889999999986544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.48 E-value=3e-09 Score=96.33 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=53.8
Q ss_pred cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCcc
Q 016694 250 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF 329 (384)
Q Consensus 250 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 329 (384)
-++.+++|++|++++ +.++.+-.. .+.....++.|.+.. .+++.+... .+.++..|+.|.++++ +++.+
T Consensus 269 cf~~L~~L~~lnlsn-N~i~~i~~~-------aFe~~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N-~it~~ 337 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSN-NKITRIEDG-------AFEGAAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDN-QITTV 337 (498)
T ss_pred HHhhcccceEeccCC-Cccchhhhh-------hhcchhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCC-eeEEE
Confidence 356777888888876 445544221 222255666666655 355555433 2556778888888886 45544
Q ss_pred -CCCCcCCCCCeeeccCCCC
Q 016694 330 -SQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 330 -p~~~~~~~~L~~l~i~~~~ 348 (384)
|..+..+.+|..+.+-.|+
T Consensus 338 ~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ecccccccceeeeeehccCc
Confidence 4445667788888877763
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4e-08 Score=90.25 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCccc-CchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA-IPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
.+.+|+++.+.++ .++.... -+....|++++.|+|+++ -+... +-..++.+||+|+.|+++.| .+....+..-.
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~--~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGI--EEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCc-cccccch--hhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccch
Confidence 3567888888888 4554311 023467999999999997 44443 33457889999999999999 55433222210
Q ss_pred cccccccCCcccccceeccCcccc-ccccccCcccccCCCCceeEeeccCCCcccc--c---CCCeeEEEecCCC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETF--I---SNSVVHVTTDNKE 150 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--~---~~~L~~L~i~~~~ 150 (384)
..+++|+.|.+++|.. ..++ .+....||+|+.|++.....+... + +..|+.|+++++.
T Consensus 194 --------~~l~~lK~L~l~~CGls~k~V---~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 194 --------LLLSHLKQLVLNSCGLSWKDV---QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred --------hhhhhhheEEeccCCCCHHHH---HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 1678999999999972 2333 336677999999999887433211 1 2335555555544
No 29
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.42 E-value=1.2e-08 Score=100.18 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc-cCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
.+++|+.+.+.+|..++......++..+++|++|++++| ......+ ........ .+++|+.|++..+..+++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~----~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP--LLLLLLLS----ICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch--hHhhhhhh----hcCCcCccchhhhhccCch
Confidence 367777777777777666443444567777888877763 1111111 00011111 5567777777777655444
Q ss_pred ccCcccccCCCCceeEeeccCCCcc
Q 016694 110 CNFTENIIEMPELRYLAIENCPDME 134 (384)
Q Consensus 110 ~~~~~~~~~~~~L~~L~l~~c~~l~ 134 (384)
.. ......+++|+.|.+..|..++
T Consensus 260 ~l-~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 260 GL-SALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred hH-HHHHhhCCCcceEccCCCCccc
Confidence 32 1122336777777777776554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=2.3e-07 Score=77.32 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
+..++++|++.++ .+..| +.++ .+.+|+.|++++| .++.+.. +..+++|++|++++| .++++.+....
T Consensus 17 n~~~~~~L~L~~n-~I~~I-----e~L~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTI-----ENLGATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSISEGLDK 85 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccc-ccccc-----cchhhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCccccchHH
Confidence 3456788888888 67664 2244 5788899999988 6676643 357788999999988 78776432211
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 132 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 132 (384)
.+|+|++|++.++. +.++.. -.....+|+|+.|++.++|-
T Consensus 86 ---------~lp~L~~L~L~~N~-I~~l~~-l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 86 ---------NLPNLQELYLSNNK-ISDLNE-LEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ---------H-TT--EEE-TTS----SCCC-CGGGGG-TT--EEE-TT-GG
T ss_pred ---------hCCcCCEEECcCCc-CCChHH-hHHHHcCCCcceeeccCCcc
Confidence 57889999888775 555443 23456688888888887653
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=5e-08 Score=85.51 Aligned_cols=203 Identities=19% Similarity=0.133 Sum_probs=119.3
Q ss_pred CCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 6 DIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
.|++|+++.. .++.. -.+ -+..|+.|+.|.+.+. .+.+-.-.. +..-.+|+.|+++.|.++++..... .
T Consensus 186 Rlq~lDLS~s-~it~stl~~---iLs~C~kLk~lSlEg~-~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~l----l 255 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHG---ILSQCSKLKNLSLEGL-RLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQL----L 255 (419)
T ss_pred hhHHhhcchh-heeHHHHHH---HHHHHHhhhhcccccc-ccCcHHHHH-HhccccceeeccccccccchhHHHH----H
Confidence 4777787765 34321 011 1356778888888886 444432333 3355788888888887776442211 1
Q ss_pred ccccCCcccccceeccCccccccccccCcccc-cCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENI-IEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
++ .+..|.+|+++.|...++... ..+ .--++|+.|++++|.+.-...
T Consensus 256 ~~----scs~L~~LNlsWc~l~~~~Vt--v~V~hise~l~~LNlsG~rrnl~~s-------------------------- 303 (419)
T KOG2120|consen 256 LS----SCSRLDELNLSWCFLFTEKVT--VAVAHISETLTQLNLSGYRRNLQKS-------------------------- 303 (419)
T ss_pred HH----hhhhHhhcCchHhhccchhhh--HHHhhhchhhhhhhhhhhHhhhhhh--------------------------
Confidence 22 567788888887764433311 111 124578888888885532110
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccc-ccCCcccCCCcCEEEeecCCCC
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKCHGL 242 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~c~~l 242 (384)
.+..+.. .+|+|..||++.+..++.= -+.....++.|++|.++.|..+.. --..+.+.|.|.+|++.+|-.-
T Consensus 304 -h~~tL~~---rcp~l~~LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 304 -HLSTLVR---RCPNLVHLDLSDSVMLKND---CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred -HHHHHHH---hCCceeeeccccccccCch---HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 1111222 6888999999888666541 111235678899999998876541 1134577889999999998533
Q ss_pred eeecccccccccCcccE
Q 016694 243 INVLTLSTSESLVNLGR 259 (384)
Q Consensus 243 ~~l~~~~~~~~l~~L~~ 259 (384)
+.. ......+|+|+.
T Consensus 377 t~m--el~~e~~~~lki 391 (419)
T KOG2120|consen 377 TTM--ELLKEMLSHLKI 391 (419)
T ss_pred hHH--HHHHHhCccccc
Confidence 322 223345666654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.8e-06 Score=71.97 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=50.5
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+.+|+.|++++| .+..+ +.+..+++|+.|++++| +++++.. .+...+++|++|.+++| .+.++....
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l-----~~l~~L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N-~I~~l~~l~--- 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKL-----EGLPGLPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNN-KISDLNELE--- 107 (175)
T ss_dssp T-TT--EEE-TTS---S-------TT----TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS----SCCCCG---
T ss_pred hhcCCCEEECCCC-CCccc-----cCccChhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCC-cCCChHHhH---
Confidence 3678999999999 78875 23668999999999998 7777743 23357899999999999 887664322
Q ss_pred ccccccCCcccccceeccCccccccccccCc-ccccCCCCceeEeeccC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENC 130 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c 130 (384)
.+. .+++|++|++.+++ ++.-+.+. ..+..+|+|+.||-...
T Consensus 108 -~L~----~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 108 -PLS----SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -GGG----G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred -HHH----cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 223 78999999999998 33332211 13445888888875543
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=8.9e-06 Score=76.18 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=32.9
Q ss_pred cCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCee
Q 016694 176 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN 244 (384)
Q Consensus 176 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 244 (384)
+.+++.|++++| .++.++. ..++|++|.+++|..++.+|..+ .++|+.|.+++|..+..
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG 109 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc
Confidence 455666666666 5555431 12356666666666666555432 24566666666654443
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=1.7e-05 Score=74.32 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=71.8
Q ss_pred cCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694 57 CLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF 136 (384)
Q Consensus 57 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 136 (384)
.++++..|++++| .++.+|. .-++|++|.+.+|..++.+|. .+ .++|++|++.+|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP~---~L--P~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLPG---SI--PEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCCc---hh--hhhhhheEccCccccccc
Confidence 4677777777777 6666651 223577777777777666654 11 346777777777666554
Q ss_pred cCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694 137 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 216 (384)
Q Consensus 137 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~ 216 (384)
| .+|+.|.+.+.. |..+..+ .++|+.|.+..+........ + ...+++|++|.+.+|.
T Consensus 111 P-~sLe~L~L~~n~------------~~~L~~L------PssLk~L~I~~~n~~~~~~l---p-~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 111 P-ESVRSLEIKGSA------------TDSIKNV------PNGLTSLSINSYNPENQARI---D-NLISPSLKTLSLTGCS 167 (426)
T ss_pred c-cccceEEeCCCC------------CcccccC------cchHhheecccccccccccc---c-cccCCcccEEEecCCC
Confidence 3 345556554322 1112211 23566666543211110000 0 1223567777777766
Q ss_pred ccccccCCcccCCCcCEEEeecC
Q 016694 217 KLQKLVTPSWHLENLATLEVSKC 239 (384)
Q Consensus 217 ~l~~l~~~~~~~~~L~~L~l~~c 239 (384)
.+. +|..+. .+|+.|.++.+
T Consensus 168 ~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 168 NII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccc-Cccccc--ccCcEEEeccc
Confidence 442 222211 46777776653
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=3.6e-06 Score=57.36 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=39.5
Q ss_pred CCCceEecCCCcCcceecccCC-CCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQA-LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p-~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 69 (384)
|+|++|+++++ .+..+ | ..+..+++|++|++++| +++.+++. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i----~~~~f~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI----PPDSFSNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEE----CTTTTTTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCcc----CHHHHcCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCC
Confidence 46777777777 66665 3 34566777777777766 66666443 3567777777777776
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.15 E-value=5.2e-08 Score=88.44 Aligned_cols=234 Identities=16% Similarity=0.148 Sum_probs=124.8
Q ss_pred CCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
.-..+++..+ .|..| |+ +++.+++||.|+|++| ++..+.|.+ ++++++|-+|-+.++++|++++...+.
T Consensus 68 ~tveirLdqN-~I~~i----P~~aF~~l~~LRrLdLS~N-~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~--- 137 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSI----PPGAFKTLHRLRRLDLSKN-NISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFG--- 137 (498)
T ss_pred cceEEEeccC-CcccC----Chhhccchhhhceeccccc-chhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhh---
Confidence 3456888888 78877 54 5678999999999998 888886665 568999999988885599988876644
Q ss_pred ccccCCcccccceeccCcccc-----------------------ccccccCcccccCCCCceeEeeccCCCc--------
Q 016694 85 KEHIGPLFPKLFELTLMDLPK-----------------------LKRFCNFTENIIEMPELRYLAIENCPDM-------- 133 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~-----------------------l~~~~~~~~~~~~~~~L~~L~l~~c~~l-------- 133 (384)
.+.+|+.|.+.-+.- ...++. .....+..++.+.+...+.+
T Consensus 138 ------gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 138 ------GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred ------hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchh
Confidence 333444433322210 111111 11222333333333322211
Q ss_pred ccc----cC--CC--------eeEEEecCCCCcccc-ccccc-----cccCCcccccC-CccccCCccEEeccccccccc
Q 016694 134 ETF----IS--NS--------VVHVTTDNKEPEKLT-SEENF-----FLTDQIQPLFD-EKVAFPQLRYLELSRLHKVQH 192 (384)
Q Consensus 134 ~~~----~~--~~--------L~~L~i~~~~~~~~~-~~~~~-----~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~ 192 (384)
+++ |. +. +..-++...+...+. +...+ ..|......+. .++++++|++|+++++ .++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccch
Confidence 100 00 00 000000000000000 00000 00100000000 0337899999999887 5666
Q ss_pred ccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694 193 LWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 264 (384)
Q Consensus 193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 264 (384)
+....| ...+++++|.+..+ ++..+.. .+..+..|+.|++.+. +++.+. +..+..+..|.+|.+-.
T Consensus 289 i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~-~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 289 IEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVA-PGAFQTLFSLSTLNLLS 355 (498)
T ss_pred hhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEe-cccccccceeeeeehcc
Confidence 544333 45677888888774 4555432 3456778888999885 466553 33456677778887754
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=4.2e-06 Score=57.00 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
++|++|++++| +++.+++. .+.++++|++|++++| .+..+++..+. .+++|++|+++++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~-~f~~l~~L~~L~l~~N-~l~~i~~~~f~---------~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD-SFSNLPNLETLDLSNN-NLTSIPPDAFS---------NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT-TTTTGTTESEEEETSS-SESEEETTTTT---------TSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH-HHcCCCCCCEeEccCC-ccCccCHHHHc---------CCCCCCEEeCcCCc
Confidence 46888888887 77777544 3567888888888877 77777665543 67788888877664
No 38
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.99 E-value=3.5e-07 Score=89.71 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecC-CCCcccC--chhHHhcCCCCCEEEEecccCcceecccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC-TNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLE 79 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (384)
.++.|+.|.+.++..+...+.. +....+++|+.|++++| ......+ .......+++|+.|++++|..+.+..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~--- 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLD--ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG--- 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHH--HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh---
Confidence 3678899999988777653211 22357899999999983 3333222 22345678999999999995444331
Q ss_pred cccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc
Q 016694 80 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 134 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 134 (384)
...... .+++|++|.+.+|..+++-.. ......+++|++|+++.|..++
T Consensus 261 -l~~l~~----~c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 -LSALAS----RCPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred -HHHHHh----hCCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCccch
Confidence 111112 588999999888886544332 2355678999999999998774
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.86 E-value=1.2e-05 Score=76.82 Aligned_cols=175 Identities=23% Similarity=0.284 Sum_probs=101.0
Q ss_pred CCCCCCCccEEEeecCCCCcccCchhHHhcCC-CCCEEEEecccCcceecccccccccccccCCcccccceeccCccccc
Q 016694 28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL 106 (384)
Q Consensus 28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 106 (384)
.+..+++++.|++.++ +++++++. ..... +|++|+++++ .+..++.... .++.|+.|+++++. +
T Consensus 111 ~~~~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l~~~~~----------~l~~L~~L~l~~N~-l 175 (394)
T COG4886 111 ELLELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESLPSPLR----------NLPNLKNLDLSFND-L 175 (394)
T ss_pred hhhcccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhhhhhhh----------ccccccccccCCch-h
Confidence 3456678888888887 77777665 33443 8999999998 7777742221 78889999998887 6
Q ss_pred cccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccc
Q 016694 107 KRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 186 (384)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 186 (384)
.+++. .....++|+.|++++. .++.+|.. .+...+|+++.+.+
T Consensus 176 ~~l~~---~~~~~~~L~~L~ls~N-~i~~l~~~---------------------------------~~~~~~L~~l~~~~ 218 (394)
T COG4886 176 SDLPK---LLSNLSNLNNLDLSGN-KISDLPPE---------------------------------IELLSALEELDLSN 218 (394)
T ss_pred hhhhh---hhhhhhhhhheeccCC-ccccCchh---------------------------------hhhhhhhhhhhhcC
Confidence 67765 3336778888888874 44433311 01233355555555
Q ss_pred ccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecc
Q 016694 187 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 264 (384)
Q Consensus 187 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 264 (384)
....+.+.. ...+.++..+.+.+. .+..++..+..+++++.|+++++. +.++.. ...+.+|+.|++++
T Consensus 219 N~~~~~~~~-----~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 219 NSIIELLSS-----LSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQ-ISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred Ccceecchh-----hhhcccccccccCCc-eeeeccchhccccccceecccccc-cccccc---ccccCccCEEeccC
Confidence 421221100 133444444443332 233334445555666666666642 444421 44556666666665
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.76 E-value=2.6e-05 Score=74.59 Aligned_cols=190 Identities=23% Similarity=0.253 Sum_probs=119.9
Q ss_pred EEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcc-cccceeccCccccccccccCccc
Q 016694 37 HLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-PKLFELTLMDLPKLKRFCNFTEN 115 (384)
Q Consensus 37 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~ 115 (384)
.+++..+........ +..++.+..|++.++ .+.++++... .. ++|++|++.+.. ++.++. .
T Consensus 97 ~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~n-~i~~i~~~~~----------~~~~nL~~L~l~~N~-i~~l~~---~ 158 (394)
T COG4886 97 SLDLNLNRLRSNISE---LLELTNLTSLDLDNN-NITDIPPLIG----------LLKSNLKELDLSDNK-IESLPS---P 158 (394)
T ss_pred eeeccccccccCchh---hhcccceeEEecCCc-ccccCccccc----------cchhhcccccccccc-hhhhhh---h
Confidence 466666532122222 346678999999988 7888877663 34 279999998876 665643 4
Q ss_pred ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694 116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 195 (384)
Q Consensus 116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 195 (384)
+..+++|+.|++..++ ++++ ....+..++|+.|+++++ .+..++.
T Consensus 159 ~~~l~~L~~L~l~~N~-l~~l---------------------------------~~~~~~~~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 159 LRNLPNLKNLDLSFND-LSDL---------------------------------PKLLSNLSNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred hhccccccccccCCch-hhhh---------------------------------hhhhhhhhhhhheeccCC-ccccCch
Confidence 5778899999988863 3222 111224678888888887 5555433
Q ss_pred cccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccc
Q 016694 196 ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ 275 (384)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 275 (384)
. ...+.+|++|.+.+.+ ....+..+..+.++..+.+.+. .+..+ +.....++++++|++.+ +.+.++..
T Consensus 204 ~----~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~~~--~~~~~~l~~l~~L~~s~-n~i~~i~~-- 272 (394)
T COG4886 204 E----IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLEDL--PESIGNLSNLETLDLSN-NQISSISS-- 272 (394)
T ss_pred h----hhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eeeec--cchhccccccceecccc-cccccccc--
Confidence 2 1245568888888754 3344455666777777775543 34332 44556778899999987 44554432
Q ss_pred cCccccceeeecccceeecccC
Q 016694 276 VGEEAKGCVVFEELGYLGLDCL 297 (384)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~c 297 (384)
.....+++.|++++.
T Consensus 273 -------~~~~~~l~~L~~s~n 287 (394)
T COG4886 273 -------LGSLTNLRELDLSGN 287 (394)
T ss_pred -------ccccCccCEEeccCc
Confidence 123678888888764
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=1.5e-05 Score=70.30 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=69.9
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccc--cCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL--VTPSWHLENLATLEVSKCHGLINVLTLSTSE 252 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 252 (384)
.+|.+++|.++.+ ++..+-.+.--....-+.+++|++..|...... -.-...||++..+.+..|+ +++...+..+.
T Consensus 144 ~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se 221 (418)
T KOG2982|consen 144 DLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE 221 (418)
T ss_pred cchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCC
Confidence 5777788877765 333322221111123346777777777643321 1123467888888888876 66665556666
Q ss_pred ccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCcee
Q 016694 253 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF 303 (384)
Q Consensus 253 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 303 (384)
.+|.+..|.++. .++.+|-.. .....||.|..|.+.+.|-...+
T Consensus 222 ~~p~~~~LnL~~-~~idswasv------D~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASV------DALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCcchhhhhcc-cccccHHHH------HHHcCCchhheeeccCCcccccc
Confidence 777777777776 456655432 12223788888887776655444
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.63 E-value=3.2e-06 Score=80.53 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=87.0
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
.|+.+.+.++ .+..+ |.+++.+..|.+++++.+ ++..+|+. +..|+ |+.|-++++ +++.+|.+.+
T Consensus 99 ~Le~liLy~n-~~r~i----p~~i~~L~~lt~l~ls~N-qlS~lp~~--lC~lp-Lkvli~sNN-kl~~lp~~ig----- 163 (722)
T KOG0532|consen 99 SLESLILYHN-CIRTI----PEAICNLEALTFLDLSSN-QLSHLPDG--LCDLP-LKVLIVSNN-KLTSLPEEIG----- 163 (722)
T ss_pred HHHHHHHHhc-cceec----chhhhhhhHHHHhhhccc-hhhcCChh--hhcCc-ceeEEEecC-ccccCCcccc-----
Confidence 3444555554 34445 777788888888888887 55655443 33444 888888888 7887776664
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC----CCeeEEEecCCCCcccccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS----NSVVHVTTDNKEPEKLTSEENFF 161 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~L~~L~i~~~~~~~~~~~~~~~ 161 (384)
..+.|.+|+++.|. +..++. ..+.+.+|+.|++++. .+..+|. -.|.+|+++.++
T Consensus 164 -----~~~tl~~ld~s~ne-i~slps---ql~~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNk----------- 222 (722)
T KOG0532|consen 164 -----LLPTLAHLDVSKNE-IQSLPS---QLGYLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNK----------- 222 (722)
T ss_pred -----cchhHHHhhhhhhh-hhhchH---HhhhHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCc-----------
Confidence 56677888888776 556665 5667777777877773 3333431 124555555333
Q ss_pred ccCCcccccCCccccCCccEEecccc
Q 016694 162 LTDQIQPLFDEKVAFPQLRYLELSRL 187 (384)
Q Consensus 162 ~~~~l~~l~~~~~~~~~L~~L~l~~~ 187 (384)
+..++-.+-++.+|++|-|.++
T Consensus 223 ----is~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 223 ----ISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ----eeecchhhhhhhhheeeeeccC
Confidence 2222222235666666666655
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=3.1e-05 Score=78.43 Aligned_cols=108 Identities=17% Similarity=0.321 Sum_probs=56.4
Q ss_pred CCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
.+|++|++++......-|... ++ .||+|++|.+.+- .+...-...+..++|+|..||++++ +++.+.+..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~k---ig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS---- 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKK---IGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGIS---- 192 (699)
T ss_pred HhhhhcCccccchhhccHHHH---HhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHh----
Confidence 356667776654443334322 33 3577777777663 2221112334556777777777777 666553333
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|+.|.+.+.. .+.... ...+..+++|+.|||++-
T Consensus 193 -------~LknLq~L~mrnLe-~e~~~~-l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 193 -------RLKNLQVLSMRNLE-FESYQD-LIDLFNLKKLRVLDISRD 230 (699)
T ss_pred -------ccccHHHHhccCCC-CCchhh-HHHHhcccCCCeeecccc
Confidence 45566666555544 222111 123445667777777664
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.58 E-value=2.2e-06 Score=81.55 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=37.2
Q ss_pred ccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 169 LFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 169 l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
+....+.+.+|+.|.+..+ ++.+++.+ ...=.|..|+++ |+++..+|..+..+..|++|.+.+++
T Consensus 181 lpsql~~l~slr~l~vrRn-~l~~lp~E-----l~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRN-HLEDLPEE-----LCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred chHHhhhHHHHHHHHHhhh-hhhhCCHH-----HhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCC
Confidence 3333445556666666554 34443332 112346666666 45677777777777777777777655
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=2.5e-05 Score=68.98 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=19.2
Q ss_pred CCCCccEEEeecCCCCc-------ccCchhHHhcCCCCCEEEEecc
Q 016694 31 FFNNLRHLVVDDCTNML-------SAIPANLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~-------~~~~~~~~~~l~~L~~L~l~~~ 69 (384)
.+..|++|.++..+.-- ...+.. ..-+++|+.+.++.|
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~-l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFN-LNAFRNLKTLKFSAL 224 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccc-hHHhhhhheeeeecc
Confidence 45667777776543110 111111 123467777777777
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.49 E-value=8.2e-06 Score=73.33 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.9
Q ss_pred CCCccEEEeccCC
Q 016694 312 FPSLEHVVVRQCP 324 (384)
Q Consensus 312 ~~~L~~L~l~~c~ 324 (384)
.|.|++|++++|.
T Consensus 297 k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 297 KPDLEKLNLNGNR 309 (382)
T ss_pred chhhHHhcCCccc
Confidence 5666666666653
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=9.1e-05 Score=46.52 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=19.6
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 75 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 75 (384)
+|++|++++| +++++++. +++|++|++|++++| .++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 4556666655 55555431 345666666666666 45544
No 48
>PLN03150 hypothetical protein; Provisional
Probab=97.49 E-value=0.00018 Score=72.82 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=45.4
Q ss_pred ccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcc
Q 016694 35 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 114 (384)
Q Consensus 35 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 114 (384)
++.|+|+++ .+.+..|.. ++.+++|+.|++++| .+.+..+.... .+++|+.|+++++..-..+|.
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~---------~l~~L~~LdLs~N~lsg~iP~--- 484 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLG---------SITSLEVLDLSYNSFNGSIPE--- 484 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHh---------CCCCCCEEECCCCCCCCCCch---
Confidence 556666665 444443443 446666666666666 45433232211 556666666666653334444
Q ss_pred cccCCCCceeEeeccCC
Q 016694 115 NIIEMPELRYLAIENCP 131 (384)
Q Consensus 115 ~~~~~~~L~~L~l~~c~ 131 (384)
.+..+++|+.|+++++.
T Consensus 485 ~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 485 SLGQLTSLRILNLNGNS 501 (623)
T ss_pred HHhcCCCCCEEECcCCc
Confidence 45566666666666654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=0.00016 Score=45.40 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP 51 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~ 51 (384)
++|++|+++++ .++++ |+.++.+++|++|++++| +++++++
T Consensus 1 ~~L~~L~l~~N-~i~~l----~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL----PPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSH----GGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCC-CCccc----CchHhCCCCCCEEEecCC-CCCCCcC
Confidence 47888888888 67776 655788888888888888 6666543
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.28 E-value=4.6e-05 Score=67.34 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=39.7
Q ss_pred CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
+.|+++|+++| .++.+.... + ..|+++.|+++.+. +..+. +...+++|+.|++++.
T Consensus 284 q~LtelDLS~N-~I~~iDESv------K----L~Pkir~L~lS~N~-i~~v~----nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESV------K----LAPKLRRLILSQNR-IRTVQ----NLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhcccccc-chhhhhhhh------h----hccceeEEeccccc-eeeeh----hhhhcccceEeecccc
Confidence 66888899888 676653222 2 67889999988876 44343 3566888889988874
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.0001 Score=74.63 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=17.3
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 69 (384)
+|++|++++-..+..--+..+...||.|+.|.+.|-
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~ 158 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR 158 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc
Confidence 555555555443333323333334555555555553
No 52
>PLN03150 hypothetical protein; Provisional
Probab=97.09 E-value=0.00078 Score=68.23 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=80.9
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
.++.|+++++.-...+ |..++.+++|+.|+|++| ++.+..|.. ++.+++|+.|++++| .+....+....
T Consensus 419 ~v~~L~L~~n~L~g~i----p~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~l~---- 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFI----PNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPESLG---- 487 (623)
T ss_pred EEEEEECCCCCccccC----CHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCC-CCCCCCchHHh----
Confidence 3778899988433344 777899999999999998 666554544 579999999999999 77755454432
Q ss_pred cccCCcccccceeccCccccccccccCcccccC-CCCceeEeeccCCCccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDMET 135 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~ 135 (384)
.+++|++|+++++..-..+|. .+.. ..++..+++.+++.+-.
T Consensus 488 -----~L~~L~~L~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 488 -----QLTSLRILNLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred -----cCCCCCEEECcCCcccccCCh---HHhhccccCceEEecCCccccC
Confidence 788999999999875556665 2222 34667788887665543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=9.3e-06 Score=79.54 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.7
Q ss_pred CCCCCCCCCccEEEeecCC
Q 016694 26 ALPVSFFNNLRHLVVDDCT 44 (384)
Q Consensus 26 p~~i~~l~~L~~L~l~~c~ 44 (384)
|-+|..|.+||+|.+++|+
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 4456778888888888884
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.86 E-value=3.3e-05 Score=69.57 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=120.2
Q ss_pred CCCCCceEecCCCcCcceecccCCC-------CCCCCCCccEEEeecCCCCcccCc---hhHHhcCCCCCEEEEecccCc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQAL-------PVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRNCDSL 72 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~-------~i~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l 72 (384)
+.++|+..+++++ .....-...|+ .+-.++.|++|+|++| .+....+ ..++.++..|++|.+.+| ++
T Consensus 56 ~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~-Gl 132 (382)
T KOG1909|consen 56 SKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNC-GL 132 (382)
T ss_pred hcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcC-CC
Confidence 3456777777776 33221111132 2345668888888887 4443222 224667888999999888 66
Q ss_pred ceeccccccc-----ccccccCCcccccceeccCcccccccccc--CcccccCCCCceeEeeccCCCcccccCCCeeEEE
Q 016694 73 EEVLHLEELN-----ADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPELRYLAIENCPDMETFISNSVVHVT 145 (384)
Q Consensus 73 ~~~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~ 145 (384)
....+...+. ...+ .-..-++|+.+...++. +...+. ........+.|+.+.+........
T Consensus 133 g~~ag~~l~~al~~l~~~k-k~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~e---------- 200 (382)
T KOG1909|consen 133 GPEAGGRLGRALFELAVNK-KAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPE---------- 200 (382)
T ss_pred ChhHHHHHHHHHHHHHHHh-ccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCc----------
Confidence 4322211000 0000 00134678888887765 443322 011233457788887766421110
Q ss_pred ecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccc-cccccccccEEeeccCccccc----
Q 016694 146 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQK---- 220 (384)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~~~~l~~---- 220 (384)
+..-++..+..+++|+.|||..+.--..- ...+. ....+++|++|++++|..-+.
T Consensus 201 -------------------G~~al~eal~~~~~LevLdl~DNtft~eg-s~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 201 -------------------GVTALAEALEHCPHLEVLDLRDNTFTLEG-SVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred -------------------hhHHHHHHHHhCCcceeeecccchhhhHH-HHHHHHHhcccchheeecccccccccccHHH
Confidence 11112222337889999999876321110 00000 125677899999999853221
Q ss_pred ccCC-cccCCCcCEEEeecCCCCeeecc---cccccccCcccEEeecccc
Q 016694 221 LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 221 l~~~-~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~ 266 (384)
+... -...|+|+++.+.+|. ++.-.. .......|.|++|.+.+|.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 1111 1357889999988874 332110 0111236888999998864
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.54 E-value=0.0058 Score=51.32 Aligned_cols=89 Identities=27% Similarity=0.379 Sum_probs=50.6
Q ss_pred CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694 29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 108 (384)
Q Consensus 29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 108 (384)
+..++.|.+|.+++| +++.+.|. +..-+++|+.|.+.+| ++.++.+... +. .+|+|++|.+-+++ .++
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~p----La----~~p~L~~Ltll~Np-v~~ 127 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDP----LA----SCPKLEYLTLLGNP-VEH 127 (233)
T ss_pred CCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhcch----hc----cCCccceeeecCCc-hhc
Confidence 345667777777776 66666433 3345577777777777 5555433221 22 66777777776665 333
Q ss_pred cccCc-ccccCCCCceeEeecc
Q 016694 109 FCNFT-ENIIEMPELRYLAIEN 129 (384)
Q Consensus 109 ~~~~~-~~~~~~~~L~~L~l~~ 129 (384)
-..+. --+..+|+|+.|++..
T Consensus 128 k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 128 KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccCceeEEEEecCcceEeehhh
Confidence 22211 1234567777777655
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.002 Score=57.17 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=12.6
Q ss_pred cccccccEEeeccCcccccc
Q 016694 202 KAFANLIRLKISECSKLQKL 221 (384)
Q Consensus 202 ~~~~~L~~L~l~~~~~l~~l 221 (384)
..+++|..|++...|....+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cCCchhheeeccCCcccccc
Confidence 45667777777766655544
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00011 Score=64.30 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=67.9
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+.+.+.|++.+| .+.+|.. ...|+.|++|.|+-| +++.+.|. .+|++|++|.+..| .|.++....+.
T Consensus 18 l~~vkKLNcwg~-~L~DIsi-----c~kMp~lEVLsLSvN-kIssL~pl---~rCtrLkElYLRkN-~I~sldEL~YL-- 84 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI-----CEKMPLLEVLSLSVN-KISSLAPL---QRCTRLKELYLRKN-CIESLDELEYL-- 84 (388)
T ss_pred HHHhhhhcccCC-CccHHHH-----HHhcccceeEEeecc-ccccchhH---HHHHHHHHHHHHhc-ccccHHHHHHH--
Confidence 345667777777 5665422 246888999999877 66766554 68899999999888 77776544443
Q ss_pred cccccCCcccccceeccCcccccccccc-Cc-ccccCCCCceeEe
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCN-FT-ENIIEMPELRYLA 126 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-~~~~~~~~L~~L~ 126 (384)
. .+|+|+.|.+..++....-+. +. .-+..+|+|++|+
T Consensus 85 --k----nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 --K----NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred --h----cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2 788888888887764432211 00 0123477777775
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.07 E-value=0.00021 Score=70.44 Aligned_cols=105 Identities=20% Similarity=0.279 Sum_probs=66.9
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
++.|++|++++| ++.++ +.+..++.|++|+|+.| .+..+|-.+.. .|+ |+.|.+++| .++.+-+.+
T Consensus 186 l~ale~LnLshN-k~~~v-----~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~-gc~-L~~L~lrnN-~l~tL~gie---- 251 (1096)
T KOG1859|consen 186 LPALESLNLSHN-KFTKV-----DNLRRLPKLKHLDLSYN-CLRHVPQLSMV-GCK-LQLLNLRNN-ALTTLRGIE---- 251 (1096)
T ss_pred HHHhhhhccchh-hhhhh-----HHHHhcccccccccccc-hhccccccchh-hhh-heeeeeccc-HHHhhhhHH----
Confidence 467888888888 44443 23567888888888876 66666655543 444 888888888 777665555
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+.+|+.|+++++- +..... -.....+..|++|++.++|
T Consensus 252 -------~LksL~~LDlsyNl-l~~hse-L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 -------NLKSLYGLDLSYNL-LSEHSE-LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -------hhhhhhccchhHhh-hhcchh-hhHHHHHHHHHHHhhcCCc
Confidence 66778888887664 322222 1123345566777766543
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.97 E-value=0.0029 Score=60.95 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694 29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 108 (384)
Q Consensus 29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 108 (384)
+..+++|..|++.++ ++..+... ...+++|++|+++++ .|+.+.+.. .++.|+.|++.++. ++.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i~~l~-----------~l~~L~~L~l~~N~-i~~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKLEGLS-----------TLTLLKELNLSGNL-ISD 154 (414)
T ss_pred cccccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccccchh-----------hccchhhheeccCc-chh
Confidence 345556666666655 44444331 234566666666666 555554433 44445666665554 333
Q ss_pred cccCcccccCCCCceeEeeccC
Q 016694 109 FCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~c 130 (384)
+.. ...+++|+.+++.++
T Consensus 155 ~~~----~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 155 ISG----LESLKSLKLLDLSYN 172 (414)
T ss_pred ccC----CccchhhhcccCCcc
Confidence 332 122555555555553
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.55 E-value=0.032 Score=46.98 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+...++++++ .+..... +.++++|.+|.+.+| .|..+.+.... .+|+|..|.+.++. +.++..
T Consensus 42 d~~d~iDLtdN-dl~~l~~---lp~l~rL~tLll~nN-rIt~I~p~L~~---------~~p~l~~L~LtnNs-i~~l~d- 105 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDN---LPHLPRLHTLLLNNN-RITRIDPDLDT---------FLPNLKTLILTNNS-IQELGD- 105 (233)
T ss_pred cccceeccccc-chhhccc---CCCccccceEEecCC-cceeeccchhh---------hccccceEEecCcc-hhhhhh-
Confidence 46677888887 4444322 247799999999998 88888665532 78889999998765 444443
Q ss_pred cccccCCCCceeEeeccCC
Q 016694 113 TENIIEMPELRYLAIENCP 131 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~ 131 (384)
......||.|++|.+-+.+
T Consensus 106 l~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cchhccCCccceeeecCCc
Confidence 2245668888888877643
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.41 E-value=0.0052 Score=59.21 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|+.|++.++ .++.+ ...+..+++|++|+++++ .++++... ..+..|+.|++.+| .+..+....
T Consensus 93 ~~~~l~~l~l~~n-~i~~i----~~~l~~~~~L~~L~ls~N-~I~~i~~l---~~l~~L~~L~l~~N-~i~~~~~~~--- 159 (414)
T KOG0531|consen 93 KLKSLEALDLYDN-KIEKI----ENLLSSLVNLQVLDLSFN-KITKLEGL---STLTLLKELNLSGN-LISDISGLE--- 159 (414)
T ss_pred cccceeeeecccc-chhhc----ccchhhhhcchheecccc-ccccccch---hhccchhhheeccC-cchhccCCc---
Confidence 5677888888887 56665 332567888888888887 66666554 46677888888888 676665433
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|+.++++++. ++.+.. .. ...+.+++.+++.+.
T Consensus 160 --------~l~~L~~l~l~~n~-i~~ie~-~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 160 --------SLKSLKLLDLSYNR-IVDIEN-DE-LSELISLEELDLGGN 196 (414)
T ss_pred --------cchhhhcccCCcch-hhhhhh-hh-hhhccchHHHhccCC
Confidence 46677777777776 333322 00 345666666666664
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.0016 Score=57.21 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=65.6
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+.+.+.|++-+| .+.++ +++..++.|+.|.++=| +|+.+.+.. .|.+|++|.+..+. +.++.
T Consensus 17 dl~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~pl~-----------rCtrLkElYLRkN~-I~sld 79 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLAPLQ-----------RCTRLKELYLRKNC-IESLD 79 (388)
T ss_pred HHHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccchhHH-----------HHHHHHHHHHHhcc-cccHH
Confidence 3567888888888 55644 55789999999999998 888886655 88999999998765 55554
Q ss_pred cCcccccCCCCceeEeeccCCCc
Q 016694 111 NFTENIIEMPELRYLAIENCPDM 133 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c~~l 133 (384)
. .....++|+|+.|++...|-.
T Consensus 80 E-L~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 80 E-LEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred H-HHHHhcCchhhhHhhccCCcc
Confidence 4 345678999999999876543
No 63
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=0.0031 Score=52.86 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=20.5
Q ss_pred cccccceeccCccccccccccCcccccCCCCceeEeeccCCC
Q 016694 91 LFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 132 (384)
Q Consensus 91 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 132 (384)
..++|+.|++++|+.+++... ..+..+++|+.|.+.+.+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchh
Confidence 445566666666655554332 1234455555555555443
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.0033 Score=52.73 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=15.1
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694 286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 323 (384)
Q Consensus 286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c 323 (384)
.++|+.|+|++|+.+++.... .+..+++|+.|.+.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCc
Confidence 444444444444444443321 1333444444444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.39 E-value=0.018 Score=50.27 Aligned_cols=35 Identities=37% Similarity=0.515 Sum_probs=15.3
Q ss_pred ccccEEeeccCcc--cccccCCcccCCCcCEEEeecCC
Q 016694 205 ANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 205 ~~L~~L~l~~~~~--l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
++|++|+++++.. +.++ ..+..+.+|..|++.+|.
T Consensus 91 P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCcccccccc-chhhhhcchhhhhcccCC
Confidence 5555555554321 2222 223344445555555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.61 E-value=0.031 Score=48.85 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCC--CCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCT--NMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~--~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
+..|+.|.+.++ .+..+ .. +-.+++||+|.++.+. -..++... +..+++|++|++++| ++..+....
T Consensus 42 ~~~le~ls~~n~-gltt~-~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N-ki~~lstl~-- 110 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTL-TN----FPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN-KIKDLSTLR-- 110 (260)
T ss_pred ccchhhhhhhcc-ceeec-cc----CCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC-ccccccccc--
Confidence 455666666665 33331 12 2367899999999873 22233333 567799999999999 665321111
Q ss_pred cccccccCCcccccceeccCccccccccccCcccc-cCCCCceeEeeccCCCc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENI-IEMPELRYLAIENCPDM 133 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~L~~L~l~~c~~l 133 (384)
.+. .+.+|..|++.+|... .+..+...+ .-+|+|++|+-..+..-
T Consensus 111 --pl~----~l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 111 --PLK----ELENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred --hhh----hhcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccccccCCc
Confidence 111 5677888888888733 233212222 23678888876665443
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.82 E-value=0.14 Score=24.77 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=7.3
Q ss_pred CCccEEEeccCCCCCccC
Q 016694 313 PSLEHVVVRQCPTMKIFS 330 (384)
Q Consensus 313 ~~L~~L~l~~c~~l~~lp 330 (384)
++|++|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 355666666664 44443
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.67 E-value=0.11 Score=26.97 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=13.0
Q ss_pred CccEEEeccCCCCCccCCCC
Q 016694 314 SLEHVVVRQCPTMKIFSQGV 333 (384)
Q Consensus 314 ~L~~L~l~~c~~l~~lp~~~ 333 (384)
+|++|++++| .++.+|.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 4677777777 666777654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.73 E-value=2.7 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=12.7
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEec
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 68 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 68 (384)
..+.+|+.+.+.. .+..+... .+.++++|+.+.+.+
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~-~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGEN-AFSNCTSLKSINFPN 44 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TT-TTTT-TT-SEEEESS
T ss_pred hCCCCCCEEEECC--CeeEeChh-hcccccccccccccc
Confidence 3444555555543 23333222 234555555555544
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.43 E-value=0.052 Score=42.94 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=51.9
Q ss_pred CccEEEeecCCCCcccCc-hhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 34 NLRHLVVDDCTNMLSAIP-ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+..++|+.| .+..++. .+......+|...++++| .++++++..-. .+|-++.|++.++. +.++|.
T Consensus 28 E~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~---------kf~t~t~lNl~~ne-isdvPe- 94 (177)
T KOG4579|consen 28 ELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTI---------KFPTATTLNLANNE-ISDVPE- 94 (177)
T ss_pred Hhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhh---------ccchhhhhhcchhh-hhhchH-
Confidence 4455666776 3332211 112335566777788887 77777654432 56677888887766 667776
Q ss_pred cccccCCCCceeEeeccCC
Q 016694 113 TENIIEMPELRYLAIENCP 131 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~ 131 (384)
....+|.|+.++++..+
T Consensus 95 --E~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 95 --ELAAMPALRSLNLRFNP 111 (177)
T ss_pred --HHhhhHHhhhcccccCc
Confidence 46778888888887754
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.58 E-value=0.039 Score=43.63 Aligned_cols=84 Identities=19% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694 29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 108 (384)
Q Consensus 29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 108 (384)
+.....|+.+++++| .+.++ |..+....+....|+++++ .+.++|.+. . .+|.|+.|++..++ +..
T Consensus 49 l~~~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE~-A---------am~aLr~lNl~~N~-l~~ 114 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANN-EISDVPEEL-A---------AMPALRSLNLRFNP-LNA 114 (177)
T ss_pred HhCCceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchh-hhhhchHHH-h---------hhHHhhhcccccCc-ccc
Confidence 346678999999998 77777 4445557788999999999 899997664 2 78999999999887 433
Q ss_pred cccCcccccCCCCceeEeecc
Q 016694 109 FCNFTENIIEMPELRYLAIEN 129 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~ 129 (384)
.+. -+..+.++-.|+..+
T Consensus 115 ~p~---vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 115 EPR---VIAPLIKLDMLDSPE 132 (177)
T ss_pred chH---HHHHHHhHHHhcCCC
Confidence 433 233344555555444
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.41 E-value=0.15 Score=45.03 Aligned_cols=93 Identities=12% Similarity=-0.017 Sum_probs=47.3
Q ss_pred CCCCceEecCCCcCcce--ecccCCCCCCCCCCccEEEeecCC--CCcccCc------hhHHhcCCCCCEEEEecccCcc
Q 016694 4 FRDIKYLQLGHFPRLQE--IWHGQALPVSFFNNLRHLVVDDCT--NMLSAIP------ANLIRCLNNLRWLEVRNCDSLE 73 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~--i~~~~p~~i~~l~~L~~L~l~~c~--~l~~~~~------~~~~~~l~~L~~L~l~~~~~l~ 73 (384)
+..+..++++++.--++ -|. ...|.+-.+|+..++++-. ...+..+ ....-+||+|++.++++| .+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l--~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEEL--CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHH--HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence 44567778887742221 122 2234556677777776531 1111111 112337888888888888 443
Q ss_pred eecccccccccccccCCcccccceeccCccc
Q 016694 74 EVLHLEELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
...++..+ +.+. .-..|++|.+.+|.
T Consensus 106 ~~~~e~L~-d~is----~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELG-DLIS----SSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHH-HHHh----cCCCceeEEeecCC
Confidence 22222111 1111 34567888887775
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.43 E-value=0.46 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.4
Q ss_pred cccceeecccCCCCce
Q 016694 287 EELGYLGLDCLPSLTS 302 (384)
Q Consensus 287 ~~L~~L~l~~c~~L~~ 302 (384)
++|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555555544
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.07 E-value=5 Score=31.03 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=54.5
Q ss_pred CCCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccc
Q 016694 1 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (384)
|..+++|+.+.+.. .++.+. ..++..+++|+.+++.. .+..+.. ..+.+++.|+++.+.+ .+..+....+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~---~~~F~~~~~l~~i~~~~--~~~~i~~-~~F~~~~~l~~i~~~~--~~~~i~~~~F 77 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIG---ENAFSNCTSLKSINFPN--NLTSIGD-NAFSNCKSLESITFPN--NLKSIGDNAF 77 (129)
T ss_dssp TTT-TT--EEEETS--T--EE----TTTTTT-TT-SEEEESS--TTSCE-T-TTTTT-TT-EEEEETS--TT-EE-TTTT
T ss_pred HhCCCCCCEEEECC--CeeEeC---hhhcccccccccccccc--cccccce-eeeecccccccccccc--cccccccccc
Confidence 45667899999874 355552 23467788999999987 4565533 3456888899999965 4555554432
Q ss_pred ccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694 81 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 129 (384)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 129 (384)
. .+++|+.+.+.. .+..++. .....+ +|+.+.+..
T Consensus 78 ~---------~~~~l~~i~~~~--~~~~i~~--~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 S---------NCTNLKNIDIPS--NITEIGS--SSFSNC-NLKEINIPS 112 (129)
T ss_dssp T---------T-TTECEEEETT--T-BEEHT--TTTTT--T--EEE-TT
T ss_pred c---------ccccccccccCc--cccEEch--hhhcCC-CceEEEECC
Confidence 1 477888888854 2445544 122334 777777653
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=79.40 E-value=0.78 Score=40.78 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=18.7
Q ss_pred CCCCCccEEEeecCCCCcccCch---hHHhcCCCCCEEEEecc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPA---NLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~ 69 (384)
-.|+.|+.+++++| .+...++. .++.+-..|++|.+.+|
T Consensus 89 lkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34555666666555 22222121 12344555666666655
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.96 E-value=1.4 Score=23.67 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=9.6
Q ss_pred CCCCEEEEecccCcceecc
Q 016694 59 NNLRWLEVRNCDSLEEVLH 77 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~ 77 (384)
++|++|++++| .++.++.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45555555555 5555543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.96 E-value=1.4 Score=23.67 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=9.6
Q ss_pred CCCCEEEEecccCcceecc
Q 016694 59 NNLRWLEVRNCDSLEEVLH 77 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~ 77 (384)
++|++|++++| .++.++.
T Consensus 2 ~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCEEECCCC-cCCcCCH
Confidence 45555555555 5555543
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.16 E-value=3.8 Score=21.41 Aligned_cols=11 Identities=36% Similarity=0.429 Sum_probs=5.9
Q ss_pred CCCCEEEEecc
Q 016694 59 NNLRWLEVRNC 69 (384)
Q Consensus 59 ~~L~~L~l~~~ 69 (384)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 56666666666
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.56 E-value=12 Score=20.31 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=10.3
Q ss_pred CCCCEEEEecccCccee
Q 016694 59 NNLRWLEVRNCDSLEEV 75 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~ 75 (384)
.+|++|+++.| .|+.+
T Consensus 2 ~~L~~L~L~~N-kI~~I 17 (26)
T smart00365 2 TNLEELDLSQN-KIKKI 17 (26)
T ss_pred CccCEEECCCC-cccee
Confidence 56777777777 55544
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.88 E-value=14 Score=20.02 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=9.6
Q ss_pred CCCEEEEecccCcceec
Q 016694 60 NLRWLEVRNCDSLEEVL 76 (384)
Q Consensus 60 ~L~~L~l~~~~~l~~~~ 76 (384)
+|++|++++| .++.+|
T Consensus 3 ~L~~L~vs~N-~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNN-QLTSLP 18 (26)
T ss_pred ccceeecCCC-ccccCc
Confidence 4666666666 555554
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.61 E-value=18 Score=35.64 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=42.0
Q ss_pred CCCCccEEEeecCCCCcccC-chhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAI-PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
+++.+..+.|++| ++..+- ..++...-|+|+.|++++|........+... .....|++|.+.+++..+.+
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--------~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--------LKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--------hcCCCHHHeeecCCccccch
Confidence 4556666666665 333321 1223455677777777776211111111100 13445677777777755554
Q ss_pred ccCcc----cccCCCCceeEe
Q 016694 110 CNFTE----NIIEMPELRYLA 126 (384)
Q Consensus 110 ~~~~~----~~~~~~~L~~L~ 126 (384)
..-.. ....||+|..|+
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 32001 112466666664
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.99 E-value=28 Score=19.01 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=4.4
Q ss_pred CccEEEeecC
Q 016694 34 NLRHLVVDDC 43 (384)
Q Consensus 34 ~L~~L~l~~c 43 (384)
+|++|+|++|
T Consensus 3 ~L~~LdL~~N 12 (28)
T smart00368 3 SLRELDLSNN 12 (28)
T ss_pred ccCEEECCCC
Confidence 3444444443
Done!