Query 016694
Match_columns 384
No_of_seqs 158 out of 1905
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 3.9E-21 1.3E-25 182.1 23.9 293 4-347 44-349 (390)
2 4fmz_A Internalin; leucine ric 99.9 3.4E-21 1.2E-25 179.5 21.4 207 3-264 42-252 (347)
3 3v47_A TOLL-like receptor 5B a 99.9 1.9E-20 6.6E-25 180.8 26.9 314 5-347 30-405 (455)
4 3rgz_A Protein brassinosteroid 99.9 1.4E-21 4.6E-26 200.9 17.9 239 4-266 293-549 (768)
5 4fmz_A Internalin; leucine ric 99.9 1.4E-20 4.9E-25 175.3 22.8 278 2-347 63-343 (347)
6 3rgz_A Protein brassinosteroid 99.9 2.1E-21 7.1E-26 199.6 17.3 310 2-347 220-548 (768)
7 3t6q_A CD180 antigen; protein- 99.9 1E-19 3.4E-24 182.2 29.1 109 3-130 55-163 (606)
8 2id5_A Lingo-1, leucine rich r 99.9 3.1E-20 1.1E-24 180.5 24.5 293 5-348 32-331 (477)
9 3oja_B Anopheles plasmodium-re 99.9 2.2E-20 7.6E-25 186.6 23.6 147 175-347 209-355 (597)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-20 3.7E-25 189.2 20.6 109 2-130 53-163 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-20 1.2E-24 185.4 22.5 160 174-348 396-556 (606)
12 3t6q_A CD180 antigen; protein- 99.9 2.3E-19 8E-24 179.5 27.6 59 286-347 475-533 (606)
13 2z81_A CD282 antigen, TOLL-lik 99.8 2.7E-19 9.3E-24 176.9 27.1 178 175-370 332-525 (549)
14 1o6v_A Internalin A; bacterial 99.8 1.5E-19 5.2E-24 175.2 23.9 292 3-348 66-386 (466)
15 4fcg_A Uncharacterized protein 99.8 2.5E-20 8.5E-25 172.4 17.2 230 33-322 81-310 (328)
16 3bz5_A Internalin-J, INLJ; leu 99.8 2.6E-19 8.8E-24 172.9 24.1 285 3-348 40-350 (457)
17 4eco_A Uncharacterized protein 99.8 1.4E-20 4.7E-25 189.4 15.3 324 2-347 203-576 (636)
18 4ecn_A Leucine-rich repeat pro 99.8 7.3E-20 2.5E-24 188.4 20.9 301 3-347 489-837 (876)
19 3o6n_A APL1; leucine-rich repe 99.8 2.5E-19 8.7E-24 169.6 21.9 277 3-324 67-350 (390)
20 4eco_A Uncharacterized protein 99.8 1.1E-19 3.7E-24 182.9 20.4 302 3-347 247-597 (636)
21 1o6v_A Internalin A; bacterial 99.8 3.9E-19 1.3E-23 172.4 23.5 285 4-348 45-364 (466)
22 2id5_A Lingo-1, leucine rich r 99.8 5E-19 1.7E-23 172.0 23.9 288 8-348 14-307 (477)
23 4fcg_A Uncharacterized protein 99.8 1.5E-19 5.2E-24 167.1 18.3 228 57-347 79-311 (328)
24 3oja_B Anopheles plasmodium-re 99.8 2.4E-19 8.3E-24 179.1 21.0 279 4-348 50-335 (597)
25 2z63_A TOLL-like receptor 4, v 99.8 5.9E-19 2E-23 175.2 23.5 232 91-347 280-528 (570)
26 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-19 5.6E-24 178.5 19.1 129 5-151 26-160 (549)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-18 3.6E-23 173.2 24.8 105 5-130 52-156 (562)
28 4ecn_A Leucine-rich repeat pro 99.8 4.4E-19 1.5E-23 182.6 21.8 323 2-348 445-817 (876)
29 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-18 4.7E-23 170.7 24.2 153 175-347 322-478 (520)
30 3bz5_A Internalin-J, INLJ; leu 99.8 9.4E-19 3.2E-23 169.0 22.1 275 28-348 37-329 (457)
31 2z63_A TOLL-like receptor 4, v 99.8 1.7E-18 5.7E-23 171.9 23.7 61 286-348 420-481 (570)
32 3v47_A TOLL-like receptor 5B a 99.8 4.7E-18 1.6E-22 164.1 24.9 298 2-330 51-412 (455)
33 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-18 1.5E-22 172.6 25.2 129 5-152 25-158 (680)
34 3g06_A SSPH2 (leucine-rich rep 99.8 6.4E-18 2.2E-22 168.4 25.5 252 6-347 41-294 (622)
35 2ft3_A Biglycan; proteoglycan, 99.8 3.8E-18 1.3E-22 157.9 21.1 283 6-347 34-330 (332)
36 2z7x_B TOLL-like receptor 1, v 99.8 4.6E-18 1.6E-22 167.0 22.8 307 5-348 21-455 (520)
37 3j0a_A TOLL-like receptor 5; m 99.8 9E-18 3.1E-22 174.3 26.0 312 4-348 23-392 (844)
38 1xku_A Decorin; proteoglycan, 99.8 1.3E-17 4.6E-22 154.1 23.8 265 6-347 32-303 (330)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.4E-18 2.2E-22 167.6 23.0 139 203-347 351-507 (562)
40 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-17 1.1E-21 166.4 26.3 140 202-347 451-594 (680)
41 2ft3_A Biglycan; proteoglycan, 99.8 6.3E-18 2.2E-22 156.5 19.4 271 4-324 53-331 (332)
42 3j0a_A TOLL-like receptor 5; m 99.8 2E-17 6.9E-22 171.6 24.7 89 1-104 69-159 (844)
43 1ogq_A PGIP-2, polygalacturona 99.8 1.8E-18 6.3E-23 158.7 14.6 247 33-347 50-301 (313)
44 1xku_A Decorin; proteoglycan, 99.8 2.1E-17 7.2E-22 152.8 21.4 270 5-347 52-329 (330)
45 1jl5_A Outer protein YOPM; leu 99.8 6.9E-17 2.4E-21 155.8 23.5 201 94-347 174-406 (454)
46 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-16 5.8E-21 159.2 27.0 132 205-347 445-577 (635)
47 2z80_A TOLL-like receptor 2, v 99.8 5.2E-18 1.8E-22 158.4 14.6 254 33-347 52-311 (353)
48 3zyi_A Leucine-rich repeat-con 99.8 1.6E-16 5.3E-21 153.4 23.6 130 203-347 169-300 (452)
49 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 157.6 18.8 112 6-136 76-187 (452)
50 3zyj_A Leucine-rich repeat-con 99.7 1.8E-16 6.1E-21 152.4 23.3 59 59-130 64-122 (440)
51 3zyj_A Leucine-rich repeat-con 99.7 6.4E-17 2.2E-21 155.6 19.7 110 6-134 65-174 (440)
52 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-16 6.2E-21 157.9 22.7 237 5-328 61-299 (622)
53 1ogq_A PGIP-2, polygalacturona 99.7 2.5E-17 8.4E-22 151.2 14.7 256 5-331 50-309 (313)
54 2z80_A TOLL-like receptor 2, v 99.7 4.9E-17 1.7E-21 151.8 14.6 259 5-326 52-314 (353)
55 3o53_A Protein LRIM1, AGAP0063 99.7 5.8E-18 2E-22 155.7 7.7 241 31-327 32-276 (317)
56 2z66_A Variable lymphocyte rec 99.7 6.4E-16 2.2E-20 141.2 20.9 244 9-347 11-258 (306)
57 3o53_A Protein LRIM1, AGAP0063 99.7 6.5E-17 2.2E-21 148.7 13.9 236 34-347 11-247 (317)
58 1jl5_A Outer protein YOPM; leu 99.7 3.4E-15 1.2E-19 143.9 25.3 276 6-348 72-368 (454)
59 4g8a_A TOLL-like receptor 4; l 99.7 2.7E-15 9.1E-20 150.4 25.3 110 227-348 443-553 (635)
60 2p1m_B Transport inhibitor res 99.7 2.5E-17 8.4E-22 164.3 7.0 135 3-149 64-221 (594)
61 2z66_A Variable lymphocyte rec 99.7 1.8E-15 6.1E-20 138.2 18.8 224 5-297 28-258 (306)
62 2p1m_B Transport inhibitor res 99.7 2.8E-18 9.5E-23 171.2 -2.6 218 3-236 103-345 (594)
63 3oja_A Leucine-rich immune mol 99.7 1.5E-15 5.2E-20 147.7 16.7 78 31-130 32-109 (487)
64 3ogk_B Coronatine-insensitive 99.7 1.5E-17 5.2E-22 165.8 2.2 159 202-377 315-493 (592)
65 1ozn_A Reticulon 4 receptor; N 99.7 4.5E-15 1.5E-19 134.1 18.3 221 8-297 14-235 (285)
66 3ogk_B Coronatine-insensitive 99.6 2.7E-17 9.1E-22 164.0 2.7 136 203-347 376-523 (592)
67 3oja_A Leucine-rich immune mol 99.6 1.7E-15 5.6E-20 147.5 15.2 100 3-131 32-131 (487)
68 2xwt_C Thyrotropin receptor; s 99.6 3.1E-15 1.1E-19 131.6 15.4 101 209-324 134-237 (239)
69 1ozn_A Reticulon 4 receptor; N 99.6 7.8E-15 2.7E-19 132.6 18.2 222 36-324 14-236 (285)
70 4ay9_X Follicle-stimulating ho 99.6 9.4E-15 3.2E-19 136.1 18.3 242 9-322 13-255 (350)
71 4ay9_X Follicle-stimulating ho 99.6 2.1E-14 7.3E-19 133.7 19.8 251 26-346 3-255 (350)
72 1h6u_A Internalin H; cell adhe 99.6 6.1E-15 2.1E-19 134.9 15.3 188 4-265 40-227 (308)
73 2xwt_C Thyrotropin receptor; s 99.6 1.2E-14 4E-19 127.9 16.5 203 33-299 31-238 (239)
74 2z62_A TOLL-like receptor 4, v 99.6 1.6E-14 5.6E-19 129.8 16.6 83 33-130 28-110 (276)
75 1wwl_A Monocyte differentiatio 99.6 2E-16 6.8E-21 145.1 3.1 258 30-347 40-306 (312)
76 2ast_B S-phase kinase-associat 99.6 5.6E-16 1.9E-20 143.4 5.4 228 6-297 48-282 (336)
77 1p9a_G Platelet glycoprotein I 99.6 5E-14 1.7E-18 127.6 17.9 199 2-266 7-206 (290)
78 2ast_B S-phase kinase-associat 99.6 2.5E-16 8.6E-21 145.7 2.8 247 33-348 47-304 (336)
79 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-17 8E-22 159.4 -4.5 164 175-347 225-408 (461)
80 2o6q_A Variable lymphocyte rec 99.6 1.6E-13 5.6E-18 122.9 18.4 84 175-265 131-215 (270)
81 3rfs_A Internalin B, repeat mo 99.6 3.6E-14 1.2E-18 127.4 14.0 194 30-297 38-232 (272)
82 1wwl_A Monocyte differentiatio 99.6 2.9E-14 9.7E-19 130.7 13.6 91 31-131 93-184 (312)
83 1z7x_W Ribonuclease inhibitor; 99.6 2.5E-16 8.5E-21 152.1 -0.7 128 5-151 3-154 (461)
84 2o6q_A Variable lymphocyte rec 99.5 2.4E-13 8.4E-18 121.7 16.8 193 6-240 17-216 (270)
85 4glp_A Monocyte differentiatio 99.5 5.6E-14 1.9E-18 128.6 12.7 209 32-297 90-304 (310)
86 1h6u_A Internalin H; cell adhe 99.5 3.3E-13 1.1E-17 123.3 14.3 169 2-240 60-228 (308)
87 1p9a_G Platelet glycoprotein I 99.5 8.6E-13 2.9E-17 119.5 16.9 200 29-298 6-206 (290)
88 2z62_A TOLL-like receptor 4, v 99.5 4.9E-12 1.7E-16 113.5 21.3 202 59-347 28-234 (276)
89 3rfs_A Internalin B, repeat mo 99.5 4.3E-13 1.5E-17 120.3 12.9 228 31-336 17-245 (272)
90 1h6t_A Internalin B; cell adhe 99.4 6.5E-13 2.2E-17 120.4 13.1 169 30-266 43-211 (291)
91 4glp_A Monocyte differentiatio 99.4 1.6E-13 5.4E-18 125.5 6.5 231 33-324 64-305 (310)
92 3m19_A Variable lymphocyte rec 99.4 5.3E-12 1.8E-16 111.7 15.7 102 7-130 16-117 (251)
93 1m9s_A Internalin B; cell inva 99.4 2.2E-12 7.4E-17 128.3 12.6 40 31-75 41-80 (605)
94 1h6t_A Internalin B; cell adhe 99.4 5.1E-12 1.7E-16 114.4 14.0 166 4-239 45-210 (291)
95 2ca6_A RAN GTPase-activating p 99.4 4.4E-14 1.5E-18 133.3 0.1 96 26-131 25-133 (386)
96 4ezg_A Putative uncharacterize 99.3 6.8E-12 2.3E-16 106.8 12.2 151 30-240 41-192 (197)
97 2ca6_A RAN GTPase-activating p 99.3 1.8E-13 6E-18 129.2 1.4 249 3-298 30-314 (386)
98 1m9s_A Internalin B; cell inva 99.3 1.1E-11 3.7E-16 123.3 13.6 168 3-240 41-208 (605)
99 3m19_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 107.5 13.9 107 5-130 35-141 (251)
100 3goz_A Leucine-rich repeat-con 99.3 1.2E-12 4E-17 122.5 4.3 95 30-131 19-120 (362)
101 3cvr_A Invasion plasmid antige 99.3 6.2E-11 2.1E-15 116.7 16.5 175 6-266 60-241 (571)
102 4ezg_A Putative uncharacterize 99.3 3.1E-11 1.1E-15 102.6 12.5 152 56-266 41-192 (197)
103 1xeu_A Internalin C; cellular 99.2 1.1E-11 3.9E-16 110.4 8.2 59 30-104 38-96 (263)
104 2o6s_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 102.8 10.7 150 32-240 27-176 (208)
105 3goz_A Leucine-rich repeat-con 99.2 2.3E-12 7.8E-17 120.5 2.5 263 38-348 3-295 (362)
106 1xeu_A Internalin C; cellular 99.2 6.5E-11 2.2E-15 105.5 11.8 100 3-130 39-138 (263)
107 3cvr_A Invasion plasmid antige 99.2 4.3E-10 1.5E-14 110.7 16.8 31 316-347 210-240 (571)
108 2ell_A Acidic leucine-rich nuc 99.2 1E-10 3.5E-15 96.6 9.5 60 5-74 24-85 (168)
109 2v70_A SLIT-2, SLIT homolog 2 99.2 4.7E-10 1.6E-14 97.1 13.6 61 175-240 103-164 (220)
110 2o6s_A Variable lymphocyte rec 99.1 2.5E-10 8.4E-15 97.8 11.3 166 36-266 10-176 (208)
111 3e6j_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 97.2 13.6 149 35-240 21-170 (229)
112 2xot_A Amphoterin-induced prot 99.1 3E-10 1E-14 106.0 11.0 84 33-130 39-122 (361)
113 3e6j_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 97.5 11.4 14 175-188 157-170 (229)
114 2je0_A Acidic leucine-rich nuc 99.1 9.1E-11 3.1E-15 94.9 6.0 106 4-130 16-123 (149)
115 2v9t_B SLIT homolog 2 protein 99.1 1.3E-09 4.6E-14 94.2 13.3 61 175-240 102-163 (220)
116 2v9t_B SLIT homolog 2 protein 99.1 1.1E-09 3.7E-14 94.8 12.4 150 8-216 14-163 (220)
117 2xot_A Amphoterin-induced prot 99.0 1.3E-09 4.3E-14 101.7 11.6 159 5-216 39-200 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.0 4E-09 1.4E-13 91.2 12.1 151 8-216 14-164 (220)
119 1dce_A Protein (RAB geranylger 99.0 2.5E-12 8.6E-17 127.0 -9.7 205 30-294 346-567 (567)
120 1a9n_A U2A', U2A'; complex (nu 98.9 8.3E-10 2.8E-14 91.9 6.3 82 31-130 17-98 (176)
121 2ell_A Acidic leucine-rich nuc 98.9 2.1E-09 7.1E-14 88.7 7.5 81 176-265 23-105 (168)
122 1w8a_A SLIT protein; signaling 98.9 9.1E-09 3.1E-13 86.9 11.3 102 8-130 11-112 (192)
123 3sb4_A Hypothetical leucine ri 98.9 2.9E-08 9.8E-13 91.2 14.3 101 228-343 225-327 (329)
124 2wfh_A SLIT homolog 2 protein 98.8 8.6E-09 3E-13 87.1 9.0 119 8-150 13-137 (193)
125 2je0_A Acidic leucine-rich nuc 98.8 2.8E-09 9.4E-14 86.1 5.6 128 204-345 16-148 (149)
126 3sb4_A Hypothetical leucine ri 98.8 3.3E-08 1.1E-12 90.9 13.4 102 203-319 224-327 (329)
127 2wfh_A SLIT homolog 2 protein 98.8 6.6E-08 2.3E-12 81.6 12.3 125 36-216 13-137 (193)
128 1a9n_A U2A', U2A'; complex (nu 98.8 1.1E-08 3.7E-13 85.1 7.3 106 3-130 17-123 (176)
129 1w8a_A SLIT protein; signaling 98.8 2.9E-08 9.9E-13 83.8 9.7 107 5-131 29-137 (192)
130 2o6r_A Variable lymphocyte rec 98.8 3.8E-08 1.3E-12 81.8 9.8 102 33-150 28-135 (177)
131 4b8c_D Glucose-repressible alc 98.7 1.9E-09 6.7E-14 109.6 2.0 59 56-129 221-279 (727)
132 1dce_A Protein (RAB geranylger 98.7 2.7E-08 9.2E-13 98.2 9.3 102 5-131 441-544 (567)
133 2o6r_A Variable lymphocyte rec 98.7 1.1E-07 3.6E-12 79.0 11.5 128 34-216 8-135 (177)
134 4fdw_A Leucine rich hypothetic 98.7 4.3E-06 1.5E-10 78.8 23.4 150 175-347 224-380 (401)
135 4b8c_D Glucose-repressible alc 98.7 2.7E-08 9.2E-13 101.2 7.6 107 2-131 221-327 (727)
136 3g39_A Variable lymphocyte rec 98.6 1.5E-07 5.3E-12 77.6 9.3 103 7-131 11-113 (170)
137 2r9u_A Variable lymphocyte rec 98.6 1.6E-07 5.3E-12 77.9 9.2 103 7-131 14-116 (174)
138 1ds9_A Outer arm dynein; leuci 98.6 1.6E-09 5.4E-14 92.0 -3.2 102 28-150 43-151 (198)
139 4fdw_A Leucine rich hypothetic 98.5 1.2E-05 4.1E-10 75.7 20.7 150 176-348 202-356 (401)
140 3e4g_A ATP synthase subunit S, 98.5 4.5E-08 1.5E-12 80.6 3.0 90 230-328 62-154 (176)
141 1ds9_A Outer arm dynein; leuci 98.5 3.6E-09 1.2E-13 89.8 -4.2 147 33-235 23-180 (198)
142 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.1E-12 77.4 3.0 95 33-136 61-155 (176)
143 2r9u_A Variable lymphocyte rec 98.4 9.1E-07 3.1E-11 73.2 7.6 84 5-104 33-116 (174)
144 3g39_A Variable lymphocyte rec 98.3 1.1E-06 3.9E-11 72.3 7.6 85 4-104 29-113 (170)
145 4fs7_A Uncharacterized protein 98.3 3.3E-05 1.1E-09 72.6 17.6 83 251-347 293-376 (394)
146 3un9_A NLR family member X1; l 98.3 2.4E-08 8.1E-13 93.4 -4.1 64 175-240 181-250 (372)
147 2ifg_A High affinity nerve gro 98.3 2.8E-06 9.4E-11 78.4 9.3 103 9-131 12-114 (347)
148 2ra8_A Uncharacterized protein 98.1 3.2E-06 1.1E-10 78.4 5.9 12 119-130 192-203 (362)
149 2ifg_A High affinity nerve gro 98.1 9.2E-06 3.2E-10 74.8 8.4 85 2-104 28-114 (347)
150 4fs7_A Uncharacterized protein 98.0 0.00071 2.4E-08 63.3 21.0 101 225-342 293-393 (394)
151 3un9_A NLR family member X1; l 97.9 3.4E-07 1.1E-11 85.5 -4.0 11 59-69 72-82 (372)
152 4gt6_A Cell surface protein; l 97.8 0.0027 9.4E-08 59.3 20.0 102 6-128 65-168 (394)
153 2ra8_A Uncharacterized protein 97.8 2.3E-05 7.9E-10 72.6 5.5 116 3-132 137-264 (362)
154 4gt6_A Cell surface protein; l 96.9 0.042 1.5E-06 51.1 17.4 107 1-129 83-191 (394)
155 3rw6_A Nuclear RNA export fact 96.8 0.00041 1.4E-08 61.1 2.3 87 31-128 168-259 (267)
156 1io0_A Tropomodulin; LRR prote 96.8 0.00016 5.4E-09 60.2 -0.7 12 58-69 64-75 (185)
157 3rw6_A Nuclear RNA export fact 96.7 0.0012 4.2E-08 58.0 4.7 67 56-133 167-233 (267)
158 4h09_A Hypothetical leucine ri 96.7 0.37 1.3E-05 44.2 23.2 76 5-101 46-121 (379)
159 1io0_A Tropomodulin; LRR prote 96.6 0.00043 1.5E-08 57.5 0.4 12 93-104 65-76 (185)
160 4h09_A Hypothetical leucine ri 96.1 0.79 2.7E-05 41.9 20.7 126 204-347 216-343 (379)
161 3rfe_A Platelet glycoprotein I 88.9 0.54 1.8E-05 36.0 4.8 34 34-69 32-65 (130)
162 3rfe_A Platelet glycoprotein I 85.7 0.65 2.2E-05 35.5 3.6 52 37-104 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 79.2 0.49 1.7E-05 39.2 0.6 93 31-130 39-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 60.3 2.3 7.9E-05 35.1 0.6 64 175-239 68-136 (197)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=3.9e-21 Score=182.09 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=177.2
Q ss_pred CCCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
++++++|++.++ .+..+ |.. +..+++|++|++++| .+.++++.. ++.+++|++|++++| .+..+++....
T Consensus 44 l~~l~~l~l~~~-~l~~l----~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~- 114 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQ- 114 (390)
T ss_dssp GCCCSEEEEESC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred cCCceEEEecCC-chhhC----ChhHhcccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHhc-
Confidence 456666666666 45554 432 245666666666666 455554332 346666666666666 55555443322
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 156 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~ 156 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++. ++.++ .++|++|+++++.....+
T Consensus 115 --------~l~~L~~L~L~~n~-l~~l~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 181 (390)
T 3o6n_A 115 --------NVPLLTVLVLERND-LSSLPR--GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD- 181 (390)
T ss_dssp --------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred --------CCCCCCEEECCCCc-cCcCCH--HHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc-
Confidence 55666666666654 444543 122456666666666643 22221 244666666655432211
Q ss_pred cccccccCCcccc------cCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCC
Q 016694 157 EENFFLTDQIQPL------FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 230 (384)
Q Consensus 157 ~~~~~~~~~l~~l------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 230 (384)
...+..+..+ +...+..++|++|+++++ .+..++. ..+++|+.|+++++. ++.. ..+..+++
T Consensus 182 ---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~~~~~------~~~~~L~~L~l~~n~-l~~~-~~l~~l~~ 249 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNYPG 249 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCCEEEC------CCCSSCCEEECCSSC-CCCC-GGGGGCTT
T ss_pred ---cccccccceeecccccccccCCCCcceEEECCCC-eeeeccc------cccccccEEECCCCC-Cccc-HHHcCCCC
Confidence 0000000000 000113456777777765 3443322 335789999999864 5554 46778899
Q ss_pred cCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCccc
Q 016694 231 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 310 (384)
Q Consensus 231 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 310 (384)
|++|+++++. ++.+. +..+..+++|++|+++++ .+..++.. . ..+++|++|+++++ .++.++. ...
T Consensus 250 L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~-~-------~~l~~L~~L~L~~n-~l~~~~~--~~~ 315 (390)
T 3o6n_A 250 LVEVDLSYNE-LEKIM-YHPFVKMQRLERLYISNN-RLVALNLY-G-------QPIPTLKVLDLSHN-HLLHVER--NQP 315 (390)
T ss_dssp CSEEECCSSC-CCEEE-SGGGTTCSSCCEEECCSS-CCCEEECS-S-------SCCTTCCEEECCSS-CCCCCGG--GHH
T ss_pred ccEEECCCCc-CCCcC-hhHccccccCCEEECCCC-cCcccCcc-c-------CCCCCCCEEECCCC-cceecCc--ccc
Confidence 9999999975 55542 345678899999999985 46655432 1 23889999999987 5666644 356
Q ss_pred CCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 311 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 311 ~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
.+++|++|++++|+ ++.++ +..+++|+++++++|
T Consensus 316 ~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 316 QFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp HHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred ccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCC
Confidence 78999999999985 66666 455889999999998
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=3.4e-21 Score=179.51 Aligned_cols=207 Identities=13% Similarity=0.214 Sum_probs=126.8
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|++.++ .+..+ + .+..+++|++|++++| +++++++ +.++++|++|++++| .+..++.-
T Consensus 42 ~l~~L~~L~l~~~-~i~~~----~-~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~---- 106 (347)
T 4fmz_A 42 ELESITKLVVAGE-KVASI----Q-GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDISAL---- 106 (347)
T ss_dssp HHTTCSEEECCSS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGG----
T ss_pred hcccccEEEEeCC-ccccc----h-hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCchHH----
Confidence 4578899999988 56554 3 3678899999999988 7777655 568899999999998 77766421
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEEecCCCCccccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 158 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~i~~~~~~~~~~~~ 158 (384)
. .+++|++|+++++. ++.++. ...+++|+.|++++|......+ .++|++|.+.++.....+.
T Consensus 107 ---~----~l~~L~~L~l~~n~-i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-- 172 (347)
T 4fmz_A 107 ---Q----NLTNLRELYLNEDN-ISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-- 172 (347)
T ss_dssp ---T----TCTTCSEEECTTSC-CCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred ---c----CCCcCCEEECcCCc-ccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--
Confidence 1 77889999998876 555543 5678889999998887665543 4568888888765432211
Q ss_pred cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694 159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 238 (384)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 238 (384)
.+.+++|++|+++++ .+..+.. ...+++|+.|+++++ .+..++. +..+++|++|++++
T Consensus 173 --------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 173 --------------IANLTDLYSLSLNYN-QIEDISP-----LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp --------------GGGCTTCSEEECTTS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred --------------hccCCCCCEEEccCC-ccccccc-----ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccC
Confidence 124556666666655 2222211 234445555555543 2332222 34445555555555
Q ss_pred CCCCeeecccccccccCcccEEeecc
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIAD 264 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~ 264 (384)
|. ++.++. +..+++|++|++++
T Consensus 231 n~-l~~~~~---~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 231 NK-ITDLSP---LANLSQLTWLEIGT 252 (347)
T ss_dssp SC-CCCCGG---GTTCTTCCEEECCS
T ss_pred Cc-cCCCcc---hhcCCCCCEEECCC
Confidence 42 333211 33445555555554
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1.9e-20 Score=180.80 Aligned_cols=314 Identities=14% Similarity=0.103 Sum_probs=204.0
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+ .|..++.+++|++|++++|.....+++ ..++++++|++|++++| .+..+.+....
T Consensus 30 ~~l~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~--- 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN-QFLQLETGAFN--- 100 (455)
T ss_dssp TTCCEEECCSS-CCCEE---CTTTTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC-TTCEECTTTTT---
T ss_pred CccCEEEecCC-ccCcC---ChhHhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC-ccCccChhhcc---
Confidence 57899999998 56553 156678899999999999843334433 33578899999999998 77777554432
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccc-cc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT-SE 157 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~-~~ 157 (384)
.+++|++|+++++..-..++. ......+++|++|+++++......| .++|++|+++++...... ..
T Consensus 101 ------~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 101 ------GLANLEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp ------TCTTCCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred ------CcccCCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence 678888888888863222333 2235668888888888864322212 456888888777654321 11
Q ss_pred ccc--------ccc--CCccccc---------CCccccCCccEEecccccc----------------cccccccc-----
Q 016694 158 ENF--------FLT--DQIQPLF---------DEKVAFPQLRYLELSRLHK----------------VQHLWKEN----- 197 (384)
Q Consensus 158 ~~~--------~~~--~~l~~l~---------~~~~~~~~L~~L~l~~~~~----------------l~~l~~~~----- 197 (384)
..- ... ..+..+. .....+++|++|+++++.- ++.+...+
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 100 000 0011100 0011346778888777621 11111000
Q ss_pred -------cc-----c--ccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeec
Q 016694 198 -------DE-----S--NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 263 (384)
Q Consensus 198 -------~~-----~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 263 (384)
+. . ....++|+.|+++++......|..+..+++|++|+++++. ++.+. +..+..+++|++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKID-DNAFWGLTHLLKLNLS 331 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECC
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccC-hhHhcCcccCCEEECC
Confidence 00 0 0123689999999876555566678889999999999975 55542 3356788999999999
Q ss_pred ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeee
Q 016694 264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKV 342 (384)
Q Consensus 264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l 342 (384)
+| .+..+... ....+++|++|+++++ .++.+... .+..+++|++|++++| .++.+|.+. ..+++|+++
T Consensus 332 ~N-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 332 QN-FLGSIDSR-------MFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp SS-CCCEECGG-------GGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CC-ccCCcChh-------HhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 96 45655432 1223899999999986 56666443 3678999999999997 567777654 578999999
Q ss_pred ccCCC
Q 016694 343 KPTEE 347 (384)
Q Consensus 343 ~i~~~ 347 (384)
++++|
T Consensus 401 ~l~~N 405 (455)
T 3v47_A 401 WLHTN 405 (455)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 99999
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.4e-21 Score=200.94 Aligned_cols=239 Identities=15% Similarity=0.049 Sum_probs=138.0
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+++|++|+++++.-...+ |..++.+++|++|++++| ++.+..|...++++++|++|++++| .+.+..+....
T Consensus 293 ~~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~-- 364 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAV----PPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLT-- 364 (768)
T ss_dssp CTTCSEEECCSSEEEECC----CGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSS-EEEECCCTTHH--
T ss_pred cCcCCEEECcCCcCCCcc----chHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCC-ccCccccHHHH--
Confidence 589999999999432234 777889999999999998 5564445555678999999999999 66533332211
Q ss_pred cccccCCccc-ccceeccCccccccccccCcccccC--CCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc-c
Q 016694 84 DKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENIIE--MPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-L 154 (384)
Q Consensus 84 ~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~--~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~-~ 154 (384)
.++ +|++|+++++.....++. .... +++|++|++++|.....+| .++|++|+++++.... .
T Consensus 365 -------~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 365 -------NLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp -------HHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred -------hhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 233 555555555542222222 1111 3444444444442211111 2334444444433221 1
Q ss_pred cccc---------cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc
Q 016694 155 TSEE---------NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 225 (384)
Q Consensus 155 ~~~~---------~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 225 (384)
+..+ .+..+.-...++...+.+++|++|+++++.-...++.. ...+++|++|++++|.....+|..+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHH
Confidence 1000 00011111122333446778888888877322222221 3567888888888876555777777
Q ss_pred ccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694 226 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 226 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
..+++|++|++++|.-...+ +..+..+++|++|++++|.
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSE
T ss_pred hcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCc
Confidence 88888888888887533343 4456778888888888764
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.4e-20 Score=175.28 Aligned_cols=278 Identities=17% Similarity=0.237 Sum_probs=210.9
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|++|+++++ .+..+ +. +..+++|++|++++| .++.++ . ++++++|++|++++| .+..+++..
T Consensus 63 ~~~~~L~~L~l~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~i~~~~-~--~~~l~~L~~L~l~~n-~i~~~~~~~-- 129 (347)
T 4fmz_A 63 EYLTNLEYLNLNGN-QITDI----SP-LSNLVKLTNLYIGTN-KITDIS-A--LQNLTNLRELYLNED-NISDISPLA-- 129 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCG-G--GTTCTTCSEEECTTS-CCCCCGGGT--
T ss_pred hhcCCccEEEccCC-ccccc----hh-hhcCCcCCEEEccCC-cccCch-H--HcCCCcCCEEECcCC-cccCchhhc--
Confidence 45789999999999 66665 44 788999999999998 777763 2 579999999999999 787775522
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEE 158 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~ 158 (384)
.+++|++|+++++.....++. ...+++|++|++++|......+ .++|++|+++++....++
T Consensus 130 ---------~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--- 193 (347)
T 4fmz_A 130 ---------NLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS--- 193 (347)
T ss_dssp ---------TCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG---
T ss_pred ---------cCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc---
Confidence 789999999999976665543 6789999999999975432222 567999999876632211
Q ss_pred cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694 159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 238 (384)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 238 (384)
. .+.+++|+.|+++++ .+..+.. ...+++|++|++++| .++.++. +..+++|++|++++
T Consensus 194 ---------~----~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 194 ---------P----LASLTSLHYFTAYVN-QITDITP-----VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp ---------G----GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred ---------c----ccCCCccceeecccC-CCCCCch-----hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCC
Confidence 1 236889999999987 4444321 367899999999997 4666655 78899999999999
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV 318 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L 318 (384)
|. ++.+ ..+..+++|++|++++| .+..+. ....+++|++|++++|. ++..... .+..+++|++|
T Consensus 253 n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L 316 (347)
T 4fmz_A 253 NQ-ISDI---NAVKDLTKLKMLNVGSN-QISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTL 316 (347)
T ss_dssp SC-CCCC---GGGTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEE
T ss_pred Cc-cCCC---hhHhcCCCcCEEEccCC-ccCCCh---------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCCEE
Confidence 84 6554 34678899999999996 455442 12238999999999974 4444321 25679999999
Q ss_pred EeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 319 VVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 319 ~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
++++|+ ++.++. +..+++|+++++++|
T Consensus 317 ~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 317 FLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp ECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred EccCCc-cccccC-hhhhhccceeehhhh
Confidence 999996 555554 667999999999998
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=2.1e-21 Score=199.58 Aligned_cols=310 Identities=11% Similarity=0.008 Sum_probs=206.6
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|++|+++++.-...+ |..++.+++|++|++++| .+.+..+. ..+++|++|++++| .+.+..+....
T Consensus 220 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~~L~L~~n-~l~~~ip~~~~ 290 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLSGDF----SRAISTCTELKLLNISSN-QFVGPIPP---LPLKSLQYLSLAEN-KFTGEIPDFLS 290 (768)
T ss_dssp TTCCSCCEEECCSSCCCSCH----HHHTTTCSSCCEEECCSS-CCEESCCC---CCCTTCCEEECCSS-EEEESCCCCSC
T ss_pred ccCCCCCEEECcCCcCCCcc----cHHHhcCCCCCEEECCCC-cccCccCc---cccCCCCEEECcCC-ccCCccCHHHH
Confidence 46789999999999433344 666788999999999998 55655454 27899999999999 66633332211
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCc-cc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPE-KL 154 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~-~~ 154 (384)
..+++|++|+++++.....++. ....+++|++|++++|.....+| .++|++|+++++... .+
T Consensus 291 --------~~~~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 291 --------GACDTLTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp --------TTCTTCSEEECCSSEEEECCCG---GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred --------hhcCcCCEEECcCCcCCCccch---HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 1357888888888874434444 56678888888888865432333 456888888776543 22
Q ss_pred cccc-------ccc---ccCCcccccCCccc--cCCccEEecccccccccccccccccccccccccEEeeccCccccccc
Q 016694 155 TSEE-------NFF---LTDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV 222 (384)
Q Consensus 155 ~~~~-------~~~---~~~~l~~l~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 222 (384)
+..+ ..+ .+.-...++...+. +++|++|+++++.-...++.. ...+++|++|++++|.....+|
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCC
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCccc
Confidence 2111 000 01000111222222 567888888777322222221 3677889999998876555677
Q ss_pred CCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCce
Q 016694 223 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 302 (384)
Q Consensus 223 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 302 (384)
..+..+++|+.|++++|.-...+ +..+..+++|++|++++|.....++. ....+++|++|+++++.--..
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIPS--------GLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCCSC
T ss_pred HHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcCCH--------HHhcCCCCCEEEccCCccCCc
Confidence 77888889999999987633333 44567788999999988653222221 222378899999988754334
Q ss_pred ecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 303 FCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 303 l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
++. .+..+++|++|++++|.....+|..+..+++|+++++++|
T Consensus 506 ~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 506 IPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 433 3677899999999999776688988888999999999988
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1e-19 Score=182.20 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=50.1
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ .|..++.+++|++|++++| +++..++.. ++++++|++|++++| .+..+.+....
T Consensus 55 ~l~~L~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~l~~~~~~- 126 (606)
T 3t6q_A 55 RLINLTFLDLTRC-QIYWI---HEDTFQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQT-GISSIDFIPLH- 126 (606)
T ss_dssp TCTTCSEEECTTC-CCCEE---CTTTTTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTS-CCSCGGGSCCT-
T ss_pred cCccceEEECCCC-cccee---ChhhccCccccCeeeCCCC-cccccChhh-hcccccccEeecccc-CcccCCcchhc-
Confidence 3455555555555 23322 1334455555555555555 344443322 345555555555555 44443222211
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++
T Consensus 127 --------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 127 --------NQKTLESLYLGSNH-ISSIKL--PKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp --------TCTTCCEEECCSSC-CCCCCC--CTTCCCTTCCEEECCSS
T ss_pred --------cCCcccEEECCCCc-ccccCc--ccccCCcccCEEEcccC
Confidence 45566666666554 333321 01222556666666554
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=3.1e-20 Score=180.54 Aligned_cols=293 Identities=17% Similarity=0.149 Sum_probs=214.7
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
+++++|+++++ .+..+ .+..+..+++|++|++++| .++.+.+.. ++++++|++|++++| .+..++.....
T Consensus 32 ~~l~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~--- 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTL---NQDEFASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPLGVFT--- 101 (477)
T ss_dssp TTCSEEECCSS-CCCEE---CTTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCSCCTTSST---
T ss_pred CCCcEEECCCC-ccceE---CHhHccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cCCccCccccc---
Confidence 57899999998 56664 1456788999999999988 777775544 568999999999998 78877655432
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEE 158 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~ 158 (384)
.+++|++|+++++. ++.+.. .....+++|++|+++++. ++.++ .++|++|+++++....++.
T Consensus 102 ------~l~~L~~L~Ls~n~-i~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 169 (477)
T 2id5_A 102 ------GLSNLTKLDISENK-IVILLD--YMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPT-- 169 (477)
T ss_dssp ------TCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCH--
T ss_pred ------CCCCCCEEECCCCc-cccCCh--hHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccCh--
Confidence 67899999999887 444432 255678899999998864 33322 4578899888765322110
Q ss_pred cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeec
Q 016694 159 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 238 (384)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 238 (384)
. .++.+++|+.|+++++ .+..+.... ...+++|++|++++|+.+..++.......+|++|++++
T Consensus 170 ---------~---~l~~l~~L~~L~l~~n-~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 233 (477)
T 2id5_A 170 ---------E---ALSHLHGLIVLRLRHL-NINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233 (477)
T ss_dssp ---------H---HHTTCTTCCEEEEESC-CCCEECTTC---SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred ---------h---HhcccCCCcEEeCCCC-cCcEeChhh---cccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence 0 1236889999999887 444433221 36788999999999988888888777777999999999
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEE
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV 318 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L 318 (384)
+. ++.++ ...+..+++|++|+++++. +..+... ....+++|+.|+++++ .++.+... .+..+++|++|
T Consensus 234 n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L 301 (477)
T 2id5_A 234 CN-LTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVL 301 (477)
T ss_dssp SC-CCSCC-HHHHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEE
T ss_pred Cc-ccccC-HHHhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCC-ccceECHH-HhcCcccCCEE
Confidence 74 66552 2345788999999999854 6655432 1223889999999885 56666443 36789999999
Q ss_pred EeccCCCCCccCCCC-cCCCCCeeeccCCCC
Q 016694 319 VVRQCPTMKIFSQGV-VDAPKLNKVKPTEEE 348 (384)
Q Consensus 319 ~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~~ 348 (384)
++++| .++.+|... ..+++|+++++++|+
T Consensus 302 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 302 NVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 99998 567777653 568899999999983
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.2e-20 Score=186.62 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=106.2
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 254 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l 254 (384)
..++|+.|+++++ .+..++. ...++|+.|+++++. ++.. ..+..+++|+.|+++++. +..+. +..+..+
T Consensus 209 ~~~~L~~L~ls~n-~l~~~~~------~~~~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l 277 (597)
T 3oja_B 209 IPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIM-YHPFVKM 277 (597)
T ss_dssp CCTTCSEEECCSS-CCCEEEC------SCCSCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEE-SGGGTTC
T ss_pred CCchhheeeccCC-ccccccc------ccCCCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCc-cCCCC-HHHhcCc
Confidence 3556777777776 3444322 234689999999874 4443 567889999999999975 55442 4456788
Q ss_pred CcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCc
Q 016694 255 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 334 (384)
Q Consensus 255 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 334 (384)
++|+.|+++++ .+..++.. . ..+++|+.|+++++ .++.++. ....+++|++|++++|. +..+| +.
T Consensus 278 ~~L~~L~Ls~N-~l~~l~~~-~-------~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--~~ 342 (597)
T 3oja_B 278 QRLERLYISNN-RLVALNLY-G-------QPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK--LS 342 (597)
T ss_dssp SSCCEEECTTS-CCCEEECS-S-------SCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred cCCCEEECCCC-CCCCCCcc-c-------ccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCcC--hh
Confidence 99999999985 46655433 1 23889999999986 5566543 35678999999999985 55666 34
Q ss_pred CCCCCeeeccCCC
Q 016694 335 DAPKLNKVKPTEE 347 (384)
Q Consensus 335 ~~~~L~~l~i~~~ 347 (384)
.+++|+++++++|
T Consensus 343 ~~~~L~~L~l~~N 355 (597)
T 3oja_B 343 THHTLKNLTLSHN 355 (597)
T ss_dssp TTCCCSEEECCSS
T ss_pred hcCCCCEEEeeCC
Confidence 5889999999998
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-20 Score=189.19 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|++|+++++ .+..+ .|..+..+++|++|++++| .++..+|.. ++++++|++|++++| .+..+++....
T Consensus 53 ~~l~~L~~L~Ls~n-~l~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~ 125 (606)
T 3vq2_A 53 SNFSELQWLDLSRC-EIETI---EDKAWHGLHHLSNLILTGN-PIQSFSPGS-FSGLTSLENLVAVET-KLASLESFPIG 125 (606)
T ss_dssp TTCTTCCEEECTTC-CCCEE---CTTTTTTCTTCCEEECTTC-CCCCCCTTS-STTCTTCCEEECTTS-CCCCSSSSCCT
T ss_pred cCCccCcEEeCCCC-ccccc---CHHHhhchhhcCEeECCCC-cccccChhh-cCCcccCCEEEccCC-ccccccccccC
Confidence 34566666666666 34443 1334556666666666666 455553332 356666666666666 55544432221
Q ss_pred cccccccCCcccccceeccCcccccc--ccccCcccccCCCCceeEeeccC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLK--RFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++ .+|. ....+++|++|+++++
T Consensus 126 ---------~l~~L~~L~L~~n~-l~~~~lp~---~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 126 ---------QLITLKKLNVAHNF-IHSCKLPA---YFSNLTNLVHVDLSYN 163 (606)
T ss_dssp ---------TCTTCCEEECCSSC-CCCCCCCG---GGGTCTTCCEEECCSS
T ss_pred ---------CCCCCCEEeCCCCc-ccceechH---hHhhcCCCCEEEccCC
Confidence 44555555555554 22 1222 3445555555555553
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=3.6e-20 Score=185.39 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=101.3
Q ss_pred cccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccc
Q 016694 174 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 253 (384)
Q Consensus 174 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 253 (384)
+.+++|+.|+++++. +..+.. ......+++|++|++++|......|..+..+++|++|++++|. +.....+..+..
T Consensus 396 ~~l~~L~~L~l~~n~-l~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 471 (606)
T 3vq2_A 396 MGLEELQHLDFQHST-LKRVTE--FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFAN 471 (606)
T ss_dssp TTCTTCCEEECTTSE-EESTTT--TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTT
T ss_pred cCCCCCCeeECCCCc-cCCccC--hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhcc
Confidence 345555555555542 222111 0112456777777777765544555566777778888877764 332112445567
Q ss_pred cCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC
Q 016694 254 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 333 (384)
Q Consensus 254 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~ 333 (384)
+++|++|++++| .+..++.. ....+++|++|+++++ .++.+... .+..+++|++|++++|. ++.+|..+
T Consensus 472 l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~ 540 (606)
T 3vq2_A 472 TTNLTFLDLSKC-QLEQISWG-------VFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGIL 540 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTT-------TTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESCG
T ss_pred CCCCCEEECCCC-cCCccChh-------hhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHhH
Confidence 788888888875 34444322 1223788889999887 45554322 36678999999999985 77899887
Q ss_pred cCCC-CCeeeccCCCC
Q 016694 334 VDAP-KLNKVKPTEEE 348 (384)
Q Consensus 334 ~~~~-~L~~l~i~~~~ 348 (384)
..++ +|+++++++|+
T Consensus 541 ~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNS 556 (606)
T ss_dssp GGSCTTCCEEECCSCC
T ss_pred hhhcccCcEEEccCCC
Confidence 7776 59999999983
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.3e-19 Score=179.51 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=32.1
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
+++|++|++++| .++.+... .+..+++|++|++++|......|..+..+++| ++++++|
T Consensus 475 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 475 LGRLEILVLSFC-DLSSIDQH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCCccEEECCCC-ccCccChh-hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 556666666654 34444322 24456666666666664333444445556666 6666665
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.7e-19 Score=176.87 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=94.1
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCccccccc---CCcccCCCcCEEEeecCCCCeeecccccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLSTS 251 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 251 (384)
.+++|+.|+++++.-...++.. ......+++|++|++++| .++.++ ..+..+++|++|++++| .++.+ +..+
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--p~~~ 406 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM--PDSC 406 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC--CSCC
T ss_pred cCccccEEEccCCccccccccc-hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC--Chhh
Confidence 3566777777665321111000 000134556666666654 233332 12445556666666655 24433 2233
Q ss_pred cccCcccEEeecccccccEecccc----------cCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 016694 252 ESLVNLGRMKIADCKMIEQIIQLQ----------VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 321 (384)
Q Consensus 252 ~~l~~L~~L~l~~c~~l~~~~~~~----------~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~ 321 (384)
..+++|++|++++|. +..++..- ..........+++|++|+++++ +++.++. ...+++|++|+++
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls 481 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKIS 481 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECC
T ss_pred cccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC---cccCccCCEEecC
Confidence 444555555555532 22221100 0000000113788888888876 6666654 4568999999999
Q ss_pred cCCCCCccCCC-CcCCCCCeeeccCCCCCCCCccccCCchH--HHHHHHHhh
Q 016694 322 QCPTMKIFSQG-VVDAPKLNKVKPTEEEDGDDEGCWEGNLN--DTIKKLFNE 370 (384)
Q Consensus 322 ~c~~l~~lp~~-~~~~~~L~~l~i~~~~~~~~~~~~~~~~~--~~i~~~~~~ 370 (384)
+| .++.+|.+ +..+++|+++++++| .|.++.+ ..++.+...
T Consensus 482 ~N-~l~~~~~~~~~~l~~L~~L~l~~N-------~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 482 RN-QLKSVPDGIFDRLTSLQKIWLHTN-------PWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp SS-CCCCCCTTGGGGCTTCCEEECCSS-------CBCCCHHHHHHHHHHHHH
T ss_pred CC-ccCCcCHHHHhcCcccCEEEecCC-------CccCCCccHHHHHHHHHh
Confidence 98 45555544 667899999999999 4566554 334445443
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.5e-19 Score=175.22 Aligned_cols=292 Identities=13% Similarity=0.210 Sum_probs=171.7
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ ++ +..+++|++|++++| .+.+.++ ++++++|++|++++| .+.++++..
T Consensus 66 ~l~~L~~L~Ls~n-~l~~~----~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~--- 131 (466)
T 1o6v_A 66 YLNNLTQINFSNN-QLTDI----TP-LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDIDPLK--- 131 (466)
T ss_dssp GCTTCCEEECCSS-CCCCC----GG-GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGT---
T ss_pred hhcCCCEEECCCC-ccCCc----hh-hhccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCCCChHHc---
Confidence 4567777777777 45543 33 566677777777766 5555543 356666777776666 555554311
Q ss_pred ccccccCCcccccceeccCccccccccccC-----------------cccccCCCCceeEeeccCCCccccc----CCCe
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNF-----------------TENIIEMPELRYLAIENCPDMETFI----SNSV 141 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L 141 (384)
.+++|++|+++++. +..++.. ......+++|+.|++++|. ++.++ .++|
T Consensus 132 --------~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L 201 (466)
T 1o6v_A 132 --------NLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNL 201 (466)
T ss_dssp --------TCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTC
T ss_pred --------CCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCC
Confidence 44555555554443 2221110 0124567778888877764 33222 4567
Q ss_pred eEEEecCCCCccccc-----cc---cccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeec
Q 016694 142 VHVTTDNKEPEKLTS-----EE---NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKIS 213 (384)
Q Consensus 142 ~~L~i~~~~~~~~~~-----~~---~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~ 213 (384)
++|+++++....... .. .+..+ .+..+ ...+.+++|+.|+++++ .+..+. ....+++|++|+++
T Consensus 202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 202 ESLIATNNQISDITPLGILTNLDELSLNGN-QLKDI-GTLASLTNLTDLDLANN-QISNLA-----PLSGLTKLTELKLG 273 (466)
T ss_dssp SEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCCCCG-----GGTTCTTCSEEECC
T ss_pred CEEEecCCcccccccccccCCCCEEECCCC-Ccccc-hhhhcCCCCCEEECCCC-ccccch-----hhhcCCCCCEEECC
Confidence 777777665433211 00 00000 11111 12235677777777766 333321 13567778888887
Q ss_pred cCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceee
Q 016694 214 ECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLG 293 (384)
Q Consensus 214 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 293 (384)
++ .+..++. +..+++|+.|++++|. ++.+.. +..+++|++|++++|. +..+.. ...+++|++|+
T Consensus 274 ~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~L~~L~ 337 (466)
T 1o6v_A 274 AN-QISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDISP---------VSSLTKLQRLF 337 (466)
T ss_dssp SS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCGG---------GGGCTTCCEEE
T ss_pred CC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCchh---------hccCccCCEeE
Confidence 76 3555544 6677888888888864 554422 4677888888888864 433321 12378899999
Q ss_pred cccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 294 LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 294 l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
+++| .++.+. ....+++|++|++++|+.....| +..+++|+.+++++|.
T Consensus 338 l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 338 FYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 9886 566653 26678999999999886544444 5668899999998873
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.5e-20 Score=172.39 Aligned_cols=230 Identities=21% Similarity=0.249 Sum_probs=133.4
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+++.|+++++ +++.+++. ++++++|++|++++| .+..++.... .+++|++|+++++. ++.+|.
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~--l~~l~~L~~L~L~~n-~l~~lp~~~~----------~l~~L~~L~Ls~n~-l~~lp~- 144 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQ--AFRLSHLQHMTIDAA-GLMELPDTMQ----------QFAGLETLTLARNP-LRALPA- 144 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSC--GGGGTTCSEEEEESS-CCCCCCSCGG----------GGTTCSEEEEESCC-CCCCCG-
T ss_pred cceeEEEccCC-CchhcChh--hhhCCCCCEEECCCC-CccchhHHHh----------ccCCCCEEECCCCc-cccCcH-
Confidence 45666666665 44544332 345666666666666 4554433221 45566666666554 444544
Q ss_pred cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccc
Q 016694 113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 192 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 192 (384)
.+..+++|++|++++|.....+|.. +....+ ...++.+++|+.|+++++ .+..
T Consensus 145 --~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~-----------------------~~~~~~l~~L~~L~L~~n-~l~~ 197 (328)
T 4fcg_A 145 --SIASLNRLRELSIRACPELTELPEP-LASTDA-----------------------SGEHQGLVNLQSLRLEWT-GIRS 197 (328)
T ss_dssp --GGGGCTTCCEEEEEEETTCCCCCSC-SEEEC------------------------CCCEEESTTCCEEEEEEE-CCCC
T ss_pred --HHhcCcCCCEEECCCCCCccccChh-Hhhccc-----------------------hhhhccCCCCCEEECcCC-CcCc
Confidence 4555666666666666554433211 000000 001124677777777766 4444
Q ss_pred ccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694 193 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 272 (384)
Q Consensus 193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 272 (384)
++.. ...+++|++|++++| .++.+|..+..+++|++|++++|+....+ +..+..+++|++|++++|.....++
T Consensus 198 lp~~----l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 198 LPAS----IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCGG----GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred chHh----hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhcc
Confidence 3322 356677777777775 45566666777777788877777655554 4455677778888887776555443
Q ss_pred ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694 273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322 (384)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~ 322 (384)
.. ...+++|++|++++|+.++.++. .+..+++|+.+.+..
T Consensus 271 ~~--------~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 LD--------IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp TT--------GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred hh--------hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 22 12267788888888777777665 366777887777654
No 16
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.6e-19 Score=172.92 Aligned_cols=285 Identities=14% Similarity=0.114 Sum_probs=167.7
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ | .++.+++|++|++++| ++++++ ++.+++|++|++++| .+.+++ .
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~----~-~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--~--- 102 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDM----T-GIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD--V--- 102 (457)
T ss_dssp HHTTCCEEECCSS-CCCCC----T-TGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC--C---
T ss_pred HcCCCCEEEccCC-CcccC----h-hhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee--c---
Confidence 3577888888887 55554 4 4677888888888887 566653 357788888888887 666552 1
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCC-cccc--c
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEP-EKLT--S 156 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~-~~~~--~ 156 (384)
. .+++|++|+++++. ++.++ +..+++|++|+++++. ++.++ .+.|++|+++.+.. ..++ .
T Consensus 103 ---~----~l~~L~~L~L~~N~-l~~l~-----~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (457)
T 3bz5_A 103 ---T----PLTKLTYLNCDTNK-LTKLD-----VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTP 168 (457)
T ss_dssp ---T----TCTTCCEEECCSSC-CSCCC-----CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTT
T ss_pred ---C----CCCcCCEEECCCCc-CCeec-----CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccccccc
Confidence 1 56677777777664 44443 3456666666666542 33333 23455666555421 0000 0
Q ss_pred --ccccc--ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcC
Q 016694 157 --EENFF--LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLA 232 (384)
Q Consensus 157 --~~~~~--~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 232 (384)
....+ +...+..+. .+.+++|+.|+++++ .+..+. ...+++|+.|+++++ .++.+| +..+++|+
T Consensus 169 l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~~------l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~ 236 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD------LNQNIQLTFLDCSSN-KLTEID--VTPLTQLT 236 (457)
T ss_dssp CTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCCC------CTTCTTCSEEECCSS-CCSCCC--CTTCTTCS
T ss_pred CCcCCEEECCCCccceec--cccCCCCCEEECcCC-cCCeec------cccCCCCCEEECcCC-cccccC--ccccCCCC
Confidence 00000 000111111 235666777777665 344331 255678888888875 455564 66778888
Q ss_pred EEEeecCCCCeeecccccccccCcccEEeec----------ccccccEecccccCccccceeeecccceeecccCCCCce
Q 016694 233 TLEVSKCHGLINVLTLSTSESLVNLGRMKIA----------DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 302 (384)
Q Consensus 233 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~----------~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 302 (384)
.|+++++. ++.++ ...+++|+.|+++ +|..+..++. ..+++|+.|++++|+.++.
T Consensus 237 ~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----------~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 237 YFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----------EGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp EEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----------TTCTTCCCCCCTTCTTCCE
T ss_pred EEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----------cccccCCEEECCCCcccce
Confidence 88888764 55442 2345555554444 3333332221 1368899999988877666
Q ss_pred ecCCC------cccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 303 FCLGN------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 303 l~~~~------~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
++... .+..+++|++|++++| +++.++ +..+++|++++++++.
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred eccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 54321 1345678888888876 455564 5668899999998884
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.4e-20 Score=189.39 Aligned_cols=324 Identities=12% Similarity=0.153 Sum_probs=176.8
Q ss_pred CCCCCCceEecCCCcCcce-----eccc---------CCCCCC--CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEE
Q 016694 2 IGFRDIKYLQLGHFPRLQE-----IWHG---------QALPVS--FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 65 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~-----i~~~---------~p~~i~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 65 (384)
..+++|++|+++++. +.. .|.. .|+.++ .+++|++|++++|. +.+..|.. ++++++|++|+
T Consensus 203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTT-TTTCSSCCEEE
T ss_pred hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHH-HhcCCCCCEEE
Confidence 457899999999985 544 0100 288888 99999999999984 44443433 57899999999
Q ss_pred EecccCcce--ecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CC
Q 016694 66 VRNCDSLEE--VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SN 139 (384)
Q Consensus 66 l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~ 139 (384)
+++|..+.. +|.......... .+++|++|+++++. ++.+|. ...+..+++|++|+++++..-..+| .+
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~----~l~~L~~L~L~~n~-l~~ip~-~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~ 353 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAP----VGEKIQIIYIGYNN-LKTFPV-ETSLQKMKKLGMLECLYNQLEGKLPAFGSEI 353 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSG----GGGTCCEEECCSSC-CSSCCC-HHHHTTCTTCCEEECCSCCCEEECCCCEEEE
T ss_pred CcCCCCCccccchHHHHhhhccc----cCCCCCEEECCCCc-CCccCc-hhhhccCCCCCEEeCcCCcCccchhhhCCCC
Confidence 999932664 443221000001 24789999998886 555543 1246678888999888864322444 24
Q ss_pred CeeEEEecCCCCccccccc-------cccc--cCCcccccCCccc--cCCccEEecccccccccccccccc----ccccc
Q 016694 140 SVVHVTTDNKEPEKLTSEE-------NFFL--TDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDE----SNKAF 204 (384)
Q Consensus 140 ~L~~L~i~~~~~~~~~~~~-------~~~~--~~~l~~l~~~~~~--~~~L~~L~l~~~~~l~~l~~~~~~----~~~~~ 204 (384)
+|++|.++++....++..+ ..+. ...+..+....+. +++|+.|+++++. +.......+. ....+
T Consensus 354 ~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccC
Confidence 5777777766543332111 0000 0011122222222 2255555555542 2111000010 00134
Q ss_pred ccccEEeeccCcccccccCCcc-cCCCcCEEEeecCCCCeeecccccc------cccCcccEEeecccccccEecccccC
Q 016694 205 ANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLSTS------ESLVNLGRMKIADCKMIEQIIQLQVG 277 (384)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~------~~l~~L~~L~l~~c~~l~~~~~~~~~ 277 (384)
++|++|+++++ .++.+|..+. .+++|++|+++++. ++.++..... ..+++|++|+++++ .+..++.. ..
T Consensus 433 ~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~ 508 (636)
T 4eco_A 433 INVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD-FR 508 (636)
T ss_dssp CCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG-GS
T ss_pred CCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChh-hh
Confidence 46666666664 3445554433 35666666666653 4443211110 11226667777664 34433321 11
Q ss_pred ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec------cCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR------QCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~------~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
...+++|++|+++++ .++.++. ....+++|++|+++ ++...+.+|..+..+++|+++++++|
T Consensus 509 -----~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 509 -----ATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp -----TTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred -----hccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 012667777777764 4444432 35567777777774 34345566777767777777777777
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=7.3e-20 Score=188.37 Aligned_cols=301 Identities=13% Similarity=0.082 Sum_probs=203.7
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcC-------CCCCEEEEecccCcce
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL-------NNLRWLEVRNCDSLEE 74 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l-------~~L~~L~l~~~~~l~~ 74 (384)
.+++|++|++++|.....+ |..++.+++|++|++++|..+++ ..|.. ++++ ++|++|++++| .+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~i----P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~ 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQL----PDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEE 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCSC----CGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCB
T ss_pred cCCCCCEEECcCCCCCccC----hHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCc
Confidence 6899999999999656666 88889999999999999854665 33433 3344 49999999999 7776
Q ss_pred ecc--cccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCC-eeEEEe
Q 016694 75 VLH--LEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTT 146 (384)
Q Consensus 75 ~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~i 146 (384)
+|. ... .+++|++|+++++. ++.+| ....+++|+.|+++++. ++.+| .++ |++|.+
T Consensus 563 ip~~~~l~----------~L~~L~~L~Ls~N~-l~~lp----~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 563 FPASASLQ----------KMVKLGLLDCVHNK-VRHLE----AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CCCHHHHT----------TCTTCCEEECTTSC-CCBCC----CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEEC
T ss_pred cCChhhhh----------cCCCCCEEECCCCC-cccch----hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEEC
Confidence 655 222 67788888888876 44555 35667788888888764 33444 345 788888
Q ss_pred cCCCCcccccccccccc----------CCc----ccccCCcc--ccCCccEEecccccccccccccccccccccccccEE
Q 016694 147 DNKEPEKLTSEENFFLT----------DQI----QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRL 210 (384)
Q Consensus 147 ~~~~~~~~~~~~~~~~~----------~~l----~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L 210 (384)
+++....++........ ..+ ..+....+ ..++|+.|+++++ .+..++... ...+++|+.|
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~---~~~l~~L~~L 702 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTEL---FATGSPISTI 702 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHH---HHTTCCCSEE
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHH---HccCCCCCEE
Confidence 77766544432211110 011 11111111 2347888888887 444432220 1367899999
Q ss_pred eeccCcccccccCCcccC--------CCcCEEEeecCCCCeeeccccccc--ccCcccEEeecccccccEecccccCccc
Q 016694 211 KISECSKLQKLVTPSWHL--------ENLATLEVSKCHGLINVLTLSTSE--SLVNLGRMKIADCKMIEQIIQLQVGEEA 280 (384)
Q Consensus 211 ~l~~~~~l~~l~~~~~~~--------~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 280 (384)
+++++ .+..+|...... ++|+.|++++| .++.+ +..+. .+++|+.|++++|. +..++..
T Consensus 703 ~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l--p~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------ 771 (876)
T 4ecn_A 703 ILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL--SDDFRATTLPYLSNMDVSYNC-FSSFPTQ------ 771 (876)
T ss_dssp ECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC--CGGGSTTTCTTCCEEECCSSC-CSSCCCG------
T ss_pred ECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccc--hHHhhhccCCCcCEEEeCCCC-CCccchh------
Confidence 99986 566777654432 38999999998 46655 34444 88999999999854 5444322
Q ss_pred cceeeecccceeecccCC-----C-CceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 281 KGCVVFEELGYLGLDCLP-----S-LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 281 ~~~~~~~~L~~L~l~~c~-----~-L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
...+++|+.|++++++ + ...++ ..+..+++|++|++++|.. +.+|..+. ++|+.+++++|
T Consensus 772 --l~~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 772 --PLNSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN 837 (876)
T ss_dssp --GGGCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred --hhcCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence 2248999999997743 2 22332 2367799999999999865 89998764 69999999998
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-19 Score=169.61 Aligned_cols=277 Identities=14% Similarity=0.171 Sum_probs=199.3
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ .+..+..+++|++|++++| .++..++.. ++++++|++|++++| .+..+++....
T Consensus 67 ~l~~L~~L~L~~n-~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~- 138 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEI---DTYAFAYAHTIQKLYMGFN-AIRYLPPHV-FQNVPLLTVLVLERN-DLSSLPRGIFH- 138 (390)
T ss_dssp HCCCCSEEECTTS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred ccccCcEEECCCC-ccccc---ChhhccCCCCcCEEECCCC-CCCcCCHHH-hcCCCCCCEEECCCC-ccCcCCHHHhc-
Confidence 5789999999999 57665 1346788999999999998 677775543 578999999999999 88887765432
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccc--c
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS--E 157 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~--~ 157 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++. ++..+ +++|+++.++++....++. .
T Consensus 139 --------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 206 (390)
T 3o6n_A 139 --------NTPKLTTLSMSNNN-LERIED--DTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206 (390)
T ss_dssp --------TCTTCCEEECCSSC-CCBCCT--TTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSS
T ss_pred --------CCCCCcEEECCCCc-cCccCh--hhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCc
Confidence 68899999999886 555543 245678999999998864 44333 5678888887766544321 1
Q ss_pred ccccc--cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEE
Q 016694 158 ENFFL--TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE 235 (384)
Q Consensus 158 ~~~~~--~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 235 (384)
...+. ...+..+.. +..++|+.|+++++ .+... +....+++|++|+++++..-...|..+..+++|++|+
T Consensus 207 L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 207 VEELDASHNSINVVRG--PVNVELTILKLQHN-NLTDT-----AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CSEEECCSSCCCEEEC--CCCSSCCEEECCSS-CCCCC-----GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ceEEECCCCeeeeccc--cccccccEEECCCC-CCccc-----HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 11111 112222211 24678999999988 44443 2247789999999999854444466778899999999
Q ss_pred eecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCc
Q 016694 236 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 315 (384)
Q Consensus 236 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L 315 (384)
++++. ++.+ +.....+++|++|++++| .+..++.. ...+++|++|++++++ ++.++ ...+++|
T Consensus 279 L~~n~-l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~--------~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L 341 (390)
T 3o6n_A 279 ISNNR-LVAL--NLYGQPIPTLKVLDLSHN-HLLHVERN--------QPQFDRLENLYLDHNS-IVTLK----LSTHHTL 341 (390)
T ss_dssp CCSSC-CCEE--ECSSSCCTTCCEEECCSS-CCCCCGGG--------HHHHTTCSEEECCSSC-CCCCC----CCTTCCC
T ss_pred CCCCc-Cccc--CcccCCCCCCCEEECCCC-cceecCcc--------ccccCcCCEEECCCCc-cceeC----chhhccC
Confidence 99974 6666 344567899999999996 45544322 2238999999999864 66664 4568999
Q ss_pred cEEEeccCC
Q 016694 316 EHVVVRQCP 324 (384)
Q Consensus 316 ~~L~l~~c~ 324 (384)
++|++++++
T Consensus 342 ~~L~l~~N~ 350 (390)
T 3o6n_A 342 KNLTLSHND 350 (390)
T ss_dssp SEEECCSSC
T ss_pred CEEEcCCCC
Confidence 999999985
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.1e-19 Score=182.86 Aligned_cols=302 Identities=10% Similarity=0.061 Sum_probs=201.4
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcC------CCCCEEEEecccCccee
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVRNCDSLEEV 75 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~~~~~l~~~ 75 (384)
.+++|++|++++|.....+ |+.++.+++|++|++++|..+++ ..|.. ++.+ ++|++|++++| .+..+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~i 320 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKL----PTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTF 320 (636)
T ss_dssp GCTTCCEEEEECCTTCSSC----CTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSC
T ss_pred ccCCCCEEEecCCcCCccC----hHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCcc
Confidence 6899999999999655566 88899999999999999954775 33443 3454 89999999999 77766
Q ss_pred cc--cccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCC-eeEEEec
Q 016694 76 LH--LEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTD 147 (384)
Q Consensus 76 ~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~i~ 147 (384)
+. ... .+++|++|+++++..-..+| ....+++|++|+++++. ++.+| .+. |++|+++
T Consensus 321 p~~~~l~----------~l~~L~~L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 321 PVETSLQ----------KMKKLGMLECLYNQLEGKLP----AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp CCHHHHT----------TCTTCCEEECCSCCCEEECC----CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred Cchhhhc----------cCCCCCEEeCcCCcCccchh----hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence 54 222 56777777777765222444 23445666666666642 33333 234 6666666
Q ss_pred CCCCccccccccccccC----------Cccc-ccCCcc-------ccCCccEEecccccccccccccccccccccccccE
Q 016694 148 NKEPEKLTSEENFFLTD----------QIQP-LFDEKV-------AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 209 (384)
Q Consensus 148 ~~~~~~~~~~~~~~~~~----------~l~~-l~~~~~-------~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~ 209 (384)
++....++..+....+. .+.. ++..++ .+++|+.|+++++ .+..++... ...+++|++
T Consensus 386 ~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~---~~~l~~L~~ 461 (636)
T 4eco_A 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL---FSTGSPLSS 461 (636)
T ss_dssp SSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH---HHTTCCCSE
T ss_pred CCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH---HccCCCCCE
Confidence 66555444321111100 1111 111122 4679999999987 455543321 145789999
Q ss_pred EeeccCcccccccCCcccC--------CCcCEEEeecCCCCeeeccccccc--ccCcccEEeecccccccEecccccCcc
Q 016694 210 LKISECSKLQKLVTPSWHL--------ENLATLEVSKCHGLINVLTLSTSE--SLVNLGRMKIADCKMIEQIIQLQVGEE 279 (384)
Q Consensus 210 L~l~~~~~l~~l~~~~~~~--------~~L~~L~l~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~ 279 (384)
|+++++. ++.+|...... ++|+.|+++++. ++.+ +..+. .+++|++|+++++. +..++..
T Consensus 462 L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l--p~~~~~~~l~~L~~L~Ls~N~-l~~ip~~----- 531 (636)
T 4eco_A 462 INLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKL--SDDFRATTLPYLVGIDLSYNS-FSKFPTQ----- 531 (636)
T ss_dssp EECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBC--CGGGSTTTCTTCCEEECCSSC-CSSCCCG-----
T ss_pred EECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCcc--ChhhhhccCCCcCEEECCCCC-CCCcChh-----
Confidence 9999974 66777654432 289999999975 6665 34444 89999999999954 5544322
Q ss_pred ccceeeecccceeecccCC------CCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 280 AKGCVVFEELGYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 280 ~~~~~~~~~L~~L~l~~c~------~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
...+++|++|+++++. -...++. .+..+++|++|++++|.. +.+|..+. ++|+++++++|
T Consensus 532 ---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 532 ---PLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp ---GGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred ---hhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence 2238999999996543 2333332 367899999999999865 89998764 89999999999
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=3.9e-19 Score=172.37 Aligned_cols=285 Identities=15% Similarity=0.254 Sum_probs=171.0
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+++++.|++.++ .+..+ | .+..+++|++|++++| .+++.++ ++++++|++|++++| .+..+++..
T Consensus 45 l~~l~~L~l~~~-~i~~l----~-~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~---- 109 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSI----D-GVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITPLA---- 109 (466)
T ss_dssp HHTCCEEECCSS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGGGT----
T ss_pred hccccEEecCCC-CCccC----c-chhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChhhc----
Confidence 578999999998 56654 4 3678999999999998 7787755 579999999999999 787776522
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----CCCeeEEE--------------
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVT-------------- 145 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~-------------- 145 (384)
.+++|++|+++++. ++.++. ...+++|++|++++|. ++.++ .++|++|.
T Consensus 110 -------~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 176 (466)
T 1o6v_A 110 -------NLTNLTGLTLFNNQ-ITDIDP----LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANL 176 (466)
T ss_dssp -------TCTTCCEEECCSSC-CCCCGG----GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred -------CCCCCCEEECCCCC-CCCChH----HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccC
Confidence 78999999999886 665543 5678889999888763 22221 23444444
Q ss_pred -------ecCCCCccccccccccccCC----------cccccCCccccCCccEEeccccccccccccccccccccccccc
Q 016694 146 -------TDNKEPEKLTSEENFFLTDQ----------IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI 208 (384)
Q Consensus 146 -------i~~~~~~~~~~~~~~~~~~~----------l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~ 208 (384)
++++....++. +..+.. +..+.+ .+.+++|+.|+++++ .+..+ +....+++|+
T Consensus 177 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~-----~~l~~l~~L~ 246 (466)
T 1o6v_A 177 TTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDI-----GTLASLTNLT 246 (466)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCC-----GGGGGCTTCS
T ss_pred CCCCEEECcCCcCCCChh---hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccc-----hhhhcCCCCC
Confidence 44433221110 000000 001100 123344444444443 22221 1124455566
Q ss_pred EEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecc
Q 016694 209 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEE 288 (384)
Q Consensus 209 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 288 (384)
+|++++|. +..+++ +..+++|+.|+++++. +..+. . +..+++|++|++++|. +..+.. ...+++
T Consensus 247 ~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~---------~~~l~~ 310 (466)
T 1o6v_A 247 DLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNENQ-LEDISP---------ISNLKN 310 (466)
T ss_dssp EEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CSCCGG---------GGGCTT
T ss_pred EEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCCc-ccCchh---------hcCCCC
Confidence 66666543 333322 4556666666666653 33331 1 4456666777776643 332221 223677
Q ss_pred cceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 289 LGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 289 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
|+.|+++++ .++.... ...+++|++|++++| .++.++ .+..+++|+.+++++|.
T Consensus 311 L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 311 LTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp CSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 888888776 3444432 456788888888887 455554 45567888888888873
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=5e-19 Score=172.02 Aligned_cols=288 Identities=14% Similarity=0.082 Sum_probs=208.5
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++..+. .+..+ |..+ .+++++|++++| +++.+++.. +.++++|++|++++| .+..+.+....
T Consensus 14 ~~v~c~~~-~l~~i----p~~~--~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~------ 77 (477)
T 2id5_A 14 RAVLCHRK-RFVAV----PEGI--PTETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFN------ 77 (477)
T ss_dssp TEEECCSC-CCSSC----CSCC--CTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTT------
T ss_pred CEEEeCCC-CcCcC----CCCC--CCCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhh------
Confidence 34555544 45555 6543 469999999998 778875544 578999999999999 88888655533
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCccccccccccc
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++......+ .++|++|+++++......
T Consensus 78 ---~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------- 144 (477)
T 2id5_A 78 ---NLFNLRTLGLRSNR-LKLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS------- 144 (477)
T ss_dssp ---TCTTCCEEECCSSC-CCSCCT--TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-------
T ss_pred ---CCccCCEEECCCCc-CCccCc--ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC-------
Confidence 78999999999886 677765 234678999999999975332222 467999999876532211
Q ss_pred cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCC
Q 016694 163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHG 241 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~ 241 (384)
...++.+++|++|+++++ .+..++... ...+++|+.|+++++. +..+ +..+..+++|+.|++++|+.
T Consensus 145 -------~~~~~~l~~L~~L~l~~n-~l~~~~~~~---l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 145 -------HRAFSGLNSLEQLTLEKC-NLTSIPTEA---LSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp -------TTSSTTCTTCCEEEEESC-CCSSCCHHH---HTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTT
T ss_pred -------hhhccCCCCCCEEECCCC-cCcccChhH---hcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcc
Confidence 112337899999999988 555543221 3578999999999975 4444 34677899999999999988
Q ss_pred CeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 016694 242 LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 321 (384)
Q Consensus 242 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~ 321 (384)
+..++. ......+|++|++++| .+..++.. ....+++|+.|+++++ .++.+... .+..+++|++|+++
T Consensus 213 ~~~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 213 LDTMTP--NCLYGLNLTSLSITHC-NLTAVPYL-------AVRHLVYLRFLNLSYN-PISTIEGS-MLHELLRLQEIQLV 280 (477)
T ss_dssp CCEECT--TTTTTCCCSEEEEESS-CCCSCCHH-------HHTTCTTCCEEECCSS-CCCEECTT-SCTTCTTCCEEECC
T ss_pred ccccCc--ccccCccccEEECcCC-cccccCHH-------HhcCccccCeeECCCC-cCCccChh-hccccccCCEEECC
Confidence 877733 3344569999999996 45544421 1223889999999986 46776543 36789999999999
Q ss_pred cCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 322 QCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 322 ~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
+|..-...|..+..+++|+++++++|.
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCccceECHHHhcCcccCCEEECCCCc
Confidence 986444456677789999999999985
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.5e-19 Score=167.09 Aligned_cols=228 Identities=16% Similarity=0.190 Sum_probs=180.3
Q ss_pred cCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694 57 CLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF 136 (384)
Q Consensus 57 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 136 (384)
..+++++|+++++ .+..+++... .+++|++|+++++. ++.+|. .+..+++|++|+++++. ++.+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~----------~l~~L~~L~L~~n~-l~~lp~---~~~~l~~L~~L~Ls~n~-l~~l 142 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAF----------RLSHLQHMTIDAAG-LMELPD---TMQQFAGLETLTLARNP-LRAL 142 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGG----------GGTTCSEEEEESSC-CCCCCS---CGGGGTTCSEEEEESCC-CCCC
T ss_pred cccceeEEEccCC-CchhcChhhh----------hCCCCCEEECCCCC-ccchhH---HHhccCCCCEEECCCCc-cccC
Confidence 4589999999999 8887766543 68899999999887 557776 67789999999999863 3222
Q ss_pred cCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccccccccc-----ccccccccccEEe
Q 016694 137 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND-----ESNKAFANLIRLK 211 (384)
Q Consensus 137 ~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-----~~~~~~~~L~~L~ 211 (384)
...++.+++|+.|++++|..+..++..-. .....+++|++|+
T Consensus 143 ---------------------------------p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 143 ---------------------------------PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp ---------------------------------CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEE
T ss_pred ---------------------------------cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEE
Confidence 22233788999999999876666543210 0023589999999
Q ss_pred eccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccce
Q 016694 212 ISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGY 291 (384)
Q Consensus 212 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 291 (384)
++++ .++.+|..+..+++|++|++++|. ++.+ +..+..+++|++|++++|.....++.. ...+++|++
T Consensus 190 L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l--~~~l~~l~~L~~L~Ls~n~~~~~~p~~--------~~~l~~L~~ 257 (328)
T 4fcg_A 190 LEWT-GIRSLPASIANLQNLKSLKIRNSP-LSAL--GPAIHHLPKLEELDLRGCTALRNYPPI--------FGGRAPLKR 257 (328)
T ss_dssp EEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCC--CGGGGGCTTCCEEECTTCTTCCBCCCC--------TTCCCCCCE
T ss_pred CcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcC--chhhccCCCCCEEECcCCcchhhhHHH--------hcCCCCCCE
Confidence 9996 577898889999999999999975 6655 445678999999999998766554432 223899999
Q ss_pred eecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 292 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 292 L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
|++++|..++.++. .+..+++|++|++++|+.++.+|..+..+++++.+.+..+
T Consensus 258 L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 258 LILKDCSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECCCCCchhhcch--hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99999988888765 3778999999999999999999999999999999999876
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.4e-19 Score=179.11 Aligned_cols=279 Identities=14% Similarity=0.137 Sum_probs=192.5
Q ss_pred CCCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
+.+++.|++.++ .+..+ |+. +..+++|++|++++| .++++++.. ++.+++|++|++++| .+..+++....
T Consensus 50 l~~l~~l~l~~~-~l~~l----p~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~- 120 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKL----PAALLDSFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQ- 120 (597)
T ss_dssp GCCCSEEEESSC-EESEE----CTHHHHHCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-
T ss_pred CCCceEEEeeCC-CCCCc----CHHHHccCCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCCCHHHHc-
Confidence 466777777777 45555 443 356778888888877 566665433 457788888888887 67766654432
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 156 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~ 156 (384)
.+++|++|+++++. ++.++. .....+++|++|++++|. ++.++ .++|++|.++++....+
T Consensus 121 --------~l~~L~~L~L~~n~-l~~l~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 186 (597)
T 3oja_B 121 --------NVPLLTVLVLERND-LSSLPR--GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV-- 186 (597)
T ss_dssp --------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC--
T ss_pred --------CCCCCCEEEeeCCC-CCCCCH--HHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc--
Confidence 67788888888775 556654 123567788888887763 33322 34577777776553211
Q ss_pred cccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEe
Q 016694 157 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 236 (384)
Q Consensus 157 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 236 (384)
..+.+++|+.|+++++ .+..+ ...++|+.|+++++ .+..++.. ..++|+.|++
T Consensus 187 ---------------~~~~l~~L~~L~l~~n-~l~~l--------~~~~~L~~L~ls~n-~l~~~~~~--~~~~L~~L~L 239 (597)
T 3oja_B 187 ---------------DLSLIPSLFHANVSYN-LLSTL--------AIPIAVEELDASHN-SINVVRGP--VNVELTILKL 239 (597)
T ss_dssp ---------------CGGGCTTCSEEECCSS-CCSEE--------ECCTTCSEEECCSS-CCCEEECS--CCSCCCEEEC
T ss_pred ---------------ChhhhhhhhhhhcccC-ccccc--------cCCchhheeeccCC-cccccccc--cCCCCCEEEC
Confidence 1225777888888776 33332 34567899999886 46656443 3468999999
Q ss_pred ecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCcc
Q 016694 237 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 316 (384)
Q Consensus 237 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~ 316 (384)
+++. ++. +..+..+++|+.|+++++. +..++.. ....+++|+.|+++++ .++.++. ....+++|+
T Consensus 240 ~~n~-l~~---~~~l~~l~~L~~L~Ls~N~-l~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~ 304 (597)
T 3oja_B 240 QHNN-LTD---TAWLLNYPGLVEVDLSYNE-LEKIMYH-------PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLK 304 (597)
T ss_dssp CSSC-CCC---CGGGGGCTTCSEEECCSSC-CCEEESG-------GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCC
T ss_pred CCCC-CCC---ChhhccCCCCCEEECCCCc-cCCCCHH-------HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCc
Confidence 9975 544 3556789999999999954 5555332 1223899999999985 6777755 255689999
Q ss_pred EEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 317 HVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 317 ~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
+|++++| .++.+|..+..+++|++|++++|.
T Consensus 305 ~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 305 VLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 9999998 566888887789999999999986
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.9e-19 Score=175.16 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=146.7
Q ss_pred cccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCcccccc-----c---c
Q 016694 91 LFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSE-----E---N 159 (384)
Q Consensus 91 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~-----~---~ 159 (384)
.+++|++|++.++. ++.++. ....+ +|++|++++|. ++.+| .++|++|.+.++........ . .
T Consensus 280 ~l~~L~~L~l~~~~-l~~l~~---~~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 280 CLTNVSSFSLVSVT-IERVKD---FSYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GGTTCSEEEEESCE-ECSCCB---CCSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred CcCcccEEEecCcc-chhhhh---hhccC-CccEEeeccCc-ccccCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence 35889999998886 566665 44555 88888888764 33443 45677777776543221100 0 0
Q ss_pred ccccCCcccc---cCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCcccCCCcCEEE
Q 016694 160 FFLTDQIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLE 235 (384)
Q Consensus 160 ~~~~~~l~~l---~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~ 235 (384)
+..+ .+... ....+.+++|+.|+++++ .+..++.. ...+++|++|+++++......+ ..+..+++|++|+
T Consensus 354 l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 354 LSRN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCSS-CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CcCC-ccCccccccccccccCccCEEECCCC-cccccccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 0000 01110 111224667777777766 33332221 3567888888888865333333 2467888999999
Q ss_pred eecCCCCeeecccccccccCcccEEeecccccc-cEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCC
Q 016694 236 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMI-EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPS 314 (384)
Q Consensus 236 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~ 314 (384)
+++|. +.... +..+..+++|++|++++|... ..++. ....+++|++|++++| .++.+... .+..+++
T Consensus 428 l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~--------~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 428 ISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPD--------IFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSS 495 (570)
T ss_dssp CTTSC-CEECC-TTTTTTCTTCCEEECTTCEEGGGEECS--------CCTTCTTCCEEECTTS-CCCEECTT-TTTTCTT
T ss_pred CcCCc-ccccc-hhhhhcCCcCcEEECcCCcCccccchh--------hhhcccCCCEEECCCC-ccccCChh-hhhcccC
Confidence 99875 44432 445677899999999987532 12321 1223889999999987 56666332 3667999
Q ss_pred ccEEEeccCCCCCccCC-CCcCCCCCeeeccCCC
Q 016694 315 LEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEE 347 (384)
Q Consensus 315 L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~i~~~ 347 (384)
|++|++++|. ++.+|. .+..+++|+++++++|
T Consensus 496 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 496 LQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCC
Confidence 9999999984 555554 4567899999999998
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.6e-19 Score=178.48 Aligned_cols=129 Identities=17% Similarity=0.144 Sum_probs=72.1
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+ .|..+..+++|++|++++| ++++.++.. ++++++|++|++++| .+.++++....
T Consensus 26 ~~L~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~--- 95 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYI---GHGDLRACANLQVLILKSS-RINTIEGDA-FYSLGSLEHLDLSDN-HLSSLSSSWFG--- 95 (549)
T ss_dssp TTCCEEECCSS-CCCEE---CSSTTSSCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCSCCHHHHT---
T ss_pred CCccEEECcCC-ccCcc---ChhhhhcCCcccEEECCCC-CcCccChhh-ccccccCCEEECCCC-ccCccCHHHhc---
Confidence 46777777777 35443 1345666777777777776 556554433 356777777777777 56655544221
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCC
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEP 151 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~ 151 (384)
.+++|++|+++++. ++.++. ......+++|++|+++++..++.++ .++|++|+++++..
T Consensus 96 ------~l~~L~~L~Ls~n~-l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 96 ------PLSSLKYLNLMGNP-YQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp ------TCTTCCEEECTTCC-CSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ------cCCCCcEEECCCCc-ccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 55666666666664 332211 1134556666666666655443332 23455565555443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.1e-18 Score=173.25 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+ .|..+..+++|++|++++| +++++++.. ++++++|++|++++| .++.++..
T Consensus 52 ~~L~~L~Ls~N-~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------ 118 (562)
T 3a79_B 52 PRTKALSLSQN-SISEL---RMPDISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHN-RLQNISCC------ 118 (562)
T ss_dssp TTCCEEECCSS-CCCCC---CGGGTTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECSC------
T ss_pred CCcCEEECCCC-Ccccc---ChhhhccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCC-cCCccCcc------
Confidence 67888888888 45554 1346778888888888887 677765543 467888888888888 67766542
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. ......+++|++|+++++
T Consensus 119 ------~l~~L~~L~Ls~N~-l~~l~~-p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 119 ------PMASLRHLDLSFND-FDVLPV-CKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp ------CCTTCSEEECCSSC-CSBCCC-CGGGGGCTTCCEEEEECS
T ss_pred ------ccccCCEEECCCCC-ccccCc-hHhhcccCcccEEecCCC
Confidence 35677777777766 444432 124556677777777664
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=4.4e-19 Score=182.61 Aligned_cols=323 Identities=13% Similarity=0.126 Sum_probs=194.3
Q ss_pred CCCCCCceEecCCCcCcce-----eccc---------CCCCCC--CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEE
Q 016694 2 IGFRDIKYLQLGHFPRLQE-----IWHG---------QALPVS--FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 65 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~-----i~~~---------~p~~i~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 65 (384)
..+++|++|+++++. +.. .|.. .|+.++ .+++|++|++++|.....+ |.. ++++++|++|+
T Consensus 445 ~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 445 QRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDF-LYDLPELQSLN 521 (876)
T ss_dssp GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGG-GGGCSSCCEEE
T ss_pred hcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHH-HhCCCCCCEEE
Confidence 467899999999995 443 0110 288888 9999999999999544444 433 67999999999
Q ss_pred EecccCcce--ecccccccc-cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc----C
Q 016694 66 VRNCDSLEE--VLHLEELNA-DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----S 138 (384)
Q Consensus 66 l~~~~~l~~--~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~ 138 (384)
+++|..+.. +|....... ... .+++|++|+++++. ++.+|. ...+..+++|+.|+++++. ++.+| .
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~----~l~~L~~L~Ls~N~-L~~ip~-~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L 594 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDED----TGPKIQIFYMGYNN-LEEFPA-SASLQKMVKLGLLDCVHNK-VRHLEAFGTN 594 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTT----TTTTCCEEECCSSC-CCBCCC-HHHHTTCTTCCEEECTTSC-CCBCCCCCTT
T ss_pred CcCCCCcccccchHHHHhhhhccc----ccCCccEEEeeCCc-CCccCC-hhhhhcCCCCCEEECCCCC-cccchhhcCC
Confidence 999942664 443221100 112 56799999999987 555553 1246789999999999975 44554 3
Q ss_pred CCeeEEEecCCCCcccccccc-------cc--ccCCcccccCCcccc--CCccEEecccccccccccccccc-cc--ccc
Q 016694 139 NSVVHVTTDNKEPEKLTSEEN-------FF--LTDQIQPLFDEKVAF--PQLRYLELSRLHKVQHLWKENDE-SN--KAF 204 (384)
Q Consensus 139 ~~L~~L~i~~~~~~~~~~~~~-------~~--~~~~l~~l~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~-~~--~~~ 204 (384)
++|++|+++++....++..+. .+ +...+..+....+.. ++|+.|+++++.--..++. ++ .. ..+
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~--l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN--ISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS--CSSCTTTCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc--chhhhccccC
Confidence 568999999877554332110 00 000122222222222 2255555555421111100 00 00 123
Q ss_pred ccccEEeeccCcccccccCCcc-cCCCcCEEEeecCCCCeeeccccc------ccccCcccEEeecccccccEecccccC
Q 016694 205 ANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNLGRMKIADCKMIEQIIQLQVG 277 (384)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L~~L~l~~c~~l~~~~~~~~~ 277 (384)
++|+.|++++| .+..+|..+. .+++|+.|+++++ .+..++.... ...+++|+.|++++| .+..++.. ..
T Consensus 673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~-l~ 748 (876)
T 4ecn_A 673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FR 748 (876)
T ss_dssp CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG-GS
T ss_pred CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH-hh
Confidence 46777777765 3455655443 5677788887776 3554422111 112337888888775 34444322 11
Q ss_pred ccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc------CCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~------c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
...+++|+.|+++++ .++.++. ....+++|+.|++++ |.....+|..+..+++|+.|++++|.
T Consensus 749 -----~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 749 -----ATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp -----TTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred -----hccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 013778888888775 4555533 366788888888866 44455778777778888888888884
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.4e-18 Score=170.73 Aligned_cols=153 Identities=13% Similarity=0.127 Sum_probs=98.0
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccc--cccCCcccCCCcCEEEeecCCCCee-ecccccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLIN-VLTLSTS 251 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~ 251 (384)
.+++|++|+++++ .+...... ....+++|++|+++++..-. .+|..+..+++|++|+++++. +.. ++ ...+
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~-~~~~ 395 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFE---NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEK-KGDC 395 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTT---TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGG-GCSC
T ss_pred hCCcccEEEeECC-ccChhhhh---hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccc-cchh
Confidence 5666777777666 23321111 12456777777777754221 344445667777777777764 443 32 2234
Q ss_pred cccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC
Q 016694 252 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 331 (384)
Q Consensus 252 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 331 (384)
..+++|++|++++|.-...++.. ..++|++|+++++ +++.++. ....+++|++|++++| .++.+|.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~----------l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRC----------LPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGS----------CCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred ccCccCCEEECcCCCCCcchhhh----------hcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cCCccCH
Confidence 56677777777775422222211 1268999999886 6666654 3558999999999998 5778988
Q ss_pred C-CcCCCCCeeeccCCC
Q 016694 332 G-VVDAPKLNKVKPTEE 347 (384)
Q Consensus 332 ~-~~~~~~L~~l~i~~~ 347 (384)
. +..+++|+++++++|
T Consensus 462 ~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp TTTTTCTTCCEEECCSS
T ss_pred HHhccCCcccEEECcCC
Confidence 7 667899999999998
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=9.4e-19 Score=168.98 Aligned_cols=275 Identities=16% Similarity=0.120 Sum_probs=175.1
Q ss_pred CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694 28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK 107 (384)
Q Consensus 28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 107 (384)
+++.+++|++|++++| .+++.+ . ++.+++|++|++++| .+.+++ . . .+++|++|+++++. ++
T Consensus 37 ~~~~l~~L~~L~Ls~n-~l~~~~-~--l~~l~~L~~L~Ls~n-~l~~~~--~------~----~l~~L~~L~Ls~N~-l~ 98 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS-SITDMT-G--IEKLTGLTKLICTSN-NITTLD--L------S----QNTNLTYLACDSNK-LT 98 (457)
T ss_dssp EHHHHTTCCEEECCSS-CCCCCT-T--GGGCTTCSEEECCSS-CCSCCC--C------T----TCTTCSEEECCSSC-CS
T ss_pred ChhHcCCCCEEEccCC-CcccCh-h--hcccCCCCEEEccCC-cCCeEc--c------c----cCCCCCEEECcCCC-Cc
Confidence 4567899999999998 778774 2 579999999999999 787763 1 1 78899999999987 66
Q ss_pred ccccCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCcccc--c-----cccccccCCcccccCCccccC
Q 016694 108 RFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLT--S-----EENFFLTDQIQPLFDEKVAFP 177 (384)
Q Consensus 108 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~--~-----~~~~~~~~~l~~l~~~~~~~~ 177 (384)
.++ ...+++|++|+++++ .++.++ .++|++|.++++....++ . ...+..+..+..+ ..+.++
T Consensus 99 ~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 99 NLD-----VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp CCC-----CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred eee-----cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCC
Confidence 553 467999999999997 455555 457899999887754332 0 0001111111111 133566
Q ss_pred CccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcc
Q 016694 178 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 257 (384)
Q Consensus 178 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 257 (384)
+|+.|+++++ .++.++ ...+++|+.|+++++ .++.+ .+..+++|+.|+++++. ++.+ + +..+++|
T Consensus 171 ~L~~L~ls~n-~l~~l~------l~~l~~L~~L~l~~N-~l~~~--~l~~l~~L~~L~Ls~N~-l~~i--p--~~~l~~L 235 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD------VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFLDCSSNK-LTEI--D--VTPLTQL 235 (457)
T ss_dssp TCCEEECCSS-CCCCCC------CTTCTTCCEEECCSS-CCSCC--CCTTCTTCSEEECCSSC-CSCC--C--CTTCTTC
T ss_pred cCCEEECCCC-ccceec------cccCCCCCEEECcCC-cCCee--ccccCCCCCEEECcCCc-cccc--C--ccccCCC
Confidence 6666666665 344432 245667777777775 35554 35677788888888764 5554 2 4567888
Q ss_pred cEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-----
Q 016694 258 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG----- 332 (384)
Q Consensus 258 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~----- 332 (384)
++|+++++ .+..++...-..-........+|+.|++++|..+..++ ...+++|++|++++|+.++.+|..
T Consensus 236 ~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~ 310 (457)
T 3bz5_A 236 TYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGIT 310 (457)
T ss_dssp SEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred CEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcce
Confidence 88888875 34443321000000000011234555566665555554 245799999999999877666642
Q ss_pred ---CcCCCCCeeeccCCCC
Q 016694 333 ---VVDAPKLNKVKPTEEE 348 (384)
Q Consensus 333 ---~~~~~~L~~l~i~~~~ 348 (384)
+...++|++++++++.
T Consensus 311 ~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 311 ELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp CCCCTTCTTCCEEECTTCC
T ss_pred EechhhcccCCEEECCCCc
Confidence 2345677888887774
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.7e-18 Score=171.92 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=38.8
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC-CccCCCCcCCCCCeeeccCCCC
Q 016694 286 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM-KIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 286 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l-~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
+++|++|++++|. ++.... ..+..+++|++|++++|... ..+|..+..+++|+++++++|.
T Consensus 420 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 420 LRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp CTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 5566666666553 222211 12456788888888887543 2577777778888888888874
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=4.7e-18 Score=164.07 Aligned_cols=298 Identities=16% Similarity=0.130 Sum_probs=181.8
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|++|+++++.....+ .+..+..+++|++|++++| +++...+.. ++++++|++|++++| .+.+.....
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-- 122 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYN-QFLQLETGA-FNGLANLEVLTLTQC-NLDGAVLSG-- 122 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTC-TTCEECTTT-TTTCTTCCEEECTTS-CCBTHHHHS--
T ss_pred ccCccccEEECcCCcccceE---CcccccccccCCEEeCCCC-ccCccChhh-ccCcccCCEEeCCCC-CCCccccCc--
Confidence 46788888888888433233 1345677888888888887 566664443 467888888888888 665421111
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------------------------
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------------------------ 137 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------------------------ 137 (384)
.... .+++|++|+++++. ++.+.. ......+++|++|+++++..-...+
T Consensus 123 -~~~~----~l~~L~~L~L~~n~-l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 123 -NFFK----PLTSLEMLVLRDNN-IKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp -STTT----TCTTCCEEECCSSB-CCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred -cccc----CcccCCEEECCCCc-cCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 0011 56677777777766 444422 1124566777777776653211111
Q ss_pred ---------------CCCeeEEEecCCCCccc-cc---------cc---cccccC---------Ccccc---cCCccccC
Q 016694 138 ---------------SNSVVHVTTDNKEPEKL-TS---------EE---NFFLTD---------QIQPL---FDEKVAFP 177 (384)
Q Consensus 138 ---------------~~~L~~L~i~~~~~~~~-~~---------~~---~~~~~~---------~l~~l---~~~~~~~~ 177 (384)
.++|++|+++++..... +. .+ .+..+. .+... ....-..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 12456666655543210 00 00 000000 00000 00000246
Q ss_pred CccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcc
Q 016694 178 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 257 (384)
Q Consensus 178 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 257 (384)
+|+.|+++++ .+..+... ....+++|++|+++++..-...+..+..+++|++|+++++. ++.+. +..+..+++|
T Consensus 276 ~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L 349 (455)
T 3v47_A 276 GVKTCDLSKS-KIFALLKS---VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSID-SRMFENLDKL 349 (455)
T ss_dssp CCCEEECCSS-CCCEECTT---TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGGTTCTTC
T ss_pred CceEEEecCc-cccccchh---hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcC-hhHhcCcccC
Confidence 8999999887 34332221 13678999999999975444445578899999999999984 65553 3456789999
Q ss_pred cEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccC
Q 016694 258 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 330 (384)
Q Consensus 258 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp 330 (384)
++|++++| .+..+... ....+++|++|+++++ +++.++.. .+..+++|++|++++++.-...|
T Consensus 350 ~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYN-HIRALGDQ-------SFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSS-CCCEECTT-------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCC-cccccChh-------hccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence 99999996 46655432 1223899999999985 67776553 35679999999999986544444
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=4.4e-18 Score=172.61 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
+++++|+++++ .+..+ .+..++.+++|++|++++| .+++.++.. ++++++|++|++++| .+..+++....
T Consensus 25 ~~l~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~~~--- 94 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRL---PAANFTRYSQLTSLDVGFN-TISKLEPEL-CQKLPMLKVLNLQHN-ELSQLSDKTFA--- 94 (680)
T ss_dssp TTCSEEECCSS-CCCCC---CGGGGGGGTTCSEEECCSS-CCCCCCTTH-HHHCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCCcEEECCCC-CCCCc---CHHHHhCCCcCcEEECCCC-ccCccCHHH-HhcccCcCEEECCCC-ccCccChhhhc---
Confidence 57889999988 56554 1234778889999999887 667765543 568899999999988 77777654332
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE 152 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~ 152 (384)
.+++|++|+++++. ++.++. .....+++|++|++++|......+ .++|++|.++++...
T Consensus 95 ------~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 95 ------FCTNLTELHLMSNS-IQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp ------TCTTCSEEECCSSC-CCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred ------cCCCCCEEECCCCc-cCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 67788888888775 555543 245667888888888764322111 346778887776543
No 34
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=6.4e-18 Score=168.36 Aligned_cols=252 Identities=19% Similarity=0.148 Sum_probs=191.2
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
++++|+++++ .+..+ |..+. ++|++|++++| +++.++. .+++|++|++++| .++.++.
T Consensus 41 ~l~~L~ls~n-~L~~l----p~~l~--~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~-------- 98 (622)
T 3g06_A 41 GNAVLNVGES-GLTTL----PDCLP--AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV-------- 98 (622)
T ss_dssp CCCEEECCSS-CCSCC----CSCCC--TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC--------
T ss_pred CCcEEEecCC-CcCcc----ChhhC--CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC--------
Confidence 5889999998 67776 76544 89999999998 7777754 5699999999999 7877654
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
.+++|++|+++++. ++.++. .+++|+.|+++++ .++.+| +++|++|+++++.+..+
T Consensus 99 -----~l~~L~~L~Ls~N~-l~~l~~------~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l--------- 156 (622)
T 3g06_A 99 -----LPPGLLELSIFSNP-LTHLPA------LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASL--------- 156 (622)
T ss_dssp -----CCTTCCEEEECSCC-CCCCCC------CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCC---------
T ss_pred -----CCCCCCEEECcCCc-CCCCCC------CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCc---------
Confidence 46789999999886 666654 5788999999886 466565 46899999987663221
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 243 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 243 (384)
.. .+++|+.|+++++ .+..++ ..+++|+.|+++++ .++.+|. ..++|+.|+++++. ++
T Consensus 157 ------~~---~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~-l~ 214 (622)
T 3g06_A 157 ------PA---LPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNNR-LT 214 (622)
T ss_dssp ------CC---CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CS
T ss_pred ------CC---ccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCCc-cc
Confidence 11 3568899998887 555543 34688999999986 4666654 34789999999874 55
Q ss_pred eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 016694 244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 323 (384)
Q Consensus 244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c 323 (384)
.++ ..+++|++|++++| .+..++.. +++|++|+++++ +++.++. .+++|++|++++|
T Consensus 215 ~l~-----~~~~~L~~L~Ls~N-~L~~lp~~-----------l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 215 SLP-----ALPSGLKELIVSGN-RLTSLPVL-----------PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp SCC-----CCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred ccC-----CCCCCCCEEEccCC-ccCcCCCC-----------CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence 542 23588999999985 56655433 789999999886 6776643 5789999999998
Q ss_pred CCCCccCCCCcCCCCCeeeccCCC
Q 016694 324 PTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 324 ~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
.++.+|..+..+++|+.+++++|
T Consensus 272 -~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 272 -QLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp -CCCSCCGGGGGSCTTCEEECCSC
T ss_pred -CCCcCCHHHhhccccCEEEecCC
Confidence 57788988888999999999998
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=3.8e-18 Score=157.94 Aligned_cols=283 Identities=12% Similarity=0.093 Sum_probs=133.2
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
+++.++++++ .+..+ |..+ .++|++|++++| +++.+++.. ++++++|++|++++| .+..+.+....
T Consensus 34 ~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---- 99 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAV----PKEI--SPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNN-KISKIHEKAFS---- 99 (332)
T ss_dssp ETTEEECCSS-CCSSC----CSCC--CTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECGGGST----
T ss_pred cCCEEECCCC-Ccccc----CCCC--CCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCC-ccCccCHhHhh----
Confidence 4666776666 45554 5443 357777777776 556554433 456777777777777 66666443322
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN 159 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~ 159 (384)
.+++|++|+++++. ++.++. .. .++|++|+++++. ++.++ .++|++|+++++.....+
T Consensus 100 -----~l~~L~~L~L~~n~-l~~l~~---~~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 163 (332)
T 2ft3_A 100 -----PLRKLQKLYISKNH-LVEIPP---NL--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG---- 163 (332)
T ss_dssp -----TCTTCCEEECCSSC-CCSCCS---SC--CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG----
T ss_pred -----CcCCCCEEECCCCc-CCccCc---cc--cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC----
Confidence 56677777777665 555554 21 2667777776643 22221 234555555544321100
Q ss_pred ccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccccccc-CCcccCCCcCEEEeec
Q 016694 160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSK 238 (384)
Q Consensus 160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~ 238 (384)
......+.+ +|+.|+++++ .+..++.. ..++|++|+++++. ++.++ ..+..+++|++|++++
T Consensus 164 --------~~~~~~~~l-~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 164 --------FEPGAFDGL-KLNYLRISEA-KLTGIPKD------LPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp --------SCTTSSCSC-CCSCCBCCSS-BCSSCCSS------SCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCS
T ss_pred --------CCcccccCC-ccCEEECcCC-CCCccCcc------ccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence 000011122 4555555554 23332221 12455555555542 33332 3444555555555555
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcc-----cCCC
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFP 313 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~-----~~~~ 313 (384)
+. ++.+. +..+..+++|++|+++++ .+..++.. ...+++|++|+++++ .++.++..... ...+
T Consensus 227 N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 227 NQ-IRMIE-NGSLSFLPTLRELHLDNN-KLSRVPAG--------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp SC-CCCCC-TTGGGGCTTCCEEECCSS-CCCBCCTT--------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSC
T ss_pred Cc-CCcCC-hhHhhCCCCCCEEECCCC-cCeecChh--------hhcCccCCEEECCCC-CCCccChhHccccccccccc
Confidence 42 33331 122345555555555553 23333211 112455555555553 34444322100 0134
Q ss_pred CccEEEeccCCCC--CccCCCCcCCCCCeeeccCCC
Q 016694 314 SLEHVVVRQCPTM--KIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 314 ~L~~L~l~~c~~l--~~lp~~~~~~~~L~~l~i~~~ 347 (384)
+|++|.+.+++.. ...|..+..+++|+.++++++
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 5555555555432 122233334555555555544
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.6e-18 Score=167.03 Aligned_cols=307 Identities=13% Similarity=0.143 Sum_probs=180.7
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+ .|..+..+++|++|++++| ++++.++.. ++++++|++|++++| .+++++..
T Consensus 21 ~~L~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~------ 87 (520)
T 2z7x_B 21 QKTTILNISQN-YISEL---WTSDILSLSKLRILIISHN-RIQYLDISV-FKFNQELEYLDLSHN-KLVKISCH------ 87 (520)
T ss_dssp TTCSEEECCSS-CCCCC---CHHHHTTCTTCCEEECCSS-CCCEEEGGG-GTTCTTCCEEECCSS-CCCEEECC------
T ss_pred ccccEEECCCC-ccccc---ChhhccccccccEEecCCC-ccCCcChHH-hhcccCCCEEecCCC-ceeecCcc------
Confidence 67889999988 45544 1345678889999999988 677764543 568899999999998 77776542
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc---CCCe--eEEEecCCCC--c-cccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSV--VHVTTDNKEP--E-KLTS 156 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L--~~L~i~~~~~--~-~~~~ 156 (384)
.+++|++|+++++. ++.++. ......+++|++|+++++. ++... ..++ ++|.++++.. . ..+.
T Consensus 88 ------~l~~L~~L~L~~N~-l~~~~~-p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 88 ------PTVNLKHLDLSFNA-FDALPI-CKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp ------CCCCCSEEECCSSC-CSSCCC-CGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred ------ccCCccEEeccCCc-cccccc-hhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccccccccccc
Confidence 36789999998887 444321 1256778899999998864 33222 3455 8888877654 1 1111
Q ss_pred ccccc------------------------ccCCcccc-----------------cCCccccC------------------
Q 016694 157 EENFF------------------------LTDQIQPL-----------------FDEKVAFP------------------ 177 (384)
Q Consensus 157 ~~~~~------------------------~~~~l~~l-----------------~~~~~~~~------------------ 177 (384)
.+.-+ .+..+..+ .+..+.++
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence 10000 00000000 00011122
Q ss_pred ---------CccEEecccccccccccccc----------------------cc---------------------------
Q 016694 178 ---------QLRYLELSRLHKVQHLWKEN----------------------DE--------------------------- 199 (384)
Q Consensus 178 ---------~L~~L~l~~~~~l~~l~~~~----------------------~~--------------------------- 199 (384)
+|+.|+++++.--..++..- ++
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc
Confidence 33333333321000111100 00
Q ss_pred cccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeec-ccccccccCcccEEeecccccccE-ecccccC
Q 016694 200 SNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL-TLSTSESLVNLGRMKIADCKMIEQ-IIQLQVG 277 (384)
Q Consensus 200 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~ 277 (384)
....+++|++|+++++..-..+|..+..+++|++|+++++. ++.+. .+..+..+++|++|+++++. +.. ++..
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~--- 393 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG--- 393 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC---
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccc---
Confidence 00345666677776654333455666677777777777764 44321 12335667777777777743 333 3211
Q ss_pred ccccceeeecccceeecccCCCCceecCCCcccCC-CCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 278 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~-~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
....+++|++|+++++.--..++ ..+ ++|++|++++| .++.+|..+..+++|+++++++|.
T Consensus 394 ----~~~~l~~L~~L~Ls~N~l~~~~~-----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 ----DCSWTKSLLSLNMSSNILTDTIF-----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp ----SCCCCTTCCEEECCSSCCCGGGG-----GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ----hhccCccCCEEECcCCCCCcchh-----hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 12236788888887764222221 123 79999999998 577899888789999999999985
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=9e-18 Score=174.25 Aligned_cols=312 Identities=13% Similarity=0.063 Sum_probs=202.1
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
.++|++|+++++ .+..+ .|..+..+++|++|++++|.....+++.. ++++++|++|++++| .+..+.+....
T Consensus 23 p~~l~~LdLs~N-~i~~i---~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~~-- 94 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTV---TASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAFQ-- 94 (844)
T ss_dssp CTTCCEEEEESC-CCCEE---CSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSSC--
T ss_pred CCCcCEEECCCC-cCCcc---ChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHcc--
Confidence 378999999999 56654 25678899999999999986555554433 579999999999999 78887655543
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccc-----c-cCCCeeEEEecCCCCcccc-c
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET-----F-ISNSVVHVTTDNKEPEKLT-S 156 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----~-~~~~L~~L~i~~~~~~~~~-~ 156 (384)
.+++|++|+++++.....++. ......+++|++|+++++..... + ..++|++|+++++...... .
T Consensus 95 -------~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 95 -------GLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp -------SCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred -------CCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 788999999999873333443 23467899999999998754222 1 1467899999887654321 1
Q ss_pred cc-----------cccccCCcccccCCccccC------CccEEeccccccccccccc---c-------------------
Q 016694 157 EE-----------NFFLTDQIQPLFDEKVAFP------QLRYLELSRLHKVQHLWKE---N------------------- 197 (384)
Q Consensus 157 ~~-----------~~~~~~~l~~l~~~~~~~~------~L~~L~l~~~~~l~~l~~~---~------------------- 197 (384)
.+ .+..+.-........+.++ +|+.|+++++.--...... .
T Consensus 167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~ 246 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246 (844)
T ss_dssp GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence 10 1111111111111122333 3899999887211110000 0
Q ss_pred -----cc-----cc--cccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694 198 -----DE-----SN--KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 265 (384)
Q Consensus 198 -----~~-----~~--~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 265 (384)
+. .. ...++|+.|+++++......+..+..+++|+.|+++++. ++.+. +..+..+++|++|+++++
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIA-DEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEEC-TTTTTTCSSCCEEEEESC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCC-hHHhcCCCCCCEEECCCC
Confidence 00 00 113678899998875444445567788999999999874 55543 334577889999999985
Q ss_pred ccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccC
Q 016694 266 KMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT 345 (384)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~ 345 (384)
. +..+... ....+++|+.|+++++ .++.+... .+..+++|++|++++|. ++.++. +++|+.+.++
T Consensus 325 ~-l~~~~~~-------~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~ 389 (844)
T 3j0a_A 325 L-LGELYSS-------NFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLS 389 (844)
T ss_dssp C-CSCCCSC-------SCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEE
T ss_pred C-CCccCHH-------HhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCC-CCcccC----CCCcchhccC
Confidence 4 4444322 2223888999999886 56666543 35678999999999874 555543 6677777777
Q ss_pred CCC
Q 016694 346 EEE 348 (384)
Q Consensus 346 ~~~ 348 (384)
++.
T Consensus 390 ~N~ 392 (844)
T 3j0a_A 390 GNK 392 (844)
T ss_dssp SCC
T ss_pred CCC
Confidence 663
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.3e-17 Score=154.09 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=135.0
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
++++++++++ .+..+ |..+ .++|++|++++| +++++++.. ++++++|++|++++| .+..+.+....
T Consensus 32 ~l~~l~~~~~-~l~~l----p~~~--~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---- 97 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKV----PKDL--PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFA---- 97 (330)
T ss_dssp ETTEEECTTS-CCCSC----CCSC--CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTT----
T ss_pred CCeEEEecCC-Ccccc----CccC--CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHhc----
Confidence 4555555555 34433 4332 245666666665 455553322 345666666666666 55554332221
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 165 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 165 (384)
.+++|++|+++++. ++.++. . .+++|++|+++++. ++.++
T Consensus 98 -----~l~~L~~L~Ls~n~-l~~l~~---~--~~~~L~~L~l~~n~-l~~~~---------------------------- 137 (330)
T 1xku_A 98 -----PLVKLERLYLSKNQ-LKELPE---K--MPKTLQELRVHENE-ITKVR---------------------------- 137 (330)
T ss_dssp -----TCTTCCEEECCSSC-CSBCCS---S--CCTTCCEEECCSSC-CCBBC----------------------------
T ss_pred -----CCCCCCEEECCCCc-CCccCh---h--hcccccEEECCCCc-ccccC----------------------------
Confidence 45566666666554 444443 1 12455666555542 22111
Q ss_pred cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeee
Q 016694 166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV 245 (384)
Q Consensus 166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 245 (384)
.. .++.+++|+.|+++++. +...... ......+++|++|+++++ .++.+|..+ .++|++|+++++. ++.+
T Consensus 138 -~~---~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~-l~~~ 207 (330)
T 1xku_A 138 -KS---VFNGLNQMIVVELGTNP-LKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNK-ITKV 207 (330)
T ss_dssp -HH---HHTTCTTCCEEECCSSC-CCGGGBC-TTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSC-CCEE
T ss_pred -Hh---HhcCCccccEEECCCCc-CCccCcC-hhhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCCc-CCcc
Confidence 00 01256667777776652 2211000 011245667777777765 355554433 2667777777654 4443
Q ss_pred cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694 246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 325 (384)
Q Consensus 246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 325 (384)
. +..+..+++|++|+++++ .+..+... ....+++|++|+++++ .++.++. ....+++|++|++++| .
T Consensus 208 ~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~-------~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~ 274 (330)
T 1xku_A 208 D-AASLKGLNNLAKLGLSFN-SISAVDNG-------SLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-N 274 (330)
T ss_dssp C-TGGGTTCTTCCEEECCSS-CCCEECTT-------TGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-C
T ss_pred C-HHHhcCCCCCCEEECCCC-cCceeChh-------hccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC-c
Confidence 2 234456677777777764 34444321 1122567777777665 4554433 2556677777777766 3
Q ss_pred CCccCCCCc-------CCCCCeeeccCCC
Q 016694 326 MKIFSQGVV-------DAPKLNKVKPTEE 347 (384)
Q Consensus 326 l~~lp~~~~-------~~~~L~~l~i~~~ 347 (384)
++.++.... ..+.++.+++.++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCccChhhcCCcccccccccccceEeecC
Confidence 455543321 1255667777766
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=6.4e-18 Score=167.65 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=84.2
Q ss_pred ccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecc-cccccccCcccEEeecccccccE-ecccccCc--
Q 016694 203 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQ-IIQLQVGE-- 278 (384)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~-- 278 (384)
.+++|++|+++++..-..+|..+..+++|++|+++++ .++.+.. +..+..+++|++|+++++. +.. ++...-.+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcc
Confidence 4566777777765433345556667777777777775 3444321 2234566777777776643 322 22110000
Q ss_pred -----------c-ccceeee-cccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeecc
Q 016694 279 -----------E-AKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP 344 (384)
Q Consensus 279 -----------~-~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i 344 (384)
. ......+ ++|++|+++++ +++.++.. ...+++|++|++++| .++.+|.. +..+++|+++++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEe
Confidence 0 0000112 57788888775 66666543 447899999999887 56788877 667889999999
Q ss_pred CCC
Q 016694 345 TEE 347 (384)
Q Consensus 345 ~~~ 347 (384)
++|
T Consensus 505 ~~N 507 (562)
T 3a79_B 505 HDN 507 (562)
T ss_dssp CSC
T ss_pred cCC
Confidence 998
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=3.1e-17 Score=166.37 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=91.6
Q ss_pred cccccccEEeeccCcc--cccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccc-cCc
Q 016694 202 KAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ-VGE 278 (384)
Q Consensus 202 ~~~~~L~~L~l~~~~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~ 278 (384)
..+++|+.|+++++.. +..+|..+..+++|+.|+++++. ++.++ +..+.++++|++|+++++. +..+.... .++
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 527 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGG 527 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTS
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCC
Confidence 3456677777766542 24556667778888888888864 55542 2345678888888888753 44332110 000
Q ss_pred cccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694 279 EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 347 (384)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~ 347 (384)
.......+++|+.|+++++ .++.++.. .+..+++|++|+++++ .++.+|.+. ..+++|+.+++++|
T Consensus 528 ~~~~~~~l~~L~~L~L~~N-~l~~i~~~-~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESN-GFDEIPVE-VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cchhhcCCCCCCEEECCCC-CCCCCCHH-HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 0011234788899999875 56666543 2567899999999876 677787764 46899999999988
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=6.3e-18 Score=156.46 Aligned_cols=271 Identities=14% Similarity=0.043 Sum_probs=185.2
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
.++|++|+++++ .+..+ .|..+..+++|++|++++| +++.+.+.. ++++++|++|++++| .+..++...
T Consensus 53 ~~~l~~L~l~~n-~i~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~---- 121 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISEL---RKDDFKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HLVEIPPNL---- 121 (332)
T ss_dssp CTTCCEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CCCSCCSSC----
T ss_pred CCCCeEEECCCC-cCCcc---CHhHhhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cCCccCccc----
Confidence 368999999999 56665 1446889999999999998 778775544 578999999999999 788775433
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc--ccc--C--CCeeEEEecCCCCcccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME--TFI--S--NSVVHVTTDNKEPEKLTSE 157 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~--~--~~L~~L~i~~~~~~~~~~~ 157 (384)
+++|++|+++++. ++.++. .....+++|++|+++++..-. ..+ + ..|++|+++++....
T Consensus 122 --------~~~L~~L~l~~n~-i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~---- 186 (332)
T 2ft3_A 122 --------PSSLVELRIHDNR-IRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---- 186 (332)
T ss_dssp --------CTTCCEEECCSSC-CCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS----
T ss_pred --------cccCCEEECCCCc-cCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc----
Confidence 3789999999887 666654 245779999999999865321 111 1 156677766554322
Q ss_pred ccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEe
Q 016694 158 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEV 236 (384)
Q Consensus 158 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l 236 (384)
+... ..++|++|+++++ .+..+.... ...+++|++|+++++ .++.++. .+..+++|++|++
T Consensus 187 -----------l~~~--~~~~L~~L~l~~n-~i~~~~~~~---l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 187 -----------IPKD--LPETLNELHLDHN-KIQAIELED---LLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp -----------CCSS--SCSSCSCCBCCSS-CCCCCCTTS---STTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred -----------cCcc--ccCCCCEEECCCC-cCCccCHHH---hcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEEC
Confidence 2221 2368999999887 454443221 367889999999987 4555544 5788999999999
Q ss_pred ecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecC-CCcccCCCCc
Q 016694 237 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL-GNYALEFPSL 315 (384)
Q Consensus 237 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~-~~~~~~~~~L 315 (384)
+++. ++.+ +..+..+++|++|+++++ .++.+... .-........++.|+.|++.+++- ..... +..+..+++|
T Consensus 249 ~~N~-l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~~-~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 249 DNNK-LSRV--PAGLPDLKLLQVVYLHTN-NITKVGVN-DFCPVGFGVKRAYYNGISLFNNPV-PYWEVQPATFRCVTDR 322 (332)
T ss_dssp CSSC-CCBC--CTTGGGCTTCCEEECCSS-CCCBCCTT-SSSCSSCCSSSCCBSEEECCSSSS-CGGGSCGGGGTTBCCS
T ss_pred CCCc-Ceec--ChhhhcCccCCEEECCCC-CCCccChh-HccccccccccccccceEeecCcc-cccccCcccccccchh
Confidence 9974 6665 445678999999999985 46655432 111011111267899999998764 32211 1235668999
Q ss_pred cEEEeccCC
Q 016694 316 EHVVVRQCP 324 (384)
Q Consensus 316 ~~L~l~~c~ 324 (384)
+.++++++.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 999998875
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=2e-17 Score=171.65 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcc-cCchhHHhcCCCCCEEEEecccCcceeccc-
Q 016694 1 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVLHL- 78 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~- 78 (384)
|..+++|++|+++++ .+..+ .|..++.+++|++|++++| ++++ .+....++++++|++|++++| .+...+..
T Consensus 69 f~~L~~L~~L~Ls~N-~l~~~---~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~ 142 (844)
T 3j0a_A 69 FRNLPNLRILDLGSS-KIYFL---HPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHP 142 (844)
T ss_dssp TSSCTTCCEEECTTC-CCCEE---CTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCG
T ss_pred hcCCCCCCEEECCCC-cCccc---CHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccch
Confidence 356788999999988 45543 2667888899999999988 5555 333334568889999999988 66655332
Q ss_pred ccccccccccCCcccccceeccCccc
Q 016694 79 EELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
... .+++|++|+++++.
T Consensus 143 ~~~---------~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 143 SFG---------KLNSLKSIDFSSNQ 159 (844)
T ss_dssp GGG---------TCSSCCEEEEESSC
T ss_pred hHh---------hCCCCCEEECCCCc
Confidence 211 67778888877765
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.8e-18 Score=158.75 Aligned_cols=247 Identities=14% Similarity=0.086 Sum_probs=149.6
Q ss_pred CCccEEEeecCCCCcc--cCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 33 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+++.|+++++ ++.+ ..|.. ++++++|++|+++++..+.+..+.... .+++|++|+++++..-..++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~---------~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA---------KLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG---------GCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHh---------cCCCCCEEECcCCeeCCcCC
Confidence 56777888777 5554 22332 567788888888752255533333322 66777888877776333444
Q ss_pred cCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccc
Q 016694 111 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 190 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l 190 (384)
. ....+++|++|+++++..-... +..++.+++|++|+++++ .+
T Consensus 119 ~---~~~~l~~L~~L~Ls~N~l~~~~---------------------------------p~~~~~l~~L~~L~L~~N-~l 161 (313)
T 1ogq_A 119 D---FLSQIKTLVTLDFSYNALSGTL---------------------------------PPSISSLPNLVGITFDGN-RI 161 (313)
T ss_dssp G---GGGGCTTCCEEECCSSEEESCC---------------------------------CGGGGGCTTCCEEECCSS-CC
T ss_pred H---HHhCCCCCCEEeCCCCccCCcC---------------------------------ChHHhcCCCCCeEECcCC-cc
Confidence 4 4566777777777775211111 111225677777777776 33
Q ss_pred c-cccccccccccccc-cccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694 191 Q-HLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 268 (384)
Q Consensus 191 ~-~l~~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 268 (384)
. .++.. ...++ +|++|+++++..-..+|..+..++ |+.|+++++. ++.. .+..+..+++|++|+++++. +
T Consensus 162 ~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l 233 (313)
T 1ogq_A 162 SGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-L 233 (313)
T ss_dssp EEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-E
T ss_pred cCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-e
Confidence 3 22221 24454 777888877654445666666665 8888888764 4433 24455677888888888754 3
Q ss_pred cEecccccCccccceeeecccceeecccCCCCc-eecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 269 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
...+.. ...+++|++|+++++. ++ .++. .+..+++|++|++++|+.-..+|.. ..+++|+.+++.+|
T Consensus 234 ~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 234 AFDLGK--------VGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CCBGGG--------CCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eeecCc--------ccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 322211 2236788888887753 43 3322 3667888899998888655567765 56788888888887
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.1e-17 Score=152.76 Aligned_cols=270 Identities=14% Similarity=0.105 Sum_probs=181.0
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+. +..+..+++|++|++++| +++.+.+.. ++++++|++|++++| .+..++..
T Consensus 52 ~~l~~L~L~~n-~i~~~~---~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~------ 118 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIK---DGDFKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLKELPEK------ 118 (330)
T ss_dssp TTCCEEECCSS-CCCCBC---TTTTTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCSS------
T ss_pred CCCeEEECCCC-cCCEeC---hhhhccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCCccChh------
Confidence 68999999999 566651 336789999999999998 777775544 579999999999999 78776543
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccC
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD 164 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 164 (384)
.+++|++|+++++. ++.++. .....+++|+.|+++++.. +...
T Consensus 119 ------~~~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~l-~~~~--------------------------- 161 (330)
T 1xku_A 119 ------MPKTLQELRVHENE-ITKVRK--SVFNGLNQMIVVELGTNPL-KSSG--------------------------- 161 (330)
T ss_dssp ------CCTTCCEEECCSSC-CCBBCH--HHHTTCTTCCEEECCSSCC-CGGG---------------------------
T ss_pred ------hcccccEEECCCCc-ccccCH--hHhcCCccccEEECCCCcC-CccC---------------------------
Confidence 34789999999886 555543 2356789999999988643 2110
Q ss_pred CcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCCCe
Q 016694 165 QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHGLI 243 (384)
Q Consensus 165 ~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~ 243 (384)
.....++.+++|+.|+++++ .+..++.. ..++|++|+++++. ++.+ +..+..+++|++|+++++. ++
T Consensus 162 ---~~~~~~~~l~~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 229 (330)
T 1xku_A 162 ---IENGAFQGMKKLSYIRIADT-NITTIPQG------LPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-IS 229 (330)
T ss_dssp ---BCTTGGGGCTTCCEEECCSS-CCCSCCSS------CCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CC
T ss_pred ---cChhhccCCCCcCEEECCCC-ccccCCcc------ccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-Cc
Confidence 00011226778888888876 45444322 23788888888864 4444 4566778888888888864 55
Q ss_pred eecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCc-----ccCCCCccEE
Q 016694 244 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY-----ALEFPSLEHV 318 (384)
Q Consensus 244 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~-----~~~~~~L~~L 318 (384)
.+. +..+..+++|++|++++| .+..++.. ...+++|++|+++++ .++.++.... ....++++.+
T Consensus 230 ~~~-~~~~~~l~~L~~L~L~~N-~l~~lp~~--------l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 230 AVD-NGSLANTPHLRELHLNNN-KLVKVPGG--------LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp EEC-TTTGGGSTTCCEEECCSS-CCSSCCTT--------TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred eeC-hhhccCCCCCCEEECCCC-cCccCChh--------hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence 542 234567788888888885 35544322 123788888888875 4665544221 1134788999
Q ss_pred EeccCCCCC--ccCCCCcCCCCCeeeccCCC
Q 016694 319 VVRQCPTMK--IFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 319 ~l~~c~~l~--~lp~~~~~~~~L~~l~i~~~ 347 (384)
++.+++... ..|..+..+++++.+++++|
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 999886432 23344555788999998876
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=6.9e-17 Score=155.76 Aligned_cols=201 Identities=17% Similarity=0.136 Sum_probs=89.2
Q ss_pred ccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccccCCcccccC
Q 016694 94 KLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFD 171 (384)
Q Consensus 94 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~ 171 (384)
+|++|+++++. ++.++. ...+++|++|++++|. ++.+| +.+|++|+++++... .+.
T Consensus 174 ~L~~L~L~~n~-l~~l~~----~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~---------------~lp- 231 (454)
T 1jl5_A 174 SLEFIAAGNNQ-LEELPE----LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILE---------------ELP- 231 (454)
T ss_dssp TCCEEECCSSC-CSSCCC----CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCS---------------SCC-
T ss_pred cccEEECcCCc-CCcCcc----ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCC---------------ccc-
Confidence 45555555443 333321 3445555555555542 32222 234555555544322 221
Q ss_pred CccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccc--
Q 016694 172 EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLS-- 249 (384)
Q Consensus 172 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~-- 249 (384)
..+.+++|+.|+++++ .+..++. .+++|+.|+++++. ++.+|.. +++|+.|+++++. ++.++...
T Consensus 232 ~~~~l~~L~~L~l~~N-~l~~l~~-------~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~~ 298 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNN-LLKTLPD-------LPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENI-FSGLSELPPN 298 (454)
T ss_dssp CCTTCTTCCEEECCSS-CCSSCCS-------CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSEESCCCTT
T ss_pred ccCCCCCCCEEECCCC-cCCcccc-------cccccCEEECCCCc-ccccCcc---cCcCCEEECcCCc-cCcccCcCCc
Confidence 2345677777777765 3333211 23566666666642 4444332 2456666665543 33321000
Q ss_pred ------------ccccc-CcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCcc
Q 016694 250 ------------TSESL-VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 316 (384)
Q Consensus 250 ------------~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~ 316 (384)
....+ ++|++|+++++ .+..++.. +++|++|+++++ .++.++. .+++|+
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~-----------~~~L~~L~L~~N-~l~~lp~-----~l~~L~ 360 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL-----------PPRLERLIASFN-HLAEVPE-----LPQNLK 360 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCSCCCC-----CCTTCC
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc-----------CCcCCEEECCCC-ccccccc-----hhhhcc
Confidence 00011 24455555542 23332221 566777777664 4444432 356777
Q ss_pred EEEeccCCCCC--ccCCCCcCC-------------CCCeeeccCCC
Q 016694 317 HVVVRQCPTMK--IFSQGVVDA-------------PKLNKVKPTEE 347 (384)
Q Consensus 317 ~L~l~~c~~l~--~lp~~~~~~-------------~~L~~l~i~~~ 347 (384)
+|++++|+... .+|.++..+ ++|+++++++|
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 77777765433 455555444 66777777766
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=1.7e-16 Score=159.17 Aligned_cols=132 Identities=19% Similarity=0.086 Sum_probs=87.5
Q ss_pred ccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccccee
Q 016694 205 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV 284 (384)
Q Consensus 205 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 284 (384)
.+++.++++++..-...+..+..++.|+.|+++++...... .+..+..+++|++|++++| .++.++.. ...
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-------~f~ 515 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC-QLEQLSPT-------AFN 515 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTS-CCCEECTT-------TTT
T ss_pred cccccccccccccccccccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCC-ccCCcChH-------HHc
Confidence 34444444443222222334556778888888887544433 2445678899999999985 56666533 122
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCC-CCCeeeccCCC
Q 016694 285 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEE 347 (384)
Q Consensus 285 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~-~~L~~l~i~~~ 347 (384)
.+++|++|+++++ +++.+... .+..+++|++|+++++......|..+.++ ++|+++++++|
T Consensus 516 ~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 516 SLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 3889999999885 67776543 35678999999999985444445555555 68999999998
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=158.42 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=158.5
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
++|++|++++| +++.+++.. ++++++|++|++++| .+.++++.... .+++|++|+++++. ++.++.
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~- 117 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTIEEDSFS---------SLGSLEHLDLSYNY-LSNLSS- 117 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSSCCH-
T ss_pred ccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCccCHhhcC---------CCCCCCEEECCCCc-CCcCCH-
Confidence 46777777766 555554422 356677777777776 66655443322 55667777776664 444443
Q ss_pred cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccc
Q 016694 113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 192 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 192 (384)
.....+++|++|+++++ .++.++. . ..++.+++|++|+++++..+..
T Consensus 118 -~~~~~l~~L~~L~L~~n-~l~~l~~----------------------------~---~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 118 -SWFKPLSSLTFLNLLGN-PYKTLGE----------------------------T---SLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp -HHHTTCTTCSEEECTTC-CCSSSCS----------------------------S---CSCTTCTTCCEEEEEESSSCCE
T ss_pred -hHhCCCccCCEEECCCC-CCcccCc----------------------------h---hhhccCCCCcEEECCCCccccc
Confidence 12345666666666664 2222110 0 0123688999999998865555
Q ss_pred ccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694 193 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 272 (384)
Q Consensus 193 l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 272 (384)
+.... ...+++|++|+++++..-...|..+..+++|++|+++++. ++.++ ......+++|++|+++++. +....
T Consensus 165 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~ 238 (353)
T 2z80_A 165 IQRKD---FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTD-LDTFH 238 (353)
T ss_dssp ECTTT---TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCB-CTTCC
T ss_pred cCHHH---ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCc-ccccc
Confidence 43322 3568899999999976444446778889999999999875 54442 2234458899999999854 44332
Q ss_pred ccccCccccceeeecccceeecccCCCCce-----ecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCC
Q 016694 273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTS-----FCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTE 346 (384)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~-----l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~ 346 (384)
.. . .......+.++.+++.++ .+.. ++. ....+++|++|++++| .++.+|.++ ..+++|+++++++
T Consensus 239 ~~-~---l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 239 FS-E---LSTGETNSLIKKFTFRNV-KITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CC----------CCCCCCEEEEESC-BCCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cc-c---cccccccchhhccccccc-cccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 11 0 001112455666666554 2222 211 2457899999999998 677899875 6799999999999
Q ss_pred C
Q 016694 347 E 347 (384)
Q Consensus 347 ~ 347 (384)
|
T Consensus 311 N 311 (353)
T 2z80_A 311 N 311 (353)
T ss_dssp S
T ss_pred C
Confidence 9
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.6e-16 Score=153.41 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred ccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccc
Q 016694 203 AFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 281 (384)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 281 (384)
.+++|++|++++|..++.++. .+..+++|+.|+++++. ++.++ .+..+++|++|+++++ .+..+...
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~------- 236 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP---NLTPLVGLEELEMSGN-HFPEIRPG------- 236 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC---CCTTCTTCCEEECTTS-CCSEECGG-------
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc---cccccccccEEECcCC-cCcccCcc-------
Confidence 344555555555444444433 23344555555555542 33321 1334455555555543 23333211
Q ss_pred ceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694 282 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 347 (384)
Q Consensus 282 ~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~ 347 (384)
....+++|++|+++++ .++.+... .+..+++|++|++++| .++.+|... ..+++|+.+++++|
T Consensus 237 ~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNS-QVSLIERN-AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp GGTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cccCccCCCEEEeCCC-cCceECHH-HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence 1112445555555543 33333322 2344555666666555 344444332 34555666666555
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.9e-17 Score=157.63 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=55.4
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
++++|+++++ .+..+ .|..+..+++|++|++++| ++..+++.. +.++++|++|++++| .+..+++....
T Consensus 76 ~l~~L~L~~n-~i~~~---~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---- 144 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMI---QADTFRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-WLTVIPSGAFE---- 144 (452)
T ss_dssp TCSEEECCSS-CCCEE---CTTTTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSBCCTTTSS----
T ss_pred CccEEECcCC-cCceE---CHHHcCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-cCCccChhhhc----
Confidence 4555555555 34432 1334455556666666555 444443322 345555666666555 45544443321
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF 136 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 136 (384)
.+++|++|+++++. ++.++. .....+++|++|++++|..++.+
T Consensus 145 -----~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 145 -----YLSKLRELWLRNNP-IESIPS--YAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp -----SCTTCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEE
T ss_pred -----ccCCCCEEECCCCC-cceeCH--hHHhcCCcccEEeCCCCCCcccc
Confidence 45555566555554 344432 12344555555555555554433
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.8e-16 Score=152.43 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=26.6
Q ss_pred CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
+++++|++++| .+..+++.... .+++|++|+++++. ++.++. .....+++|++|+++++
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~---------~l~~L~~L~Ls~n~-i~~i~~--~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFK---------HLRHLEILQLSRNH-IRTIEI--GAFNGLANLNTLELFDN 122 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTS---------SCSSCCEEECCSSC-CCEECG--GGGTTCSSCCEEECCSS
T ss_pred CCCcEEEccCC-cCCeeCHHHhh---------CCCCCCEEECCCCc-CCccCh--hhccCCccCCEEECCCC
Confidence 44555555555 44444433221 44555555555543 333332 12334455555555543
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=6.4e-17 Score=155.59 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
+++.|+++++ .+..+. +..+..+++|++|++++| +++.+++.. +.++++|++|++++| .+..+++....
T Consensus 65 ~l~~L~L~~n-~i~~~~---~~~~~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~---- 133 (440)
T 3zyj_A 65 NTRLLNLHEN-QIQIIK---VNSFKHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIPNGAFV---- 133 (440)
T ss_dssp TCSEEECCSC-CCCEEC---TTTTSSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCCTTTSC----
T ss_pred CCcEEEccCC-cCCeeC---HHHhhCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeCHhHhh----
Confidence 4555555555 344330 233455555555555555 444443322 345555555555555 45544433221
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 134 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 134 (384)
.+++|++|+++++. ++.++. .....+++|++|++++|..+.
T Consensus 134 -----~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 134 -----YLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp -----SCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCC
T ss_pred -----ccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcc
Confidence 44555555555544 333332 123345555555555554444
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.8e-16 Score=157.90 Aligned_cols=237 Identities=18% Similarity=0.107 Sum_probs=183.5
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|++++| .+..+ |. .+++|++|++++| +++.++. .+++|++|++++| .+..++.
T Consensus 61 ~~L~~L~L~~N-~l~~l----p~---~l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l~~------- 118 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSL----PA---LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PLTHLPA------- 118 (622)
T ss_dssp TTCSEEEECSC-CCSCC----CC---CCTTCCEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCCCCCC-------
T ss_pred CCCcEEEecCC-CCCCC----CC---cCCCCCEEEcCCC-cCCcCCC-----CCCCCCEEECcCC-cCCCCCC-------
Confidence 68999999999 67766 54 5789999999999 6777754 6799999999999 7877754
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCccccccccccc
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
.+++|++|+++++. ++.++. .+++|++|++++| .++.+| +.+|+.|.++++.+..
T Consensus 119 ------~l~~L~~L~L~~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~--------- 175 (622)
T 3g06_A 119 ------LPSGLCKLWIFGNQ-LTSLPV------LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS--------- 175 (622)
T ss_dssp ------CCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSC---------
T ss_pred ------CCCCcCEEECCCCC-CCcCCC------CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCC---------
Confidence 45789999999886 777765 2589999999997 555554 4679999998766322
Q ss_pred cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCC
Q 016694 163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 242 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 242 (384)
+. ..+++|+.|+++++ .+..++ ..+++|+.|+++++ .++.+|. .+++|+.|+++++ .+
T Consensus 176 ------l~---~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L 233 (622)
T 3g06_A 176 ------LP---MLPSGLQELSVSDN-QLASLP-------TLPSELYKLWAYNN-RLTSLPA---LPSGLKELIVSGN-RL 233 (622)
T ss_dssp ------CC---CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSSCCC---CCTTCCEEECCSS-CC
T ss_pred ------Cc---ccCCCCcEEECCCC-CCCCCC-------CccchhhEEECcCC-cccccCC---CCCCCCEEEccCC-cc
Confidence 11 15789999999987 455542 23578999999986 5777754 3588999999997 46
Q ss_pred eeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694 243 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322 (384)
Q Consensus 243 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~ 322 (384)
+.++ ..+++|++|+++++ .+..++.. +++|+.|+++++ +++.++. .+..+++|+.|++++
T Consensus 234 ~~lp-----~~l~~L~~L~Ls~N-~L~~lp~~-----------~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 234 TSLP-----VLPSELKELMVSGN-RLTSLPML-----------PSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEG 293 (622)
T ss_dssp SCCC-----CCCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCS
T ss_pred CcCC-----CCCCcCcEEECCCC-CCCcCCcc-----------cccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecC
Confidence 6653 45689999999995 56666543 899999999986 6776653 477899999999999
Q ss_pred CCCCCc
Q 016694 323 CPTMKI 328 (384)
Q Consensus 323 c~~l~~ 328 (384)
|+.-..
T Consensus 294 N~l~~~ 299 (622)
T 3g06_A 294 NPLSER 299 (622)
T ss_dssp CCCCHH
T ss_pred CCCCCc
Confidence 875443
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=2.5e-17 Score=151.24 Aligned_cols=256 Identities=13% Similarity=0.078 Sum_probs=179.3
Q ss_pred CCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 5 RDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.++++|+++++.-.+ .+ |+.++.+++|++|+++++.++.+..|.. ++++++|++|++++| .+....+....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~----~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~- 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLS- 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGG-
T ss_pred ceEEEEECCCCCccCCccc----ChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHh-
Confidence 579999999984333 45 7788999999999999633667655554 579999999999999 77754444332
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
.+++|++|+++++..-..++. .+..+++|++|+++++..-..+|
T Consensus 123 --------~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p------------------------- 166 (313)
T 1ogq_A 123 --------QIKTLVTLDFSYNALSGTLPP---SISSLPNLVGITFDGNRISGAIP------------------------- 166 (313)
T ss_dssp --------GCTTCCEEECCSSEEESCCCG---GGGGCTTCCEEECCSSCCEEECC-------------------------
T ss_pred --------CCCCCCEEeCCCCccCCcCCh---HHhcCCCCCeEECcCCcccCcCC-------------------------
Confidence 788999999999873335554 56778999999998863221111
Q ss_pred cCCcccccCCccccC-CccEEecccccccc-cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 163 TDQIQPLFDEKVAFP-QLRYLELSRLHKVQ-HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~-~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
..++.++ +|+.|+++++. +. .++.. ...++ |++|+++++..-...|..+..+++|+.|+++++.
T Consensus 167 --------~~l~~l~~~L~~L~L~~N~-l~~~~~~~----~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 167 --------DSYGSFSKLFTSMTISRNR-LTGKIPPT----FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp --------GGGGCCCTTCCEEECCSSE-EEEECCGG----GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred --------HHHhhhhhcCcEEECcCCe-eeccCChH----HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 1122565 89999999873 33 22211 23444 9999999976555666777889999999999975
Q ss_pred CCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEe
Q 016694 241 GLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 320 (384)
Q Consensus 241 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l 320 (384)
+... ...+..+++|++|+++++. +...+.. ....+++|++|+++++.--..++. ...+++|+++++
T Consensus 233 -l~~~--~~~~~~l~~L~~L~Ls~N~-l~~~~p~-------~l~~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l 298 (313)
T 1ogq_A 233 -LAFD--LGKVGLSKNLNGLDLRNNR-IYGTLPQ-------GLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAY 298 (313)
T ss_dssp -ECCB--GGGCCCCTTCCEEECCSSC-CEECCCG-------GGGGCTTCCEEECCSSEEEEECCC---STTGGGSCGGGT
T ss_pred -eeee--cCcccccCCCCEEECcCCc-ccCcCCh-------HHhcCcCCCEEECcCCcccccCCC---CccccccChHHh
Confidence 4332 2225678999999999864 4422221 223388999999998743234443 366889999999
Q ss_pred ccCCCCCccCC
Q 016694 321 RQCPTMKIFSQ 331 (384)
Q Consensus 321 ~~c~~l~~lp~ 331 (384)
.+++.+...|.
T Consensus 299 ~~N~~lc~~p~ 309 (313)
T 1ogq_A 299 ANNKCLCGSPL 309 (313)
T ss_dssp CSSSEEESTTS
T ss_pred cCCCCccCCCC
Confidence 99886655553
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.9e-17 Score=151.78 Aligned_cols=259 Identities=18% Similarity=0.118 Sum_probs=161.3
Q ss_pred CCCceEecCCCcCcceecccCCC-CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQAL-PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~-~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
++|++|+++++ .+..+ +. .+..+++|++|++++| ++++.++.. ++++++|++|++++| .+..+++....
T Consensus 52 ~~L~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~-- 121 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYI----SNSDLQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-YLSNLSSSWFK-- 121 (353)
T ss_dssp TTCCEEECTTS-CCCEE----CTTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCSSCCHHHHT--
T ss_pred ccCcEEECCCC-cCccc----CHHHhccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-cCCcCCHhHhC--
Confidence 58999999999 67776 44 6789999999999998 778775543 568999999999999 88877665322
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
.+++|++|+++++. ++.++. ......+++|++|+++++..++.++..
T Consensus 122 -------~l~~L~~L~L~~n~-l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------ 168 (353)
T 2z80_A 122 -------PLSSLTFLNLLGNP-YKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRK------------------------ 168 (353)
T ss_dssp -------TCTTCSEEECTTCC-CSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTT------------------------
T ss_pred -------CCccCCEEECCCCC-CcccCc-hhhhccCCCCcEEECCCCccccccCHH------------------------
Confidence 68899999999886 666653 235667999999999998656544211
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc-ccCCCcCEEEeecCCCC
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGL 242 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l 242 (384)
.++.+++|++|+++++ .+..+... ....+++|++|+++++. ++.++... ..+++|+.|+++++. +
T Consensus 169 --------~~~~l~~L~~L~l~~n-~l~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l 234 (353)
T 2z80_A 169 --------DFAGLTFLEELEIDAS-DLQSYEPK---SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-L 234 (353)
T ss_dssp --------TTTTCCEEEEEEEEET-TCCEECTT---TTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-C
T ss_pred --------HccCCCCCCEEECCCC-CcCccCHH---HHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-c
Confidence 1114566666666665 23322111 12455667777776653 44443322 235667777777653 3
Q ss_pred eeecccc--cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEe
Q 016694 243 INVLTLS--TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 320 (384)
Q Consensus 243 ~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l 320 (384)
+...... .....+.++.+++.++. +..... ...+.....+++|++|+++++ +++.++.. .+..+++|++|++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l---~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L 308 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVK-ITDESL---FQVMKLLNQISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWL 308 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCB-CCHHHH---HHHHHHHHTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEEC
T ss_pred ccccccccccccccchhhcccccccc-ccCcch---hhhHHHHhcccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEe
Confidence 3321111 11234456666666532 211000 000011223778888888775 56665542 2357888888888
Q ss_pred ccCCCC
Q 016694 321 RQCPTM 326 (384)
Q Consensus 321 ~~c~~l 326 (384)
++|+..
T Consensus 309 ~~N~~~ 314 (353)
T 2z80_A 309 HTNPWD 314 (353)
T ss_dssp CSSCBC
T ss_pred eCCCcc
Confidence 888543
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=5.8e-18 Score=155.73 Aligned_cols=241 Identities=14% Similarity=0.104 Sum_probs=124.9
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+++|++|++++| +++..++.. ++++++|++|++++| .+.+.++-. .+++|++|+++++. ++.++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-----------~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLDLE-----------SLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEEEET-----------TCTTCCEEECCSSE-EEEEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcchhhh-----------hcCCCCEEECcCCc-ccccc
Confidence 4568888888887 667665443 568888888888888 676655411 67788888888776 55554
Q ss_pred cCcccccCCCCceeEeeccCCCccccc---CCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccc
Q 016694 111 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 187 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 187 (384)
. .++|++|+++++. ++.++ +++|++|.++++....++ ....+.+++|+.|+++++
T Consensus 97 ~-------~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~--------------~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 97 V-------GPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLR--------------DLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp E-------CTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGG--------------GBCTGGGSSEEEEECTTS
T ss_pred C-------CCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCcc--------------chhhhccCCCCEEECCCC
Confidence 4 4778888887753 33332 334555555443321110 001124556666666655
Q ss_pred cccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccc
Q 016694 188 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 267 (384)
Q Consensus 188 ~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 267 (384)
.+..+....+ ...+++|++|+++++. ++.++. ...+++|++|+++++. ++.++ ..+..+++|++|+++++ .
T Consensus 155 -~l~~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~--~~~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 155 -EIDTVNFAEL--AASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMG--PEFQSAAGVTWISLRNN-K 225 (317)
T ss_dssp -CCCEEEGGGG--GGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEEC--GGGGGGTTCSEEECTTS-C
T ss_pred -CCCcccHHHH--hhccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCCc-CCcch--hhhcccCcccEEECcCC-c
Confidence 3332211110 1234566666666542 444422 2235566666666542 44442 22445556666666653 3
Q ss_pred ccEecccccCccccceeeecccceeecccCCCC-ceecCCCcccCCCCccEEEeccCCCCC
Q 016694 268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMK 327 (384)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~~~L~~L~l~~c~~l~ 327 (384)
+..++.. ...+++|+.|++++++-- ..++ .....+++|+++.+.++..++
T Consensus 226 l~~l~~~--------~~~l~~L~~L~l~~N~~~~~~~~--~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 226 LVLIEKA--------LRFSQNLEHFDLRGNGFHCGTLR--DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCEECTT--------CCCCTTCCEEECTTCCCBHHHHH--HHHHTCHHHHHHHHHHHHHHH
T ss_pred ccchhhH--------hhcCCCCCEEEccCCCccCcCHH--HHHhccccceEEECCCchhcc
Confidence 4433221 112455555555554322 1111 123345555555555444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=6.4e-16 Score=141.19 Aligned_cols=244 Identities=16% Similarity=0.128 Sum_probs=125.8
Q ss_pred eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceec--cccccccccc
Q 016694 9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL--HLEELNADKE 86 (384)
Q Consensus 9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~ 86 (384)
.++.++. .+..+ |.. ..++|++|++++| +++.+++ ..++++++|++|++++| .+.... +....
T Consensus 11 ~l~c~~~-~l~~i----p~~--~~~~l~~L~L~~n-~l~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~----- 75 (306)
T 2z66_A 11 EIRCNSK-GLTSV----PTG--IPSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF----- 75 (306)
T ss_dssp EEECCSS-CCSSC----CSC--CCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-----
T ss_pred EEEcCCC-CcccC----CCC--CCCCCCEEECCCC-ccCccCH-hHhhccccCCEEECCCC-ccCcccCcccccc-----
Confidence 4555554 45544 543 2367888888877 5666543 33467788888888877 565432 11111
Q ss_pred ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCc
Q 016694 87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQI 166 (384)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l 166 (384)
.+++|++|+++++. ++.++. ....+++|++|+++++. ++.++ .
T Consensus 76 ----~~~~L~~L~Ls~n~-i~~l~~---~~~~l~~L~~L~l~~n~-l~~~~---------------------------~- 118 (306)
T 2z66_A 76 ----GTTSLKYLDLSFNG-VITMSS---NFLGLEQLEHLDFQHSN-LKQMS---------------------------E- 118 (306)
T ss_dssp ----SCSCCCEEECCSCS-EEEEEE---EEETCTTCCEEECTTSE-EESST---------------------------T-
T ss_pred ----cccccCEEECCCCc-cccChh---hcCCCCCCCEEECCCCc-ccccc---------------------------c-
Confidence 45677777777765 444544 34556666666666641 22110 0
Q ss_pred ccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccc-cccCCcccCCCcCEEEeecCCCCeee
Q 016694 167 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINV 245 (384)
Q Consensus 167 ~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~l 245 (384)
+...+.+++|+.|+++++ .+...... ....+++|++|+++++.... .+|..+..+++|++|+++++. ++.+
T Consensus 119 ---~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 190 (306)
T 2z66_A 119 ---FSVFLSLRNLIYLDISHT-HTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQL 190 (306)
T ss_dssp ---TTTTTTCTTCCEEECTTS-CCEECSTT---TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEE
T ss_pred ---chhhhhccCCCEEECCCC-cCCccchh---hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCc
Confidence 001114556666666655 22221111 01344555555555543222 234444455555555555542 3332
Q ss_pred cccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 016694 246 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 325 (384)
Q Consensus 246 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~ 325 (384)
. +..+..+++|++|++++ + .++.+... .+..+++|++|++++|..
T Consensus 191 ~-~~~~~~l~~L~~L~L~~--------------------------------N-~l~~~~~~-~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 191 S-PTAFNSLSSLQVLNMSH--------------------------------N-NFFSLDTF-PYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp C-TTTTTTCTTCCEEECTT--------------------------------S-CCSBCCSG-GGTTCTTCCEEECTTSCC
T ss_pred C-HHHhcCCCCCCEEECCC--------------------------------C-ccCccChh-hccCcccCCEeECCCCCC
Confidence 1 12233444444444444 3 23332221 134567788888887754
Q ss_pred CCccCCCCcCC-CCCeeeccCCC
Q 016694 326 MKIFSQGVVDA-PKLNKVKPTEE 347 (384)
Q Consensus 326 l~~lp~~~~~~-~~L~~l~i~~~ 347 (384)
....|..+..+ ++|+++++++|
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTC
T ss_pred cccCHHHHHhhhccCCEEEccCC
Confidence 44455555555 47888888887
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=6.5e-17 Score=148.68 Aligned_cols=236 Identities=15% Similarity=0.118 Sum_probs=163.7
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 113 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 113 (384)
.++..+++.+ .+... +..+...+++|++|++++| .+..+++.... .+++|++|+++++. ++.++.
T Consensus 11 ~l~i~~ls~~-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~-- 75 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQA-LASLRQSAWNVKELDLSGN-PLSQISAADLA---------PFTKLELLNLSSNV-LYETLD-- 75 (317)
T ss_dssp EEEEESCCTT-THHHH-HHHHHTTGGGCSEEECTTS-CCCCCCHHHHT---------TCTTCCEEECTTSC-CEEEEE--
T ss_pred ceeEeecccc-chhhh-HHHHhccCCCCCEEECcCC-ccCcCCHHHhh---------CCCcCCEEECCCCc-CCcchh--
Confidence 3445555554 44443 3344567789999999999 88877654432 78899999999987 444332
Q ss_pred ccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccc
Q 016694 114 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL 193 (384)
Q Consensus 114 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l 193 (384)
...+++|++|+++++ .++.++ ..++|+.|+++++ .+..+
T Consensus 76 --~~~l~~L~~L~Ls~n-~l~~l~-------------------------------------~~~~L~~L~l~~n-~l~~~ 114 (317)
T 3o53_A 76 --LESLSTLRTLDLNNN-YVQELL-------------------------------------VGPSIETLHAANN-NISRV 114 (317)
T ss_dssp --ETTCTTCCEEECCSS-EEEEEE-------------------------------------ECTTCCEEECCSS-CCSEE
T ss_pred --hhhcCCCCEEECcCC-cccccc-------------------------------------CCCCcCEEECCCC-ccCCc
Confidence 567889999999986 343321 3467788887776 44443
Q ss_pred cccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEec
Q 016694 194 WKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 272 (384)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~ 272 (384)
.. ..+++|++|+++++. ++.+ +..+..+++|++|+++++. ++.+........+++|++|++++|. +..+.
T Consensus 115 ~~------~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 185 (317)
T 3o53_A 115 SC------SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK 185 (317)
T ss_dssp EE------CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred Cc------cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence 22 236778888888764 4444 3356677888888888864 6555444444567888999998854 55553
Q ss_pred ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
.. ..+++|++|+++++ .++.++. .+..+++|++|++++| .++.+|..+..+++|+.+++++|
T Consensus 186 ~~---------~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 186 GQ---------VVFAKLKTLDLSSN-KLAFMGP--EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CC---------CCCTTCCEEECCSS-CCCEECG--GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred cc---------cccccCCEEECCCC-cCCcchh--hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 21 13788999999885 5666654 2667899999999888 56788888778899999999988
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.4e-15 Score=143.88 Aligned_cols=276 Identities=16% Similarity=0.147 Sum_probs=154.4
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
++++|+++++ .+..+ |. ..++|++|++++| ++++++. ..++|++|++++| .+.+++.
T Consensus 72 ~l~~L~l~~~-~l~~l----p~---~~~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~-------- 128 (454)
T 1jl5_A 72 QAHELELNNL-GLSSL----PE---LPPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSD-------- 128 (454)
T ss_dssp TCSEEECTTS-CCSCC----CS---CCTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCS--------
T ss_pred CCCEEEecCC-ccccC----CC---CcCCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccC--------
Confidence 4678888888 45554 43 2367888888877 6666542 2377888888887 6665432
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc--CCCeeEEEecCCCCcccccccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
..++|++|+++++. ++.+|. ...+++|++|+++++ .++.+| +.+|++|+++++....++. +..+
T Consensus 129 -----~~~~L~~L~L~~n~-l~~lp~----~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~---~~~l 194 (454)
T 1jl5_A 129 -----LPPLLEYLGVSNNQ-LEKLPE----LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPE---LQNL 194 (454)
T ss_dssp -----CCTTCCEEECCSSC-CSSCCC----CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCC---CTTC
T ss_pred -----CCCCCCEEECcCCC-CCCCcc----cCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcCCcCcc---ccCC
Confidence 22577888887775 555542 566778888888775 344444 3467788777765433221 0000
Q ss_pred CC----------cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCE
Q 016694 164 DQ----------IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLAT 233 (384)
Q Consensus 164 ~~----------l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 233 (384)
.. +..+.. ..++|++|+++++ .+..++ ....+++|++|+++++ .++.+|. .+++|+.
T Consensus 195 ~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n-~l~~lp-----~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~ 261 (454)
T 1jl5_A 195 PFLTAIYADNNSLKKLPD---LPLSLESIVAGNN-ILEELP-----ELQNLPFLTTIYADNN-LLKTLPD---LPPSLEA 261 (454)
T ss_dssp TTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSSCC-----CCTTCTTCCEEECCSS-CCSSCCS---CCTTCCE
T ss_pred CCCCEEECCCCcCCcCCC---CcCcccEEECcCC-cCCccc-----ccCCCCCCCEEECCCC-cCCcccc---cccccCE
Confidence 00 111111 1235555555554 333322 1245666666666664 3444433 2356677
Q ss_pred EEeecCCCCeeecccccccccCcccEEeecccccccEecccc--------cCccccceeee-cccceeecccCCCCceec
Q 016694 234 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ--------VGEEAKGCVVF-EELGYLGLDCLPSLTSFC 304 (384)
Q Consensus 234 L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--------~~~~~~~~~~~-~~L~~L~l~~c~~L~~l~ 304 (384)
|+++++. ++.++ . .+++|++|++++|. +..+.... .+........+ ++|++|+++++ +++.++
T Consensus 262 L~l~~N~-l~~l~--~---~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp 333 (454)
T 1jl5_A 262 LNVRDNY-LTDLP--E---LPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP 333 (454)
T ss_dssp EECCSSC-CSCCC--C---CCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC
T ss_pred EECCCCc-ccccC--c---ccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc
Confidence 7776653 43331 1 23567777777642 43332110 00000001112 35666666553 344432
Q ss_pred CCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeeccCCCC
Q 016694 305 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~~ 348 (384)
..+++|++|++++| .++.+|. .+++|+++++++|.
T Consensus 334 -----~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 334 -----ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -----CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred -----ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCC
Confidence 23689999999888 5677887 37899999999885
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=2.7e-15 Score=150.42 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=73.1
Q ss_pred cCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCC
Q 016694 227 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 306 (384)
Q Consensus 227 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 306 (384)
.+.+++.++++.+. +... .+.....+++|+.|+++++.....+... ....+++|++|+++++ +++.+...
T Consensus 443 ~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-------~~~~l~~L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 443 SLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPD-------IFTELRNLTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp TCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTS-CCCEECTT
T ss_pred cccccccccccccc-cccc-cccccccchhhhhhhhhhcccccccCch-------hhhhccccCEEECCCC-ccCCcChH
Confidence 34445555555432 3322 2334456677888888776544433221 2223789999999987 67777543
Q ss_pred CcccCCCCccEEEeccCCCCCccCC-CCcCCCCCeeeccCCCC
Q 016694 307 NYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 307 ~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~~~~L~~l~i~~~~ 348 (384)
.+..+++|++|++++| +++.++. .+..+++|+++++++|.
T Consensus 513 -~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 513 -AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp -TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred -HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCc
Confidence 3678999999999998 5666654 45678999999999985
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.5e-17 Score=164.28 Aligned_cols=135 Identities=12% Similarity=0.143 Sum_probs=77.7
Q ss_pred CCCCCceEecCCCcCcceecccCCCC------------CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEeccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALP------------VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 70 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~------------i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 70 (384)
.+++|++|++.+++.+.++.. .|.. ...+++|++|++++| .+++..+..+...+++|++|++.+|.
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNL-VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hCCCceEEeccCCCchhhccc-ccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 467888898888765543210 0110 135778888888888 46655455555578888888888885
Q ss_pred Cccee-cccccccccccccCCcccccceeccCcccccccccc--CcccccCCCCceeEeeccCC-Cccc--cc-----CC
Q 016694 71 SLEEV-LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPELRYLAIENCP-DMET--FI-----SN 139 (384)
Q Consensus 71 ~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~L~~L~l~~c~-~l~~--~~-----~~ 139 (384)
.+... .... .. .+++|++|++++|. ++.... .......+++|++|++++|. .++. +. .+
T Consensus 142 ~~~~~~l~~~-----~~----~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 142 GFSTDGLAAI-----AA----TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211 (594)
T ss_dssp EEEHHHHHHH-----HH----HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred CCCHHHHHHH-----HH----hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence 44321 0111 11 56788888887776 332111 01123356677777777765 2211 11 35
Q ss_pred CeeEEEecCC
Q 016694 140 SVVHVTTDNK 149 (384)
Q Consensus 140 ~L~~L~i~~~ 149 (384)
+|++|++.++
T Consensus 212 ~L~~L~L~~~ 221 (594)
T 2p1m_B 212 NLKSLKLNRA 221 (594)
T ss_dssp TCCEEECCTT
T ss_pred CCcEEecCCC
Confidence 6777777654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.8e-15 Score=138.22 Aligned_cols=224 Identities=18% Similarity=0.160 Sum_probs=151.0
Q ss_pred CCCceEecCCCcCcceecccCCCC-CCCCCCccEEEeecCCCCcccC--chhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~-i~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
++|++|+++++ .+..+ |.. +..+++|++|++++| .++... +.. ...+++|++|++++| .+..++....
T Consensus 28 ~~l~~L~L~~n-~l~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~- 98 (306)
T 2z66_A 28 SSATRLELESN-KLQSL----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFL- 98 (306)
T ss_dssp TTCCEEECCSS-CCCCC----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEE-
T ss_pred CCCCEEECCCC-ccCcc----CHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC-ccccChhhcC-
Confidence 58999999999 57665 543 578999999999998 555442 233 457999999999999 7877765432
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 161 (384)
.+++|++|+++++. ++.++. ......+++|++|+++++. ++..+
T Consensus 99 ---------~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~------------------------ 142 (306)
T 2z66_A 99 ---------GLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTH-TRVAF------------------------ 142 (306)
T ss_dssp ---------TCTTCCEEECTTSE-EESSTT-TTTTTTCTTCCEEECTTSC-CEECS------------------------
T ss_pred ---------CCCCCCEEECCCCc-cccccc-chhhhhccCCCEEECCCCc-CCccc------------------------
Confidence 78999999999886 555543 2346678999999998874 22110
Q ss_pred ccCCcccccCCccccCCccEEeccccccccc--ccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeec
Q 016694 162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQH--LWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSK 238 (384)
Q Consensus 162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~ 238 (384)
...++.+++|++|+++++. +.. ++. ....+++|++|+++++. ++.+ |..+..+++|++|++++
T Consensus 143 --------~~~~~~l~~L~~L~l~~n~-l~~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 143 --------NGIFNGLSSLEVLKMAGNS-FQENFLPD----IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp --------TTTTTTCTTCCEEECTTCE-EGGGEECS----CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred --------hhhcccCcCCCEEECCCCc-cccccchh----HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC
Confidence 0112267888889888873 322 111 13567889999998874 4444 55677888999999988
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeee-cccceeecccC
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCL 297 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c 297 (384)
+. ++.+.. ..+..+++|++|+++++. +...... ....+ ++|++|+++++
T Consensus 209 N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 209 NN-FFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKKQ-------ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp SC-CSBCCS-GGGTTCTTCCEEECTTSC-CCBCSSS-------SCCCCCTTCCEEECTTC
T ss_pred Cc-cCccCh-hhccCcccCCEeECCCCC-CcccCHH-------HHHhhhccCCEEEccCC
Confidence 74 555422 234667888888888754 4333211 11113 36666666654
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=2.8e-18 Score=171.16 Aligned_cols=218 Identities=17% Similarity=0.160 Sum_probs=123.6
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
.+++|++|+++++. +... .+..+. .+++|++|++.+|..++......++.++++|++|++++| .+.+..... .
T Consensus 103 ~~~~L~~L~L~~~~-~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~-l 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDD---CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHW-L 176 (594)
T ss_dssp HCTTCCEEEEESCB-CCHH---HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGG-G
T ss_pred hCCCCCeEEeeCcE-EcHH---HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHH-H
Confidence 46899999999984 4321 022333 589999999999977666444455678999999999999 455432211 1
Q ss_pred cccccccCCcccccceeccCccc-ccc--ccccCcccccCCCCceeEeeccCCCccccc-----CCCeeEEEecCCCCcc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLP-KLK--RFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK 153 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~i~~~~~~~ 153 (384)
.... ..+++|++|+++++. .+. .+.. ....+++|++|++++|..++.++ .++|++|.+..+....
T Consensus 177 ~~~~----~~~~~L~~L~l~~~~~~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 249 (594)
T 2p1m_B 177 SHFP----DTYTSLVSLNISCLASEVSFSALER---LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEV 249 (594)
T ss_dssp GGSC----TTCCCCCEEECTTCCSCCCHHHHHH---HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCC
T ss_pred HHHh----hcCCcCcEEEecccCCcCCHHHHHH---HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCcc
Confidence 1111 267899999999885 111 1111 23457999999999987666544 4678888876543210
Q ss_pred cc----cc-ccccccCCcccc-----------cCCccccCCccEEecccccccccccccccccccccccccEEeeccCcc
Q 016694 154 LT----SE-ENFFLTDQIQPL-----------FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 217 (384)
Q Consensus 154 ~~----~~-~~~~~~~~l~~l-----------~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~ 217 (384)
.. .- ..+..|..+..+ ......+++|++|+++++. +...... .....+++|++|++.+|..
T Consensus 250 ~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~--~~~~~~~~L~~L~l~~~~~ 326 (594)
T 2p1m_B 250 RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLV--KLLCQCPKLQRLWVLDYIE 326 (594)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHH--HHHTTCTTCCEEEEEGGGH
T ss_pred chhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHH--HHHhcCCCcCEEeCcCccC
Confidence 00 00 011122222211 1111246788888887774 3321000 0013556677777766521
Q ss_pred cccccCCcccCCCcCEEEe
Q 016694 218 LQKLVTPSWHLENLATLEV 236 (384)
Q Consensus 218 l~~l~~~~~~~~~L~~L~l 236 (384)
-..++.....+++|++|++
T Consensus 327 ~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 1112111223556666666
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.5e-15 Score=147.69 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+++|++|++++| .+++.++.. ++.+++|++|++++| .+.+.++.. .+++|++|+++++. ++.++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~l~-----------~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLDLE-----------SLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEEECT-----------TCTTCCEEECCSSE-EEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcccc-----------cCCCCCEEEecCCc-CCCCC
Confidence 3458888888887 667665543 468888888888888 676655411 67778888887775 55554
Q ss_pred cCcccccCCCCceeEeeccC
Q 016694 111 NFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c 130 (384)
. .++|++|++++|
T Consensus 97 ~-------~~~L~~L~L~~N 109 (487)
T 3oja_A 97 V-------GPSIETLHAANN 109 (487)
T ss_dssp E-------CTTCCEEECCSS
T ss_pred C-------CCCcCEEECcCC
Confidence 4 366777777665
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.5e-17 Score=165.81 Aligned_cols=159 Identities=10% Similarity=-0.010 Sum_probs=81.3
Q ss_pred cccccccEEeeccCcccccccCCcccCCCcCEEEeec----------CCCCeeecccccccccCcccEEeecccccccEe
Q 016694 202 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 271 (384)
Q Consensus 202 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~----------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 271 (384)
..+++|++|++.++..-..++.....+++|++|++++ |+.+++......+..+++|++|+++ |..+...
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHH
Confidence 3455555555553211112222223456666666664 5555543333334456777777773 3333211
Q ss_pred cccccCccccceeeecccceeeccc---CCCCceecCC----CcccCCCCccEEEeccCCC-CCc-cCCCC-cCCCCCee
Q 016694 272 IQLQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVVVRQCPT-MKI-FSQGV-VDAPKLNK 341 (384)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~l~~~----~~~~~~~~L~~L~l~~c~~-l~~-lp~~~-~~~~~L~~ 341 (384)
.. ......+++|++|++.. |..+++.+.. .....+++|++|+++.|.. ++. .+..+ ..+++|++
T Consensus 394 ~~------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 394 SL------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp HH------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred HH------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 10 00111266788887763 4556553221 1134578888888877653 221 11112 23678888
Q ss_pred eccCCCCCCCCccccCCchHHHHHHHHhhccccccc
Q 016694 342 VKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKI 377 (384)
Q Consensus 342 l~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 377 (384)
++++.|. .. ...+..++..+++++.+
T Consensus 468 L~L~~n~-------l~---~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 468 MLLGYVG-------ES---DEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp EEECSCC-------SS---HHHHHHHHTCCTTCCEE
T ss_pred eeccCCC-------CC---HHHHHHHHhcCcccCee
Confidence 8888771 11 23566666666666554
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=4.5e-15 Score=134.12 Aligned_cols=221 Identities=16% Similarity=0.143 Sum_probs=124.0
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++..+. .+..+ |.. ..++|++|+++++ +++.+++.. ++.+++|++|++++| .+.++.+....
T Consensus 14 ~~~~c~~~-~l~~i----p~~--~~~~l~~L~l~~n-~i~~~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~------ 77 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAV----PVG--IPAASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARIDAAAFT------ 77 (285)
T ss_dssp CEEECCSS-CCSSC----CTT--CCTTCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred eEEEcCcC-CcccC----CcC--CCCCceEEEeeCC-cCCccCHHH-cccCCCCCEEECCCC-ccceeCHhhcC------
Confidence 34555554 45554 543 3568889999887 677765443 468888999999888 77777554432
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ 167 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 167 (384)
.+++|++|+++++..++.++. .....+++|++|+++++. ++.++.
T Consensus 78 ---~l~~L~~L~l~~n~~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~----------------------------- 122 (285)
T 1ozn_A 78 ---GLALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRCG-LQELGP----------------------------- 122 (285)
T ss_dssp ---TCTTCCEEECCSCTTCCCCCT--TTTTTCTTCCEEECTTSC-CCCCCT-----------------------------
T ss_pred ---CccCCCEEeCCCCCCccccCH--HHhcCCcCCCEEECCCCc-CCEECH-----------------------------
Confidence 678888998888865666643 245667888888888863 222210
Q ss_pred cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeec
Q 016694 168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVL 246 (384)
Q Consensus 168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~ 246 (384)
..++.+++|++|+++++ .+..+.... ...+++|++|+++++ .++.++. .+..+++|++|+++++. ++.+.
T Consensus 123 ---~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 193 (285)
T 1ozn_A 123 ---GLFRGLAALQYLYLQDN-ALQALPDDT---FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVH 193 (285)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred ---hHhhCCcCCCEEECCCC-cccccCHhH---hccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccC
Confidence 01114555666666554 233322111 134556666666654 3444433 24555666666666653 33331
Q ss_pred ccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccC
Q 016694 247 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 297 (384)
Q Consensus 247 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 297 (384)
+..+..+++|++|+++++ .+..++.. ....+++|++|+++++
T Consensus 194 -~~~~~~l~~L~~L~l~~n-~l~~~~~~-------~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 194 -PHAFRDLGRLMTLYLFAN-NLSALPTE-------ALAPLRALQYLRLNDN 235 (285)
T ss_dssp -TTTTTTCTTCCEEECCSS-CCSCCCHH-------HHTTCTTCCEEECCSS
T ss_pred -HhHccCcccccEeeCCCC-cCCcCCHH-------HcccCcccCEEeccCC
Confidence 223345566666666653 23332211 1112556666666554
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=2.7e-17 Score=164.01 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=70.1
Q ss_pred ccccccEEeeccCccccc-ccCCcc-cCCCcCEEEeec---CCCCeeec----ccccccccCcccEEeeccccc-ccEec
Q 016694 203 AFANLIRLKISECSKLQK-LVTPSW-HLENLATLEVSK---CHGLINVL----TLSTSESLVNLGRMKIADCKM-IEQII 272 (384)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~-l~~~~~-~~~~L~~L~l~~---c~~l~~l~----~~~~~~~l~~L~~L~l~~c~~-l~~~~ 272 (384)
.+++|++|++. |..++. .+..+. .+++|+.|++++ |+.+++.+ ....+..+++|++|+++.|.. +...
T Consensus 376 ~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~- 453 (592)
T 3ogk_B 376 GCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL- 453 (592)
T ss_dssp HCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-
T ss_pred hCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-
Confidence 35566666662 233321 111222 256666666663 34444421 112234566777777765442 1110
Q ss_pred ccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCc--cCCCCcCCCCCeeeccCCC
Q 016694 273 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI--FSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~~~~L~~l~i~~~ 347 (384)
+.......+++|++|++++|. +++.........+++|++|++++|+ ++. ++.....+++|+++++++|
T Consensus 454 -----~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 454 -----GLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp -----HHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred -----HHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 000111126677777777653 4432221223567888888888887 432 3333345788888888888
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.7e-15 Score=147.47 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=79.9
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ .|..++.+++|++|++++| .+++.++ ++.+++|++|++++| .+..++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQI---SAADLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN-YVQELL------ 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCC---CGGGGTTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSS-EEEEEE------
T ss_pred cCCCccEEEeeCC-cCCCC---CHHHHhCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCC-cCCCCC------
Confidence 3468999999999 56654 1456889999999999998 6777655 578999999999999 787765
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
..++|++|+++++. ++.++. ..+++|+.|+++++.
T Consensus 97 --------~~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANNK 131 (487)
T ss_dssp --------ECTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSSC
T ss_pred --------CCCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCCC
Confidence 34789999999987 665554 357899999999864
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=3.1e-15 Score=131.61 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=50.5
Q ss_pred EEeeccCcccccccCC-cccCCCcC-EEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeee
Q 016694 209 RLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF 286 (384)
Q Consensus 209 ~L~l~~~~~l~~l~~~-~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 286 (384)
+|++++++.++.++.. +..+++|+ .|+++++ .++.++.. .+.. ++|++|+++++..++.++.. ....+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~-------~~~~l 203 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKD-------AFGGV 203 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-TTTT-CEEEEEECTTCTTCCEECTT-------TTTTC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHH-------Hhhcc
Confidence 5666555445554432 44556666 6666654 24444221 1122 56666666664345544322 01114
Q ss_pred -cccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694 287 -EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 324 (384)
Q Consensus 287 -~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~ 324 (384)
++|+.|++++ ..++.++. ..+++|++|.+.++.
T Consensus 204 ~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 204 YSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp SBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC-
T ss_pred ccCCcEEECCC-CccccCCh----hHhccCceeeccCcc
Confidence 5666666665 34555433 146667777766654
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=7.8e-15 Score=132.58 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=123.7
Q ss_pred cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694 36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN 115 (384)
Q Consensus 36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 115 (384)
++++.++. .++.+|. +-.++|++|+++++ .+..+++.... .+++|++|+++++. ++.+.. ..
T Consensus 14 ~~~~c~~~-~l~~ip~----~~~~~l~~L~l~~n-~i~~~~~~~~~---------~~~~L~~L~l~~n~-l~~~~~--~~ 75 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPV----GIPAASQRIFLHGN-RISHVPAASFR---------ACRNLTILWLHSNV-LARIDA--AA 75 (285)
T ss_dssp CEEECCSS-CCSSCCT----TCCTTCSEEECTTS-CCCEECTTTTT---------TCTTCCEEECCSSC-CCEECT--TT
T ss_pred eEEEcCcC-CcccCCc----CCCCCceEEEeeCC-cCCccCHHHcc---------cCCCCCEEECCCCc-cceeCH--hh
Confidence 45565554 4555532 12367777777777 66666544322 56677777777664 444422 14
Q ss_pred ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694 116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 195 (384)
Q Consensus 116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 195 (384)
...+++|++|+++++..++.++. ..++.+++|++|+++++ .+..+..
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~ 122 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDP--------------------------------ATFHGLGRLHTLHLDRC-GLQELGP 122 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCT--------------------------------TTTTTCTTCCEEECTTS-CCCCCCT
T ss_pred cCCccCCCEEeCCCCCCccccCH--------------------------------HHhcCCcCCCEEECCCC-cCCEECH
Confidence 45567777777777643442210 01125667777777766 3333221
Q ss_pred cccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEeccc
Q 016694 196 ENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQL 274 (384)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 274 (384)
.. ...+++|++|+++++ .++.++.. +..+++|++|+++++ .++.++. ..+..+++|++|+++++. +..+...
T Consensus 123 ~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~ 195 (285)
T 1ozn_A 123 GL---FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNR-VAHVHPH 195 (285)
T ss_dssp TT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred hH---hhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH-HHhcCccccCEEECCCCc-ccccCHh
Confidence 11 245677777777775 34444433 556777777777775 3555422 234566777777777743 4444221
Q ss_pred ccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694 275 QVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 324 (384)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~ 324 (384)
....+++|+.|+++++ .++.++.. .+..+++|++|++++++
T Consensus 196 -------~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 196 -------AFRDLGRLMTLYLFAN-NLSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -------TTTTCTTCCEEECCSS-CCSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred -------HccCcccccEeeCCCC-cCCcCCHH-HcccCcccCEEeccCCC
Confidence 1112667777777764 44444321 24456777777777765
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=9.4e-15 Score=136.12 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=149.6
Q ss_pred eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCc-ceecccccccccccc
Q 016694 9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL-EEVLHLEELNADKEH 87 (384)
Q Consensus 9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~ 87 (384)
.++-++. ++.+| |..+ .+++++|+|++| +++.+++. .++++++|++|++++| .+ +.++...+.
T Consensus 13 ~v~C~~~-~Lt~i----P~~l--~~~l~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~------ 76 (350)
T 4ay9_X 13 VFLCQES-KVTEI----PSDL--PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQN-DVLEVIEADVFS------ 76 (350)
T ss_dssp EEEEEST-TCCSC----CTTC--CTTCSEEEEESC-CCSEECTT-SSTTCTTCCEEEEECC-TTCCEECTTSBC------
T ss_pred EEEecCC-CCCcc----CcCc--CCCCCEEEccCC-cCCCcCHH-HHcCCCCCCEEECcCC-CCCCccChhHhh------
Confidence 3343443 45555 6543 357788888877 66766443 2457778888888877 44 334333321
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ 167 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 167 (384)
.++++.++.+.++..++.++. .....+++|++|+++++. ++.++..
T Consensus 77 ---~L~~l~~~l~~~~N~l~~l~~--~~f~~l~~L~~L~l~~n~-l~~~~~~---------------------------- 122 (350)
T 4ay9_X 77 ---NLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTG-IKHLPDV---------------------------- 122 (350)
T ss_dssp ---SCTTCCEEEEEEETTCCEECT--TSBCCCTTCCEEEEEEEC-CSSCCCC----------------------------
T ss_pred ---cchhhhhhhcccCCcccccCc--hhhhhccccccccccccc-cccCCch----------------------------
Confidence 455666655554555666654 234567777777777642 3322100
Q ss_pred cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecc
Q 016694 168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT 247 (384)
Q Consensus 168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 247 (384)
......++..+++.++..+..++...+. .....++.|+++++ .++.++.......+|+++.+.+++.++.++.
T Consensus 123 ----~~~~~~~l~~l~l~~~~~i~~l~~~~f~--~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 123 ----HKIHSLQKVLLDIQDNINIHTIERNSFV--GLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ----TTCCBSSCEEEEEESCTTCCEECTTSST--TSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred ----hhcccchhhhhhhccccccccccccchh--hcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCH
Confidence 0003445667777666566655443221 22346778888874 5777777666667888888888777777732
Q ss_pred cccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 016694 248 LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 322 (384)
Q Consensus 248 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~ 322 (384)
..+..+++|++|+++++ .++.++.. .+.+|++|.+.++.+++.++. ...+++|+.+++..
T Consensus 196 -~~f~~l~~L~~LdLs~N-~l~~lp~~----------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 196 -DVFHGASGPVILDISRT-RIHSLPSY----------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp -TTTTTEECCSEEECTTS-CCCCCCSS----------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred -HHhccCcccchhhcCCC-CcCccChh----------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 34567888888888874 56666532 277888888888888888764 56788888888754
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=2.1e-14 Score=133.69 Aligned_cols=251 Identities=14% Similarity=0.117 Sum_probs=180.2
Q ss_pred CCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccc
Q 016694 26 ALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK 105 (384)
Q Consensus 26 p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 105 (384)
|..++.+.. ++++.++. +++.+|. .+ .+++++|++++| .++.+++..+. .+++|++|+++++..
T Consensus 3 p~~~C~C~~-~~v~C~~~-~Lt~iP~-~l---~~~l~~L~Ls~N-~i~~i~~~~f~---------~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQES-KVTEIPS-DL---PRNAIELRFVLT-KLRVIQKGAFS---------GFGDLEKIEISQNDV 66 (350)
T ss_dssp CCSSSEEET-TEEEEEST-TCCSCCT-TC---CTTCSEEEEESC-CCSEECTTSST---------TCTTCCEEEEECCTT
T ss_pred CCCccEeeC-CEEEecCC-CCCccCc-Cc---CCCCCEEEccCC-cCCCcCHHHHc---------CCCCCCEEECcCCCC
Confidence 444555544 67788776 7888753 22 268999999999 89999876543 789999999999986
Q ss_pred ccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecc
Q 016694 106 LKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 185 (384)
Q Consensus 106 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~ 185 (384)
++.++. .....++++.++.+..+..++.++.. .++.+++|+.|+++
T Consensus 67 ~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~~--------------------------------~f~~l~~L~~L~l~ 112 (350)
T 4ay9_X 67 LEVIEA--DVFSNLPKLHEIRIEKANNLLYINPE--------------------------------AFQNLPNLQYLLIS 112 (350)
T ss_dssp CCEECT--TSBCSCTTCCEEEEEEETTCCEECTT--------------------------------SBCCCTTCCEEEEE
T ss_pred CCccCh--hHhhcchhhhhhhcccCCcccccCch--------------------------------hhhhcccccccccc
Confidence 666654 23456777777766666666644211 12268899999998
Q ss_pred cccccccccccccccccccccccEEeeccCcccccccCC-cccC-CCcCEEEeecCCCCeeecccccccccCcccEEeec
Q 016694 186 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHL-ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 263 (384)
Q Consensus 186 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 263 (384)
++ .+..++... .....++..|++.++..+..++.. +... ..++.|+++++ .++.++ ..+....+|+++.+.
T Consensus 113 ~n-~l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~--~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 113 NT-GIKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH--NSAFNGTQLDELNLS 185 (350)
T ss_dssp EE-CCSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC--TTSSTTEEEEEEECT
T ss_pred cc-ccccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC--hhhccccchhHHhhc
Confidence 87 455443321 134557888999888888887653 3333 46888999986 577773 334456789999999
Q ss_pred ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeeec
Q 016694 264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVK 343 (384)
Q Consensus 264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l~ 343 (384)
+++.++.++.. ....+++|++|+++++ +++.++.. .+..|++|.+.+|..++.+|. +..+++|+.++
T Consensus 186 ~~n~l~~i~~~-------~f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 186 DNNNLEELPND-------VFHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp TCTTCCCCCTT-------TTTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEE
T ss_pred cCCcccCCCHH-------HhccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-chhCcChhhCc
Confidence 88888877643 1223899999999985 78888652 378899999999999999994 56789999999
Q ss_pred cCC
Q 016694 344 PTE 346 (384)
Q Consensus 344 i~~ 346 (384)
+.+
T Consensus 253 l~~ 255 (350)
T 4ay9_X 253 LTY 255 (350)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=6.1e-15 Score=134.87 Aligned_cols=188 Identities=19% Similarity=0.263 Sum_probs=95.5
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+++|++|++.++ .+..+ + .+..+++|++|++++| .++++++ +.++++|++|++++| .+..++...
T Consensus 40 l~~L~~L~l~~~-~i~~l----~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~---- 104 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI----E-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVSAIA---- 104 (308)
T ss_dssp HHTCCEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCGGGT----
T ss_pred cCCcCEEEeeCC-CccCc----h-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCchhhc----
Confidence 345555555555 34432 2 2445555555555555 4444433 345555555555555 444442111
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
.+++|++|+++++. ++.++. ...+++|++|+++++. ++.++
T Consensus 105 -------~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~~-------------------------- 145 (308)
T 1h6u_A 105 -------GLQSIKTLDLTSTQ-ITDVTP----LAGLSNLQVLYLDLNQ-ITNIS-------------------------- 145 (308)
T ss_dssp -------TCTTCCEEECTTSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCG--------------------------
T ss_pred -------CCCCCCEEECCCCC-CCCchh----hcCCCCCCEEECCCCc-cCcCc--------------------------
Confidence 45555555555554 333322 3445555555555541 22110
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCe
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 243 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 243 (384)
. .+.+++|+.|+++++ .+..+.. ...+++|+.|+++++ .++.++. +..+++|+.|+++++. ++
T Consensus 146 ----~----l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~ 208 (308)
T 1h6u_A 146 ----P----LAGLTNLQYLSIGNA-QVSDLTP-----LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-IS 208 (308)
T ss_dssp ----G----GGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CC
T ss_pred ----c----ccCCCCccEEEccCC-cCCCChh-----hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cC
Confidence 0 124666677776665 3333211 245666777777665 3444433 5566667777777653 44
Q ss_pred eecccccccccCcccEEeeccc
Q 016694 244 NVLTLSTSESLVNLGRMKIADC 265 (384)
Q Consensus 244 ~l~~~~~~~~l~~L~~L~l~~c 265 (384)
.+. .+..+++|+.|+++++
T Consensus 209 ~~~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 209 DVS---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp BCG---GGTTCTTCCEEEEEEE
T ss_pred ccc---cccCCCCCCEEEccCC
Confidence 442 1455666777777664
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.2e-14 Score=127.89 Aligned_cols=203 Identities=12% Similarity=0.098 Sum_probs=134.6
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+|++|++++| +++.+++.. ++++++|++|++++|..++.+++.... .+++|++|+++++..++.++.
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~~~f~---------~l~~L~~L~l~~~n~l~~i~~- 98 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQLESHSFY---------NLSKVTHIEIRNTRNLTYIDP- 98 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEECTTTEE---------SCTTCCEEEEEEETTCCEECT-
T ss_pred CcccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCcceeCHhHcC---------CCcCCcEEECCCCCCeeEcCH-
Confidence 47888898887 677775533 567888999999888337777664432 678888888887555777664
Q ss_pred cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCcc---EEecccccc
Q 016694 113 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHK 189 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~ 189 (384)
.....+++|++|+++++. ++.+| . ++.+++|+ .|+++++..
T Consensus 99 -~~f~~l~~L~~L~l~~n~-l~~lp---------------------------~-------~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 99 -DALKELPLLKFLGIFNTG-LKMFP---------------------------D-------LTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp -TSEECCTTCCEEEEEEEC-CCSCC---------------------------C-------CTTCCBCCSEEEEEEESCTT
T ss_pred -HHhCCCCCCCEEeCCCCC-Ccccc---------------------------c-------cccccccccccEEECCCCcc
Confidence 234568888889888863 33222 0 11345555 888877755
Q ss_pred ccccccccccccccccccc-EEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccccc-CcccEEeeccccc
Q 016694 190 VQHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADCKM 267 (384)
Q Consensus 190 l~~l~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~~c~~ 267 (384)
+..++... ...+++|+ +|+++++ .++.+|......++|++|+++++..++.++. ..+..+ ++|++|++++ +.
T Consensus 143 l~~i~~~~---~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~-N~ 216 (239)
T 2xwt_C 143 MTSIPVNA---FQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQ-TS 216 (239)
T ss_dssp CCEECTTT---TTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTT-CC
T ss_pred hhhcCccc---ccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCC-Cc
Confidence 65553322 25677888 8888775 4566766544447888888888755766632 344567 8888888887 44
Q ss_pred ccEecccccCccccceeeecccceeecccCCC
Q 016694 268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 299 (384)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 299 (384)
++.++.. .+++|+.|++.++..
T Consensus 217 l~~l~~~----------~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 217 VTALPSK----------GLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCCCT----------TCTTCSEEECTTC--
T ss_pred cccCChh----------HhccCceeeccCccC
Confidence 5544322 388888888887654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.6e-14 Score=129.81 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
++|++|++++| +++.+++.. +.++++|++|++++| .+..+++.... .+++|++|+++++. ++.++.
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~- 93 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAYQ---------SLSHLSTLILTGNP-IQSLAL- 93 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTT-TTTCTTCSEEECTTC-CCCEECTTTTT---------TCTTCCEEECTTCC-CCEECT-
T ss_pred CCccEEECCCC-cccccCHhH-hccccCCcEEECCCC-cCCccCHHHcc---------CCcCCCEEECCCCc-cCccCh-
Confidence 45666666665 555554322 345666666666666 55555443321 45666666666654 333332
Q ss_pred cccccCCCCceeEeeccC
Q 016694 113 TENIIEMPELRYLAIENC 130 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c 130 (384)
.....+++|++|+++++
T Consensus 94 -~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 94 -GAFSGLSSLQKLVAVET 110 (276)
T ss_dssp -TTTTTCTTCCEEECTTS
T ss_pred -hhhcCCccccEEECCCC
Confidence 13445666666666654
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=2e-16 Score=145.10 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=151.8
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc-c--ccccccCCcccccceeccCccccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL-N--ADKEHIGPLFPKLFELTLMDLPKL 106 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~l 106 (384)
+..++|++|++++| .+ .+ |..+... |++|+++++ .+....-.... . .... .+++|++|+++++..-
T Consensus 40 ~~~~~L~~l~l~~n-~l-~~-p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~----~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVD-TE-AD-LGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVL----GISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEECTTHHHHCC-TT-CC-CHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHH----TTSCCCEEEEEEEBCB
T ss_pred ccCCCceeEeeccc-cc-cc-HHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhc----CcCCccEEEccCCccc
Confidence 45667888888887 44 44 4333322 777778777 55432111100 0 0000 3678888888888733
Q ss_pred cccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccc
Q 016694 107 KRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 186 (384)
Q Consensus 107 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 186 (384)
..++. ......+++|++|+++++. ++..| . .+..+.. ...++|++|++++
T Consensus 109 ~~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~-------------------------~~~~l~~--~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 109 GTAPP-PLLEATGPDLNILNLRNVS-WATRD-A-------------------------WLAELQQ--WLKPGLKVLSIAQ 158 (312)
T ss_dssp SCCCC-CSSSCCSCCCSEEEEESCB-CSSSS-S-------------------------HHHHHHT--TCCTTCCEEEEES
T ss_pred chhHH-HHHHhcCCCccEEEccCCC-Ccchh-H-------------------------HHHHHHH--hhcCCCcEEEeeC
Confidence 34544 1112678888888888853 33221 0 0000000 0126788888877
Q ss_pred ccccccccccccccccccccccEEeeccCccccc--ccCCc--ccCCCcCEEEeecCCCCeeec--ccccccccCcccEE
Q 016694 187 LHKVQHLWKENDESNKAFANLIRLKISECSKLQK--LVTPS--WHLENLATLEVSKCHGLINVL--TLSTSESLVNLGRM 260 (384)
Q Consensus 187 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~--~~~~~L~~L~l~~c~~l~~l~--~~~~~~~l~~L~~L 260 (384)
+ .+..+.... ...+++|++|+++++..... ++..+ ..+++|++|+++++. ++.+. ....+..+++|++|
T Consensus 159 N-~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 159 A-HSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp C-SCCCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEE
T ss_pred C-CCccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEE
Confidence 6 344432221 25677888888887654332 22223 677888888888874 55331 11233467889999
Q ss_pred eecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCe
Q 016694 261 KIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLN 340 (384)
Q Consensus 261 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~ 340 (384)
+++++. +...+.. .....+++|++|+++++ .++.++.. .. ++|++|+++++ +++.+|. +..+++|+
T Consensus 234 ~Ls~N~-l~~~~~~------~~~~~l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 234 DLSHNS-LRDAAGA------PSCDWPSQLNSLNLSFT-GLKQVPKG--LP--AKLSVLDLSYN-RLDRNPS-PDELPQVG 299 (312)
T ss_dssp ECTTSC-CCSSCCC------SCCCCCTTCCEEECTTS-CCSSCCSS--CC--SEEEEEECCSS-CCCSCCC-TTTSCEEE
T ss_pred ECCCCc-CCcccch------hhhhhcCCCCEEECCCC-ccChhhhh--cc--CCceEEECCCC-CCCCChh-HhhCCCCC
Confidence 998854 4433211 01122688999999885 56655442 22 79999999887 5677776 67789999
Q ss_pred eeccCCC
Q 016694 341 KVKPTEE 347 (384)
Q Consensus 341 ~l~i~~~ 347 (384)
++++++|
T Consensus 300 ~L~L~~N 306 (312)
T 1wwl_A 300 NLSLKGN 306 (312)
T ss_dssp EEECTTC
T ss_pred EEeccCC
Confidence 9999988
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=5.6e-16 Score=143.39 Aligned_cols=228 Identities=18% Similarity=0.138 Sum_probs=128.4
Q ss_pred CCceEecCCCcCcceecccCCCCCCCC--CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee-ccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFF--NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV-LHLEELN 82 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l--~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~ 82 (384)
.++.++++++. +. +..+..+ ++++.|++.++ .+.+.++. +.++++|++|++++| .+... .+..
T Consensus 48 ~~~~l~l~~~~-~~------~~~~~~~~~~~l~~L~l~~n-~l~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~--- 113 (336)
T 2ast_B 48 LWQTLDLTGKN-LH------PDVTGRLLSQGVIAFRCPRS-FMDQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGI--- 113 (336)
T ss_dssp TSSEEECTTCB-CC------HHHHHHHHHTTCSEEECTTC-EECSCCCS--CCCCBCCCEEECTTC-EECHHHHHHH---
T ss_pred hheeecccccc-CC------HHHHHhhhhccceEEEcCCc-cccccchh--hccCCCCCEEEccCC-CcCHHHHHHH---
Confidence 36677777662 22 1123344 67888888876 45554443 346788888888887 45431 1111
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
.. .+++|++|+++++..-...+. .+..+++|++|++++|..+++.
T Consensus 114 --~~----~~~~L~~L~L~~~~l~~~~~~---~l~~~~~L~~L~L~~~~~l~~~-------------------------- 158 (336)
T 2ast_B 114 --LS----QCSKLQNLSLEGLRLSDPIVN---TLAKNSNLVRLNLSGCSGFSEF-------------------------- 158 (336)
T ss_dssp --HT----TBCCCSEEECTTCBCCHHHHH---HHTTCTTCSEEECTTCBSCCHH--------------------------
T ss_pred --Hh----hCCCCCEEeCcCcccCHHHHH---HHhcCCCCCEEECCCCCCCCHH--------------------------
Confidence 11 677888888887752222332 4456788888888887655531
Q ss_pred cCCcccccCCccccCCccEEecccccccccccccccccccccc-cccEEeeccCc-cc--ccccCCcccCCCcCEEEeec
Q 016694 163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHLENLATLEVSK 238 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~~~~L~~L~l~~ 238 (384)
.+..+ .+.+++|++|++++|..+...... .....++ +|++|++++|. .+ ..++..+..+++|++|++++
T Consensus 159 --~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 159 --ALQTL---LSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp --HHHHH---HHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred --HHHHH---HhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 00111 114667777777776444431000 0124566 77777777764 23 23444455677777777777
Q ss_pred CCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccC
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 297 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 297 (384)
|..+++.. ...+..+++|++|++++|..+... + ......+++|++|++++|
T Consensus 232 ~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~------~-~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPE------T-LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGG------G-GGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHH------H-HHHHhcCCCCCEEeccCc
Confidence 76444332 223456677778887776533211 0 001123777888888777
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=5e-14 Score=127.62 Aligned_cols=199 Identities=15% Similarity=0.053 Sum_probs=141.3
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++++++++.++ .+..+ |..+ .+++++|++++| +++.+++.. +.++++|++|++++| .+..++...
T Consensus 7 ~~l~~l~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-- 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTAL----PPDL--PKDTTILHLSEN-LLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQVDG-- 74 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSC----CSCC--CTTCCEEECTTS-CCSEEEGGG-GTTCTTCCEEECTTS-CCCEEECCS--
T ss_pred cccCCccEEECCCC-CCCcC----CCCC--CCCCCEEEcCCC-cCCccCHHH-hhcCCCCCEEECCCC-ccCcccCCC--
Confidence 35788999999887 67766 6554 378999999998 677765443 568999999999999 788776542
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 161 (384)
.+++|++|+++++. ++.++. ....+++|++|+++++ .++.++.
T Consensus 75 ---------~l~~L~~L~Ls~N~-l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~----------------------- 117 (290)
T 1p9a_G 75 ---------TLPVLGTLDLSHNQ-LQSLPL---LGQTLPALTVLDVSFN-RLTSLPL----------------------- 117 (290)
T ss_dssp ---------CCTTCCEEECCSSC-CSSCCC---CTTTCTTCCEEECCSS-CCCCCCS-----------------------
T ss_pred ---------CCCcCCEEECCCCc-CCcCch---hhccCCCCCEEECCCC-cCcccCH-----------------------
Confidence 78899999999886 666765 5667888999988885 3332210
Q ss_pred ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCc-ccCCCcCEEEeecCC
Q 016694 162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCH 240 (384)
Q Consensus 162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~ 240 (384)
..++.+++|+.|+++++ .+..++... ...+++|+.|+++++ .++.+|... ..+++|+.|+++++.
T Consensus 118 ---------~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 118 ---------GALRGLGELQELYLKGN-ELKTLPPGL---LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp ---------STTTTCTTCCEEECTTS-CCCCCCTTT---TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------HHHcCCCCCCEEECCCC-CCCccChhh---cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 01226778888888877 455543321 246778888888875 466776543 568888888888864
Q ss_pred CCeeecccccccccCcccEEeecccc
Q 016694 241 GLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 241 ~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
++.+ +..+...++|+.+++++++
T Consensus 184 -l~~i--p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 -LYTI--PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCCC--CTTTTTTCCCSEEECCSCC
T ss_pred -CCcc--ChhhcccccCCeEEeCCCC
Confidence 6655 4445566788888887643
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.5e-16 Score=145.71 Aligned_cols=247 Identities=14% Similarity=0.117 Sum_probs=159.7
Q ss_pred CCccEEEeecCCCCcccCchhHHhcC--CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc--
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR-- 108 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 108 (384)
..++.++++++ .+. + ..+..+ ++++.|++.++ .+.+.++... .+++|++|+++++. +..
T Consensus 47 ~~~~~l~l~~~-~~~---~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~----------~~~~L~~L~L~~~~-l~~~~ 109 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH---P-DVTGRLLSQGVIAFRCPRS-FMDQPLAEHF----------SPFRVQHMDLSNSV-IEVST 109 (336)
T ss_dssp TTSSEEECTTC-BCC---H-HHHHHHHHTTCSEEECTTC-EECSCCCSCC----------CCBCCCEEECTTCE-ECHHH
T ss_pred hhheeeccccc-cCC---H-HHHHhhhhccceEEEcCCc-cccccchhhc----------cCCCCCEEEccCCC-cCHHH
Confidence 35788888876 333 2 234566 88999999988 6665544432 67889999999886 432
Q ss_pred cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694 109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 188 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 188 (384)
++. ....+++|++|++++|. ++.. .+...+.+++|++|++++|.
T Consensus 110 ~~~---~~~~~~~L~~L~L~~~~-l~~~--------------------------------~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 110 LHG---ILSQCSKLQNLSLEGLR-LSDP--------------------------------IVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp HHH---HHTTBCCCSEEECTTCB-CCHH--------------------------------HHHHHTTCTTCSEEECTTCB
T ss_pred HHH---HHhhCCCCCEEeCcCcc-cCHH--------------------------------HHHHHhcCCCCCEEECCCCC
Confidence 433 45678899999998874 3311 00011257889999999886
Q ss_pred cccccccccccc-ccccccccEEeeccCccccc--ccCCcccCC-CcCEEEeecCC-CCeeecccccccccCcccEEeec
Q 016694 189 KVQHLWKENDES-NKAFANLIRLKISECSKLQK--LVTPSWHLE-NLATLEVSKCH-GLINVLTLSTSESLVNLGRMKIA 263 (384)
Q Consensus 189 ~l~~l~~~~~~~-~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~-~L~~L~l~~c~-~l~~l~~~~~~~~l~~L~~L~l~ 263 (384)
.+.... ++. ...+++|++|++++|..++. ++..+..++ +|++|++++|. .+++...+..+..+++|++|+++
T Consensus 154 ~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 154 GFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp SCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred CCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 555310 111 25688999999999855653 455567788 99999999985 45433234456678999999999
Q ss_pred ccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCC-CCCee
Q 016694 264 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDA-PKLNK 341 (384)
Q Consensus 264 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~-~~L~~ 341 (384)
+|..++.... .....+++|++|++++|..+..-... .+..+++|++|++++| ++... ..+ ..++.
T Consensus 231 ~~~~l~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~ 297 (336)
T 2ast_B 231 DSVMLKNDCF-------QEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPH 297 (336)
T ss_dssp TCTTCCGGGG-------GGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTT
T ss_pred CCCcCCHHHH-------HHHhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcc
Confidence 8764432111 12223689999999998755443321 2556899999999988 33321 222 23555
Q ss_pred eccCCCC
Q 016694 342 VKPTEEE 348 (384)
Q Consensus 342 l~i~~~~ 348 (384)
++++.+.
T Consensus 298 L~l~~n~ 304 (336)
T 2ast_B 298 LQINCSH 304 (336)
T ss_dssp SEESCCC
T ss_pred eEEeccc
Confidence 5566653
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=2.3e-17 Score=159.38 Aligned_cols=164 Identities=15% Similarity=0.056 Sum_probs=81.7
Q ss_pred ccCCccEEeccccccccccccccccc--ccccccccEEeeccCccccc-----ccCCcccCCCcCEEEeecCCCCeeecc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDES--NKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLINVLT 247 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~--~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~l~~ 247 (384)
.+++|++|+++++ .+.......+.. ...+++|++|++++| .++. ++..+..+++|++|+++++. +++...
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~ 301 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGA 301 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHH
Confidence 4566666666665 232211000000 013566777777666 3333 44444556677777777653 332211
Q ss_pred cccc----cccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCC---ccc-CCCCccEEE
Q 016694 248 LSTS----ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN---YAL-EFPSLEHVV 319 (384)
Q Consensus 248 ~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~---~~~-~~~~L~~L~ 319 (384)
.... ...++|++|++++|. +...... ........+++|++|+++++ .+++..... ... ..++|++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~---~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS-FTAACCS---HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CBGGGHH---HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHhccCCccceeeEcCCCC-CchHHHH---HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEE
Confidence 1111 122467777777654 2211000 00111122577777777765 444432110 011 156888888
Q ss_pred eccCCCCC-----ccCCCCcCCCCCeeeccCCC
Q 016694 320 VRQCPTMK-----IFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 320 l~~c~~l~-----~lp~~~~~~~~L~~l~i~~~ 347 (384)
+++|. ++ .+|..+..+++|+++++++|
T Consensus 377 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 377 LADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 88874 44 56665556788888888877
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-13 Score=122.90 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=42.2
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSES 253 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 253 (384)
.+++|+.|+++++ .+..++... ...+++|++|+++++ .++.++. .+..+++|++|+++++ .++.++ +..+..
T Consensus 131 ~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~ 203 (270)
T 2o6q_A 131 SLTKLTYLSLGYN-ELQSLPKGV---FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVP-EGAFDS 203 (270)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTT
T ss_pred cCcCCCEEECCCC-cCCccCHhH---ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCC-HHHhcc
Confidence 4566666666655 333332211 134566666666654 3444433 2445566666666665 344432 122345
Q ss_pred cCcccEEeeccc
Q 016694 254 LVNLGRMKIADC 265 (384)
Q Consensus 254 l~~L~~L~l~~c 265 (384)
+++|+.|+++++
T Consensus 204 l~~L~~L~l~~N 215 (270)
T 2o6q_A 204 LEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEecCC
Confidence 566666666553
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=3.6e-14 Score=127.39 Aligned_cols=194 Identities=21% Similarity=0.231 Sum_probs=113.4
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
..+++|+.|++.+| .++..+. ++.+++|++|++++| .+..++... .+++|++|+++++. ++.+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~~---l~~l~~L~~L~l~~n-~l~~~~~l~-----------~l~~L~~L~L~~n~-l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQG---IQYLPNVRYLALGGN-KLHDISALK-----------ELTNLTYLILTGNQ-LQSL 100 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGGGT-----------TCTTCCEEECTTSC-CCCC
T ss_pred ccccceeeeeeCCC-Ccccccc---cccCCCCcEEECCCC-CCCCchhhc-----------CCCCCCEEECCCCc-cCcc
Confidence 45677777777776 4554432 356777777777777 565543211 56777777777765 5554
Q ss_pred ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694 110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 189 (384)
Q Consensus 110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 189 (384)
+. .....+++|++|++++|. ++.++. ..++.+++|+.|+++++ .
T Consensus 101 ~~--~~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~ 144 (272)
T 3rfs_A 101 PN--GVFDKLTNLKELVLVENQ-LQSLPD--------------------------------GVFDKLTNLTYLNLAHN-Q 144 (272)
T ss_dssp CT--TTTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred Ch--hHhcCCcCCCEEECCCCc-CCccCH--------------------------------HHhccCCCCCEEECCCC-c
Confidence 43 123567777777777752 222210 00125667777777766 4
Q ss_pred cccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccc
Q 016694 190 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 268 (384)
Q Consensus 190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 268 (384)
+..+.... ...+++|++|++++| .++.+++. +..+++|+.|+++++. ++.++ +..+..+++|++|++++++ +
T Consensus 145 l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-~ 217 (272)
T 3rfs_A 145 LQSLPKGV---FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP-W 217 (272)
T ss_dssp CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSC-B
T ss_pred cCccCHHH---hccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCC-c
Confidence 44432211 245677777777776 35555443 4567777777777764 54442 2334567777888777754 1
Q ss_pred cEecccccCccccceeeecccceeecccC
Q 016694 269 EQIIQLQVGEEAKGCVVFEELGYLGLDCL 297 (384)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 297 (384)
. .. +|+|+.|++..+
T Consensus 218 ~---~~-----------~~~l~~l~~~~n 232 (272)
T 3rfs_A 218 D---CT-----------CPGIRYLSEWIN 232 (272)
T ss_dssp C---CC-----------TTTTHHHHHHHH
T ss_pred c---cc-----------CcHHHHHHHHHH
Confidence 1 11 566777766554
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=2.9e-14 Score=130.66 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCCccEEEeecCCCCcccCchhH-HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
.+++|++|++++| ++++..|..+ ++.+++|++|++++| .+.+.+..... .... ..++|++|+++++. ++.+
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-l~~~----~~~~L~~L~L~~N~-l~~~ 164 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAE-LQQW----LKPGLKVLSIAQAH-SLNF 164 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHH-HHTT----CCTTCCEEEEESCS-CCCC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHH-HHHh----hcCCCcEEEeeCCC-Cccc
Confidence 4667777777776 4554334332 256777777777777 56555321110 0000 12667777777665 4444
Q ss_pred ccCcccccCCCCceeEeeccCC
Q 016694 110 CNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 110 ~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
+. .....+++|++|+++++.
T Consensus 165 ~~--~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 165 SC--EQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CT--TTCCCCSSCCEEECCSCT
T ss_pred hH--HHhccCCCCCEEECCCCC
Confidence 42 244566777777777654
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=2.5e-16 Score=152.12 Aligned_cols=128 Identities=18% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecCCCCcccC---chhHHhcCCCCCEEEEecccCcceeccccc
Q 016694 5 RDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEE 80 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 80 (384)
++|++|+++++ .+... |. ..+..+++|++|++++| .+.+.. ....+..+++|++|++++| .+.+......
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~---~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWA---ELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHH---HHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH
T ss_pred ccceehhhhhc-ccCchhHH---HHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHH
Confidence 56777888777 34321 11 11345777888888877 445321 1223456778888888877 5543211110
Q ss_pred ccccccccCCccc----ccceeccCcccccc-----ccccCcccccCCCCceeEeeccCCCccccc-----------CCC
Q 016694 81 LNADKEHIGPLFP----KLFELTLMDLPKLK-----RFCNFTENIIEMPELRYLAIENCPDMETFI-----------SNS 140 (384)
Q Consensus 81 ~~~~~~~~~~~~~----~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----------~~~ 140 (384)
. . .++ +|++|++++|. ++ .++. ....+++|++|+++++. ++... ..+
T Consensus 77 ~----~----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~---~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 143 (461)
T 1z7x_W 77 L----Q----GLQTPSCKIQKLSLQNCC-LTGAGCGVLSS---TLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCR 143 (461)
T ss_dssp H----H----TTCSTTCCCCEEECTTSC-CBGGGHHHHHH---HTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCC
T ss_pred H----H----HHhhCCCceeEEEccCCC-CCHHHHHHHHH---HHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCc
Confidence 0 0 222 57777777775 33 2222 44567777777777764 32210 124
Q ss_pred eeEEEecCCCC
Q 016694 141 VVHVTTDNKEP 151 (384)
Q Consensus 141 L~~L~i~~~~~ 151 (384)
|++|+++++..
T Consensus 144 L~~L~L~~n~l 154 (461)
T 1z7x_W 144 LEKLQLEYCSL 154 (461)
T ss_dssp CCEEECTTSCC
T ss_pred ceEEECCCCCC
Confidence 77777776653
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=2.4e-13 Score=121.75 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=130.7
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
+.+.+++++. .+..+ |..+ .++|++|++++| +++.+++.. ++++++|++|++++| .+..+++..+.
T Consensus 17 ~~~~l~~~~~-~l~~i----p~~~--~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~i~~~~~~---- 82 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAI----PSNI--PADTKKLDLQSN-KLSSLPSKA-FHRLTKLRLLYLNDN-KLQTLPAGIFK---- 82 (270)
T ss_dssp TTTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCSCCCTTS-SSSCTTCCEEECCSS-CCSCCCTTTTS----
T ss_pred CCCEEEccCC-CCCcc----CCCC--CCCCCEEECcCC-CCCeeCHHH-hcCCCCCCEEECCCC-ccCeeChhhhc----
Confidence 4667777776 55555 5443 367888888887 666665433 467888888888888 67766654422
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCCCcccccccc
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN 159 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~~~~~~~~~~ 159 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++. ++.++ .++|++|+++++....++.
T Consensus 83 -----~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--- 150 (270)
T 2o6q_A 83 -----ELKNLETLWVTDNK-LQALPI--GVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK--- 150 (270)
T ss_dssp -----SCTTCCEEECCSSC-CCCCCT--TTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT---
T ss_pred -----CCCCCCEEECCCCc-CCcCCH--hHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH---
Confidence 57788888888776 555554 234567888888888753 33332 3567888887765322111
Q ss_pred ccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeec
Q 016694 160 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSK 238 (384)
Q Consensus 160 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~ 238 (384)
..++.+++|++|+++++ .+..+.... ...+++|++|+++++ .++.++.. +..+++|+.|++++
T Consensus 151 -----------~~~~~l~~L~~L~L~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 151 -----------GVFDKLTSLKELRLYNN-QLKRVPEGA---FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -----------TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred -----------hHccCCcccceeEecCC-cCcEeChhH---hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecC
Confidence 01236899999999987 555543321 256899999999997 56777654 66789999999998
Q ss_pred CC
Q 016694 239 CH 240 (384)
Q Consensus 239 c~ 240 (384)
++
T Consensus 215 N~ 216 (270)
T 2o6q_A 215 NP 216 (270)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=5.6e-14 Score=128.56 Aligned_cols=209 Identities=18% Similarity=0.159 Sum_probs=116.1
Q ss_pred CCCccEEEeecCCCCcccCchhHH-hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 32 FNNLRHLVVDDCTNMLSAIPANLI-RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 32 l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
+++|++|++++| .+.+..+..++ +.+++|++|++++| .+....+.... .... .+++|++|+++++. +..++
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~-~~~~----~~~~L~~L~Ls~n~-l~~~~ 161 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE-LQQW----LKPGLKVLSIAQAH-SPAFS 161 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH-HHTT----BCSCCCEEEEECCS-SCCCC
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH-HHhh----hccCCCEEEeeCCC-cchhh
Confidence 456888888887 55555554432 57788888888887 55542211000 0001 46778888887776 44444
Q ss_pred cCcccccCCCCceeEeeccCCCccc--ccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694 111 NFTENIIEMPELRYLAIENCPDMET--FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 188 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c~~l~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 188 (384)
. .....+++|++|+++++..... ++. ....+.+++|++|+++++
T Consensus 162 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------------~~~~~~l~~L~~L~Ls~N- 207 (310)
T 4glp_A 162 C--EQVRAFPALTSLDLSDNPGLGERGLMA-------------------------------ALCPHKFPAIQNLALRNT- 207 (310)
T ss_dssp T--TSCCCCTTCCEEECCSCTTCHHHHHHT-------------------------------TSCTTSSCCCCSCBCCSS-
T ss_pred H--HHhccCCCCCEEECCCCCCccchhhhH-------------------------------HHhhhcCCCCCEEECCCC-
Confidence 2 2445677888888887643221 100 000125667777777776
Q ss_pred ccccccccccccccccccccEEeeccCcccccccCCcccC---CCcCEEEeecCCCCeeecccccccccCcccEEeeccc
Q 016694 189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 265 (384)
Q Consensus 189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~---~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 265 (384)
+++.+..........+++|++|+++++..-...|..+..+ ++|++|+++++. ++.+ +... .++|++|+++++
T Consensus 208 ~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~l--p~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 208 GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQV--PKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSC--CSCC--CSCCSCEECCSC
T ss_pred CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCch--hhhh--cCCCCEEECCCC
Confidence 4433211100001355777788887764333335555554 578888887763 5544 2222 267788888774
Q ss_pred ccccEecccccCccccceeeecccceeecccC
Q 016694 266 KMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 297 (384)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 297 (384)
.+..++. ...+++|+.|++++.
T Consensus 283 -~l~~~~~---------~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 283 -RLNRAPQ---------PDELPEVDNLTLDGN 304 (310)
T ss_dssp -CCCSCCC---------TTSCCCCSCEECSST
T ss_pred -cCCCCch---------hhhCCCccEEECcCC
Confidence 3443321 112677888887764
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=3.3e-13 Score=123.30 Aligned_cols=169 Identities=16% Similarity=0.257 Sum_probs=129.5
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|++|+++++ .+..+ +. +..+++|++|++++| .+++.+. +..+++|++|++++| .+..+++..
T Consensus 60 ~~l~~L~~L~L~~n-~i~~~----~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~l~-- 126 (308)
T 1h6u_A 60 QYLNNLIGLELKDN-QITDL----AP-LKNLTKITELELSGN-PLKNVSA---IAGLQSIKTLDLTST-QITDVTPLA-- 126 (308)
T ss_dssp GGCTTCCEEECCSS-CCCCC----GG-GTTCCSCCEEECCSC-CCSCCGG---GTTCTTCCEEECTTS-CCCCCGGGT--
T ss_pred hccCCCCEEEccCC-cCCCC----hh-HccCCCCCEEEccCC-cCCCchh---hcCCCCCCEEECCCC-CCCCchhhc--
Confidence 45789999999999 66665 44 789999999999999 5777632 578999999999999 788775422
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccc
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~ 161 (384)
.+++|++|+++++. ++.++. ...+++|+.|++++| .++.++
T Consensus 127 ---------~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n-~l~~~~------------------------ 167 (308)
T 1h6u_A 127 ---------GLSNLQVLYLDLNQ-ITNISP----LAGLTNLQYLSIGNA-QVSDLT------------------------ 167 (308)
T ss_dssp ---------TCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCG------------------------
T ss_pred ---------CCCCCCEEECCCCc-cCcCcc----ccCCCCccEEEccCC-cCCCCh------------------------
Confidence 78999999999986 555543 567889999999886 333221
Q ss_pred ccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 162 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 162 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
. .+.+++|+.|+++++ .+..+.. ...+++|++|+++++ .+..++ .+..+++|+.|++++++
T Consensus 168 ------~----l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 168 ------P----LANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ------G----GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred ------h----hcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCCe
Confidence 1 226888999999887 4544322 467889999999987 466665 37889999999999875
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.49 E-value=8.6e-13 Score=119.47 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=139.8
Q ss_pred CCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc
Q 016694 29 VSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR 108 (384)
Q Consensus 29 i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 108 (384)
+..+++++.++++++ +++.+|+. -.+++++|++++| .+..+++.... .+++|++|+++++. ++.
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~ 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPD----LPKDTTILHLSEN-LLYTFSLATLM---------PYTRLTQLNLDRAE-LTK 69 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSC----CCTTCCEEECTTS-CCSEEEGGGGT---------TCTTCCEEECTTSC-CCE
T ss_pred ccccCCccEEECCCC-CCCcCCCC----CCCCCCEEEcCCC-cCCccCHHHhh---------cCCCCCEEECCCCc-cCc
Confidence 457889999999987 77877543 2378999999999 78877655433 78899999999876 666
Q ss_pred cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694 109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 188 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 188 (384)
++. . ..+++|++|+++++ .++.+| ...+.+++|+.|+++++
T Consensus 70 ~~~---~-~~l~~L~~L~Ls~N-~l~~l~---------------------------------~~~~~l~~L~~L~l~~N- 110 (290)
T 1p9a_G 70 LQV---D-GTLPVLGTLDLSHN-QLQSLP---------------------------------LLGQTLPALTVLDVSFN- 110 (290)
T ss_dssp EEC---C-SCCTTCCEEECCSS-CCSSCC---------------------------------CCTTTCTTCCEEECCSS-
T ss_pred ccC---C-CCCCcCCEEECCCC-cCCcCc---------------------------------hhhccCCCCCEEECCCC-
Confidence 665 2 57888888888885 333221 12236888999999887
Q ss_pred ccccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccc
Q 016694 189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 267 (384)
Q Consensus 189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 267 (384)
.+..++... ...+++|++|+++++ .++.+|.. +..+++|+.|+++++ .++.++ ...+..+++|+.|+++++ .
T Consensus 111 ~l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N-~ 183 (290)
T 1p9a_G 111 RLTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQEN-S 183 (290)
T ss_dssp CCCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSS-C
T ss_pred cCcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCC-c
Confidence 555543322 356789999999986 56666554 467889999999986 466653 234567889999999884 4
Q ss_pred ccEecccccCccccceeeecccceeecccCC
Q 016694 268 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 298 (384)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 298 (384)
+..++.. ....++|+.|++.+.+
T Consensus 184 l~~ip~~--------~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTIPKG--------FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTT--------TTTTCCCSEEECCSCC
T ss_pred CCccChh--------hcccccCCeEEeCCCC
Confidence 6555432 1125578888887543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=4.9e-12 Score=113.50 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=100.5
Q ss_pred CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccC
Q 016694 59 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS 138 (384)
Q Consensus 59 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 138 (384)
++|++|++++| .+..+++.... .+++|++|+++++. ++.++. .....+++|++|+++++. ++.++.
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFF---------SFPELQVLDLSRCE-IQTIED--GAYQSLSHLSTLILTGNP-IQSLAL 93 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTT---------TCTTCSEEECTTCC-CCEECT--TTTTTCTTCCEEECTTCC-CCEECT
T ss_pred CCccEEECCCC-cccccCHhHhc---------cccCCcEEECCCCc-CCccCH--HHccCCcCCCEEECCCCc-cCccCh
Confidence 46788888777 67666553322 56677777777664 444433 133445666666666542 221100
Q ss_pred CCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCccc
Q 016694 139 NSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKL 218 (384)
Q Consensus 139 ~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l 218 (384)
..++.+++|++|+++++ .+..+..
T Consensus 94 --------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~----------------------- 117 (276)
T 2z62_A 94 --------------------------------GAFSGLSSLQKLVAVET-NLASLEN----------------------- 117 (276)
T ss_dssp --------------------------------TTTTTCTTCCEEECTTS-CCCCSTT-----------------------
T ss_pred --------------------------------hhhcCCccccEEECCCC-CccccCc-----------------------
Confidence 00114555555555554 2222211
Q ss_pred ccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccc----eeec
Q 016694 219 QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG----YLGL 294 (384)
Q Consensus 219 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~----~L~l 294 (384)
..+..+++|++|+++++. ++.+..+..+..+++|++|+++++ .+..+... ....+++|+ +|++
T Consensus 118 ----~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~-------~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 118 ----FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT-------DLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ----CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGG-------GGHHHHTCTTCCEEEEC
T ss_pred ----hhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHH-------Hhhhhhhccccceeeec
Confidence 123344445555554432 333222333444555555555553 23333211 011133333 4555
Q ss_pred ccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCC-cCCCCCeeeccCCC
Q 016694 295 DCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPTEE 347 (384)
Q Consensus 295 ~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~~~~L~~l~i~~~ 347 (384)
+++ .++.++.. .....+|++|++++|. ++.+|... ..+++|+++++++|
T Consensus 185 s~n-~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 185 SLN-PMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSS-CCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCC-cccccCcc--ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 543 34444332 2234478888887774 66666553 45778888888877
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=4.3e-13 Score=120.32 Aligned_cols=228 Identities=17% Similarity=0.183 Sum_probs=153.7
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+..+..+++.++ .+.+... ...+++|++|++.+| .+..++... .+++|++|+++++. ++.++
T Consensus 17 ~~~~l~~l~l~~~-~~~~~~~---~~~l~~L~~L~l~~~-~i~~~~~l~-----------~l~~L~~L~l~~n~-l~~~~ 79 (272)
T 3rfs_A 17 AFAETIKANLKKK-SVTDAVT---QNELNSIDQIIANNS-DIKSVQGIQ-----------YLPNVRYLALGGNK-LHDIS 79 (272)
T ss_dssp HHHHHHHHHHTCS-CTTSEEC---HHHHTTCCEEECTTS-CCCCCTTGG-----------GCTTCCEEECTTSC-CCCCG
T ss_pred hHHHHHHHHhcCc-ccccccc---cccccceeeeeeCCC-Ccccccccc-----------cCCCCcEEECCCCC-CCCch
Confidence 4455666666665 4444433 357899999999999 777665432 78899999999886 55543
Q ss_pred cCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccc
Q 016694 111 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 190 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l 190 (384)
....+++|++|++++| .++.++. ..++.+++|++|+++++ .+
T Consensus 80 ----~l~~l~~L~~L~L~~n-~l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~l 121 (272)
T 3rfs_A 80 ----ALKELTNLTYLILTGN-QLQSLPN--------------------------------GVFDKLTNLKELVLVEN-QL 121 (272)
T ss_dssp ----GGTTCTTCCEEECTTS-CCCCCCT--------------------------------TTTTTCTTCCEEECTTS-CC
T ss_pred ----hhcCCCCCCEEECCCC-ccCccCh--------------------------------hHhcCCcCCCEEECCCC-cC
Confidence 3567889999999886 3332210 01226889999999987 45
Q ss_pred ccccccccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeeccccccc
Q 016694 191 QHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE 269 (384)
Q Consensus 191 ~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 269 (384)
..+.... ...+++|++|++++| .++.+++. +..+++|+.|++++|. ++.++ +..+..+++|+.|++++|. +.
T Consensus 122 ~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~ 194 (272)
T 3rfs_A 122 QSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKDLRLYQNQ-LK 194 (272)
T ss_dssp CCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CS
T ss_pred CccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccC-HHHhcCCccCCEEECCCCc-CC
Confidence 5443221 256789999999987 56666554 4688999999999974 66552 2345678999999999854 55
Q ss_pred EecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCCCcCC
Q 016694 270 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 336 (384)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~ 336 (384)
.++.. ....+++|++|++++++- ...++.|+++.+..+.....+|..++.+
T Consensus 195 ~~~~~-------~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 SVPDG-------VFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCCTT-------TTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ccCHH-------HHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHHhCCCcccCccccc
Confidence 44322 112378888888887642 2347788888877776666777766543
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=6.5e-13 Score=120.35 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=114.7
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
..+++|++|++++| .+.+++. ++.+++|++|++++| .+.++++.. .+++|++|+++++. ++.+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKPLA-----------NLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGGGT-----------TCTTCCEEECCSSC-CCCG
T ss_pred hhcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCCcccc-----------cCCCCCEEECCCCc-CCCC
Confidence 46778888888887 6666533 467888888888888 777665411 67788888888776 5554
Q ss_pred ccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694 110 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 189 (384)
Q Consensus 110 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 189 (384)
+. ...+++|++|++++|. ++.++ ..+.+++|+.|+++++ .
T Consensus 106 ~~----l~~l~~L~~L~L~~n~-i~~~~----------------------------------~l~~l~~L~~L~l~~n-~ 145 (291)
T 1h6t_A 106 SS----LKDLKKLKSLSLEHNG-ISDIN----------------------------------GLVHLPQLESLYLGNN-K 145 (291)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCCG----------------------------------GGGGCTTCCEEECCSS-C
T ss_pred hh----hccCCCCCEEECCCCc-CCCCh----------------------------------hhcCCCCCCEEEccCC-c
Confidence 42 5667788888887762 33111 1125777888888776 4
Q ss_pred cccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694 190 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 190 l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
+..+ +....+++|+.|++++| .++.+++ +..+++|+.|+++++ .++++ + .+..+++|+.|+++++.
T Consensus 146 l~~~-----~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l--~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 146 ITDI-----TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDL--R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCC-----GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBC--G-GGTTCTTCSEEEEEEEE
T ss_pred CCcc-----hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCC--h-hhccCCCCCEEECcCCc
Confidence 4443 12366788888888876 4555544 677888888888886 46665 2 25678888888888754
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=125.53 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=149.4
Q ss_pred CCccEEEeecCCCCcccCchhH--HhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 33 NNLRHLVVDDCTNMLSAIPANL--IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
..++.+.+.++ .+.......+ ...+++|++|++++| .+.+..+..... . .+++|++|+++++..-...+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~---~----~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLE---A----TGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSS---C----CCBCCSSCEEESCCCSSTTS
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC-Eeccchhhhhhh---c----cCCCCCEEEeecccccchhh
Confidence 35788888887 4332211111 124578999999999 776555443200 1 68899999999887332222
Q ss_pred cC-cccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccc
Q 016694 111 NF-TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 189 (384)
Q Consensus 111 ~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 189 (384)
.. ......+++|++|++++|. ++..+. ..++.+++|++|+++++.-
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~--------------------------------~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAH-SPAFSC--------------------------------EQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCS-SCCCCT--------------------------------TSCCCCTTCCEEECCSCTT
T ss_pred hhHHHHhhhccCCCEEEeeCCC-cchhhH--------------------------------HHhccCCCCCEEECCCCCC
Confidence 10 0123468899999999874 232210 1123689999999999843
Q ss_pred ccc--ccccccccccccccccEEeeccCcccccccCC----cccCCCcCEEEeecCCCCeeeccccc--ccccCcccEEe
Q 016694 190 VQH--LWKENDESNKAFANLIRLKISECSKLQKLVTP----SWHLENLATLEVSKCHGLINVLTLST--SESLVNLGRMK 261 (384)
Q Consensus 190 l~~--l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~l~~L~~L~ 261 (384)
... +.... ....+++|++|++++| .++.++.. +..+++|++|+++++. ++...+... ...+++|++|+
T Consensus 182 ~~~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~ 257 (310)
T 4glp_A 182 LGERGLMAAL--CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLN 257 (310)
T ss_dssp CHHHHHHTTS--CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEE
T ss_pred ccchhhhHHH--hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEE
Confidence 221 11110 1246889999999997 45555432 3577999999999975 555422222 12347999999
Q ss_pred ecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 016694 262 IADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 324 (384)
Q Consensus 262 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~ 324 (384)
++++ .++.++.. .+++|++|+++++ +++.++. ...+++|++|++++++
T Consensus 258 Ls~N-~l~~lp~~----------~~~~L~~L~Ls~N-~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 258 LSFA-GLEQVPKG----------LPAKLRVLDLSSN-RLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSS-CCCSCCSC----------CCSCCSCEECCSC-CCCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCC-CCCchhhh----------hcCCCCEEECCCC-cCCCCch---hhhCCCccEEECcCCC
Confidence 9985 46655432 1489999999885 6776644 5678999999999875
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=5.3e-12 Score=111.70 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=52.8
Q ss_pred CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694 7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 86 (384)
.++++++++ .+..+ |..+. +++++|++++| ++..+++.. ++++++|++|++++| .+..+++....
T Consensus 16 ~~~l~~~~~-~l~~~----p~~~~--~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~----- 80 (251)
T 3m19_A 16 KKEVDCQGK-SLDSV----PSGIP--ADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDYN-QLQTLSAGVFD----- 80 (251)
T ss_dssp GTEEECTTC-CCSSC----CSCCC--TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTS-CCCCCCTTTTT-----
T ss_pred CeEEecCCC-Ccccc----CCCCC--CCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCCC-cCCccCHhHhc-----
Confidence 455666655 44444 44332 46666666666 455554332 346666666666666 55555443321
Q ss_pred ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++
T Consensus 81 ----~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 81 ----DLTELGTLGLANNQ-LASLPL--GVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----TCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECCSS
T ss_pred ----cCCcCCEEECCCCc-ccccCh--hHhcccCCCCEEEcCCC
Confidence 45566666666554 443332 12234455555555543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.2e-12 Score=128.33 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCccee
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 75 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 75 (384)
.+.+|+.|++++| .+..++. ++.+++|++|++++| .+..+
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~ 80 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI 80 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCC
T ss_pred cCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCC
Confidence 3444555555444 3333321 234455555555554 44443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=5.1e-12 Score=114.44 Aligned_cols=166 Identities=18% Similarity=0.299 Sum_probs=90.3
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+++|++|+++++ .+..+ + .+..+++|++|++++| ++++.++ +.++++|++|++++| .+..++...
T Consensus 45 l~~L~~L~l~~~-~i~~~----~-~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~l~---- 109 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV----Q-GIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDLSSLK---- 109 (291)
T ss_dssp HHTCCEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCGGGGT----
T ss_pred cCcccEEEccCC-CcccC----h-hHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCC-cCCCChhhc----
Confidence 355666666666 44443 2 2456666666666666 5555543 356666666666666 555543211
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
.+++|++|+++++. ++.++ ....+++|+.|++++|. ++.+
T Consensus 110 -------~l~~L~~L~L~~n~-i~~~~----~l~~l~~L~~L~l~~n~-l~~~--------------------------- 149 (291)
T 1h6t_A 110 -------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNNK-ITDI--------------------------- 149 (291)
T ss_dssp -------TCTTCCEEECTTSC-CCCCG----GGGGCTTCCEEECCSSC-CCCC---------------------------
T ss_pred -------cCCCCCEEECCCCc-CCCCh----hhcCCCCCCEEEccCCc-CCcc---------------------------
Confidence 55666666666664 44432 23455666666666542 2211
Q ss_pred CCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecC
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 239 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c 239 (384)
...+.+++|+.|+++++ .+..+.. ...+++|+.|+++++ .++.++ .+..+++|+.|+++++
T Consensus 150 -------~~l~~l~~L~~L~L~~N-~l~~~~~-----l~~l~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 150 -------TVLSRLTKLDTLSLEDN-QISDIVP-----LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -------GGGGGCTTCSEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEEE
T ss_pred -------hhhccCCCCCEEEccCC-ccccchh-----hcCCCccCEEECCCC-cCCCCh-hhccCCCCCEEECcCC
Confidence 01124666666666665 3333211 245666666666665 345553 3556666666666665
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=4.4e-14 Score=133.33 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCCCCCCCCccEEEeecCCCCcccCchhH---HhcCCCCCEEEEecccCcceeccc---cc--ccccccccCCcccccce
Q 016694 26 ALPVSFFNNLRHLVVDDCTNMLSAIPANL---IRCLNNLRWLEVRNCDSLEEVLHL---EE--LNADKEHIGPLFPKLFE 97 (384)
Q Consensus 26 p~~i~~l~~L~~L~l~~c~~l~~~~~~~~---~~~l~~L~~L~l~~~~~l~~~~~~---~~--~~~~~~~~~~~~~~L~~ 97 (384)
+..+..+++|++|++++| .++...+..+ +.++++|++|++++| .+..+.+. .. ....+. .+++|++
T Consensus 25 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~----~~~~L~~ 98 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALL----KCPKLHT 98 (386)
T ss_dssp SHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHT----TCTTCCE
T ss_pred HHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHh----hCCcccE
Confidence 334456677777777776 4554333221 336777777777776 33322111 00 000011 4567777
Q ss_pred eccCccccccc-----cccCcccccCCCCceeEeeccCC
Q 016694 98 LTLMDLPKLKR-----FCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 98 L~l~~~~~l~~-----~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
|+++++. ++. ++. .+..+++|++|++++|.
T Consensus 99 L~Ls~n~-l~~~~~~~l~~---~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 99 VRLSDNA-FGPTAQEPLID---FLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp EECCSCC-CCTTTHHHHHH---HHHHCTTCCEEECCSSC
T ss_pred EECCCCc-CCHHHHHHHHH---HHHhCCCCCEEECcCCC
Confidence 7777765 322 322 34567777888877764
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=6.8e-12 Score=106.76 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=102.6
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccc-
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR- 108 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 108 (384)
..+++|++|++++| .+++++. +..+++|++|++++| .+..++... .+++|++|+++++. ++.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~l~~n-~~~~~~~l~-----------~l~~L~~L~l~~n~-l~~~ 103 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTG---IEYAHNIKDLTINNI-HATNYNPIS-----------GLSNLERLRIMGKD-VTSD 103 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTT---GGGCTTCSEEEEESC-CCSCCGGGT-----------TCTTCCEEEEECTT-CBGG
T ss_pred hhcCCccEEeccCC-CccChHH---HhcCCCCCEEEccCC-CCCcchhhh-----------cCCCCCEEEeECCc-cCcc
Confidence 46778888888887 6666542 468888888888888 666553222 67888888888876 433
Q ss_pred cccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccc
Q 016694 109 FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 188 (384)
Q Consensus 109 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 188 (384)
.+. ....+++|++|++++|. ++.. .+..++.+++|+.|+++++.
T Consensus 104 ~~~---~l~~l~~L~~L~Ls~n~-i~~~--------------------------------~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 104 KIP---NLSGLTSLTLLDISHSA-HDDS--------------------------------ILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp GSC---CCTTCTTCCEEECCSSB-CBGG--------------------------------GHHHHTTCSSCCEEECCSCT
T ss_pred cCh---hhcCCCCCCEEEecCCc-cCcH--------------------------------hHHHHhhCCCCCEEEccCCC
Confidence 333 45678888888888863 2211 00111257788888888875
Q ss_pred ccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 189 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 189 ~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
.+..++ ....+++|++|++++| .++.++ .+..+++|+.|++++++
T Consensus 148 ~i~~~~-----~l~~l~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 148 AITDIM-----PLKTLPELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp BCCCCG-----GGGGCSSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CccccH-----hhcCCCCCCEEECCCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence 455542 2467888888888886 456664 67788889999888764
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.33 E-value=1.8e-13 Score=129.18 Aligned_cols=249 Identities=14% Similarity=0.064 Sum_probs=142.2
Q ss_pred CCCCCceEecCCCcCccee-cccCCCCCCCCCCccEEEeecC--CCCcccCchhH------HhcCCCCCEEEEecccCcc
Q 016694 3 GFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANL------IRCLNNLRWLEVRNCDSLE 73 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i-~~~~p~~i~~l~~L~~L~l~~c--~~l~~~~~~~~------~~~l~~L~~L~l~~~~~l~ 73 (384)
.+++|++|+++++ .+... ....+..+..+++|++|++++| .++++..|..+ +..+++|++|++++| .+.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4688999999999 45431 1001234678999999999998 34444434433 358899999999999 665
Q ss_pred eecccccccccccccCCcccccceeccCcccccccccc--CcccccCC---------CCceeEeeccCCCcccccCCCee
Q 016694 74 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN--FTENIIEM---------PELRYLAIENCPDMETFISNSVV 142 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~---------~~L~~L~l~~c~~l~~~~~~~L~ 142 (384)
...... ....+. .+++|++|++++|. ++.... +......+ ++|++|++++|. ++..
T Consensus 108 ~~~~~~-l~~~l~----~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~------ 174 (386)
T 2ca6_A 108 PTAQEP-LIDFLS----KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG------ 174 (386)
T ss_dssp TTTHHH-HHHHHH----HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG------
T ss_pred HHHHHH-HHHHHH----hCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH------
Confidence 410000 000112 67899999999987 332211 00122233 899999999874 3211
Q ss_pred EEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccc-cc-cccccccccEEeeccCccc--
Q 016694 143 HVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN-DE-SNKAFANLIRLKISECSKL-- 218 (384)
Q Consensus 143 ~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~-~~~~~~~L~~L~l~~~~~l-- 218 (384)
++..+...++.+++|++|+++++ .+....... .+ ....+++|+.|++++|..-
T Consensus 175 ----------------------~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 175 ----------------------SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp ----------------------GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred ----------------------HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 11111111125667777777776 333110000 01 1356677888888776531
Q ss_pred --ccccCCcccCCCcCEEEeecCCCCeeecc---cccc--cccCcccEEeecccccccE-----ecccccCccccceeee
Q 016694 219 --QKLVTPSWHLENLATLEVSKCHGLINVLT---LSTS--ESLVNLGRMKIADCKMIEQ-----IIQLQVGEEAKGCVVF 286 (384)
Q Consensus 219 --~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~--~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~~~~~ 286 (384)
..+|..+..+++|++|++++|. ++.... +..+ ..+++|+.|++++|. +.. ++.. ....+
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~-------l~~~l 302 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTV-------IDEKM 302 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHH-------HHHHC
T ss_pred HHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHH-------HHhcC
Confidence 4455566677788888888775 443211 1122 236778888887754 332 2111 00125
Q ss_pred cccceeecccCC
Q 016694 287 EELGYLGLDCLP 298 (384)
Q Consensus 287 ~~L~~L~l~~c~ 298 (384)
++|++|++++++
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 788888887753
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=1.1e-11 Score=123.27 Aligned_cols=168 Identities=18% Similarity=0.301 Sum_probs=116.9
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|+.|+++++ .+..+ + .+..+++|+.|+|++| .+.++++ +..+++|++|++++| .+..++...
T Consensus 41 ~L~~L~~L~l~~n-~i~~l----~-~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l~~l~--- 106 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV----Q-GIQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDLSSLK--- 106 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC----T-TGGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCTTST---
T ss_pred cCCCCCEEECcCC-CCCCC----h-HHccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCChhhc---
Confidence 3578888898888 56654 3 4778899999999988 6777755 468899999999998 777654222
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccc
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 162 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~ 162 (384)
.+++|++|+++++. +..++ .+..+++|+.|++++|. ++.+
T Consensus 107 --------~l~~L~~L~Ls~N~-l~~l~----~l~~l~~L~~L~Ls~N~-l~~l-------------------------- 146 (605)
T 1m9s_A 107 --------DLKKLKSLSLEHNG-ISDIN----GLVHLPQLESLYLGNNK-ITDI-------------------------- 146 (605)
T ss_dssp --------TCTTCCEEECTTSC-CCCCG----GGGGCTTCSEEECCSSC-CCCC--------------------------
T ss_pred --------cCCCCCEEEecCCC-CCCCc----cccCCCccCEEECCCCc-cCCc--------------------------
Confidence 67888899888876 55443 35567788888887762 2211
Q ss_pred cCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 163 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 163 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
..++.+++|+.|+|+++ .+..+.. ...+++|+.|++++| .+..+ +.+..+++|+.|++++|+
T Consensus 147 --------~~l~~l~~L~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~Ls~N-~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 --------TVLSRLTKLDTLSLEDN-QISDIVP-----LAGLTKLQNLYLSKN-HISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp --------GGGGSCTTCSEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCBC-GGGTTCTTCSEEECCSEE
T ss_pred --------hhhcccCCCCEEECcCC-cCCCchh-----hccCCCCCEEECcCC-CCCCC-hHHccCCCCCEEEccCCc
Confidence 11226778888888877 4443311 356778888888876 45555 346777888888888764
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=2.4e-11 Score=107.48 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=81.9
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++++.|+++++ .+..+ .+..+..+++|++|++++| .++..++. .+.++++|++|++++| .+..+++....
T Consensus 35 ~~l~~L~L~~n-~l~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~--- 104 (251)
T 3m19_A 35 ADTEKLDLQST-GLATL---SDATFRGLTKLTWLNLDYN-QLQTLSAG-VFDDLTELGTLGLANN-QLASLPLGVFD--- 104 (251)
T ss_dssp TTCCEEECTTS-CCCCC---CTTTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTT---
T ss_pred CCCCEEEccCC-CcCcc---CHhHhcCcccCCEEECCCC-cCCccCHh-HhccCCcCCEEECCCC-cccccChhHhc---
Confidence 57999999999 56554 1446788999999999998 77777554 3578999999999999 88877765532
Q ss_pred ccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++
T Consensus 105 ------~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 105 ------HLTQLDKLYLGGNQ-LKSLPS--GVFDRLTKLKELRLNTN 141 (251)
T ss_dssp ------TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS
T ss_pred ------ccCCCCEEEcCCCc-CCCcCh--hHhccCCcccEEECcCC
Confidence 78899999999886 666654 12345677777777765
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1.2e-12 Score=122.49 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=47.0
Q ss_pred CCCCCccEEEeecCCCCcccCch---hHHhcCC-CCCEEEEecccCcceecccccccccccccCCcccccceeccCcccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK 105 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 105 (384)
...++|++|++++| .+++.++. ..+.+++ +|++|++++| .+.......... .+. ..+++|++|+++++.
T Consensus 19 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~-~l~---~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 19 SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQ-ILA---AIPANVTSLNLSGNF- 91 (362)
T ss_dssp TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHH-HHH---TSCTTCCEEECCSSC-
T ss_pred hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHH-HHh---ccCCCccEEECcCCc-
Confidence 33455777777776 45655442 2234556 6777777777 555443222110 000 012667777777665
Q ss_pred cccccc--CcccccCC-CCceeEeeccCC
Q 016694 106 LKRFCN--FTENIIEM-PELRYLAIENCP 131 (384)
Q Consensus 106 l~~~~~--~~~~~~~~-~~L~~L~l~~c~ 131 (384)
++.... +......+ ++|++|++++|.
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 332221 00012223 567777776654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=6.2e-11 Score=116.73 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=89.7
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 85 (384)
+|++|+++++ .+..+ |..+ +++|++|++++| +++.++ +.+++|++|++++| .+..++. .
T Consensus 60 ~L~~L~Ls~n-~L~~l----p~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~ip~-l------ 118 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL----PDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTLPE-L------ 118 (571)
T ss_dssp TCSEEECCSS-CCSCC----CSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-C------
T ss_pred CccEEEeCCC-CCCcc----CHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCcch-h------
Confidence 5566666665 34443 4433 356666666665 445443 23466666666666 5555433 1
Q ss_pred cccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCC
Q 016694 86 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 165 (384)
Q Consensus 86 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~ 165 (384)
. .+|++|+++++. ++.+|. .+++|+.|+++++ .++.+|
T Consensus 119 -----~-~~L~~L~Ls~N~-l~~lp~------~l~~L~~L~Ls~N-~l~~lp---------------------------- 156 (571)
T 3cvr_A 119 -----P-ASLKHLDVDNNQ-LTMLPE------LPALLEYINADNN-QLTMLP---------------------------- 156 (571)
T ss_dssp -----C-TTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCCC----------------------------
T ss_pred -----h-cCCCEEECCCCc-CCCCCC------cCccccEEeCCCC-ccCcCC----------------------------
Confidence 0 156666666554 433332 3455555555553 222111
Q ss_pred cccccCCccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCc-------CEEEeec
Q 016694 166 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL-------ATLEVSK 238 (384)
Q Consensus 166 l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L-------~~L~l~~ 238 (384)
. .+++|+.|+++++ .+..++. + . ++|+.|+++++ .++.+|. +.. +| +.|++++
T Consensus 157 -----~---~l~~L~~L~Ls~N-~L~~lp~--l---~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 157 -----E---LPTSLEVLSVRNN-QLTFLPE--L---P--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp -----C---CCTTCCEEECCSS-CCSCCCC--C---C--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS
T ss_pred -----C---cCCCcCEEECCCC-CCCCcch--h---h--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC
Confidence 1 2456666776665 3443322 1 1 56777777664 4555655 332 45 6677766
Q ss_pred CCCCeeecccccccccCcccEEeecccc
Q 016694 239 CHGLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 239 c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
+ .++.+ +..+..+++|+.|++++++
T Consensus 217 N-~l~~l--p~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 217 N-RITHI--PENILSLDPTCTIILEDNP 241 (571)
T ss_dssp S-CCCCC--CGGGGGSCTTEEEECCSSS
T ss_pred C-cceec--CHHHhcCCCCCEEEeeCCc
Confidence 5 35544 3333446677777776643
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=3.1e-11 Score=102.62 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=112.7
Q ss_pred hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccc
Q 016694 56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET 135 (384)
Q Consensus 56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 135 (384)
+.+++|++|++++| .+..+++.. .+++|++|+++++ .++.++ .+..+++|++|+++++. ++.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~-----------~l~~L~~L~l~~n-~~~~~~----~l~~l~~L~~L~l~~n~-l~~ 102 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIE-----------YAHNIKDLTINNI-HATNYN----PISGLSNLERLRIMGKD-VTS 102 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGG-----------GCTTCSEEEEESC-CCSCCG----GGTTCTTCCEEEEECTT-CBG
T ss_pred hhcCCccEEeccCC-CccChHHHh-----------cCCCCCEEEccCC-CCCcch----hhhcCCCCCEEEeECCc-cCc
Confidence 57799999999999 888776322 7889999999998 355554 35678999999999863 332
Q ss_pred ccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccccccccccccccccEEeeccC
Q 016694 136 FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 215 (384)
Q Consensus 136 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~ 215 (384)
. .+..++.+++|+.|+++++ .+..... .....+++|++|++++|
T Consensus 103 ~--------------------------------~~~~l~~l~~L~~L~Ls~n-~i~~~~~---~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 103 D--------------------------------KIPNLSGLTSLTLLDISHS-AHDDSIL---TKINTLPKVNSIDLSYN 146 (197)
T ss_dssp G--------------------------------GSCCCTTCTTCCEEECCSS-BCBGGGH---HHHTTCSSCCEEECCSC
T ss_pred c--------------------------------cChhhcCCCCCCEEEecCC-ccCcHhH---HHHhhCCCCCEEEccCC
Confidence 1 0111236899999999987 3443111 11367899999999998
Q ss_pred cccccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694 216 SKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 216 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
..++.++ .+..+++|+.|++++|. ++++. .+..+++|+.|+++++.
T Consensus 147 ~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 147 GAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred CCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 7688885 67889999999999975 66652 45788999999999843
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=1.1e-11 Score=110.40 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
..+++|++|++++| +++.++. ++.+++|++|++++| .+.++++ . . .+++|++|+++++.
T Consensus 38 ~~l~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~L~~N-~i~~~~~-l------~----~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 38 KELSGVQNFNGDNS-NIQSLAG---MQFFTNLKELHLSHN-QISDLSP-L------K----DLTKLEELSVNRNR 96 (263)
T ss_dssp HHHTTCSEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-G------T----TCSSCCEEECCSSC
T ss_pred hhcCcCcEEECcCC-CcccchH---HhhCCCCCEEECCCC-ccCCChh-h------c----cCCCCCEEECCCCc
Confidence 44555555555555 4444431 345555555555555 4544433 1 1 45555555555554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=4e-11 Score=102.79 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=88.9
Q ss_pred CCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694 32 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 111 (384)
Q Consensus 32 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 111 (384)
.++|++|++++| +++.+++. .++.+++|++|++++| .++.+++.... .+++|++|+++++. ++.++.
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNG-VFDELTSLTQLYLGGN-KLQSLPNGVFN---------KLTSLTYLNLSTNQ-LQSLPN 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCcEEEcCCC-ccCcCChh-hhcccccCcEEECCCC-ccCccChhhcC---------CCCCcCEEECCCCc-CCccCH
Confidence 467888888887 66665443 3467788888888887 67766554322 56788888888775 555554
Q ss_pred CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694 112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 191 (384)
Q Consensus 112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 191 (384)
.....+++|++|+++++ .++.++.. .++.+++|+.|+++++ .+.
T Consensus 94 --~~~~~l~~L~~L~L~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~l~~N-~l~ 137 (208)
T 2o6s_A 94 --GVFDKLTQLKELALNTN-QLQSLPDG--------------------------------VFDKLTQLKDLRLYQN-QLK 137 (208)
T ss_dssp --TTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCS
T ss_pred --hHhcCccCCCEEEcCCC-cCcccCHh--------------------------------HhccCCcCCEEECCCC-ccc
Confidence 13456778888888775 33322100 0125666777777665 343
Q ss_pred cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCC
Q 016694 192 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 240 (384)
.+.... ...+++|+.|++++++. ...+++|+.|+++.+.
T Consensus 138 ~~~~~~---~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 138 SVPDGV---FDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp CCCTTT---TTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHHH
T ss_pred eeCHHH---hccCCCccEEEecCCCe-------ecCCCCHHHHHHHHHh
Confidence 332211 24566777777776531 1334556666655543
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=2.3e-12 Score=120.47 Aligned_cols=263 Identities=12% Similarity=0.030 Sum_probs=140.8
Q ss_pred EEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCccc-ccceeccCccccccccccCcccc
Q 016694 38 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENI 116 (384)
Q Consensus 38 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~ 116 (384)
++++.+ ++.+..+ .+....++|++|++++| .+...+.... ...+. .++ +|++|+++++. ++.... ...
T Consensus 3 ~~ls~n-~~~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~l-~~~l~----~~~~~L~~L~Ls~N~-l~~~~~--~~l 71 (362)
T 3goz_A 3 YKLTLH-PGSNPVE-EFTSIPHGVTSLDLSLN-NLYSISTVEL-IQAFA----NTPASVTSLNLSGNS-LGFKNS--DEL 71 (362)
T ss_dssp EECCCC-TTCCHHH-HHHTSCTTCCEEECTTS-CGGGSCHHHH-HHHHH----TCCTTCCEEECCSSC-GGGSCH--HHH
T ss_pred cccccc-cchHHHH-HHHhCCCCceEEEccCC-CCChHHHHHH-HHHHH----hCCCceeEEECcCCC-CCHHHH--HHH
Confidence 456665 5555433 33445566999999999 7776653110 01112 566 89999999986 444321 012
Q ss_pred cC-----CCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCcccc-CCccEEeccccccc
Q 016694 117 IE-----MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAF-PQLRYLELSRLHKV 190 (384)
Q Consensus 117 ~~-----~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~L~~L~l~~~~~l 190 (384)
.. +++|++|++++|. ++..+ ...+......+ ++|++|+++++ .+
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~-l~~~~----------------------------~~~l~~~l~~~~~~L~~L~Ls~N-~l 121 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNF-LSYKS----------------------------SDELVKTLAAIPFTITVLDLGWN-DF 121 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSC----------------------------HHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred HHHHhccCCCccEEECcCCc-CChHH----------------------------HHHHHHHHHhCCCCccEEECcCC-cC
Confidence 22 2889999998874 33221 00000001123 67778887776 34
Q ss_pred cccccccccc-ccc-cccccEEeeccCcccc-----cccCCcccCC-CcCEEEeecCCCCeeecccc---ccccc-Cccc
Q 016694 191 QHLWKENDES-NKA-FANLIRLKISECSKLQ-----KLVTPSWHLE-NLATLEVSKCHGLINVLTLS---TSESL-VNLG 258 (384)
Q Consensus 191 ~~l~~~~~~~-~~~-~~~L~~L~l~~~~~l~-----~l~~~~~~~~-~L~~L~l~~c~~l~~l~~~~---~~~~l-~~L~ 258 (384)
.......+.. ... +++|++|++++|. ++ .++..+..++ +|++|++++|. +++..... .+..+ ++|+
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~ 199 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVT 199 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCC
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCC
Confidence 4332211100 012 3578888887764 33 2223334444 78888888764 44432111 12334 4788
Q ss_pred EEeecccccccEecccccCccccceee-ecccceeecccCCCCceecCC---CcccCCCCccEEEeccCC-------CCC
Q 016694 259 RMKIADCKMIEQIIQLQVGEEAKGCVV-FEELGYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQCP-------TMK 327 (384)
Q Consensus 259 ~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~l~~~---~~~~~~~~L~~L~l~~c~-------~l~ 327 (384)
+|++++|. +...... ........ .++|++|+++++ .+++.... .....+++|++|++++|. .+.
T Consensus 200 ~L~Ls~N~-i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 200 SLDLSANL-LGLKSYA---ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp EEECTTSC-GGGSCHH---HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred EEECCCCC-CChhHHH---HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 88888754 4321000 00001111 357888888775 44443221 113456888888888875 123
Q ss_pred ccCCCCcCCCCCeeeccCCCC
Q 016694 328 IFSQGVVDAPKLNKVKPTEEE 348 (384)
Q Consensus 328 ~lp~~~~~~~~L~~l~i~~~~ 348 (384)
.++..+..+++|+.+++++++
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhccCCceEEEecCCCc
Confidence 344555567788888888873
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=6.5e-11 Score=105.48 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=78.0
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+++|++|+++++ .+..+ + .+..+++|++|++++| +++++++ ++++++|++|++++| .++++++..
T Consensus 39 ~l~~L~~L~l~~n-~i~~l----~-~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l~~~~--- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSL----A-GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNLNGIP--- 104 (263)
T ss_dssp HHTTCSEEECTTS-CCCCC----T-TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCCTTCC---
T ss_pred hcCcCcEEECcCC-Ccccc----h-HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCcCccc---
Confidence 4689999999999 67765 4 5788999999999998 7888765 579999999999999 787765422
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
. ++|++|+++++. ++.++ ....+++|+.|+++++
T Consensus 105 --------~-~~L~~L~L~~N~-l~~~~----~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 105 --------S-ACLSRLFLDNNE-LRDTD----SLIHLKNLEILSIRNN 138 (263)
T ss_dssp --------C-SSCCEEECCSSC-CSBSG----GGTTCTTCCEEECTTS
T ss_pred --------c-CcccEEEccCCc-cCCCh----hhcCcccccEEECCCC
Confidence 3 788999998875 55543 2456777777777765
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=4.3e-10 Score=110.74 Aligned_cols=31 Identities=3% Similarity=0.064 Sum_probs=18.5
Q ss_pred cEEEeccCCCCCccCCCCcCCCCCeeeccCCC
Q 016694 316 EHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 347 (384)
Q Consensus 316 ~~L~l~~c~~l~~lp~~~~~~~~L~~l~i~~~ 347 (384)
++|++++| .++.+|..+..+++|+.+++++|
T Consensus 210 ~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 210 IFFRCREN-RITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp EEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred eEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence 66666555 45556655555666666666665
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.16 E-value=1e-10 Score=96.61 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcce
Q 016694 5 RDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 74 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 74 (384)
++|++|+++++ .+. .+ |..+..+++|++|++++| .++.. ..++.+++|++|++++| .+..
T Consensus 24 ~~L~~L~l~~n-~l~~~~i----~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~ 85 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKI----EGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFG 85 (168)
T ss_dssp TSCSEEECCSC-BCBTTBC----SSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCS
T ss_pred ccCCEEECCCC-CCChhhH----HHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCch
Confidence 44555555555 233 33 444445555555555555 34443 11345555555555555 4443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=4.7e-10 Score=97.07 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=33.2
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccc-cCCcccCCCcCEEEeecCC
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~l~~c~ 240 (384)
.+++|++|+++++ .+..+.... ...+++|+.|+++++ .++.+ |..+..+++|+.|++++++
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDS---FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTS---STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhH---cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 4555555555554 333321111 244566666666664 34444 4456667777777777754
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.5e-10 Score=97.83 Aligned_cols=166 Identities=14% Similarity=0.068 Sum_probs=104.0
Q ss_pred cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694 36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN 115 (384)
Q Consensus 36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 115 (384)
+.++.+++ .++.++.. -.++|++|++++| .+..+++.... .+++|++|+++++. ++.++. ..
T Consensus 10 ~~v~c~~~-~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~--~~ 71 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTG----IPAQTTYLDLETN-SLKSLPNGVFD---------ELTSLTQLYLGGNK-LQSLPN--GV 71 (208)
T ss_dssp TEEECCSS-CCSSCCSC----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCSEEECCSSC-CCCCCT--TT
T ss_pred CEEEecCC-CccCCCCC----CCCCCcEEEcCCC-ccCcCChhhhc---------ccccCcEEECCCCc-cCccCh--hh
Confidence 45555554 45555322 3467888888888 77766554422 67788888888775 555554 13
Q ss_pred ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694 116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 195 (384)
Q Consensus 116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 195 (384)
...+++|++|+++++ .++.++. . .++.+++|+.|+++++ .+..+..
T Consensus 72 ~~~l~~L~~L~Ls~n-~l~~~~~-----------------------------~---~~~~l~~L~~L~L~~N-~l~~~~~ 117 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTN-QLQSLPN-----------------------------G---VFDKLTQLKELALNTN-QLQSLPD 117 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCT-----------------------------T---TTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCcCEEECCCC-cCCccCH-----------------------------h---HhcCccCCCEEEcCCC-cCcccCH
Confidence 356788888888875 2332210 0 1126778888888876 4544332
Q ss_pred cccccccccccccEEeeccCcccccccCC-cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccc
Q 016694 196 ENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 266 (384)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 266 (384)
.. ...+++|++|+++++ .++.++.. +..+++|++|++++++ +...+++|+.|+++.+.
T Consensus 118 ~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 118 GV---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINK 176 (208)
T ss_dssp TT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC---------BCCCTTTTHHHHHHHHH
T ss_pred hH---hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC---------eecCCCCHHHHHHHHHh
Confidence 21 256788888888886 45566554 5678888888888764 12345677777777643
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=5.6e-10 Score=97.20 Aligned_cols=149 Identities=13% Similarity=0.021 Sum_probs=83.7
Q ss_pred ccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcc
Q 016694 35 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 114 (384)
Q Consensus 35 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 114 (384)
-+.++++++ +++.+|.. -.++|++|++++| .+..+++.... .+++|++|+++++. ++.++. .
T Consensus 21 ~~~v~c~~~-~l~~ip~~----~~~~L~~L~Ls~n-~i~~~~~~~~~---------~l~~L~~L~L~~N~-l~~i~~--~ 82 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG----IPTNAQILYLHDN-QITKLEPGVFD---------SLINLKELYLGSNQ-LGALPV--G 82 (229)
T ss_dssp TTEEECTTS-CCSSCCSC----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT--T
T ss_pred CCEeEccCC-CcCccCCC----CCCCCCEEEcCCC-ccCccCHHHhh---------CccCCcEEECCCCC-CCCcCh--h
Confidence 345555544 44555331 2266666666666 55555443322 45666666666665 444443 1
Q ss_pred cccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEeccccccccccc
Q 016694 115 NIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW 194 (384)
Q Consensus 115 ~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 194 (384)
....+++|+.|+++++ .++.++. . .++.+++|+.|+++++ .+..++
T Consensus 83 ~~~~l~~L~~L~Ls~N-~l~~l~~-----------------------------~---~~~~l~~L~~L~Ls~N-~l~~lp 128 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTN-QLTVLPS-----------------------------A---VFDRLVHLKELFMCCN-KLTELP 128 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCT-----------------------------T---TTTTCTTCCEEECCSS-CCCSCC
T ss_pred hcccCCCcCEEECCCC-cCCccCh-----------------------------h---HhCcchhhCeEeccCC-cccccC
Confidence 2345666777776664 2332210 0 0125667777777766 454443
Q ss_pred ccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCC
Q 016694 195 KENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 240 (384)
Q Consensus 195 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 240 (384)
.. ...+++|+.|+++++ .++.++. .+..+++|+.|++.+++
T Consensus 129 ~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 129 RG----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TT----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cc----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 22 356777888888775 4666654 35677888888888765
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=3e-10 Score=105.98 Aligned_cols=84 Identities=18% Similarity=0.060 Sum_probs=40.6
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+++.|++++| +++.+++..+..++++|++|++++| .+..+++.... .+++|++|+++++. ++.++.
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~- 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV---------PVPNLRYLDLSSNH-LHTLDE- 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CCEECT-
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhcc---------CCCCCCEEECCCCc-CCcCCH-
Confidence 34555666555 4555433321115555666666555 55555443321 45555555555554 444432
Q ss_pred cccccCCCCceeEeeccC
Q 016694 113 TENIIEMPELRYLAIENC 130 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c 130 (384)
.....+++|+.|+++++
T Consensus 106 -~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 106 -FLFSDLQALEVLLLYNN 122 (361)
T ss_dssp -TTTTTCTTCCEEECCSS
T ss_pred -HHhCCCcCCCEEECCCC
Confidence 12334555555555553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=5e-10 Score=97.52 Aligned_cols=14 Identities=14% Similarity=-0.097 Sum_probs=11.2
Q ss_pred ccCCccEEeccccc
Q 016694 175 AFPQLRYLELSRLH 188 (384)
Q Consensus 175 ~~~~L~~L~l~~~~ 188 (384)
.+++|+.|++.+++
T Consensus 157 ~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 157 RLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEEeeCCC
Confidence 67889999988763
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=9.1e-11 Score=94.90 Aligned_cols=106 Identities=24% Similarity=0.282 Sum_probs=62.1
Q ss_pred CCCCceEecCCCcCcc--eecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 4 FRDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~--~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
.++|++|+++++ .+. .+ |..+..+++|++|++++| .+++. ..++++++|++|++++| .+.+..+....
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKL----EGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBC----CSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred CccCeEEEccCC-cCChhHH----HHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence 456777777777 344 33 555567777777777776 55555 22456777777777777 55552222211
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. ......+++|++|++++|
T Consensus 86 ---------~l~~L~~L~ls~N~-i~~~~~-~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 86 ---------KCPNLTHLNLSGNK-IKDLST-IEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp ---------HCTTCCEEECTTSC-CCSHHH-HGGGGGCTTCCEEECTTC
T ss_pred ---------hCCCCCEEECCCCc-CCChHH-HHHHhhCCCCCEEeCcCC
Confidence 36667777777665 444331 113455666666666664
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=1.3e-09 Score=94.20 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=33.4
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCC
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 240 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~ 240 (384)
.+++|+.|+++++ .+..+.... ...+++|+.|+++++ .++.++. .+..+++|+.|++++++
T Consensus 102 ~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 102 GLFSLQLLLLNAN-KINCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-CCCEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 4555666666555 333332211 245566667777664 3444443 35566777777777754
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.08 E-value=1.1e-09 Score=94.75 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=100.2
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++.+++ .+..+ |..+ .++|+.|++++| +++.+++.. +..+++|++|++++| .+..+.+....
T Consensus 14 ~~v~c~~~-~l~~i----P~~l--~~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~N-~i~~~~~~~~~------ 77 (220)
T 2v9t_B 14 NIVDCRGK-GLTEI----PTNL--PETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSNN-QISELAPDAFQ------ 77 (220)
T ss_dssp TEEECTTS-CCSSC----CSSC--CTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred CEEEcCCC-CcCcC----CCcc--CcCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCCC-cCCCcCHHHhh------
Confidence 45566665 56655 6544 368999999988 677775533 568899999999998 78877555432
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ 167 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 167 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++ .++.++.
T Consensus 78 ---~l~~L~~L~Ls~N~-l~~l~~--~~f~~l~~L~~L~L~~N-~l~~~~~----------------------------- 121 (220)
T 2v9t_B 78 ---GLRSLNSLVLYGNK-ITELPK--SLFEGLFSLQLLLLNAN-KINCLRV----------------------------- 121 (220)
T ss_dssp ---TCSSCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS-CCCCCCT-----------------------------
T ss_pred ---CCcCCCEEECCCCc-CCccCH--hHccCCCCCCEEECCCC-CCCEeCH-----------------------------
Confidence 67889999998876 666665 23456888888888885 3332210
Q ss_pred cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694 168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 216 (384)
Q Consensus 168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~ 216 (384)
..++.+++|+.|+++++ .+..+.... ...+++|+.|++++++
T Consensus 122 ---~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 122 ---DAFQDLHNLNLLSLYDN-KLQTIAKGT---FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ---TTTTTCTTCCEEECCSS-CCSCCCTTT---TTTCTTCCEEECCSSC
T ss_pred ---HHcCCCCCCCEEECCCC-cCCEECHHH---HhCCCCCCEEEeCCCC
Confidence 11225778888888877 455443321 2457778888887754
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.03 E-value=1.3e-09 Score=101.72 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=107.9
Q ss_pred CCCceEecCCCcCcceecccCCCCCC-CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
+.+++|+++++ .+..+. +..+. .+++|++|++++| +++.+++.. +.++++|++|++++| .+..+++....
T Consensus 39 ~~l~~L~Ls~N-~l~~l~---~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~-- 109 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLR---AEWTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN-HLHTLDEFLFS-- 109 (361)
T ss_dssp TTCSEEECCSS-CCCEEC---TTSSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEECTTTTT--
T ss_pred CCCCEEECCCC-CCCccC---hhhhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-cCCcCCHHHhC--
Confidence 46899999999 677761 22344 8999999999998 788876543 569999999999999 88888765533
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCcccccccccccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 163 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 163 (384)
.+++|++|+++++. ++.++. .....+++|+.|+++++ .++.+|.
T Consensus 110 -------~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~L~~N-~l~~l~~------------------------- 153 (361)
T 2xot_A 110 -------DLQALEVLLLYNNH-IVVVDR--NAFEDMAQLQKLYLSQN-QISRFPV------------------------- 153 (361)
T ss_dssp -------TCTTCCEEECCSSC-CCEECT--TTTTTCTTCCEEECCSS-CCCSCCG-------------------------
T ss_pred -------CCcCCCEEECCCCc-ccEECH--HHhCCcccCCEEECCCC-cCCeeCH-------------------------
Confidence 78999999999987 555543 24567889999999885 3443321
Q ss_pred CCcccccCCccccCCccEEeccccccccccccccccccccccc--ccEEeeccCc
Q 016694 164 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN--LIRLKISECS 216 (384)
Q Consensus 164 ~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~--L~~L~l~~~~ 216 (384)
.++...+.+++|+.|+++++ .+..++... ...++. ++.|++.+++
T Consensus 154 ----~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~---~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 154 ----ELIKDGNKLPKLMLLDLSSN-KLKKLPLTD---LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----GGTC----CTTCCEEECCSS-CCCCCCHHH---HHHSCHHHHTTEECCSSC
T ss_pred ----HHhcCcccCCcCCEEECCCC-CCCccCHHH---hhhccHhhcceEEecCCC
Confidence 01111125778888888876 455443221 133343 3667776643
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.98 E-value=4e-09 Score=91.17 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=108.7
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++++++ .++.+ |..+ ...+++|++++| +++.+++...++.+++|++|++++| .++.+++....
T Consensus 14 ~~l~~s~n-~l~~i----P~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~------ 78 (220)
T 2v70_A 14 TTVDCSNQ-KLNKI----PEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE------ 78 (220)
T ss_dssp TEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT------
T ss_pred CEeEeCCC-CcccC----ccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC------
Confidence 57888887 56666 6554 457899999998 7888766555679999999999999 88888765433
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcc
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ 167 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~ 167 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++. ++.++
T Consensus 79 ---~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~------------------------------ 121 (220)
T 2v70_A 79 ---GASGVNEILLTSNR-LENVQH--KMFKGLESLKTLMLRSNR-ITCVG------------------------------ 121 (220)
T ss_dssp ---TCTTCCEEECCSSC-CCCCCG--GGGTTCSSCCEEECTTSC-CCCBC------------------------------
T ss_pred ---CCCCCCEEECCCCc-cCccCH--hHhcCCcCCCEEECCCCc-CCeEC------------------------------
Confidence 78899999999887 566654 245678999999999863 33221
Q ss_pred cccCCccccCCccEEecccccccccccccccccccccccccEEeeccCc
Q 016694 168 PLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 216 (384)
Q Consensus 168 ~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~ 216 (384)
...++.+++|+.|+++++ .+..+.... ...+++|+.|++++++
T Consensus 122 --~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 122 --NDSFIGLSSVRLLSLYDN-QITTVAPGA---FDTLHSLSTLNLLANP 164 (220)
T ss_dssp --TTSSTTCTTCSEEECTTS-CCCCBCTTT---TTTCTTCCEEECCSCC
T ss_pred --HhHcCCCccCCEEECCCC-cCCEECHHH---hcCCCCCCEEEecCcC
Confidence 011226788888988887 555542221 3567888899888864
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=2.5e-12 Score=127.02 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=122.6
Q ss_pred CCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCc------------ceecccccccccccccCCcccccce
Q 016694 30 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL------------EEVLHLEELNADKEHIGPLFPKLFE 97 (384)
Q Consensus 30 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l------------~~~~~~~~~~~~~~~~~~~~~~L~~ 97 (384)
..+++|+.|+++++ +++.+|.. +++|++|++|+++++..+ ...++.. +. .+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-----l~----~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-----LQ----YFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-----HH----HHHHHHH
T ss_pred ccCccceeccCChh-hHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-----HH----HHHhccc
Confidence 45778888888887 66666433 678888888887665211 1111111 11 4566776
Q ss_pred eccCcccccccccc---CcccccC--CCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCC
Q 016694 98 LTLMDLPKLKRFCN---FTENIIE--MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDE 172 (384)
Q Consensus 98 L~l~~~~~l~~~~~---~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~ 172 (384)
|+......+..++. ....+.. ...|+.|+++++ .++.+ ..
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~l---------------------------------p~- 458 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVL---------------------------------CH- 458 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSC---------------------------------CC-
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCC-CCCCC---------------------------------cC-
Confidence 66222221222211 0000000 123666666664 23322 11
Q ss_pred ccccCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeeccccccc
Q 016694 173 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 252 (384)
Q Consensus 173 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 252 (384)
++.+++|+.|+++++ .+..++.. ...+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+..+..+.
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALPPA----LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred ccccccCcEeecCcc-cccccchh----hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 337889999999987 56555432 467899999999986 577786 7888999999999986 466653245567
Q ss_pred ccCcccEEeecccccccEecccccCccccceeeecccceeec
Q 016694 253 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGL 294 (384)
Q Consensus 253 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 294 (384)
.+++|+.|+++++. +...+.. .......+|+|+.|++
T Consensus 531 ~l~~L~~L~L~~N~-l~~~~~~----~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 531 SCPRLVLLNLQGNS-LCQEEGI----QERLAEMLPSVSSILT 567 (567)
T ss_dssp GCTTCCEEECTTSG-GGGSSSC----TTHHHHHCTTCSEEEC
T ss_pred cCCCCCEEEecCCc-CCCCccH----HHHHHHHCcccCccCC
Confidence 89999999999854 5444321 0112223788888864
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=8.3e-10 Score=91.93 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred CCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 110 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 110 (384)
.+.+|+.|++++| +++.++. +....++|++|++++| .+.++. .. . .+++|++|+++++. ++.++
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~--~~~~~~~L~~L~Ls~N-~l~~~~-~l------~----~l~~L~~L~Ls~N~-l~~~~ 80 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIEN--LGATLDQFDAIDFSDN-EIRKLD-GF------P----LLRRLKTLLVNNNR-ICRIG 80 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCC--GGGGTTCCSEEECCSS-CCCEEC-CC------C----CCSSCCEEECCSSC-CCEEC
T ss_pred CcCCceEEEeeCC-CCchhHH--hhhcCCCCCEEECCCC-CCCccc-cc------c----cCCCCCEEECCCCc-ccccC
Confidence 3445555555555 4444322 1222235555555555 454441 11 1 44555555555554 44443
Q ss_pred cCcccccCCCCceeEeeccC
Q 016694 111 NFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 111 ~~~~~~~~~~~L~~L~l~~c 130 (384)
. .....+++|++|+++++
T Consensus 81 ~--~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 81 E--GLDQALPDLTELILTNN 98 (176)
T ss_dssp S--CHHHHCTTCCEEECCSC
T ss_pred c--chhhcCCCCCEEECCCC
Confidence 2 01134555555555554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=2.1e-09 Score=88.69 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=37.8
Q ss_pred cCCccEEecccccccc--cccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccc
Q 016694 176 FPQLRYLELSRLHKVQ--HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 253 (384)
Q Consensus 176 ~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 253 (384)
.++|+.|+++++. +. .++.. ...+++|+.|++++|. ++.+ ..+..+++|++|+++++. +... .+..+..
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~----~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGL----TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGG-LDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSC----CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSC-CCHHHHH
T ss_pred cccCCEEECCCCC-CChhhHHHH----HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchH-HHHHHhh
Confidence 4556666666552 32 22111 1445555556555543 4444 444555555555555543 3321 1223334
Q ss_pred cCcccEEeeccc
Q 016694 254 LVNLGRMKIADC 265 (384)
Q Consensus 254 l~~L~~L~l~~c 265 (384)
+++|++|++++|
T Consensus 94 l~~L~~L~Ls~N 105 (168)
T 2ell_A 94 LPNLTHLNLSGN 105 (168)
T ss_dssp CTTCCEEECBSS
T ss_pred CCCCCEEeccCC
Confidence 555555555553
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=9.1e-09 Score=86.88 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=72.3
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++++++ .++.+ |..+. .+|++|++++| +++.+++...++.+++|++|++++| .+..+.+....
T Consensus 11 ~~l~~s~~-~l~~i----p~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~------ 75 (192)
T 1w8a_A 11 TTVDCTGR-GLKEI----PRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE------ 75 (192)
T ss_dssp TEEECTTS-CCSSC----CSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT------
T ss_pred CEEEcCCC-CcCcC----ccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcC------
Confidence 67788877 56666 65543 48889999888 6777766444678889999999888 77777554432
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. .....+++|++|+++++
T Consensus 76 ---~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 76 ---GASHIQELQLGENK-IKEISN--KMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp ---TCTTCCEEECCSCC-CCEECS--SSSTTCTTCCEEECCSS
T ss_pred ---CcccCCEEECCCCc-CCccCH--HHhcCCCCCCEEECCCC
Confidence 67788888888876 555554 23456777777777775
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=2.9e-08 Score=91.22 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccc-eeecccCCCCceecCC
Q 016694 228 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCLG 306 (384)
Q Consensus 228 ~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~l~~~ 306 (384)
+++|+.+++.++ +++.++. ..+.++++|+++++.+. ++.+... ....+++|+ .+++.+ +++.+...
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence 677788887765 3666633 33566777888887762 5555432 222366677 777765 66666554
Q ss_pred CcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeec
Q 016694 307 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVK 343 (384)
Q Consensus 307 ~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~ 343 (384)
.+.+|++|+++++.+. .++.++.. +.++++|+.++
T Consensus 292 -aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred -hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 3667788888887554 56666653 44567777765
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=8.6e-09 Score=87.13 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=79.9
Q ss_pred ceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccc
Q 016694 8 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 87 (384)
+.++++++ .+..+ |..+ .++|++|+++++ +++.++. .+.++++|++|++++| .+..+++..+.
T Consensus 13 ~~l~~~~~-~l~~i----p~~~--~~~l~~L~L~~n-~i~~ip~--~~~~l~~L~~L~Ls~N-~i~~i~~~~f~------ 75 (193)
T 2wfh_A 13 TVVRCSNK-GLKVL----PKGI--PRDVTELYLDGN-QFTLVPK--ELSNYKHLTLIDLSNN-RISTLSNQSFS------ 75 (193)
T ss_dssp TEEECTTS-CCSSC----CSCC--CTTCCEEECCSS-CCCSCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTT------
T ss_pred CEEEcCCC-CCCcC----CCCC--CCCCCEEECCCC-cCchhHH--HhhcccCCCEEECCCC-cCCEeCHhHcc------
Confidence 45666666 56655 5543 367888888887 6666642 3568888888888888 77777654432
Q ss_pred cCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCC
Q 016694 88 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKE 150 (384)
Q Consensus 88 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~ 150 (384)
.+++|++|+++++. ++.++. .....+++|+.|+++++ .++.++ +++|++|.+++++
T Consensus 76 ---~l~~L~~L~Ls~N~-l~~i~~--~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 76 ---NMTQLLTLILSYNR-LRCIPP--RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ---TCTTCCEEECCSSC-CCBCCT--TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ---CCCCCCEEECCCCc-cCEeCH--HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 67788888888776 555554 23556788888888875 344443 3457788887665
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=2.8e-09 Score=86.06 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=72.9
Q ss_pred cccccEEeeccCccc-ccccCCcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccc
Q 016694 204 FANLIRLKISECSKL-QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 282 (384)
Q Consensus 204 ~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 282 (384)
.++|++|++++|..- ..+|..+..+++|+.|++++| .++.+ ..+..+++|++|++++|. +...+.. .
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~~~~-------~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGGLEV-------L 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSCTHH-------H
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccchHHH-------H
Confidence 456666666665322 255555566667777777665 34443 334556677777776643 3321111 1
Q ss_pred eeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC----CCcCCCCCeeeccC
Q 016694 283 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPT 345 (384)
Q Consensus 283 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~~~~~~~L~~l~i~ 345 (384)
...+++|++|+++++ .++.++.......+++|++|++++| .++.+|. .+..+++|++++++
T Consensus 84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 112666777777664 3554432123566788888888877 4555554 34557788887765
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=3.3e-08 Score=90.86 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=66.5
Q ss_pred ccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCccc-EEeecccccccEecccccCccc
Q 016694 203 AFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLG-RMKIADCKMIEQIIQLQVGEEA 280 (384)
Q Consensus 203 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~ 280 (384)
.+++|+.+++.++ .++.++. .+..+.+|+.+++.+. ++.+.. ..+.++++|+ .+++.+ .++.+...
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~------ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFG------ 291 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTT------
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchh------
Confidence 3677888888764 3666654 3567778888888763 666633 3456778888 888876 45555332
Q ss_pred cceeeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 016694 281 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 319 (384)
Q Consensus 281 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~ 319 (384)
....+++|+.|++.+ .+++.+... .+.++++|++++
T Consensus 292 -aF~~c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp -TTTTCTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEE
T ss_pred -hhhCCccCCEEEeCC-CccCccchh-hhcCCcchhhhc
Confidence 222377788888754 467777654 366778888775
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.78 E-value=6.6e-08 Score=81.65 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=85.5
Q ss_pred cEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCccc
Q 016694 36 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN 115 (384)
Q Consensus 36 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 115 (384)
++++++++ +++.+|.. -.++|++|++++| .+..++... . .+++|++|+++++. ++.++. ..
T Consensus 13 ~~l~~~~~-~l~~ip~~----~~~~l~~L~L~~n-~i~~ip~~~------~----~l~~L~~L~Ls~N~-i~~i~~--~~ 73 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG----IPRDVTELYLDGN-QFTLVPKEL------S----NYKHLTLIDLSNNR-ISTLSN--QS 73 (193)
T ss_dssp TEEECTTS-CCSSCCSC----CCTTCCEEECCSS-CCCSCCGGG------G----GCTTCCEEECCSSC-CCCCCT--TT
T ss_pred CEEEcCCC-CCCcCCCC----CCCCCCEEECCCC-cCchhHHHh------h----cccCCCEEECCCCc-CCEeCH--hH
Confidence 67888876 67777532 2368999999999 788776322 1 78899999999887 666654 24
Q ss_pred ccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccccc
Q 016694 116 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 195 (384)
Q Consensus 116 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 195 (384)
...+++|++|+++++ .++.++. ..++.+++|+.|+++++ .+..++.
T Consensus 74 f~~l~~L~~L~Ls~N-~l~~i~~--------------------------------~~f~~l~~L~~L~L~~N-~l~~~~~ 119 (193)
T 2wfh_A 74 FSNMTQLLTLILSYN-RLRCIPP--------------------------------RTFDGLKSLRLLSLHGN-DISVVPE 119 (193)
T ss_dssp TTTCTTCCEEECCSS-CCCBCCT--------------------------------TTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred ccCCCCCCEEECCCC-ccCEeCH--------------------------------HHhCCCCCCCEEECCCC-CCCeeCh
Confidence 567889999999885 3443321 01226788888888887 5555433
Q ss_pred cccccccccccccEEeeccCc
Q 016694 196 ENDESNKAFANLIRLKISECS 216 (384)
Q Consensus 196 ~~~~~~~~~~~L~~L~l~~~~ 216 (384)
.. ...+++|+.|++++++
T Consensus 120 ~~---~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 120 GA---FNDLSALSHLAIGANP 137 (193)
T ss_dssp TT---TTTCTTCCEEECCSSC
T ss_pred hh---hhcCccccEEEeCCCC
Confidence 21 2457788888888754
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.78 E-value=1.1e-08 Score=85.09 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCCCCceEecCCCcCcceecccCCCCCCCCC-CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 3 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
.+++|++|+++++ .+..+ |. +..+. +|++|++++| .++++. .++.+++|++|++++| .+..+++....
T Consensus 17 ~~~~L~~L~l~~n-~l~~i----~~-~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N-~l~~~~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVI----EN-LGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNN-RICRIGEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTS-CCCSC----CC-GGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred CcCCceEEEeeCC-CCchh----HH-hhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCC-cccccCcchhh
Confidence 3456677777766 45443 22 33333 6777777766 555541 1356677777777776 66666543311
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 130 (384)
.+++|++|+++++. ++.++. ......+++|+.|+++++
T Consensus 86 ---------~l~~L~~L~L~~N~-i~~~~~-~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 86 ---------ALPDLTELILTNNS-LVELGD-LDPLASLKSLTYLCILRN 123 (176)
T ss_dssp ---------HCTTCCEEECCSCC-CCCGGG-GGGGGGCTTCCEEECCSS
T ss_pred ---------cCCCCCEEECCCCc-CCcchh-hHhhhcCCCCCEEEecCC
Confidence 56667777776665 444443 123345566666666654
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.77 E-value=2.9e-08 Score=83.75 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCCceEecCCCcCcceecccCCC--CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQAL--PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 82 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~--~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 82 (384)
.+|++|+++++ .+..+ ++ .++.+++|++|++++| +++++.+.. ++++++|++|++++| .+..+++....
T Consensus 29 ~~l~~L~l~~n-~i~~~----~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~- 99 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRI----SSDGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNKMFL- 99 (192)
T ss_dssp TTCSEEECCSC-CCCSB----CCSCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSSSST-
T ss_pred CCCCEEECCCC-cCCcc----CCccccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCCccCHHHhc-
Confidence 48999999999 56665 43 3688999999999998 778775544 578999999999999 89888775432
Q ss_pred ccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 83 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 83 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+++++. ++.+.. .....+++|++|++++++
T Consensus 100 --------~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 100 --------GLHQLKTLNLYDNQ-ISCVMP--GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp --------TCTTCCEEECCSSC-CCEECT--TSSTTCTTCCEEECTTCC
T ss_pred --------CCCCCCEEECCCCc-CCeeCH--HHhhcCCCCCEEEeCCCC
Confidence 68999999999987 555533 256678899999998864
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.75 E-value=3.8e-08 Score=81.78 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=53.0
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
++|++|++++| +++.+++. .++.+++|++|++++| .+..+++.... .+++|++|+++++. ++.++.
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~N~-l~~~~~- 93 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHG-VFDKLTQLTKLSLSQN-QIQSLPDGVFD---------KLTKLTILYLHENK-LQSLPN- 93 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CCCCCT-
T ss_pred CCCcEEEeCCC-cccEeCHH-HhcCcccccEEECCCC-cceEeChhHcc---------CCCccCEEECCCCC-ccccCH-
Confidence 56666666665 44544332 2345666666666666 55555443321 45566666666554 444433
Q ss_pred cccccCCCCceeEeeccCCCccccc------CCCeeEEEecCCC
Q 016694 113 TENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKE 150 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~i~~~~ 150 (384)
.....+++|++|+++++ .++.++ .++|++|++++++
T Consensus 94 -~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 94 -GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 12344566666666654 333332 2345666665544
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.74 E-value=1.9e-09 Score=109.57 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=25.6
Q ss_pred hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694 56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 129 (384)
Q Consensus 56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 129 (384)
..+++|++|++++| .+..++...+ .+++|++|+++++. ++.+|. .+..+++|++|++++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~----------~l~~L~~L~Ls~N~-l~~lp~---~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIF----------KYDFLTRLYLNGNS-LTELPA---EIKNLSNLRVLDLSH 279 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGG----------GCCSCSCCBCTTSC-CSCCCG---GGGGGTTCCEEECTT
T ss_pred ccCCCCcEEECCCC-CCCCCChhhc----------CCCCCCEEEeeCCc-CcccCh---hhhCCCCCCEEeCcC
Confidence 34455555555554 3444333221 34445555554443 333433 334444444444444
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=2.7e-08 Score=98.18 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=79.3
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
..|++|+++++ .+..+ |. ++.+++|++|++++| +++.+|.. ++++++|++|++++| .+++++ ...
T Consensus 441 ~~L~~L~Ls~n-~l~~l----p~-~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~Ls~N-~l~~lp-~l~---- 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVL----CH-LEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDN-ALENVD-GVA---- 505 (567)
T ss_dssp TTCSEEECTTS-CCSSC----CC-GGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGT----
T ss_pred cCceEEEecCC-CCCCC----cC-ccccccCcEeecCcc-cccccchh--hhcCCCCCEEECCCC-CCCCCc-ccC----
Confidence 35888999998 66665 65 788999999999988 67766443 678999999999998 788765 221
Q ss_pred ccccCCcccccceeccCcccccccc--ccCcccccCCCCceeEeeccCC
Q 016694 85 KEHIGPLFPKLFELTLMDLPKLKRF--CNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+++++. ++.+ |. .+..+++|+.|++++++
T Consensus 506 ------~l~~L~~L~Ls~N~-l~~~~~p~---~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 506 ------NLPRLQELLLCNNR-LQQSAAIQ---PLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp ------TCSSCCEEECCSSC-CCSSSTTG---GGGGCTTCCEEECTTSG
T ss_pred ------CCCCCcEEECCCCC-CCCCCCcH---HHhcCCCCCEEEecCCc
Confidence 78899999998886 6666 44 56778899999998863
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.71 E-value=1.1e-07 Score=79.03 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=84.5
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCc
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 113 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 113 (384)
+.+.++++++ +++.++.. -.++|++|++++| .+..+++.... .+++|++|+++++. ++.++.
T Consensus 8 ~~~~l~~~~~-~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~-- 69 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTG----IPSSATRLELESN-KLQSLPHGVFD---------KLTQLTKLSLSQNQ-IQSLPD-- 69 (177)
T ss_dssp ETTEEECCSS-CCSSCCTT----CCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCSEEECCSSC-CCCCCT--
T ss_pred CCCEEEecCC-CCccCCCC----CCCCCcEEEeCCC-cccEeCHHHhc---------CcccccEEECCCCc-ceEeCh--
Confidence 3567787776 66666432 3478999999998 78777654432 67889999999886 666654
Q ss_pred ccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccccc
Q 016694 114 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL 193 (384)
Q Consensus 114 ~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l 193 (384)
.....+++|+.|+++++ .++.++.. .++.+++|+.|+++++ .+..+
T Consensus 70 ~~~~~l~~L~~L~l~~N-~l~~~~~~--------------------------------~~~~l~~L~~L~l~~N-~l~~~ 115 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHEN-KLQSLPNG--------------------------------VFDKLTQLKELALDTN-QLKSV 115 (177)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTT--------------------------------TTTTCTTCCEEECCSS-CCSCC
T ss_pred hHccCCCccCEEECCCC-CccccCHH--------------------------------HhhCCcccCEEECcCC-cceEe
Confidence 23467888999998885 34322100 0125778888888877 55544
Q ss_pred cccccccccccccccEEeeccCc
Q 016694 194 WKENDESNKAFANLIRLKISECS 216 (384)
Q Consensus 194 ~~~~~~~~~~~~~L~~L~l~~~~ 216 (384)
+... ...+++|++|++++++
T Consensus 116 ~~~~---~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 116 PDGI---FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CTTT---TTTCTTCCEEECCSSC
T ss_pred CHHH---hcCCcccCEEEecCCC
Confidence 3321 2457788888888764
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=4.3e-06 Score=78.77 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred ccCCccEEecccccccccccccccccccccccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCC----eeecccc
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGL----INVLTLS 249 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l----~~l~~~~ 249 (384)
.+++|+.+++.. ++..+....| .. .+|+.+.+.+ .++.++. .+..+++|+.+.+.+...- ..+. ..
T Consensus 224 ~~~~L~~l~l~~--~l~~I~~~aF---~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~ 294 (401)
T 4fdw_A 224 KTSQLKTIEIPE--NVSTIGQEAF---RE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PY 294 (401)
T ss_dssp TCTTCCCEECCT--TCCEECTTTT---TT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TT
T ss_pred CCCCCCEEecCC--CccCcccccc---cc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HH
Confidence 677888888865 3555544333 22 5788888854 4666643 4567889999998764311 1232 34
Q ss_pred cccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCcc
Q 016694 250 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIF 329 (384)
Q Consensus 250 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~l 329 (384)
.+.++++|+.+.+.+ .++.+... ....+++|+.+.+.+ +++.+... .+.++ +|+++.+.++. +..+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~-------aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n~-~~~l 360 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQG-------LLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGTT-PPQV 360 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTT-------TTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCSS-CCBC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhh-------hhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCCC-Cccc
Confidence 467888999998874 46555432 222367888888844 47777654 36677 99999998873 3444
Q ss_pred CCC-CcCC-CCCeeeccCCC
Q 016694 330 SQG-VVDA-PKLNKVKPTEE 347 (384)
Q Consensus 330 p~~-~~~~-~~L~~l~i~~~ 347 (384)
+.+ +.+. .+++.+++...
T Consensus 361 ~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 361 FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSSCCCSCTTCCEEEECGG
T ss_pred ccccccCCCCCccEEEeCHH
Confidence 433 3334 46778888765
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.66 E-value=2.7e-08 Score=101.19 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccc
Q 016694 2 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 81 (384)
..+++|+.|+++++ .+..+ |..+..+++|++|+|++| .++.+|. . ++++++|++|++++| .+..+|....
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l----~~~~~~l~~L~~L~Ls~N-~l~~lp~-~-~~~l~~L~~L~Ls~N-~l~~lp~~~~- 290 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNI----SANIFKYDFLTRLYLNGN-SLTELPA-E-IKNLSNLRVLDLSHN-RLTSLPAELG- 290 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCC----CGGGGGCCSCSCCBCTTS-CCSCCCG-G-GGGGTTCCEEECTTS-CCSSCCSSGG-
T ss_pred ccCCCCcEEECCCC-CCCCC----ChhhcCCCCCCEEEeeCC-cCcccCh-h-hhCCCCCCEEeCcCC-cCCccChhhc-
Confidence 34567777888777 45555 555667778888888877 5665543 2 467788888888887 6766644332
Q ss_pred cccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 82 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+++++. ++.+|. .+..+++|+.|+++++.
T Consensus 291 ---------~l~~L~~L~L~~N~-l~~lp~---~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 291 ---------SCFQLKYFYFFDNM-VTTLPW---EFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ---------GGTTCSEEECCSSC-CCCCCS---STTSCTTCCCEECTTSC
T ss_pred ---------CCCCCCEEECCCCC-CCccCh---hhhcCCCccEEeCCCCc
Confidence 66778888887775 566665 46677788888877754
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=1.5e-07 Score=77.60 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=80.6
Q ss_pred CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694 7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 86 (384)
.+.++++++ .+..+ |..+ .++|++|++++| +++.+++.. ++++++|++|++++| .+..+++..+.
T Consensus 11 ~~~l~~s~n-~l~~i----p~~~--~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~f~----- 75 (170)
T 3g39_A 11 GTTVDCSGK-SLASV----PTGI--PTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN-QLTVLPAGVFD----- 75 (170)
T ss_dssp TTEEECTTS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCCTTTTT-----
T ss_pred CCEEEeCCC-CcCcc----CccC--CCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC-CcCccChhhcc-----
Confidence 577888888 67766 7654 489999999998 778875543 568999999999999 88888775532
Q ss_pred ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+++++. ++.++. .....+++|++|++++++
T Consensus 76 ----~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 ----KLTQLTQLSLNDNQ-LKSIPR--GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp ----TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSSC
T ss_pred ----CCCCCCEEECCCCc-cCEeCH--HHhcCCCCCCEEEeCCCC
Confidence 78899999999886 666665 235678899999998854
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.60 E-value=1.6e-07 Score=77.91 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=79.2
Q ss_pred CceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccc
Q 016694 7 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 86 (384)
-+.++++++ .+..+ |..+ .++|++|++++| +++++++.. ++++++|++|++++| .+..+++..+.
T Consensus 14 ~~~l~~~~n-~l~~i----P~~~--~~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~----- 78 (174)
T 2r9u_A 14 QTLVNCQNI-RLASV----PAGI--PTDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAIPTGVFD----- 78 (174)
T ss_dssp SSEEECCSS-CCSSC----CSCC--CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT-----
T ss_pred CcEEEeCCC-CCCcc----CCCc--CCCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCccChhHhC-----
Confidence 367888887 56666 7654 389999999998 778775543 568999999999999 88888765432
Q ss_pred ccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 87 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+++++. ++.++. .....+++|++|++++++
T Consensus 79 ----~l~~L~~L~L~~N~-l~~l~~--~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 ----KLTQLTQLDLNDNH-LKSIPR--GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp ----TCTTCCEEECCSSC-CCCCCT--TTTTTCTTCSEEECCSSC
T ss_pred ----CcchhhEEECCCCc-cceeCH--HHhccccCCCEEEeCCCC
Confidence 68899999999886 666665 235678899999998864
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.60 E-value=1.6e-09 Score=92.03 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=69.2
Q ss_pred CCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694 28 PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK 107 (384)
Q Consensus 28 ~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 107 (384)
.+..+++|++|++++| +++.++ .++++++|++|++++| .+..++.... .+++|++|+++++. ++
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~---~~~~l~~L~~L~l~~n-~l~~l~~~~~----------~~~~L~~L~L~~N~-l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS---SLSGMENLRILSLGRN-LIKKIENLDA----------VADTLEELWISYNQ-IA 106 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC---CHHHHTTCCEEEEEEE-EECSCSSHHH----------HHHHCSEEEEEEEE-CC
T ss_pred HHhcCCCCCEEECCCC-CCcccc---ccccCCCCCEEECCCC-Ccccccchhh----------cCCcCCEEECcCCc-CC
Confidence 5667888888888887 666654 2567888888888888 6766654321 45788888888775 55
Q ss_pred ccccCcccccCCCCceeEeeccCCCccccc-------CCCeeEEEecCCC
Q 016694 108 RFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKE 150 (384)
Q Consensus 108 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~i~~~~ 150 (384)
.++. ...+++|++|+++++. ++.++ .++|++|.++++.
T Consensus 107 ~l~~----~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 SLSG----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CHHH----HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCc----cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 5542 4567788888887753 33221 4567888887655
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.51 E-value=1.2e-05 Score=75.69 Aligned_cols=150 Identities=9% Similarity=0.115 Sum_probs=101.0
Q ss_pred cCCccEEecccccccccccccccccccccccccEEeeccCcccccccCCcccCCCcCEEEeecCCCCeeecccccccccC
Q 016694 176 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 255 (384)
Q Consensus 176 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 255 (384)
+.+|+.+.+.. +++.+.... ...+++|+.+.+.+ .++.++...-.-.+|+.+.+.+ +++.+.. ..+.+++
T Consensus 202 ~~~L~~l~lp~--~l~~I~~~a---F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~-~aF~~c~ 271 (401)
T 4fdw_A 202 YAGIEEVLLPV--TLKEIGSQA---FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIAS-RAFYYCP 271 (401)
T ss_dssp TCCCSEEECCT--TCCEECTTT---TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECT-TTTTTCT
T ss_pred ecccCEEEeCC--chheehhhH---hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEECh-hHhhCCC
Confidence 46778887763 355553332 25778899999975 4666654433337899999964 5776643 3457889
Q ss_pred cccEEeeccccc----ccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCC
Q 016694 256 NLGRMKIADCKM----IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 331 (384)
Q Consensus 256 ~L~~L~l~~c~~----l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~ 331 (384)
+|+.+.+.+... +..+... ....+++|+.+.+.+ +++.+... .+.+|++|+.+.+.. .++.++.
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~-------aF~~c~~L~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~ 339 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPY-------CLEGCPKLARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA--NVTQINF 339 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTT-------TTTTCTTCCEECCCT--TCCEECTT-TTTTCCSCCEEEECT--TCCEECT
T ss_pred CCCEEEeCCccccCCcccEECHH-------HhhCCccCCeEEeCC--ceEEEhhh-hhcCCCCccEEEECc--cccEEcH
Confidence 999999976321 1123221 222378899998873 57777664 377899999999955 4777765
Q ss_pred C-CcCCCCCeeeccCCCC
Q 016694 332 G-VVDAPKLNKVKPTEEE 348 (384)
Q Consensus 332 ~-~~~~~~L~~l~i~~~~ 348 (384)
. +..+ +|+.+.+.++.
T Consensus 340 ~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TSSSSS-CCCEEEECCSS
T ss_pred HhCCCC-CCCEEEEcCCC
Confidence 4 4456 99999999873
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=4.5e-08 Score=80.56 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=46.4
Q ss_pred CcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCcccccee---eecccceeecccCCCCceecCC
Q 016694 230 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV---VFEELGYLGLDCLPSLTSFCLG 306 (384)
Q Consensus 230 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~c~~L~~l~~~ 306 (384)
+|+.|++++|. +++..... ..++++|+.|++++|..+++. |...... ..++|++|++++|+++++-...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDG------CLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHH------HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHH------HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 45555555554 44332222 235555666666665544421 1100000 1345677777777666665443
Q ss_pred CcccCCCCccEEEeccCCCCCc
Q 016694 307 NYALEFPSLEHVVVRQCPTMKI 328 (384)
Q Consensus 307 ~~~~~~~~L~~L~l~~c~~l~~ 328 (384)
. +..+++|++|++++|+.++.
T Consensus 134 ~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 A-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-GGGCTTCCEEEEESCTTCCC
T ss_pred H-HhcCCCCCEEECCCCCCCCc
Confidence 2 34567777777777776653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=3.6e-09 Score=89.82 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=97.3
Q ss_pred CCccEEEeecCC-CCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccccc
Q 016694 33 NNLRHLVVDDCT-NMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 111 (384)
Q Consensus 33 ~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 111 (384)
-+|+...+.++. .++.++ . .++.+++|++|++++| .+..++ .. . .+++|++|+++++. ++.++.
T Consensus 23 l~l~~~~l~~~~~~l~~l~-~-~~~~l~~L~~L~ls~n-~l~~l~-~~------~----~l~~L~~L~l~~n~-l~~l~~ 87 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMD-A-TLSTLKACKHLALSTN-NIEKIS-SL------S----GMENLRILSLGRNL-IKKIEN 87 (198)
T ss_dssp TTCSEEECCBCCTTCCCCH-H-HHHHTTTCSEEECSEE-EESCCC-CH------H----HHTTCCEEEEEEEE-ECSCSS
T ss_pred cchheeEeccccCcHhhhh-H-HHhcCCCCCEEECCCC-CCcccc-cc------c----cCCCCCEEECCCCC-cccccc
Confidence 356666666542 233332 2 3679999999999999 787765 22 1 78899999999886 666665
Q ss_pred CcccccCCCCceeEeeccCCCcccccCCCeeEEEecCCCCccccccccccccCCcccccCCccccCCccEEecccccccc
Q 016694 112 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 191 (384)
Q Consensus 112 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 191 (384)
....+++|++|+++++ .++.++ ..+.+++|+.|+++++ .+.
T Consensus 88 ---~~~~~~~L~~L~L~~N-~l~~l~----------------------------------~~~~l~~L~~L~l~~N-~i~ 128 (198)
T 1ds9_A 88 ---LDAVADTLEELWISYN-QIASLS----------------------------------GIEKLVNLRVLYMSNN-KIT 128 (198)
T ss_dssp ---HHHHHHHCSEEEEEEE-ECCCHH----------------------------------HHHHHHHSSEEEESEE-ECC
T ss_pred ---hhhcCCcCCEEECcCC-cCCcCC----------------------------------ccccCCCCCEEECCCC-cCC
Confidence 4556789999999986 343221 1225788888988887 344
Q ss_pred cccccccccccccccccEEeeccCcccccccCC----------cccCCCcCEEE
Q 016694 192 HLWKENDESNKAFANLIRLKISECSKLQKLVTP----------SWHLENLATLE 235 (384)
Q Consensus 192 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----------~~~~~~L~~L~ 235 (384)
.+.. ......+++|++|++++++.-...|.. +..+++|+.|+
T Consensus 129 ~~~~--~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 129 NWGE--IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CHHH--HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred chhH--HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 3221 011356788999999887543333221 56788899886
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.5e-07 Score=77.40 Aligned_cols=95 Identities=13% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccC
Q 016694 33 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 112 (384)
Q Consensus 33 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 112 (384)
.+|+.|++++|. +++..... +.+|++|++|++++|..+++..-.... ... ...++|++|++++|..+++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~--~~~---~~~~~L~~L~Ls~C~~ITD~Gl- 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLS--QLE---NLQKSMLEMEIISCGNVTDKGI- 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHH--TCH---HHHHHCCEEEEESCTTCCHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHH--hcc---cccCCCCEEEcCCCCcCCHHHH-
Confidence 479999999995 77765554 368999999999999767543111100 000 0135799999999988876432
Q ss_pred cccccCCCCceeEeeccCCCcccc
Q 016694 113 TENIIEMPELRYLAIENCPDMETF 136 (384)
Q Consensus 113 ~~~~~~~~~L~~L~l~~c~~l~~~ 136 (384)
..+..+++|++|++++|+.+++.
T Consensus 133 -~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 -IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp -HHGGGCTTCCEEEEESCTTCCCH
T ss_pred -HHHhcCCCCCEEECCCCCCCCch
Confidence 23457899999999999998864
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.35 E-value=9.1e-07 Score=73.23 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=69.0
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
++|++|+++++ .+..+ .|..+..+++|++|++++| +++.+++. .++++++|++|++++| .+..+++....
T Consensus 33 ~~L~~L~Ls~N-~l~~~---~~~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~--- 102 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKL---EPGVFDHLVNLQQLYFNSN-KLTAIPTG-VFDKLTQLTQLDLNDN-HLKSIPRGAFD--- 102 (174)
T ss_dssp TTCSEEECCSS-CCCCC---CTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred CCCcEEEeCCC-Ccccc---CHHHhcCCcCCCEEECCCC-CCCccChh-HhCCcchhhEEECCCC-ccceeCHHHhc---
Confidence 68999999999 56654 1556789999999999998 88887554 4578999999999999 88888765432
Q ss_pred ccccCCcccccceeccCccc
Q 016694 85 KEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~~~~ 104 (384)
.+++|++|++++++
T Consensus 103 ------~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 103 ------NLKSLTHIYLYNNP 116 (174)
T ss_dssp ------TCTTCSEEECCSSC
T ss_pred ------cccCCCEEEeCCCC
Confidence 68899999999886
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.33 E-value=1.1e-06 Score=72.31 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred CCCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 4 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
.++|++|+++++ .+..+ .|..+..+++|++|++++| +++.+++. .++++++|++|++++| .++.+++....
T Consensus 29 ~~~l~~L~L~~N-~i~~~---~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~N-~l~~~~~~~~~-- 99 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKL---EPGVFDRLTQLTRLDLDNN-QLTVLPAG-VFDKLTQLTQLSLNDN-QLKSIPRGAFD-- 99 (170)
T ss_dssp CTTCSEEECCSS-CCCCC---CTTTTTTCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred CCCCcEEEcCCC-cCCcc---ChhhhcCcccCCEEECCCC-CcCccChh-hccCCCCCCEEECCCC-ccCEeCHHHhc--
Confidence 368999999999 56654 1556789999999999998 78887554 3578999999999999 89888775432
Q ss_pred cccccCCcccccceeccCccc
Q 016694 84 DKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~ 104 (384)
.+++|++|++++++
T Consensus 100 -------~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 100 -------NLKSLTHIWLLNNP 113 (170)
T ss_dssp -------TCTTCCEEECCSSC
T ss_pred -------CCCCCCEEEeCCCC
Confidence 78899999999886
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.28 E-value=3.3e-05 Score=72.55 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=49.1
Q ss_pred ccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccC
Q 016694 251 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 330 (384)
Q Consensus 251 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp 330 (384)
+..+.+|+.+.+.+ .++.+... ....+.+|+.+++.+ +++.+... .+.+|.+|+.+.+... ++.+.
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~-aF~~c~~L~~i~lp~~--l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLPY--LVEEIGKR-SFRGCTSLSNINFPLS--LRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEECTT-TTTTCTTCCEECCCTT--CCEEC
T ss_pred cccccccccccccc--ccceechh-------hhcCCCCCCEEEeCC--cccEEhHH-hccCCCCCCEEEECcc--ccEeh
Confidence 44566777777653 24444221 122266777777743 36666543 3667888888887543 56665
Q ss_pred CC-CcCCCCCeeeccCCC
Q 016694 331 QG-VVDAPKLNKVKPTEE 347 (384)
Q Consensus 331 ~~-~~~~~~L~~l~i~~~ 347 (384)
.. +..+++|+.+.+...
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 43 345788888887654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.28 E-value=2.4e-08 Score=93.37 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=29.7
Q ss_pred ccCCccEEecccccccccccccccc-cccccccccEEeeccCcccc-----cccCCcccCCCcCEEEeecCC
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ-----KLVTPSWHLENLATLEVSKCH 240 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~ 240 (384)
..++|++|+++++ .+.+.....+. ....+++|++|++++|. ++ .++..+...++|++|+++++.
T Consensus 181 ~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 181 GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3555666666655 23221100000 01234566666666653 22 222233455667777777654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.26 E-value=2.8e-06 Score=78.38 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=75.1
Q ss_pred eEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccccccc
Q 016694 9 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI 88 (384)
Q Consensus 9 ~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 88 (384)
.++.++...+..+ |. +..+++|++|+|+++.++..+++.. ++++++|++|++++| .+..+++..+.
T Consensus 12 ~v~~~~~n~l~~i----p~-l~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~------- 77 (347)
T 2ifg_A 12 GLRCTRDGALDSL----HH-LPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPDAFH------- 77 (347)
T ss_dssp CEECCSSCCCTTT----TT-SCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTTGGG-------
T ss_pred EEEcCCCCCCCcc----CC-CCCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-ccceeCHHHhc-------
Confidence 3455555345555 77 8888999999998633888886543 568999999999999 88888776543
Q ss_pred CCcccccceeccCccccccccccCcccccCCCCceeEeeccCC
Q 016694 89 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 131 (384)
Q Consensus 89 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 131 (384)
.+++|++|+|+++. ++.++. .......|+.|++.+++
T Consensus 78 --~l~~L~~L~l~~N~-l~~~~~---~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 78 --FTPRLSRLNLSFNA-LESLSW---KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp --SCSCCCEEECCSSC-CSCCCS---TTTCSCCCCEEECCSSC
T ss_pred --CCcCCCEEeCCCCc-cceeCH---HHcccCCceEEEeeCCC
Confidence 78899999999876 677765 22222338888887753
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.09 E-value=3.2e-06 Score=78.39 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.4
Q ss_pred CCCceeEeeccC
Q 016694 119 MPELRYLAIENC 130 (384)
Q Consensus 119 ~~~L~~L~l~~c 130 (384)
.++|++|++..|
T Consensus 192 ~~~L~~L~L~~~ 203 (362)
T 2ra8_A 192 RPNLKSLEIISG 203 (362)
T ss_dssp CTTCSEEEEECS
T ss_pred CCCCcEEEEecC
Confidence 455555555544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.05 E-value=9.2e-06 Score=74.82 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=68.4
Q ss_pred CCCCCCceEecCC-CcCcceecccCC-CCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecccc
Q 016694 2 IGFRDIKYLQLGH-FPRLQEIWHGQA-LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 79 (384)
Q Consensus 2 ~~~~~L~~L~l~~-~~~~~~i~~~~p-~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 79 (384)
..+++|++|+|++ + .+..+ | ..+..+++|++|+|++| +++++++.. ++++++|++|++++| .+..+++..
T Consensus 28 ~~~~~L~~L~l~~~n-~l~~~----~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 28 PGAENLTELYIENQQ-HLQHL----ELRDLRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp CSCSCCSEEECCSCS-SCCEE----CGGGSCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred CCCCCeeEEEccCCC-CCCCc----ChhHhccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-ccceeCHHH
Confidence 4567899999997 6 77776 4 46789999999999998 788886654 579999999999999 888887655
Q ss_pred cccccccccCCcccccceeccCccc
Q 016694 80 ELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
+. .+ .|++|++.++.
T Consensus 100 ~~---------~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQ---------GL-SLQELVLSGNP 114 (347)
T ss_dssp TC---------SC-CCCEEECCSSC
T ss_pred cc---------cC-CceEEEeeCCC
Confidence 32 23 39999998775
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=0.00071 Score=63.31 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred cccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccceeeecccceeecccCCCCceec
Q 016694 225 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 304 (384)
Q Consensus 225 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 304 (384)
+..+.+|+.+.+.. +++.+.. ..+.++.+|+.+++.+ .++.+-.. ....+.+|+.+.+.. +++.+.
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~-------aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGKR-------SFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECTT-------TTTTCTTCCEECCCT--TCCEEC
T ss_pred cccccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhHH-------hccCCCCCCEEEECc--cccEeh
Confidence 45678888888864 4666633 2356788999998864 35555322 222377888888853 377776
Q ss_pred CCCcccCCCCccEEEeccCCCCCccCCCCcCCCCCeee
Q 016694 305 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKV 342 (384)
Q Consensus 305 ~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~~~~L~~l 342 (384)
.. .+.+|++|+++.+... ++.+...+.+.++|+.+
T Consensus 359 ~~-aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 359 AN-AFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT-TBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred HH-HhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 54 3778999999998653 44454455567777765
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=3.4e-07 Score=85.51 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.7
Q ss_pred CCCCEEEEecc
Q 016694 59 NNLRWLEVRNC 69 (384)
Q Consensus 59 ~~L~~L~l~~~ 69 (384)
++|++|++++|
T Consensus 72 ~~L~~L~Ls~n 82 (372)
T 3un9_A 72 SSLRQLNLAGV 82 (372)
T ss_dssp TTCCEEECTTS
T ss_pred hhCCEEEecCC
Confidence 55666666666
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.0027 Score=59.28 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=57.7
Q ss_pred CCceEecCCCcCcceecccCCCCCCCCCCccEEEeecC--CCCcccCchhHHhcCCCCCEEEEecccCcceecccccccc
Q 016694 6 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 83 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c--~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 83 (384)
.|+.+.+.+. ++.|- ..++..+.+|+.+.+..+ ..++.+...+ +.++.+|+.+.+.+ .++.+....+.
T Consensus 65 ~L~sI~iP~s--vt~Ig---~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a-F~~c~~L~~i~~~~--~~~~I~~~aF~-- 134 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIG---SNAFYNCTSLKRVTIQDNKPSCVKKIGRQA-FMFCSELTDIPILD--SVTEIDSEAFH-- 134 (394)
T ss_dssp CCCEEEECTT--CCEEC---TTTTTTCTTCCEEEEGGGCCCCCCEECTTT-TTTCTTCCBCGGGT--TCSEECTTTTT--
T ss_pred cCEEEEECCC--eeEEh---HHHhhCCccCceEeecCCCCCeeeEechhh-chhcccceeeccCC--ccceehhhhhh--
Confidence 4788877643 45541 235678899999998764 2355553333 45777777766544 35555444332
Q ss_pred cccccCCcccccceeccCccccccccccCcccccCCCCceeEeec
Q 016694 84 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIE 128 (384)
Q Consensus 84 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~ 128 (384)
.+.+|+.+.+.. .++.+.. .....+..|+.+.+.
T Consensus 135 -------~c~~L~~i~lp~--~~~~I~~--~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 -------HCEELDTVTIPE--GVTSVAD--GMFSYCYSLHTVTLP 168 (394)
T ss_dssp -------TCTTCCEEECCT--TCCEECT--TTTTTCTTCCEEECC
T ss_pred -------hhcccccccccc--eeeeecc--cceeccccccccccc
Confidence 566777776643 2333332 122345566666654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.76 E-value=2.3e-05 Score=72.60 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCCCceEecCCCcCc--ceeccc---CCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceecc
Q 016694 3 GFRDIKYLQLGHFPRL--QEIWHG---QALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH 77 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~--~~i~~~---~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 77 (384)
.+++|+.|.+.+...- +-.|.. ....+..+++|+.|++++|..+ .+++ + .+++|++|++..| .+..-..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~---~-~~~~L~~L~L~~~-~l~~~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK---K-PRPNLKSLEIISG-GLPDSVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS---C-BCTTCSEEEEECS-BCCHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc---c-cCCCCcEEEEecC-CCChHHH
Confidence 4689999999765210 111322 1122356789999999987433 2322 2 4799999999988 5542211
Q ss_pred cccccccccccCCcccccceeccCccc-------cccccccCcccccCCCCceeEeeccCCC
Q 016694 78 LEELNADKEHIGPLFPKLFELTLMDLP-------KLKRFCNFTENIIEMPELRYLAIENCPD 132 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 132 (384)
... ... .+|+|++|++.... .+..+.. ......+|+|++|++.+|..
T Consensus 211 ~~l---~~~----~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 211 EDI---LGS----DLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp HHH---HHS----BCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTT
T ss_pred HHH---HHc----cCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCC
Confidence 010 011 57899999885321 1222221 11224589999999998754
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.94 E-value=0.042 Score=51.07 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=68.1
Q ss_pred CCCCCCCceEecCCC--cCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccc
Q 016694 1 MIGFRDIKYLQLGHF--PRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHL 78 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~--~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 78 (384)
|.+|.+|+.+.+.++ ..++.+- ..++..+.+|+.+.+.. +++.+... .+..+.+|+.+.+... +..+...
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig---~~aF~~c~~L~~i~~~~--~~~~I~~~-aF~~c~~L~~i~lp~~--~~~I~~~ 154 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIG---RQAFMFCSELTDIPILD--SVTEIDSE-AFHHCEELDTVTIPEG--VTSVADG 154 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEEC---TTTTTTCTTCCBCGGGT--TCSEECTT-TTTTCTTCCEEECCTT--CCEECTT
T ss_pred hhCCccCceEeecCCCCCeeeEec---hhhchhcccceeeccCC--ccceehhh-hhhhhcccccccccce--eeeeccc
Confidence 467889999999764 2355551 23456778888877765 45555333 3568899999999653 5555444
Q ss_pred ccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeecc
Q 016694 79 EELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 129 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~ 129 (384)
.+. .+.+|+.+.+.+ .++.+.. .......|+.+.+..
T Consensus 155 ~F~---------~c~~L~~i~~~~--~~~~I~~---~aF~~~~l~~i~ip~ 191 (394)
T 4gt6_A 155 MFS---------YCYSLHTVTLPD--SVTAIEE---RAFTGTALTQIHIPA 191 (394)
T ss_dssp TTT---------TCTTCCEEECCT--TCCEECT---TTTTTCCCSEEEECT
T ss_pred cee---------cccccccccccc--eeeEecc---ccccccceeEEEECC
Confidence 432 567788887754 3555544 333445677777754
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.83 E-value=0.00041 Score=61.11 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=56.8
Q ss_pred CCCCccEEEeecCCCCcccCch-hHHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 109 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 109 (384)
.+++|+.|+|++| ++.++... ..++.+++|+.|++++| .+.++..... +. .+ +|++|++.+++.-..+
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~----l~----~l-~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDK----IK----GL-KLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGG----GT----TS-CCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhh----cc----cC-CcceEEccCCcCcccc
Confidence 5788999999988 67765432 24568899999999998 7776532221 11 22 8899999888844434
Q ss_pred ccC----cccccCCCCceeEeec
Q 016694 110 CNF----TENIIEMPELRYLAIE 128 (384)
Q Consensus 110 ~~~----~~~~~~~~~L~~L~l~ 128 (384)
+.. ......+|+|+.|+=.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 320 0134568888888643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.78 E-value=0.00016 Score=60.19 Aligned_cols=12 Identities=0% Similarity=0.011 Sum_probs=6.3
Q ss_pred CCCCCEEEEecc
Q 016694 58 LNNLRWLEVRNC 69 (384)
Q Consensus 58 l~~L~~L~l~~~ 69 (384)
.++|++|++++|
T Consensus 64 ~~~L~~L~Ls~n 75 (185)
T 1io0_A 64 NTYVKKFSIVGT 75 (185)
T ss_dssp CCSCCEEECTTS
T ss_pred CCCcCEEECcCC
Confidence 345555555555
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.74 E-value=0.0012 Score=58.00 Aligned_cols=67 Identities=19% Similarity=0.121 Sum_probs=42.0
Q ss_pred hcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCccccccccccCcccccCCCCceeEeeccCCCc
Q 016694 56 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 133 (384)
Q Consensus 56 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 133 (384)
.++++|++|++++| .+..+.+... ... .+++|++|+++++. ++.+.. ......+ +|+.|++.+++--
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~---~~~----~l~~L~~L~Ls~N~-i~~~~~-l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSS---IVQ----KAPNLKILNLSGNE-LKSERE-LDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTT---HHH----HSTTCCEEECTTSC-CCSGGG-GGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCC-CCCCCccchh---HHh----hCCCCCEEECCCCc-cCCchh-hhhcccC-CcceEEccCCcCc
Confidence 46888888888888 7776543110 011 57888888888776 554432 1122223 7888888886643
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.69 E-value=0.37 Score=44.20 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=46.7
Q ss_pred CCCceEecCCCcCcceecccCCCCCCCCCCccEEEeecCCCCcccCchhHHhcCCCCCEEEEecccCcceeccccccccc
Q 016694 5 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~i~~~~p~~i~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 84 (384)
.+|+.+.+.. .++.|- ..++..+.+|+.+.+.. .++.+...+ +.++ +|+.+.+.. .++.+....+
T Consensus 46 ~~i~~v~ip~--~vt~Ig---~~aF~~C~~L~~I~lp~--~v~~Ig~~a-F~~c-~l~~i~~~~--~l~~I~~~aF---- 110 (379)
T 4h09_A 46 DRISEVRVNS--GITSIG---EANFNSCYNMTKVTVAS--TVTSIGDGA-FADT-KLQSYTGME--RVKKFGDYVF---- 110 (379)
T ss_dssp GGCSEEEECT--TEEEEC---TTTTTTCTTCCEEEECT--TCCEECTTT-TTTC-CCCEEEECT--TCCEECTTTT----
T ss_pred cCCEEEEeCC--CccChH---HHHhhCCCCCCEEEeCC--cceEechhh-hcCC-CCceEECCc--eeeEecccee----
Confidence 4567777653 355551 23567889999999975 466665444 3455 688777754 4666654443
Q ss_pred ccccCCcccccceeccC
Q 016694 85 KEHIGPLFPKLFELTLM 101 (384)
Q Consensus 85 ~~~~~~~~~~L~~L~l~ 101 (384)
...+|+++.+.
T Consensus 111 ------~~~~L~~i~lp 121 (379)
T 4h09_A 111 ------QGTDLDDFEFP 121 (379)
T ss_dssp ------TTCCCSEEECC
T ss_pred ------ccCCcccccCC
Confidence 23467777664
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.56 E-value=0.00043 Score=57.51 Aligned_cols=12 Identities=0% Similarity=0.099 Sum_probs=6.0
Q ss_pred cccceeccCccc
Q 016694 93 PKLFELTLMDLP 104 (384)
Q Consensus 93 ~~L~~L~l~~~~ 104 (384)
++|++|+++++.
T Consensus 65 ~~L~~L~Ls~n~ 76 (185)
T 1io0_A 65 TYVKKFSIVGTR 76 (185)
T ss_dssp CSCCEEECTTSC
T ss_pred CCcCEEECcCCC
Confidence 445555555443
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.13 E-value=0.79 Score=41.93 Aligned_cols=126 Identities=12% Similarity=0.170 Sum_probs=72.6
Q ss_pred cccccEEeeccCcccccccC-CcccCCCcCEEEeecCCCCeeecccccccccCcccEEeecccccccEecccccCccccc
Q 016694 204 FANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 282 (384)
Q Consensus 204 ~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 282 (384)
+.+|+.+.+.. .+..+.. .+..+..|+.+.+.. .++.+.. ..+..+.+|+.+.+.. .+..+... .
T Consensus 216 ~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~-------a 281 (379)
T 4h09_A 216 GKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYL-------L 281 (379)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEECTT-------T
T ss_pred ccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecccc-------c
Confidence 44555555532 2333322 234566777777764 3555532 2345667778777753 34444221 1
Q ss_pred eeeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCCccCCC-CcCCCCCeeeccCCC
Q 016694 283 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 347 (384)
Q Consensus 283 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~~~~L~~l~i~~~ 347 (384)
...+++|+.+.+.+ ..++.+... .+.+|.+|+.+.+.. .++.+... +.++.+|+.+.+...
T Consensus 282 F~~c~~L~~i~l~~-~~i~~I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 282 CSGCSNLTKVVMDN-SAIETLEPR-VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEEECC-TTCCEECTT-TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccc-cccceehhh-hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 22267788888754 346666554 367889999998854 36666543 445788888887543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.88 E-value=0.54 Score=36.01 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=15.8
Q ss_pred CccEEEeecCCCCcccCchhHHhcCCCCCEEEEecc
Q 016694 34 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 69 (384)
Q Consensus 34 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 69 (384)
+|++|+|++| +++.+++ ..+..+++|++|++.+|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPP-GLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCT-TTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccCh-hhhhhccccCEEEecCC
Confidence 4555555554 4444422 22334455555555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.74 E-value=0.65 Score=35.54 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=35.3
Q ss_pred EEEeecCCCCc--ccCchhHHhcC-CCCCEEEEecccCcceecccccccccccccCCcccccceeccCccc
Q 016694 37 HLVVDDCTNML--SAIPANLIRCL-NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 104 (384)
Q Consensus 37 ~L~l~~c~~l~--~~~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 104 (384)
+++.++. +++ .+| . .+ ++|++|++++| .++.++...+. .+++|+.|++.+++
T Consensus 12 ~v~Cs~~-~L~~~~vP-~----~lp~~l~~L~Ls~N-~l~~l~~~~f~---------~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLP-T----AFPVDTTELVLTGN-NLTALPPGLLD---------ALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSC-S----CCCTTCSEEECTTS-CCSSCCTTTGG---------GCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCC-C----CCCcCCCEEECCCC-cCCccChhhhh---------hccccCEEEecCCC
Confidence 5566654 555 553 2 22 46889999988 78888765543 67788888887775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.23 E-value=0.49 Score=39.21 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=46.0
Q ss_pred CCCCccEEEeecCCCCcccCchh---HHhcCCCCCEEEEecccCcceecccccccccccccCCcccccceeccCcccccc
Q 016694 31 FFNNLRHLVVDDCTNMLSAIPAN---LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK 107 (384)
Q Consensus 31 ~l~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 107 (384)
.-+.|+.|+|+++..+.+..... .+..-..|++|++++| .+.+..... ....++ .-..|++|+++++. +.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~a-lA~aL~----~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARG-LIELIE----TSPSLRVLNVESNF-LT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTT-HHHHHH----HCSSCCEEECCSSB-CC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHH-HHHHHh----cCCccCeEecCCCc-CC
Confidence 34567777777653444321111 1234467788888777 554332111 111112 33567788777665 22
Q ss_pred ccc--cCcccccCCCCceeEeeccC
Q 016694 108 RFC--NFTENIIEMPELRYLAIENC 130 (384)
Q Consensus 108 ~~~--~~~~~~~~~~~L~~L~l~~c 130 (384)
.-. .+......-+.|++|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 110 00112233445888888754
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=60.27 E-value=2.3 Score=35.08 Aligned_cols=64 Identities=6% Similarity=0.025 Sum_probs=27.1
Q ss_pred ccCCccEEecccccccccccccccc-cccccccccEEeeccCccc----ccccCCcccCCCcCEEEeecC
Q 016694 175 AFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKL----QKLVTPSWHLENLATLEVSKC 239 (384)
Q Consensus 175 ~~~~L~~L~l~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~~~~l----~~l~~~~~~~~~L~~L~l~~c 239 (384)
.-..|+.|+|+++ .+.+.....+. ....-+.|++|+++++..- ..+...+..-..|++|+++++
T Consensus 68 ~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3456666666665 33321111000 0112245666666654321 112223344445666666543
Done!