Query 016696
Match_columns 384
No_of_seqs 189 out of 1330
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02632 phytoene synthase 100.0 2.4E-70 5.2E-75 540.6 38.5 328 54-381 6-333 (334)
2 TIGR03464 HpnC squalene syntha 100.0 1.7E-63 3.7E-68 478.1 30.8 264 105-374 2-266 (266)
3 TIGR03465 HpnD squalene syntha 100.0 3.9E-63 8.5E-68 475.5 31.5 265 105-375 2-266 (266)
4 cd00683 Trans_IPPS_HH Trans-Is 100.0 1.3E-61 2.7E-66 464.5 30.9 263 98-365 1-265 (265)
5 COG1562 ERG9 Phytoene/squalene 100.0 2.2E-56 4.8E-61 431.1 30.7 282 91-377 4-287 (288)
6 PF00494 SQS_PSY: Squalene/phy 100.0 1.8E-57 3.8E-62 435.4 21.8 257 104-364 1-267 (267)
7 TIGR01559 squal_synth farnesyl 100.0 1E-47 2.2E-52 378.2 29.0 270 97-370 2-292 (336)
8 KOG4411 Phytoene/squalene synt 100.0 4.9E-38 1.1E-42 285.3 26.3 261 94-362 9-276 (292)
9 KOG1459 Squalene synthetase [L 99.9 6.2E-26 1.4E-30 218.3 15.3 315 55-380 82-406 (413)
10 cd00867 Trans_IPPS Trans-Isopr 99.9 1.5E-21 3.3E-26 183.1 14.5 205 110-339 1-234 (236)
11 cd00385 Isoprenoid_Biosyn_C1 I 99.8 8.6E-20 1.9E-24 167.3 12.8 217 110-326 1-229 (243)
12 KOG1459 Squalene synthetase [L 99.7 9.8E-18 2.1E-22 161.9 11.8 266 95-363 31-311 (413)
13 cd00685 Trans_IPPS_HT Trans-Is 96.5 0.39 8.4E-06 45.9 19.1 125 189-328 116-244 (259)
14 PLN02890 geranyl diphosphate s 95.9 0.69 1.5E-05 47.7 18.5 140 189-328 235-399 (422)
15 TIGR02749 prenyl_cyano solanes 95.8 0.59 1.3E-05 46.4 16.9 138 190-327 142-304 (322)
16 PRK10888 octaprenyl diphosphat 95.5 2.5 5.4E-05 42.0 20.1 137 190-327 139-305 (323)
17 TIGR02748 GerC3_HepT heptapren 95.4 2.3 5E-05 42.1 19.5 139 189-327 137-301 (319)
18 PRK10581 geranyltranstransfera 94.7 0.57 1.2E-05 46.0 12.8 124 192-326 153-279 (299)
19 PLN02857 octaprenyl-diphosphat 94.2 0.79 1.7E-05 47.2 12.8 138 190-327 236-398 (416)
20 cd00868 Terpene_cyclase_C1 Ter 93.4 7.2 0.00016 36.9 17.6 195 111-318 33-258 (284)
21 PF03936 Terpene_synth_C: Terp 92.9 4.3 9.3E-05 38.2 14.9 174 112-289 50-253 (270)
22 cd00687 Terpene_cyclase_nonpla 92.8 9.8 0.00021 36.7 26.1 200 111-322 44-269 (303)
23 CHL00151 preA prenyl transfera 92.3 4.7 0.0001 40.0 14.7 137 191-327 144-305 (323)
24 COG0142 IspA Geranylgeranyl py 92.3 13 0.00028 36.9 20.8 137 189-325 142-302 (322)
25 PF00348 polyprenyl_synt: Poly 91.9 2.9 6.3E-05 39.9 12.4 73 195-267 120-194 (260)
26 cd00684 Terpene_cyclase_plant_ 91.6 21 0.00046 38.0 20.3 209 114-338 272-513 (542)
27 PF06330 TRI5: Trichodiene syn 85.7 18 0.00038 36.7 13.1 164 112-290 75-258 (376)
28 cd00686 Terpene_cyclase_cis_tr 69.3 90 0.002 31.4 12.2 162 118-290 81-258 (357)
29 PLN02279 ent-kaur-16-ene synth 66.8 2.2E+02 0.0048 32.0 16.8 95 122-220 515-632 (784)
30 PRK05255 hypothetical protein; 63.2 27 0.00058 31.6 6.7 62 150-219 106-169 (171)
31 PHA01083 hypothetical protein 57.6 28 0.0006 30.7 5.6 62 244-312 19-90 (149)
32 KOG0776 Geranylgeranyl pyropho 48.2 1.8E+02 0.0039 29.7 10.4 116 208-328 229-369 (384)
33 COG3028 Uncharacterized protei 41.4 99 0.0021 28.0 6.6 62 151-220 117-180 (187)
34 TIGR01439 lp_hng_hel_AbrB loop 41.0 12 0.00025 25.0 0.6 21 269-289 5-25 (43)
35 PF04751 DUF615: Protein of un 33.7 85 0.0018 28.0 5.0 60 150-217 95-156 (157)
36 PRK02899 adaptor protein; Prov 27.5 56 0.0012 30.1 2.9 42 271-314 11-52 (197)
37 PF15496 DUF4646: Domain of un 25.2 41 0.00088 28.6 1.4 37 265-310 26-63 (123)
38 COG5204 SPT4 Transcription elo 24.2 40 0.00086 27.5 1.1 17 262-278 90-107 (112)
39 KOG3426 NADH:ubiquinone oxidor 23.5 1.1E+02 0.0023 25.9 3.5 50 119-171 20-71 (124)
40 KOG0367 Protein geranylgeranyl 20.8 2.6E+02 0.0055 27.8 6.0 94 122-216 203-310 (347)
41 PF09712 PHA_synth_III_E: Poly 20.4 6.3E+02 0.014 24.7 8.9 88 128-218 192-280 (293)
No 1
>PLN02632 phytoene synthase
Probab=100.00 E-value=2.4e-70 Score=540.56 Aligned_cols=328 Identities=64% Similarity=1.083 Sum_probs=302.8
Q ss_pred cccchhhHHHHHHhhhhhhhcccCCCCCCCCCCccchhhHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHH
Q 016696 54 GMLQSDVHICEIAERQSLANNLSDKGDAFRSKPQLDAMFLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWC 133 (384)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~ 133 (384)
-..+++++|++++.+++.............+++..+...++++|++|.++++++|+|||++++|||++.|+++++||+||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~c~~i~r~~s~sFyla~~lLP~~~R~ai~alYAf~ 85 (334)
T PLN02632 6 AAASSEEKVYEVVLKQAALVRKAARRSVRPRATSLSPALLEEAYDRCGEVCAEYAKTFYLGTLLMTPERRKAIWAIYVWC 85 (334)
T ss_pred CCCccHhHHHHHHHHHHHHHHHhcccccCCCCCCCCcccchHHHHHHHHHHhhcCchHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999998885543222334456667899999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHH
Q 016696 134 KRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPNDILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELY 213 (384)
Q Consensus 134 R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~ 213 (384)
|++|||+|+++.+.+++++|+||++.|++++.|.|.||+..+|.+++.+|+|+.++|.+||+||++|+...+|+|++||+
T Consensus 86 R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~~~~pv~~aL~~~~~~~~L~~~~~~~li~g~~~Dl~~~~~~t~~eL~ 165 (334)
T PLN02632 86 RRTDELVDGPNASHITPAALDRWEARLEDLFDGRPYDMLDAALADTVSKFPLDIQPFRDMIEGMRMDLVKSRYENFDELY 165 (334)
T ss_pred HHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999988877778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcc
Q 016696 214 LYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSR 293 (384)
Q Consensus 214 ~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~ 293 (384)
.|||+|||+||+|+++++|..+......+.+.+.|.++|+|+|||||||||+||+++||||||.|+|++||++++|++.+
T Consensus 166 ~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~A~~lG~AlQltNILRDv~eD~~~GRvYLP~e~L~~~Gv~~edl~~~ 245 (334)
T PLN02632 166 LYCYYVAGTVGLMSVPVMGIAPESKASTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQFGLTDEDIFAG 245 (334)
T ss_pred HHHHHhhHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeCCHHHHHHcCCCHHHHhcC
Confidence 99999999999999999997652222234567899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHHHHH
Q 016696 294 KVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAY 373 (384)
Q Consensus 294 ~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~ 373 (384)
..+++++.++.+++++|+.||++|+.++..||+++++++++++.+|+.||++|+++||++|++|+++++++|+|+++++|
T Consensus 246 ~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r~~v~~a~~~y~~iL~~i~~~~~~v~~~R~~l~~~~Kl~~~~~~~ 325 (334)
T PLN02632 246 KVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASRWPVWASLLLYRQILDAIEANDYDNFTKRAYVGKWKKLLALPLAY 325 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCC
Q 016696 374 YRAQSIST 381 (384)
Q Consensus 374 ~~~~~~~~ 381 (384)
++..-+++
T Consensus 326 ~~~~~~~~ 333 (334)
T PLN02632 326 ARALFPPS 333 (334)
T ss_pred HhhcccCC
Confidence 88765543
No 2
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=1.7e-63 Score=478.10 Aligned_cols=264 Identities=28% Similarity=0.465 Sum_probs=251.0
Q ss_pred HhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCC-CCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 016696 105 AEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPN-AFCVSPAALDRWEERLQDIFNGHPNDILDAALTDTVSKF 183 (384)
Q Consensus 105 r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~-~~~~~~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~ 183 (384)
+++++|||+|++|+|++.|+++++||||||++|||+|++. .+.++.++|+||++.+++++.|.|.|||..+|.++++++
T Consensus 2 ~~~~~sf~~a~~~lp~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g~~~~pv~~aL~~~~~~~ 81 (266)
T TIGR03464 2 VAHYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSGEPAAPVFVALARTVQRH 81 (266)
T ss_pred CCccCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHc
Confidence 4688999999999999999999999999999999999973 344567889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016696 184 NLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRD 263 (384)
Q Consensus 184 ~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRD 263 (384)
+|+.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++++|..+.. ..+.|.++|+|+|+||||||
T Consensus 82 ~l~~~~~~~li~~~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~~~~~------~~~~A~~lG~AlQltniLRD 155 (266)
T TIGR03464 82 GLPIEPFLDLLDAFRQDVVVTRYATWAELLDYCRYSANPVGRLVLDLYGASDPE------NVALSDAICTALQLINFWQD 155 (266)
T ss_pred CCChHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCCCChh------HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999875422 35789999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHH
Q 016696 264 VGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKIL 343 (384)
Q Consensus 264 v~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL 343 (384)
|+||+++||||||.|+|++||++++|++++..++++++++.+++.+|+.||++|+.++..+|+++++++++++.+|+.||
T Consensus 156 l~eD~~~gR~YLP~~~l~~~Gv~~edl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~~~~y~~iL 235 (266)
T TIGR03464 156 VGVDYRKGRVYLPRDDLARFGVSEEDLAAGRATPALRELMAFEVSRTRALLDRGAPLAARVDGRLGLELALIVRGGLRIL 235 (266)
T ss_pred hHHHHhcCCccCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCcccChHHHHHHHHHHHH
Q 016696 344 DAIQDNDYDNLTKRAYVGNIKKLFLVRQAYY 374 (384)
Q Consensus 344 ~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~~ 374 (384)
++|+++||++|++|+++++++|+|++|+++|
T Consensus 236 ~~l~~~~~~~~~~r~~~~~~~kl~~~~~a~~ 266 (266)
T TIGR03464 236 EKIERQGYDVLRERPKLGKFDWAGLLLRALW 266 (266)
T ss_pred HHHHHcCCCCCCCCCcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999875
No 3
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=100.00 E-value=3.9e-63 Score=475.49 Aligned_cols=265 Identities=35% Similarity=0.618 Sum_probs=254.2
Q ss_pred HhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 016696 105 AEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPNDILDAALTDTVSKFN 184 (384)
Q Consensus 105 r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~ 184 (384)
+++|+|||++++|+|++.|+++++||+|||++|+|+|+..++..+.++|+||++.+++++.|.|.|||..+|.+++++++
T Consensus 2 ~~~s~sF~~a~~~lp~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~g~~~~pv~~al~~~~~~~~ 81 (266)
T TIGR03465 2 AASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGAPSHPVARALADPARRFD 81 (266)
T ss_pred CCCcCcHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999766667889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH
Q 016696 185 LHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV 264 (384)
Q Consensus 185 L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv 264 (384)
++.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|..++ ...+.|.++|.|+|+||||||+
T Consensus 82 l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~~~~------~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 82 LPQEDFLEVIDGMEMDLEQTRYPDFAELDLYCDRVAGAVGRLSARIFGATDA------RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986432 3578999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHH
Q 016696 265 GEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILD 344 (384)
Q Consensus 265 ~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~ 344 (384)
++|+.+||||||.|+|.+||++++++.+|..++++++++.+++++|+.||++|+.++..+|++.++++++++.+|+.||+
T Consensus 156 ~eD~~~gR~ylP~~~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~~~~~~~~~~iL~ 235 (266)
T TIGR03465 156 GEDARRGRIYLPAEELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAARAMAAIYRALLD 235 (266)
T ss_pred HHHHhCCCeecCHHHHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCcccChHHHHHHHHHHHHH
Q 016696 345 AIQDNDYDNLTKRAYVGNIKKLFLVRQAYYR 375 (384)
Q Consensus 345 ~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~~~ 375 (384)
+|+++||++|++|+++++++|+|++|+++++
T Consensus 236 ~i~~~~~~~~~~r~~~~~~~k~~~~~~~~~~ 266 (266)
T TIGR03465 236 EIEADGFQVLRQRVSLTPLRKLWIALRTWLR 266 (266)
T ss_pred HHHHCCCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998753
No 4
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=100.00 E-value=1.3e-61 Score=464.54 Aligned_cols=263 Identities=41% Similarity=0.700 Sum_probs=250.2
Q ss_pred HHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCC-CChHHHHHHHHHHHHHHHcCC-CCCHHHHH
Q 016696 98 ERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAF-CVSPAALDRWEERLQDIFNGH-PNDILDAA 175 (384)
Q Consensus 98 ~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~-~~~~~rL~~Wr~~L~~~~~g~-p~~Pv~~a 175 (384)
.+|.++++++|+|||++++|+|++.|+++++||||||++|||+|++..+ ..+.++|+||++.|++++.|. +.|||..+
T Consensus 1 ~~c~~~~~~~~~sf~~a~~~lp~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~pv~~a 80 (265)
T cd00683 1 AYCRAILRKGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGGAPTHPVLRA 80 (265)
T ss_pred CHHHHHHHHhCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcCCCCCChHHHH
Confidence 3799999999999999999999999999999999999999999998876 667899999999999999854 67999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHH
Q 016696 176 LTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGN 255 (384)
Q Consensus 176 L~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~Al 255 (384)
|.+++++++++.++|.+||+||++|+...+|+|++||+.|||+|||+||+|+++++|.... +...+.|.++|+|+
T Consensus 81 l~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~~~-----~~~~~~A~~lG~Al 155 (265)
T cd00683 81 LADLARRYGIPREPFRDLLAGMAMDLDKRRYETLDELDEYCYYVAGVVGLMLLRVFGASSD-----EAALERARALGLAL 155 (265)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986211 23578999999999
Q ss_pred HHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHH
Q 016696 256 QLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTV 335 (384)
Q Consensus 256 QLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~ 335 (384)
|+||||||+++|+++||||||.|+|.+||++++++.++..++++++++.+++++|+.||.+|+.++..+|++.+++++.+
T Consensus 156 qltnilRdv~eD~~~gR~YlP~d~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~~~~~~~ 235 (265)
T cd00683 156 QLTNILRDVGEDARRGRIYLPREELARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSRFCVRAA 235 (265)
T ss_pred HHHHHHHHHHHHHccCCCcCCHHHHHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcccChHHH
Q 016696 336 LILYQKILDAIQDNDYDNLTKRAYVGNIKK 365 (384)
Q Consensus 336 ~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~k 365 (384)
+.+|+.||++|+++||++|++|+++++++|
T Consensus 236 ~~~y~~il~~i~~~~~~~~~~r~~~~~~~k 265 (265)
T cd00683 236 AMLYRTILDEIEARGYDVLSVRVRVPKARK 265 (265)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999998875
No 5
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=100.00 E-value=2.2e-56 Score=431.10 Aligned_cols=282 Identities=38% Similarity=0.676 Sum_probs=260.0
Q ss_pred hhHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCC--
Q 016696 91 MFLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHP-- 168 (384)
Q Consensus 91 ~~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p-- 168 (384)
.....++++|.++++++|+|||++++|+|+++|++++++|+|||++|||+|++..+......+.+|+..+...+.|.|
T Consensus 4 ~~~~~~~~~c~~i~~~~srtf~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 83 (288)
T COG1562 4 MEIMEALDYCLDILRETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDGVSDPDLPAEILLAWRRELDGDFSGQPAS 83 (288)
T ss_pred cchhHHHHHHHHHHHHhCcchHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhccccCCCcc
Confidence 345788999999999999999999999999999999999999999999999998874434445555556666667754
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHH
Q 016696 169 NDILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAA 248 (384)
Q Consensus 169 ~~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A 248 (384)
.|||..+|.+++.+|+++.++|.+|++||++|+...+|.+++||+.||++|||+||+|++.|++... . ....+.|
T Consensus 84 ~~pv~~al~~~~~~~~~~~~~~~~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~l~~~Il~~~~-~----~~~~~~a 158 (288)
T COG1562 84 DHPVLAALVEVARRFGLPREAFPALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGLLLARILGPDK-D----AATRAYA 158 (288)
T ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHhHHHHHHHHHHHhCccc-c----hhhHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999753 1 1235567
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 249 LYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 249 ~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
..+|.|+|+||||||++||..+||+|||.|+|.+||++.+|+.+|.++++++.+|..++.+|+.|+..|+.++..||.++
T Consensus 159 ~~lG~A~QlvNilRdv~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~~~~~~~~~~~~~~ar~~~~~a~~~~~~lp~~~ 238 (288)
T COG1562 159 RGLGLALQLVNILRDVGEDRRRGRVYLPAEELARFGVSEADLLAGRVDDAFRELMRFEADRARDHLAEARRGLPALPGRA 238 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCcccCCHHHHHHhCCCHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhCCccc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHHHHHHHhc
Q 016696 329 RWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQ 377 (384)
Q Consensus 329 r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~~~~~ 377 (384)
++++..+..+|..++++|++++++||+++..+++++|+|++++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~i~a~~~~vl~~~~~l~~~~~~~~~~~~~~~~~ 287 (288)
T COG1562 239 QLAVLAAALLYAYLLDAIEADPADVLSQRAVLPKLRKLWLLLKAWLRGF 287 (288)
T ss_pred cchhhHHHHHHHHHHHHHHccchhhhccCcccCcchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999998764
No 6
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=100.00 E-value=1.8e-57 Score=435.42 Aligned_cols=257 Identities=37% Similarity=0.666 Sum_probs=225.4
Q ss_pred HHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcC------CCCCHHHHHHH
Q 016696 104 CAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNG------HPNDILDAALT 177 (384)
Q Consensus 104 ~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g------~p~~Pv~~aL~ 177 (384)
+|++|+|||++++|+|++.|+++++||||||++|+|+|+++.+..++++|+||++.++.++.+ .+.|||+.+|.
T Consensus 1 lr~~~~sf~~a~~~lP~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~ 80 (267)
T PF00494_consen 1 LRKHSRSFYLASLLLPKEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALA 80 (267)
T ss_dssp -HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHH
T ss_pred CCCCCccHHHHHHHCCHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHH
Confidence 588999999999999999999999999999999999999998777889999999999999942 35699999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHH
Q 016696 178 DTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQL 257 (384)
Q Consensus 178 ~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQL 257 (384)
+++++++++.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|++++++..... +.+.++|.++|.|+|+
T Consensus 81 ~~~~~~~l~~~~l~~li~~~~~dl~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~~----~~~~~~a~~lG~alql 156 (267)
T PF00494_consen 81 DLVRRYGLPREPLLELIDGMEMDLEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDPD----EAARDAARALGRALQL 156 (267)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHCTT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTSH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999984221 3468999999999999
Q ss_pred HHHHHhHHHH-HhcCCCCCCHHHHHhcCCChhhhhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccCcHHHHH
Q 016696 258 TNILRDVGED-ASRGRIYLPQDELAKFGLRDEDIFSRK-VSDEWREFMKEQITRARYFYKLAEEGASEL-DKASRWPVWT 334 (384)
Q Consensus 258 tNILRDv~eD-~~~GR~YLP~d~L~~~Gvs~edl~~~~-~~~~~~~li~~~~~~A~~~l~~A~~~~~~L-p~~~r~~v~~ 334 (384)
||||||+++| +++||||||.|+|.+||++++|+.++. .+++++.++.+++.+|+.+|++|+.++..+ |+.+++++++
T Consensus 157 ~nilRd~~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~~~~~~~~~ 236 (267)
T PF00494_consen 157 TNILRDIPEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPPRARPAVAA 236 (267)
T ss_dssp HHHHHTHHHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--TTHHHHHHH
T ss_pred HHHHHHhHHHHHhcccccCCchhHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhhhHHHHH
Confidence 9999999999 899999999999999999999999886 888899999999999999999999999999 7778988999
Q ss_pred HHHHHHHHHHHHHhCCCC-CCCCCcccChHH
Q 016696 335 VLILYQKILDAIQDNDYD-NLTKRAYVGNIK 364 (384)
Q Consensus 335 ~~~ly~~iL~~Ie~~~y~-vf~~r~~v~~~~ 364 (384)
++.+|..+|++|+++||+ +|++|+++++|+
T Consensus 237 ~~~~~~~~l~~l~~~~~~~v~~~r~~~~~~r 267 (267)
T PF00494_consen 237 AAALYRAILDKLERNGYDPVFQRRVKVSKWR 267 (267)
T ss_dssp HHHHHHHHHHHHHHTTT--GSSS-----HH-
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCcCCCCC
Confidence 999999999999999999 889999999875
No 7
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=100.00 E-value=1e-47 Score=378.22 Aligned_cols=270 Identities=16% Similarity=0.134 Sum_probs=221.7
Q ss_pred HHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcC------CCCC
Q 016696 97 YERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNG------HPND 170 (384)
Q Consensus 97 ~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g------~p~~ 170 (384)
.++|.++++++|+|||+++++||+++|++++++|+|||.+|||+|++..+ .+.++.+|++..+.+..+ .+ |
T Consensus 2 ~~~C~~~l~~~SrSF~~ai~~Lp~~lR~aV~~~Yl~cR~~DdIeDd~~~~--~~~kl~~l~~~~~~l~~~~~~~~~~~-~ 78 (336)
T TIGR01559 2 LGFCYELLNLTSRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDMTIS--VDKKIPLLRDFHEKIYDPDWRFTESD-N 78 (336)
T ss_pred hHHHHHHHhhcCccHHHHHHHcCHHHHHHHHHHHHHHHhccccccCCCCC--HHHHHHHHHHHHHHHhccCcccCCCC-C
Confidence 57899999999999999999999999999999999999999999987754 246776666655555442 21 4
Q ss_pred HHHHH----HHHHHHhcCCChHHHHHHH--------HHHHhhccCCCC--CCHHHHHHHHHHhchHHHHHHHhhhCCCCC
Q 016696 171 ILDAA----LTDTVSKFNLHIKPFRDMI--------KGMRMDTEKCRY--ANFQELYLYCYYAGGTVGLMSVPVMGMDPD 236 (384)
Q Consensus 171 Pv~~a----L~~~v~~~~L~~~~~~~lI--------~g~~~DL~~~~~--~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~ 236 (384)
|...+ +...+..+..-.+++.++| +||++|+.+.+| +|++||+.|||+|||+||+|++++++....
T Consensus 79 ~~~~~L~~~~~~v~~~~~~l~~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~~~~ 158 (336)
T TIGR01559 79 EKDRQVLDDFPVVSLEFLKLKPKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGF 158 (336)
T ss_pred hhhHHHHHhchHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhhcCC
Confidence 44433 3334444433334466655 999999999999 999999999999999999999999965211
Q ss_pred CchhHHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016696 237 SSASAQSIYNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKL 316 (384)
Q Consensus 237 ~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~ 316 (384)
......+..+.|.+||.|||+||||||++||+.+||||||+|+|.+||++.+|+..+++++++..++.+++.+|+.||+.
T Consensus 159 ~~~~~~~~~~~A~~lG~aLQlTNIlRDv~ED~~~GR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~lv~~A~~~~~~ 238 (336)
T TIGR01559 159 EDPSLGESEALSNSMGLFLQKTNIIRDYLEDINEGRMFWPREIWSKYAKKLGDFKKPENSDKALQCLNELVTNALHHATD 238 (336)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHhHHhCCCCCCCHHHHHHcCCCHHHhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 11011123678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccc-CcHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHH
Q 016696 317 AEEGASELDKA-SRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVR 370 (384)
Q Consensus 317 A~~~~~~Lp~~-~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~ 370 (384)
|..++..|+.. .+..+.++..++...|..+.+ +.++|++.+++++..-..++.
T Consensus 239 al~yl~~l~~~~~~~fcaip~~mAi~TL~~~~~-n~~~~~~~VKi~r~~~~~~~~ 292 (336)
T TIGR01559 239 CLTYLSRLRDQSIFNFCAIPQVMAIATLALCYN-NPQVFQGNVKIRKGTTVKLIL 292 (336)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhc-ChhhcCCCceecHHHHHHHHH
Confidence 99999999654 355788899999999999964 557999999998776555553
No 8
>KOG4411 consensus Phytoene/squalene synthetase [Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=285.28 Aligned_cols=261 Identities=20% Similarity=0.243 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhh-hcCCCCCCCChHHHHHHHHHHHHHHHcCCC----
Q 016696 94 DEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDE-LVDGPNAFCVSPAALDRWEERLQDIFNGHP---- 168 (384)
Q Consensus 94 ~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~Dd-ivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p---- 168 (384)
..|.. |.+.++.++...|++.+.+|.+.|.++++|.|||.|+.. .+|...++.++.+||+||+|+|+.+|.-.|
T Consensus 9 ~~A~s-c~~~vr~ydy~~ylc~l~lp~e~r~aafaLrAfNVE~ar~~~d~~~~p~ia~mRL~fW~daIdk~y~~~p~~v~ 87 (292)
T KOG4411|consen 9 RSALS-CVQQVRNYDYHHYLCLLELPTEMRKAAFALRAFNVELARIKVDTRKGPAIAMMRLQFWKDAIDKIYGISPLPVP 87 (292)
T ss_pred hhHHH-HHHHHHhhhHHHHHHHHhCcHHHHHHHHHHHHhhHHHHHHhhccccCcHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 44555 999999999999999999999999999999999999999 566677788899999999999999997654
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHH
Q 016696 169 NDILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAA 248 (384)
Q Consensus 169 ~~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A 248 (384)
+|||+.+|..++..+++++.++.+++++++.|.....|+++.||++|.+.+-|++.++.++..|..... ++++|
T Consensus 88 ~qPva~aL~~~~~~~~~nk~~L~rlV~aR~r~~~d~~fesI~eLeeY~e~TissLL~l~l~agg~~~~~------AdhaA 161 (292)
T KOG4411|consen 88 RQPVAIALCSFAAGHNANKDMLLRLVEARQRTIGDRQFESINELEEYGESTISSLLCLQLDAGGKVLPM------ADHAA 161 (292)
T ss_pred CcHHHHHHHHHHhccccCHHHHHHHHHHhhcCCcccchHHHHHHHHHHHhHHHHHHHHHHHhcCccccc------hHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999998875433 48999
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhh-hcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 249 LYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDI-FSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 249 ~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl-~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
.|+|.|.+++|+||.++...++|-.|||.|.|..||++++|+ ......+++..++.+++..|+.|+..|++.++.+|++
T Consensus 162 shlGkA~gia~llrs~p~~~~r~~~~iPadv~~lhGvtq~~il~~k~~~~g~~~~~fd~as~an~hL~~AR~l~~kVP~~ 241 (292)
T KOG4411|consen 162 SHLGKAYGIANLLRSTPPLLARGIVLIPADVMSLHGVTQLDILYKKKKLDGMVGMTFDLASEANRHLIDARSLIEKVPKA 241 (292)
T ss_pred HHHhHHHHHHHHHHhccHHHhCCCccccHHHHHHcCCCHHHHHhhccchhhhhhHHHHHHHHHHHHHHHHHhHhhhCCHH
Confidence 999999999999999999999999999999999999999775 5566788999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCCCC-CcccCh
Q 016696 328 SRWPVWTVLILYQKILDAIQDNDYDNLTK-RAYVGN 362 (384)
Q Consensus 328 ~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~-r~~v~~ 362 (384)
.| |++++.+....||+.|++++|++|++ .++..+
T Consensus 242 vr-p~ll~tv~td~~l~~l~k~nfdi~~p~~~~R~~ 276 (292)
T KOG4411|consen 242 VR-PALLATVTTDYILKTLEKNNFDIYSPHLQRRNP 276 (292)
T ss_pred HH-HHHHHhhhHHHHHHHHHHccccccCHhhhcCCc
Confidence 99 78899999999999999999999987 444433
No 9
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism]
Probab=99.94 E-value=6.2e-26 Score=218.26 Aligned_cols=315 Identities=27% Similarity=0.327 Sum_probs=276.2
Q ss_pred ccchhhHHHHHHhhhhhhhcccCCCCCC--CC-CCc-----cchhhHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHH
Q 016696 55 MLQSDVHICEIAERQSLANNLSDKGDAF--RS-KPQ-----LDAMFLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAI 126 (384)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-----~~~~~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al 126 (384)
-++++..|+.++.||...++..-+-.++ +. .++ ..-..|.++|+ +++.+..+.++.++..+-.+.++++
T Consensus 82 ~~d~kvpil~~fhk~i~~~~w~f~~s~~k~r~~l~qf~~v~~ef~~L~e~Yq---eviaeitk~mg~Gma~~~~~~v~ti 158 (413)
T KOG1459|consen 82 PLDKKVPILRVFHKQIYLVDWQFRESSPKDRQLLPQFVVVSGEFLNLGEGYQ---EVIAEITKRMGLGMALFIPEEVETI 158 (413)
T ss_pred cccccccHHHHHHHHHhhcCceecCCChhhhhhccccccchHHHHHhhHHHH---HHHHHHHHHHhchHHHhhHHHHhHH
Confidence 3567889999999999998874321111 11 122 23355777776 7888888899999998888889999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCChHHHH-HHHHHHHhh-ccCC
Q 016696 127 WAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPNDILDAALTDTVSKFNLHIKPFR-DMIKGMRMD-TEKC 204 (384)
Q Consensus 127 ~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~L~~~~~~-~lI~g~~~D-L~~~ 204 (384)
|..|.|||.++.+|+.+....+..++|+.|....+++++|.|-...-..+.+.+.+...+.++|- ++|.|+.+| |.+.
T Consensus 159 ~d~d~yChyvagLVg~glsrlf~~s~le~~~~~~e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~ 238 (413)
T KOG1459|consen 159 WDYDVYCHYVAGLVGIGLSRLFTASKLEDLLARLEQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDF 238 (413)
T ss_pred HHHHHHHHHHHHhhCCchHhhhhHHHHhhhhhhHHHHhcccchHHHHhHHHHHHHhccccCCccChHHHHHHHHHHHHhh
Confidence 99999999999999999988888999999999999999998877667788888999999999988 999999999 9999
Q ss_pred CCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcC
Q 016696 205 RYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFG 284 (384)
Q Consensus 205 ~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~G 284 (384)
+|++.+||..||+..++|+|+|..+.+ +.+-+....+++.+.+...|++.+.|++|++..+|+.+|++|||+ |
T Consensus 239 ~~~en~dl~l~Cln~m~tnaL~hv~d~-l~yls~l~~qsvfnfcaipqimai~Tlal~~nn~dvfrG~Vklrk------G 311 (413)
T KOG1459|consen 239 RYPENDDLALQCLNEMVTNALMHVPDV-LTYLSKLRTQSVFNFCAIPQIMAIATLALCYNNEDVFRGNVKLRK------G 311 (413)
T ss_pred hCccchhHHHHHHHHHHHHHhhccHHH-HHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCHhHhccceeecC------C
Confidence 999999999999999999999999877 444444556789999999999999999999999999999999999 9
Q ss_pred CChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHH
Q 016696 285 LRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIK 364 (384)
Q Consensus 285 vs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~ 364 (384)
++.+++++++..+++++++..+..+++..++++....-.|....+++++..+..|+. .+.+..+.|++|++|+++....
T Consensus 312 l~~~~I~~~k~~~~v~~~f~~y~~~i~~k~d~~dpnflklsask~~qv~esl~~~~~-~~~il~n~~~~f~k~~~v~~V~ 390 (413)
T KOG1459|consen 312 LAVELILASKTMDKVRNIFYMYLRDIRMKFDEADPNFLKLSASKTEQVWESLLLYRR-PDEILANRYNNFTKRIYVGFVK 390 (413)
T ss_pred chHHHHHhcccHHHHHHHHHHHHHHHHhhCCccCCCchhhhhhhHHHHHHHHHHhhc-cccccccccccccchhHHHHHH
Confidence 999999999999999999999999999999999988878887778899999888877 8999999999999999999999
Q ss_pred HHHHHHHHHHHhcccC
Q 016696 365 KLFLVRQAYYRAQSIS 380 (384)
Q Consensus 365 kl~~l~~a~~~~~~~~ 380 (384)
++..+..+|.++.+.-
T Consensus 391 ~i~al~~ay~~~v~~i 406 (413)
T KOG1459|consen 391 KIAALPLAYAKSVSKI 406 (413)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 10
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=99.87 E-value=1.5e-21 Score=183.15 Aligned_cols=205 Identities=28% Similarity=0.343 Sum_probs=163.0
Q ss_pred chhHHHhcCCh----------hhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHH-HHHHHHHHHcCCCCCHHHHHHHH
Q 016696 110 TYYLGTLLLTK----------ERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDR-WEERLQDIFNGHPNDILDAALTD 178 (384)
Q Consensus 110 sfyla~~~lP~----------~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~-Wr~~L~~~~~g~p~~Pv~~aL~~ 178 (384)
+|+++++++|+ ..+.++..||+|++..|||+|+.......+....| |.+.+. +..| .+|+..++..
T Consensus 1 ~r~~~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a-i~~g--d~l~~~a~~~ 77 (236)
T cd00867 1 SRPLLVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA-ILAG--DYLLARAFQL 77 (236)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH-HHHH--HHHHHHHHHH
Confidence 47888888998 99999999999999999999998776555666777 765543 3333 4678888887
Q ss_pred HHH-----hcCCChHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHH-hchHHHHHHHhhhCCCCCCchhHHhHHHHHHH
Q 016696 179 TVS-----KFNLHIKPFRDMIKGMRMDTEKCR--YANFQELYLYCYY-AGGTVGLMSVPVMGMDPDSSASAQSIYNAALY 250 (384)
Q Consensus 179 ~v~-----~~~L~~~~~~~lI~g~~~DL~~~~--~~t~~dL~~Yc~~-vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~ 250 (384)
+.+ .+.+..+.+.++++|+..|+...+ +.|++++..||++ ||+.+|.++..++..........+.+.+.+.+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (236)
T cd00867 78 LARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGADDEQAEALKDYGRA 157 (236)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 776 567788999999999999998876 9999999999999 99999998887765443332334567889999
Q ss_pred HHHHHHHHHHHHhHHHHH----------hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016696 251 LGIGNQLTNILRDVGEDA----------SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEG 320 (384)
Q Consensus 251 LG~AlQLtNILRDv~eD~----------~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~ 320 (384)
+|+|+|++|+++|+.+|. ++||+|||.+.+ .+.+.++++.++..+...
T Consensus 158 lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~----------------------~~~~~~~~~~~~~~~~~~ 215 (236)
T cd00867 158 LGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA----------------------RERAAEYAEEAYAALEAL 215 (236)
T ss_pred HHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH----------------------HHHHHHHHHHHHHHHHhC
Confidence 999999999999998877 899999999987 556777788888888877
Q ss_pred hhhccccCcHHHHHHHHHH
Q 016696 321 ASELDKASRWPVWTVLILY 339 (384)
Q Consensus 321 ~~~Lp~~~r~~v~~~~~ly 339 (384)
....|....++..+...+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd00867 216 PPSLPRARRALIALADFLY 234 (236)
T ss_pred CCCchHHHHHHHHHHHHHH
Confidence 7666544444444444444
No 11
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.82 E-value=8.6e-20 Score=167.35 Aligned_cols=217 Identities=22% Similarity=0.215 Sum_probs=175.8
Q ss_pred chhHHHhcCCh--hhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----
Q 016696 110 TYYLGTLLLTK--ERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPNDILDAALTDTVSK----- 182 (384)
Q Consensus 110 sfyla~~~lP~--~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~----- 182 (384)
+|++++.+.|. +.|..+..+|+|++.+|||.|+.......+....+|...-.....+...+++..++..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (243)
T cd00385 1 FRPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEA 80 (243)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 47889999999 99999999999999999999998766555556666611100111111235677777777765
Q ss_pred cCCChHHHHHHHHHHHhhccCCC--CCCHHHHHHHHHHh-chHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHH
Q 016696 183 FNLHIKPFRDMIKGMRMDTEKCR--YANFQELYLYCYYA-GGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTN 259 (384)
Q Consensus 183 ~~L~~~~~~~lI~g~~~DL~~~~--~~t~~dL~~Yc~~v-AGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtN 259 (384)
+.+..+.+.++++|+..|+.... ++|++|+..|++.+ ++.++.++...++.........+.+...+.++|.++|++|
T Consensus 81 ~~~~~~~~~~~~~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~n 160 (243)
T cd00385 81 LEILAEALLDLLEGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTN 160 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888999999999998766 99999999999999 8888888877766532222334567889999999999999
Q ss_pred HHHhHHHHHhc--CCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 260 ILRDVGEDASR--GRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 260 ILRDv~eD~~~--GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
.++|+..|... |++++|..++.++|++.+++..+..++.+.+++..+...++..+.+..+....+|.
T Consensus 161 Dl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (243)
T cd00385 161 DLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILSLPD 229 (243)
T ss_pred HHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 99999999987 89999999999999999999988899999999999999999999999888777763
No 12
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism]
Probab=99.74 E-value=9.8e-18 Score=161.93 Aligned_cols=266 Identities=17% Similarity=0.156 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCC-hHHHHHHHHHHHHHH---HcCC-CC
Q 016696 95 EAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCV-SPAALDRWEERLQDI---FNGH-PN 169 (384)
Q Consensus 95 ~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~-~~~rL~~Wr~~L~~~---~~g~-p~ 169 (384)
.-+..|.+.+..++++|-....-++.+.|.+++.+|...|.+|++.|+.+.+.. +..-|.-+...+... |.++ |.
T Consensus 31 ~~~~~Cy~~l~~tsrsfa~Vi~~l~~elRNav~ifylVlraLdtvedd~sI~~d~kvpil~~fhk~i~~~~w~f~~s~~k 110 (413)
T KOG1459|consen 31 PLLSPCYNLLNLTSRSFAAVIQELSSELRNAVCIFYLVLRALDTVEDDMSIPLDKKVPILRVFHKQIYLVDWQFRESSPK 110 (413)
T ss_pred hHHHHHHHHHHhhcchHHHHHHhhCHHHhhhhheeeeehhhhccCCCCCcccccccccHHHHHHHHHhhcCceecCCChh
Confidence 568899999999999999999999999999999999999999999999876543 233444444444332 3332 31
Q ss_pred --------CHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchh
Q 016696 170 --------DILDAALTDTVSKFN-LHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSAS 240 (384)
Q Consensus 170 --------~Pv~~aL~~~v~~~~-L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~ 240 (384)
|-|..+|..+-..|. .-.+.-++|-.||..-+.. +.+|..|++.||.+|||-||.-.+.++....-. ..
T Consensus 111 ~r~~l~qf~~v~~ef~~L~e~Yqeviaeitk~mg~Gma~~~~~-~v~ti~d~d~yChyvagLVg~glsrlf~~s~le-~~ 188 (413)
T KOG1459|consen 111 DRQLLPQFVVVSGEFLNLGEGYQEVIAEITKRMGLGMALFIPE-EVETIWDYDVYCHYVAGLVGIGLSRLFTASKLE-DL 188 (413)
T ss_pred hhhhccccccchHHHHHhhHHHHHHHHHHHHHHhchHHHhhHH-HHhHHHHHHHHHHHHHHhhCCchHhhhhHHHHh-hh
Confidence 223344444444443 1124456788888877765 489999999999999999998888877543211 13
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016696 241 AQSIYNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEG 320 (384)
Q Consensus 241 ~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~ 320 (384)
..+..+.++.+|..+|.|||+||..||...||-++|.|++.++--.-+|+...++++..-..+.++++.|..|-..+..+
T Consensus 189 ~~~~e~l~ns~glfLqktnIirdy~ed~~d~r~Fwp~eIwg~y~d~L~d~~~~en~dl~l~Cln~m~tnaL~hv~d~l~y 268 (413)
T KOG1459|consen 189 LARLEQLSNSMGLFLQKTNIIRDYLEDPVDGRPFWPREIWGKYMDKLKDFRYPENDDLALQCLNEMVTNALMHVPDVLTY 268 (413)
T ss_pred hhhHHHHhcccchHHHHhHHHHHHHhccccCCccChHHHHHHHHHHHHhhhCccchhHHHHHHHHHHHHHhhccHHHHHH
Confidence 34456789999999999999999999999999999999999985446888888899999999999999999999999998
Q ss_pred hhhccccCcH-HHHHHHHHHHHHHHHHHhCCCCCCCCCcccChH
Q 016696 321 ASELDKASRW-PVWTVLILYQKILDAIQDNDYDNLTKRAYVGNI 363 (384)
Q Consensus 321 ~~~Lp~~~r~-~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~ 363 (384)
+..+..++-+ .+.++..+....|... -+|-++|.+++++++.
T Consensus 269 ls~l~~qsvfnfcaipqimai~Tlal~-~nn~dvfrG~VklrkG 311 (413)
T KOG1459|consen 269 LSKLRTQSVFNFCAIPQIMAIATLALC-YNNEDVFRGNVKLRKG 311 (413)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHH-hcCHhHhccceeecCC
Confidence 8888766533 5667777777777654 5777999999999754
No 13
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=96.50 E-value=0.39 Score=45.90 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhccCCC--CCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhHH
Q 016696 189 PFRDMIKGMRMDTEKCR--YANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDVG 265 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~~--~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~ 265 (384)
...+++.|.-.|+.... -.|++++..-+..-.|+...++..+.+.- ..+....+.+.+.+.++|.++|+.|=+.|+-
T Consensus 116 ~~~~~~~GQ~~d~~~~~~~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~ 195 (259)
T cd00685 116 AILELVEGQLLDLLSEYDTDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLF 195 (259)
T ss_pred HHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45689999999987543 47899998888888888766655543321 1122234568889999999999998776663
Q ss_pred HHHh-cCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 266 EDAS-RGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 266 eD~~-~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
.+-. .|+- ..+|+..|+.+=-+.-.+ -+.+..+.+++...+..+|...
T Consensus 196 ~~~~~~gK~------------~~~Di~~gk~T~~~~~~l---~~~~~~~~~~a~~~l~~~~~~~ 244 (259)
T cd00685 196 GDPETLGKP------------VGSDLREGKCTLPVLLAL---RELAREYEEKALEALKALPESP 244 (259)
T ss_pred CChHHHCCC------------cchHHHcCCchHHHHHHH---HHHHHHHHHHHHHHHHcCCCcH
Confidence 3211 1110 124555555442222122 5667788888888888887543
No 14
>PLN02890 geranyl diphosphate synthase
Probab=95.94 E-value=0.69 Score=47.67 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
...++++|...|+.. ..-.|++++..-.++=.|++...++.+-+.- .......+.+...+.++|.|+|+.+=+-|+
T Consensus 235 a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~ 314 (422)
T PLN02890 235 AVEHLVTGETMQITSSREQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFT 314 (422)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346888999888854 2345788877777777777765555432221 111222345678899999999999888775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChhhhhc-ccCC-HHHHHH---------HHHHHHHHHHHHHHHHHhhhh
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDEDIFS-RKVS-DEWREF---------MKEQITRARYFYKLAEEGASE 323 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl~~-~~~~-~~~~~l---------i~~~~~~A~~~l~~A~~~~~~ 323 (384)
+.|+..|.+-+|.=..-+..-....++. +..+ +.+..+ +.+-.+.|+.|.++|...+..
T Consensus 315 g~~~~~GK~~g~DL~eGk~TlPvl~al~~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~ 394 (422)
T PLN02890 315 GTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIES 394 (422)
T ss_pred CChhhhCCCchhhHhcCCccHHHHHHHhcCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999998887543321101112221 2211 222222 334445688888999998888
Q ss_pred ccccC
Q 016696 324 LDKAS 328 (384)
Q Consensus 324 Lp~~~ 328 (384)
+|...
T Consensus 395 lp~s~ 399 (422)
T PLN02890 395 LPETD 399 (422)
T ss_pred CCCCc
Confidence 88654
No 15
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=95.79 E-value=0.59 Score=46.37 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHh---
Q 016696 190 FRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRD--- 263 (384)
Q Consensus 190 ~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRD--- 263 (384)
..+++.|...|+.. ..-.|++++..-.+.=.|++...++.+-..- ..+....+.+.+.+.++|.|+|+.+=+.|
T Consensus 142 ~~~~~~Gq~~~~~~~~~~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~ 221 (322)
T TIGR02749 142 ITDFAEGEIKQGLNQFDSDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTG 221 (322)
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34678887777643 2234777777666665666655454432211 11122345678899999999999987776
Q ss_pred --------HHHHHhcCCCCCCHHHHHhcCCChhhhhcc-cC-CHHHHHH---------HHHHHHHHHHHHHHHHHhhhhc
Q 016696 264 --------VGEDASRGRIYLPQDELAKFGLRDEDIFSR-KV-SDEWREF---------MKEQITRARYFYKLAEEGASEL 324 (384)
Q Consensus 264 --------v~eD~~~GR~YLP~d~L~~~Gvs~edl~~~-~~-~~~~~~l---------i~~~~~~A~~~l~~A~~~~~~L 324 (384)
++.|+..|.+-+|.=..-+..-....++.. .. .+.+..+ +...-+.++.+.++|.+.+..+
T Consensus 222 ~~~~~GK~~g~Dl~~Gk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~l 301 (322)
T TIGR02749 222 STEQLGKPAGSDLMKGNLTAPVLFALEEEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFL 301 (322)
T ss_pred ChHhhCCChhHHHhCCCchHHHHHHHhcChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999988864332221111122211 11 1112222 2334445677888888888878
Q ss_pred ccc
Q 016696 325 DKA 327 (384)
Q Consensus 325 p~~ 327 (384)
|..
T Consensus 302 p~~ 304 (322)
T TIGR02749 302 PPS 304 (322)
T ss_pred CCC
Confidence 763
No 16
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=95.51 E-value=2.5 Score=42.01 Aligned_cols=137 Identities=15% Similarity=0.077 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 190 FRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 190 ~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
...+.+|...|+.. ..-.|++++..-++.=.|++..+++.+.+.- .......+.+...+.++|.|+|+.+=+-|+
T Consensus 139 ~~~~~~Gq~~d~~~~~~~~~s~~~y~~~i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~ 218 (323)
T PRK10888 139 VNVIAEGEVLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 35678888888743 3346888888888888888877776644321 111223345678999999999999877665
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChh--h----hhcccC-CHHHHHH---------HHHHHHHHHHHHHHHHH
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDE--D----IFSRKV-SDEWREF---------MKEQITRARYFYKLAEE 319 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~e--d----l~~~~~-~~~~~~l---------i~~~~~~A~~~l~~A~~ 319 (384)
+.|+..|++-+|.=..-+. .+++ . +..... .+.+..+ +.+..+.|+.|.++|.+
T Consensus 219 ~~~~~GK~~g~Dl~~gk~Tlp~l~al~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~ 297 (323)
T PRK10888 219 DGETLGKNVGDDLNEGKPTLPLLHAMHH-GTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIA 297 (323)
T ss_pred ChHhhCCCchhhhhcCCchHHHHHHHHh-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 6788999998885433222 1221 1 111111 1222222 33344457788888888
Q ss_pred hhhhcccc
Q 016696 320 GASELDKA 327 (384)
Q Consensus 320 ~~~~Lp~~ 327 (384)
.+..+|..
T Consensus 298 ~L~~lp~~ 305 (323)
T PRK10888 298 ALQVLPDT 305 (323)
T ss_pred HHhcCCCC
Confidence 88888764
No 17
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=95.42 E-value=2.3 Score=42.07 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
...++++|...|+.. ..-.+++++...++.-.|++..+++.+-..- ..+....+.+.+.+.++|.|+|+.|=+.|+
T Consensus 137 ~~~~~~~Gq~~~~~~~~~~~~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~ 216 (319)
T TIGR02748 137 TIVEVCRGEIEQIKDKYNFDQNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFV 216 (319)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 346788998888754 2235777777777777777655554432211 112222345778999999999999888775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChh---hhhcccCCHHHHHH---------HHHHHHHHHHHHHHHHHhhh
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDE---DIFSRKVSDEWREF---------MKEQITRARYFYKLAEEGAS 322 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~e---dl~~~~~~~~~~~l---------i~~~~~~A~~~l~~A~~~~~ 322 (384)
+.|+..|+.-+|.=..-+..-..+ .++.....+.+..+ +..-...+..+.++|.+.+.
T Consensus 217 ~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~ 296 (319)
T TIGR02748 217 GTEEELGKPAGGDLLQGNVTLPVLYAMEDPFLKKRIEQVLEETTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLD 296 (319)
T ss_pred CCHHhhCCChhhHHhCCCchHHHHHHhcCcchhHHHHHHHcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHh
Confidence 578899999888765443211111 11111122222222 22234457788888888888
Q ss_pred hcccc
Q 016696 323 ELDKA 327 (384)
Q Consensus 323 ~Lp~~ 327 (384)
.+|..
T Consensus 297 ~lp~~ 301 (319)
T TIGR02748 297 GLPDG 301 (319)
T ss_pred cCCCC
Confidence 88753
No 18
>PRK10581 geranyltranstransferase; Provisional
Probab=94.71 E-value=0.57 Score=46.04 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=77.8
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCC-chhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 192 DMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDS-SASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 192 ~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~-~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.|+.|...|+... ...|.+++..-+++=.|++..+++.+-+.- ... ....+.+.+.+.++|.|+|+.+=+.|+--|-
T Consensus 153 ~l~~GQ~ld~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~ 232 (299)
T PRK10581 153 GMCGGQALDLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDT 232 (299)
T ss_pred hhhHhhHHHHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCCh
Confidence 5778888887642 245788888878777777766665443221 111 1123567789999999999997777763221
Q ss_pred hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 269 SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
+.+.+- .-.|+..|+.+=-+.-.+..-.+.|+.+.++|.+.+..+|.
T Consensus 233 ---------~~~GK~--~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~ 279 (299)
T PRK10581 233 ---------ATLGKR--QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAA 279 (299)
T ss_pred ---------HHHCCC--cchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 111110 12445555544433344556667788899999998888875
No 19
>PLN02857 octaprenyl-diphosphate synthase
Probab=94.16 E-value=0.79 Score=47.17 Aligned_cols=138 Identities=17% Similarity=0.171 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 190 FRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 190 ~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
..++.+|...|+.. ..-.|.+++..-.++=.|.+...++.+-..- .......+.+.+.+.++|.|+|+.+=+.|+
T Consensus 236 ~~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~ 315 (416)
T PLN02857 236 IKDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566665555432 2234677777766666666655555432221 112223456788999999999999877774
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChhhhhccc--CCHHHHHH---------HHHHHHHHHHHHHHHHHhhhhc
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDEDIFSRK--VSDEWREF---------MKEQITRARYFYKLAEEGASEL 324 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~--~~~~~~~l---------i~~~~~~A~~~l~~A~~~~~~L 324 (384)
+.|+..|.+-+|.=.--+..-...+++... ..+.+.++ +.+-.+.|+.+.++|.+.+..|
T Consensus 316 ~~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~L 395 (416)
T PLN02857 316 STEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECL 395 (416)
T ss_pred CHHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578899999888643111110111222211 11222222 3334445778888888888888
Q ss_pred ccc
Q 016696 325 DKA 327 (384)
Q Consensus 325 p~~ 327 (384)
|..
T Consensus 396 p~~ 398 (416)
T PLN02857 396 PRG 398 (416)
T ss_pred CCC
Confidence 764
No 20
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=93.42 E-value=7.2 Score=36.94 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=107.1
Q ss_pred hhHHHhcCChh----hhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHH----HHcCCCC--CHHHHHHHHHH
Q 016696 111 YYLGTLLLTKE----RQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQD----IFNGHPN--DILDAALTDTV 180 (384)
Q Consensus 111 fyla~~~lP~~----~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~----~~~g~p~--~Pv~~aL~~~v 180 (384)
+++++...|.. .+..+.-+.+|.-.+||.-|+.... .......+.+.+ ...+.|. +|+..+|.++.
T Consensus 33 ~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~d~~ 108 (284)
T cd00868 33 YFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTL----EELELFTEAVERWDISAIDELPEYMKPVFKALYDLV 108 (284)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCH----HHHHHHHHHHHhcChhhhhhCCHHHHHHHHHHHHHH
Confidence 35566666654 5666677777778889999985432 223333333332 1122342 57888888877
Q ss_pred HhcC--CC-----------hHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHhchHHHHHHHh--hhCCC-CC-Cchh
Q 016696 181 SKFN--LH-----------IKPFRDMIKGMRMDTE---KCRYANFQELYLYCYYAGGTVGLMSVP--VMGMD-PD-SSAS 240 (384)
Q Consensus 181 ~~~~--L~-----------~~~~~~lI~g~~~DL~---~~~~~t~~dL~~Yc~~vAGtVG~l~l~--ilg~~-~~-~~~~ 240 (384)
++.. .+ .+.+.+++++...... ...++|++|...+-..++|.--.+.+- .+|.. ++ ....
T Consensus 109 ~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~ 188 (284)
T cd00868 109 NEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEW 188 (284)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6432 11 2334455555555543 245788888877777776554333332 23322 11 1112
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 016696 241 AQSIYNAALYLGIGNQLTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAE 318 (384)
Q Consensus 241 ~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~ 318 (384)
.+.+.......+....++|=+-........|.. =+..=++.++|++.++ ..+.+..+++...+.+.+..
T Consensus 189 ~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~e---------A~~~~~~~~~~~~~~~~~~~ 258 (284)
T cd00868 189 LPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE---------ALEELRKMIEEAWKELNEEV 258 (284)
T ss_pred hhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 234445555556666666666666666677765 5556677777877765 33344445554444444433
No 21
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=92.91 E-value=4.3 Score=38.19 Aligned_cols=174 Identities=15% Similarity=0.163 Sum_probs=96.8
Q ss_pred hHHHhcCCh--hhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCC--CCHHHHHHHHHHHhc
Q 016696 112 YLGTLLLTK--ERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHP--NDILDAALTDTVSKF 183 (384)
Q Consensus 112 yla~~~lP~--~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p--~~Pv~~aL~~~v~~~ 183 (384)
.+++.+.|. +.+..+.-+.+|.-..||+.|+.... ..++.+.+.+... ....| ..|+..+|.++..+.
T Consensus 50 ~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~D~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~ 125 (270)
T PF03936_consen 50 LLAARFYPDSSDELLAAADWMAWLFIFDDFFDDGGSA----EELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRI 125 (270)
T ss_dssp HHHHHHSGCGHHHHHHHHHHHHHHHHHHHHHHTTSHH----HHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHH
T ss_pred hhhheeCCCcHHHHHHHHhhchheeeeeeccccccch----HHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHH
Confidence 445556664 55667777888888999999975432 2255565555532 11122 246777888777654
Q ss_pred C--CChHH------------HHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCC-chhHHhHH
Q 016696 184 N--LHIKP------------FRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDS-SASAQSIY 245 (384)
Q Consensus 184 ~--L~~~~------------~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~-~~~~~~~~ 245 (384)
. ++..+ +.+.+++..... ....++|++|...+=..+.|.--.+.+-.++..... ....+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~ 205 (270)
T PF03936_consen 126 AARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLE 205 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHH
T ss_pred HHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHH
Confidence 3 22222 223333333222 245789999998888888888655555433331100 11101111
Q ss_pred ---HHHHHHHHHHHHHHHHHhHHHHHhcCCCC-CCHHHHHhcCCChhh
Q 016696 246 ---NAALYLGIGNQLTNILRDVGEDASRGRIY-LPQDELAKFGLRDED 289 (384)
Q Consensus 246 ---~~A~~LG~AlQLtNILRDv~eD~~~GR~Y-LP~d~L~~~Gvs~ed 289 (384)
......+....++|=|-....+...|... +-.=++.++|++.++
T Consensus 206 ~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~v~~l~~~~~~s~e~ 253 (270)
T PF03936_consen 206 HPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNLVVVLMNEHGLSLEE 253 (270)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSHHHHHHHHHTHHHHH
T ss_pred hchHHHHHHHHHHHHhcccchhhcchhhcccccHHHHhhhhcCCCHHH
Confidence 14555666777777777777777777662 222345555777665
No 22
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=92.79 E-value=9.8 Score=36.75 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=112.9
Q ss_pred hhHHHhcCChhhhHHH---HHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHH
Q 016696 111 YYLGTLLLTKERQKAI---WAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH------PNDILDAALTDTVS 181 (384)
Q Consensus 111 fyla~~~lP~~~R~al---~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~------p~~Pv~~aL~~~v~ 181 (384)
..+++.+.|......+ .-+..|.-..||..|+.... ...+....+.+.++..|. +.+|+..++.++..
T Consensus 44 ~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~d~~~ 120 (303)
T cd00687 44 GDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKS---PEDGEAGVTRLLDILRGDGLDSPDDATPLEFGLADLWR 120 (303)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccC---HHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3466677776443333 34556677789999875311 223333334555555542 23688889999887
Q ss_pred hcC--CChHHHHHH-------HHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHH-Hh-hhCCC-CCCchhHHhHHH
Q 016696 182 KFN--LHIKPFRDM-------IKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMS-VP-VMGMD-PDSSASAQSIYN 246 (384)
Q Consensus 182 ~~~--L~~~~~~~l-------I~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~-l~-ilg~~-~~~~~~~~~~~~ 246 (384)
+.. .+......+ ++++.... .....+|++|...+=..+.|.-..+. +. ++|.. ++.....+.+..
T Consensus 121 r~~~~~~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~~~~~~ 200 (303)
T cd00687 121 RTLARMSAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGLSEFIGGPEVPAAVRLDPVMRA 200 (303)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHHHHHhcCCCCCHHHHhChHHHH
Confidence 653 334444444 44433332 12456787777766666655443222 22 23432 111111122344
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-hcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016696 247 AALYLGIGNQLTNILRDVGEDA-SRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGAS 322 (384)
Q Consensus 247 ~A~~LG~AlQLtNILRDv~eD~-~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~ 322 (384)
.....+..+.++|=|=....+. +.|.. =+-.=++.++|++.++ ..+.+..+++.....|.+.+..+.
T Consensus 201 l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~e---------A~~~~~~~~~~~~~~f~~~~~~l~ 269 (303)
T cd00687 201 LEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEE---------AISVVRDMHNERITQFEELEASLI 269 (303)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566677777787777777777 77773 3444466678888765 444566666777777777666543
No 23
>CHL00151 preA prenyl transferase; Reviewed
Probab=92.26 E-value=4.7 Score=39.98 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=75.4
Q ss_pred HHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHh----
Q 016696 191 RDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRD---- 263 (384)
Q Consensus 191 ~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRD---- 263 (384)
.++.+|...+... ..-.|.++...-++.=.|++..+++.+-.. ...+....+.+...+.++|.|+|+.+=+-|
T Consensus 144 ~~l~~G~~~~~~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~ 223 (323)
T CHL00151 144 TDFAEGEIRQGLVQFDTTLSILNYIEKSFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSS 223 (323)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4556665555432 222355555544444455554444443211 111122345678899999999999987777
Q ss_pred -------HHHHHhcCCCCCCHHHHHhcCCChhhhhc-cc-CCHHHHHH---------HHHHHHHHHHHHHHHHHhhhhcc
Q 016696 264 -------VGEDASRGRIYLPQDELAKFGLRDEDIFS-RK-VSDEWREF---------MKEQITRARYFYKLAEEGASELD 325 (384)
Q Consensus 264 -------v~eD~~~GR~YLP~d~L~~~Gvs~edl~~-~~-~~~~~~~l---------i~~~~~~A~~~l~~A~~~~~~Lp 325 (384)
++.|++.|++-+|.=..-+..-....++. .. ..+.+..+ +.+-...|+.|.++|.+.+..+|
T Consensus 224 ~~~~GK~~g~Dl~eGk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp 303 (323)
T CHL00151 224 TESLGKPIGSDLKNGNLTAPVLFALTQNSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLP 303 (323)
T ss_pred hhhhCCCchhhHhcCchHHHHHHHHhcChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999998886433221101111111 11 11222222 34445567888888888888887
Q ss_pred cc
Q 016696 326 KA 327 (384)
Q Consensus 326 ~~ 327 (384)
..
T Consensus 304 ~~ 305 (323)
T CHL00151 304 PS 305 (323)
T ss_pred CC
Confidence 64
No 24
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=92.26 E-value=13 Score=36.88 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhccCCC-CCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 189 PFRDMIKGMRMDTEKCR-YANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~~-~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
-...|+.|...|+.... ..|.+++..=.+.=.|.+...+..+.+.- .......+.+...+..+|.|+|+.+=+=|+
T Consensus 142 ~~~~~~~GQ~lDl~~~~~~~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~ 221 (322)
T COG0142 142 AINGLCGGQALDLAFENKPVTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITG 221 (322)
T ss_pred HHHHHHHhHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCC
Confidence 44689999999997632 37888888877777777766666654432 222344577889999999999999766554
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChhh-hhccc-CCHHHHHH---------HHHHHHHHHHHHHHHHHhhhhc
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDED-IFSRK-VSDEWREF---------MKEQITRARYFYKLAEEGASEL 324 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~ed-l~~~~-~~~~~~~l---------i~~~~~~A~~~l~~A~~~~~~L 324 (384)
+.|+..|.+-+|.=..-+.+-..+. +.... ....+..+ +..-...|..+.++|.+.+..+
T Consensus 222 d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l 301 (322)
T COG0142 222 DEEELGKPVGSDLKEGKPTLPVLLALEKANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKL 301 (322)
T ss_pred ChHHhCCCcchHHHcCCchHHHHHHHHcCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567777787777654444322111 10000 00022222 1123345788888888888888
Q ss_pred c
Q 016696 325 D 325 (384)
Q Consensus 325 p 325 (384)
|
T Consensus 302 ~ 302 (322)
T COG0142 302 P 302 (322)
T ss_pred C
Confidence 7
No 25
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=91.88 E-value=2.9 Score=39.91 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=52.8
Q ss_pred HHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 016696 195 KGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDVGED 267 (384)
Q Consensus 195 ~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD 267 (384)
.|...|+... .-.|++++..-++.-.|++..+.+.+...- .......+.+...+.++|.|+|+.|=+.|+-.|
T Consensus 120 ~~q~~d~~~~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~ 194 (260)
T PF00348_consen 120 IGQALDLANEDKDPTEEEYLEIIRLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGD 194 (260)
T ss_dssp HHHHHHHHTTTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred eehhhccccccccccHHHHHHHHhhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Confidence 3455666542 367999999999999999888877764431 222234466788999999999999988887644
No 26
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=91.60 E-value=21 Score=37.98 Aligned_cols=209 Identities=16% Similarity=0.189 Sum_probs=111.2
Q ss_pred HHhcCChhh--hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCCC--CHHHHHHHHHHHhc--
Q 016696 114 GTLLLTKER--QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHPN--DILDAALTDTVSKF-- 183 (384)
Q Consensus 114 a~~~lP~~~--R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p~--~Pv~~aL~~~v~~~-- 183 (384)
|+.|-|... |-.+.=+-+|.-.+||+-|.... ...|..+-+++++. ..+.|. .++..+|.+++...
T Consensus 272 a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt----~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~ 347 (542)
T cd00684 272 GTYFEPQYSLARIALAKTIALITVIDDTYDVYGT----LEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEE 347 (542)
T ss_pred hcccCccchHHHHHHHHHHHHHhhhHhhhccCCC----HHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHH
Confidence 444556432 44444455555677888885432 34455555555432 223343 35677777655521
Q ss_pred ------CCC-----hHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHH---
Q 016696 184 ------NLH-----IKPFRDMIKGMRMDTE---KCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYN--- 246 (384)
Q Consensus 184 ------~L~-----~~~~~~lI~g~~~DL~---~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~--- 246 (384)
+.. ++.+.+++.++..... ....+|++|.......++|.--.+..-.++...... +++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~---~e~~e~~~ 424 (542)
T cd00684 348 ELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILT---EEAFEWLE 424 (542)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCC---HHHHHHHh
Confidence 111 2555667777766653 356889999988888777666555554444332111 11121
Q ss_pred ----HHHHHHHHHHHHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016696 247 ----AALYLGIGNQLTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGA 321 (384)
Q Consensus 247 ----~A~~LG~AlQLtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~ 321 (384)
.....+....|.|=+-.......+|-+ =.-.-.|.++|++.++ ..+.+..+++.+...+.+..-..
T Consensus 425 ~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~l~~ 495 (542)
T cd00684 425 SRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEE---------AREEIKKMIEDAWKELNEEFLKP 495 (542)
T ss_pred ccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 112222233333333333334466763 4555578888888766 45567777777777776654322
Q ss_pred -hhccccCcHHHHHHHHH
Q 016696 322 -SELDKASRWPVWTVLIL 338 (384)
Q Consensus 322 -~~Lp~~~r~~v~~~~~l 338 (384)
..+|......++-.+.+
T Consensus 496 ~~~~p~~~~~~~~n~~r~ 513 (542)
T cd00684 496 SSDVPRPIKQRFLNLARV 513 (542)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 34565544433333333
No 27
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=85.73 E-value=18 Score=36.73 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=89.6
Q ss_pred hHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCChHHH
Q 016696 112 YLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHP-NDILDAALTDTVSKFNLHIKPF 190 (384)
Q Consensus 112 yla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p-~~Pv~~aL~~~v~~~~L~~~~~ 190 (384)
..+-..+|.+.+-++...+++.-.+||+.+++. ..+..+. .+++.|.| .||++..|.+.++...---.+|
T Consensus 75 ~~~y~~~~~evqv~IaiyT~yvi~iDD~~~~~~------~~l~~F~---~~l~~Gq~Q~~p~L~~~~~~L~~~~~~fgpf 145 (376)
T PF06330_consen 75 VYCYPHLPKEVQVAIAIYTTYVIIIDDSSQEPS------DDLRTFH---QRLILGQPQKHPLLDGFASLLREMWRHFGPF 145 (376)
T ss_dssp HHHSTTS-HHHHHHHHHHHHHHHHHTT--S-SH------HHHTTHH---HHHHHT---SSHHHHHHHHHHHHHHTTS-HH
T ss_pred EeecCCCCHHHHHHHHHHHHHHHhccccccccc------HHHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHHHcchH
Confidence 455568899999999999999999999988753 2233333 34456765 4999999888776543211122
Q ss_pred ---------HHHHHHHHhh---ccC-CCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHH
Q 016696 191 ---------RDMIKGMRMD---TEK-CRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQL 257 (384)
Q Consensus 191 ---------~~lI~g~~~D---L~~-~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQL 257 (384)
.++|+|.--. ... ..=.++.+..+-..+++.+.+.++-+---. |+. +...+....+......
T Consensus 146 ~anmI~~STLdFi~g~~LE~~~f~~~p~A~~FP~fLR~ktGlsEaYA~FiFPk~~f-pe~----~~~~~y~~AIpdl~~f 220 (376)
T PF06330_consen 146 CANMIVKSTLDFINGCWLEQKNFHGSPGAPDFPDFLRRKTGLSEAYAFFIFPKALF-PEV----EYFIQYTPAIPDLMRF 220 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT----TT-TTHHHHHHHHHH-HHHHHHHT--TTTS--TT----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCccccHHHHhccCcchhheeeecccccC-ChH----HHHHHHHHHHHHHHHH
Confidence 3455554322 111 122367777777777777766655553222 222 1244555677777778
Q ss_pred HHHHHhHHHHH-----hcCCC-CCCHHHHHhcCCChhhh
Q 016696 258 TNILRDVGEDA-----SRGRI-YLPQDELAKFGLRDEDI 290 (384)
Q Consensus 258 tNILRDv~eD~-----~~GR~-YLP~d~L~~~Gvs~edl 290 (384)
+|++-||--=. ...+. |+ ...-.-+|++..+.
T Consensus 221 i~~~NDILSFYKE~l~a~E~~NyI-~n~A~~~g~S~~ea 258 (376)
T PF06330_consen 221 INYVNDILSFYKEELVAGETGNYI-HNRARVHGVSILEA 258 (376)
T ss_dssp HHHHHHHHHHHHHHTTSSSSSSHH-HHHHHHHT--HHHH
T ss_pred HHhhhhHHHHHHhhcccccccchh-hhhhhccCCCHHHH
Confidence 88888875432 33443 44 55555677776553
No 28
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=69.31 E-value=90 Score=31.43 Aligned_cols=162 Identities=11% Similarity=0.134 Sum_probs=90.8
Q ss_pred CChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCC-CCHHHHH----HHHHHHhcC-CC----h
Q 016696 118 LTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHP-NDILDAA----LTDTVSKFN-LH----I 187 (384)
Q Consensus 118 lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p-~~Pv~~a----L~~~v~~~~-L~----~ 187 (384)
.+++...++..-|.+.-.+||+.+++.+. ...+|. ++..|.| .||++.. |.+..+.|+ .- .
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~~~~-----m~~f~~----dL~~G~~qkhP~l~~v~~~l~~~lr~fGpF~s~~Ii 151 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDPYPT-----MVNYFD----DLQAGREQAHPWWALVNEHFPNVLRHFGPFCSLNLI 151 (357)
T ss_pred CCHHHHHHHHHHHheeeEecccccccchH-----HHHHHH----HHhcCCCCCCcHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 68899999999999999999999987653 334443 4456887 6996654 455555554 00 1
Q ss_pred HHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 016696 188 KPFRDMIKGMRMDT-EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDVGE 266 (384)
Q Consensus 188 ~~~~~lI~g~~~DL-~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~e 266 (384)
.--.++++|.-... ....++.-.+.-.|.+...|.-.-...-++-.+ .-+..+-..+...++...+..+|.+-||--
T Consensus 152 kSTLdFv~g~~iEq~nf~~~p~A~~fP~ylR~ksGl~E~yA~FiFPk~--~FpE~~~~~qi~~AIp~~~~~i~~~NDILS 229 (357)
T cd00686 152 RSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKE--QFNERSLFLEITSAIAQMENWMVWVNDLMS 229 (357)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCcccchHHHhccCCcceeEEEecchh--hCchHhhHHHhhHHHHHHHHHHHhhhhhhh
Confidence 12234555543332 223355555666677777665443333333211 111122334445567777777777777643
Q ss_pred ----H-HhcCCCCCCHHHHHhcCCChhhh
Q 016696 267 ----D-ASRGRIYLPQDELAKFGLRDEDI 290 (384)
Q Consensus 267 ----D-~~~GR~YLP~d~L~~~Gvs~edl 290 (384)
. ..+.|.=+=.....-+|+|..+.
T Consensus 230 FYKEe~~~~E~~n~V~Nya~~~GiS~~eA 258 (357)
T cd00686 230 FYKEFDDERDQISLVKNYVVSDEISLHEA 258 (357)
T ss_pred eehhhcccccccchHHHhhhhcCCCHHHH
Confidence 2 12334433344455577777553
No 29
>PLN02279 ent-kaur-16-ene synthase
Probab=66.75 E-value=2.2e+02 Score=31.95 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHH-----cCCCCC--HHHHHHHHHHHhcC--------CC
Q 016696 122 RQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIF-----NGHPND--ILDAALTDTVSKFN--------LH 186 (384)
Q Consensus 122 ~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~-----~g~p~~--Pv~~aL~~~v~~~~--------L~ 186 (384)
.|-.+.=.-++.-.+||+-|... +...|+-+-+++++-- ...|.+ .+..+|-+++.+.. -.
T Consensus 515 aRi~~aK~~~L~tviDD~fD~yG----t~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~ 590 (784)
T PLN02279 515 ARLSWAKNGVLTTVVDDFFDVGG----SEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRN 590 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC----CHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 35555555555566788877432 2455555555555431 112433 35666666655432 21
Q ss_pred -----hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhc
Q 016696 187 -----IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAG 220 (384)
Q Consensus 187 -----~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vA 220 (384)
++.+.+++.++-... .....+|++|+..-+.-+.
T Consensus 591 v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~ 632 (784)
T PLN02279 591 VTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSF 632 (784)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhh
Confidence 244455666644443 2345679888877655433
No 30
>PRK05255 hypothetical protein; Provisional
Probab=63.16 E-value=27 Score=31.62 Aligned_cols=62 Identities=26% Similarity=0.500 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHh
Q 016696 150 PAALDRWEERLQDIFNGHPNDILDAALTDTVSKFN-LHIKPFRDMIKGMRMDTE-KCRYANFQELYLYCYYA 219 (384)
Q Consensus 150 ~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~-L~~~~~~~lI~g~~~DL~-~~~~~t~~dL~~Yc~~v 219 (384)
.-+|..||+.|-. .| ..+|.+.+..|| .+.+.++.+|..-..+.. +.+..+.-+|..|+...
T Consensus 106 ~h~lE~wRdrLi~--~~------d~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~kppk~~R~LF~~Lr~~ 169 (171)
T PRK05255 106 FHKLERWRDRLLA--EG------DDALTEFLEEYPDADRQQLRQLIRNAKKEKAQNKPPKSFRELFQYLREL 169 (171)
T ss_pred HHHHHHHHHHHHh--CC------HHHHHHHHHHCchhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 3578899988754 23 247888889996 899999999999988864 46778999999999864
No 31
>PHA01083 hypothetical protein
Probab=57.58 E-value=28 Score=30.71 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcC-CCCCCHHHHH----hcCCChhhhhcc-----cCCHHHHHHHHHHHHHHHH
Q 016696 244 IYNAALYLGIGNQLTNILRDVGEDASRG-RIYLPQDELA----KFGLRDEDIFSR-----KVSDEWREFMKEQITRARY 312 (384)
Q Consensus 244 ~~~~A~~LG~AlQLtNILRDv~eD~~~G-R~YLP~d~L~----~~Gvs~edl~~~-----~~~~~~~~li~~~~~~A~~ 312 (384)
..+.|..||+.-|.+ -+++.| |.|+|.+... ..|+++++.+-+ ..+++.+.++..++.+...
T Consensus 19 dkqLA~~LGVs~q~I-------S~~R~G~r~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKlng 90 (149)
T PHA01083 19 YKQIAHDLGVSPQKI-------SKMRTGVRTYISDEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQNG 90 (149)
T ss_pred HHHHHHHhCCCHHHH-------HHHHcCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 467788888888877 788999 9999998544 378998876543 4678888888877765443
No 32
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=48.18 E-value=1.8e+02 Score=29.74 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhchHHHHH---HHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-----------HHHHhcCCC
Q 016696 208 NFQELYLYCYYAGGTVGLM---SVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV-----------GEDASRGRI 273 (384)
Q Consensus 208 t~~dL~~Yc~~vAGtVG~l---~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-----------~eD~~~GR~ 273 (384)
-++.|+.=.+.-.|++..- +..|+|.. +....+.+++++.++|.++|+++=+-|. +.|+..|-.
T Consensus 229 ~~e~~e~~~~~KTAsLla~Sc~~~aILgg~--s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~l 306 (384)
T KOG0776|consen 229 GLEYLEFKTLLKTASLLAKSCVAAAILGGG--SEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKL 306 (384)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccc
Confidence 3555555444444444332 33466643 3334578899999999999999644443 335555655
Q ss_pred CCCH----HHHHhcCCChhhhh-------cccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 274 YLPQ----DELAKFGLRDEDIF-------SRKVSDEWREFMKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 274 YLP~----d~L~~~Gvs~edl~-------~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
-=|. +.-.+.+ +.|. .+....++...+..-...|++|-++|.+.+..+|+..
T Consensus 307 T~P~Lf~~e~~pe~~---e~l~~~~~e~~~~~~~~k~v~~v~~a~~la~~~~~~Al~~l~~~p~s~ 369 (384)
T KOG0776|consen 307 TAPVLFALEKSPELR---EKLEREFSEPLDGFDADKAVPGVALAKYLARRHNNKALEALQSLPRSE 369 (384)
T ss_pred cccchhhhhhChHHH---HHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 3333 3221111 1111 1223344555677777778889999988887777643
No 33
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.41 E-value=99 Score=28.04 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhc-cCCCCCCHHHHHHHHHHhc
Q 016696 151 AALDRWEERLQDIFNGHPNDILDAALTDTVSKFN-LHIKPFRDMIKGMRMDT-EKCRYANFQELYLYCYYAG 220 (384)
Q Consensus 151 ~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~-L~~~~~~~lI~g~~~DL-~~~~~~t~~dL~~Yc~~vA 220 (384)
-++..||+.|-. .|. .||.+.+..|| -+.+.++.+|..-.... .+.+++++-++..|.....
T Consensus 117 HklE~~RdrLia--~GD------~Alt~~l~~~P~aDrq~LR~LvRna~kE~a~NKPPks~ReifQ~lk~l~ 180 (187)
T COG3028 117 HKLEQLRDRLIA--EGD------GALTEFLNQYPDADRQQLRTLIRNAKKEQAQNKPPKSFREIFQYLKELM 180 (187)
T ss_pred HHHHHHHHHHHh--cCc------hHHHHHHHHCCcccHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 467888887743 343 48889999997 78999999999888876 4578999999999987543
No 34
>TIGR01439 lp_hng_hel_AbrB looped-hinge helix DNA binding domain, AbrB family. This DNA-binding domain family includes AbrB, a transition state regulator in Bacillus subtilis, whose DNA-binding domain structure in solution was determined by NMR. The domain binds DNA as a dimer in what is termed a looped-hinge helix fold. Some members of the family have two copies of the domain in tandem. The domain is found usually at the N-terminus of a small protein. This model excludes members of family TIGR02609.
Probab=41.04 E-value=12 Score=25.04 Aligned_cols=21 Identities=33% Similarity=0.771 Sum_probs=18.5
Q ss_pred hcCCCCCCHHHHHhcCCChhh
Q 016696 269 SRGRIYLPQDELAKFGLRDED 289 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~ed 289 (384)
++||+.||.++.++.|+...|
T Consensus 5 ~kgri~iP~~~r~~l~~~~gd 25 (43)
T TIGR01439 5 KKGQIVIPKEIREKLGLKEGD 25 (43)
T ss_pred cCCeEEecHHHHHHcCcCCCC
Confidence 579999999999999988654
No 35
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=33.67 E-value=85 Score=27.96 Aligned_cols=60 Identities=27% Similarity=0.512 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccC-CCCCCHHHHHHHHH
Q 016696 150 PAALDRWEERLQDIFNGHPNDILDAALTDTVSKFN-LHIKPFRDMIKGMRMDTEK-CRYANFQELYLYCY 217 (384)
Q Consensus 150 ~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~-L~~~~~~~lI~g~~~DL~~-~~~~t~~dL~~Yc~ 217 (384)
.-++..|+|.|-. |. ..+|..++..|+ .+.+.+..+|.....+... .+....-+|..|..
T Consensus 95 ~h~lE~wRdrLi~---~~-----~~al~e~~~~~p~~D~Q~LRqLiR~a~ke~~~~k~~ka~R~Lfr~Lr 156 (157)
T PF04751_consen 95 FHRLERWRDRLIA---DD-----DSALTEFLAEYPDADRQQLRQLIRNARKEREANKPPKAYRELFRYLR 156 (157)
T ss_dssp HHHHHHHHHHHHH---S------HHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CC-----hHHHHHHHHHCChhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHh
Confidence 3578999998865 32 257888899997 8899999999999998754 55677778887764
No 36
>PRK02899 adaptor protein; Provisional
Probab=27.53 E-value=56 Score=30.12 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHH
Q 016696 271 GRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFY 314 (384)
Q Consensus 271 GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l 314 (384)
=||+|-.+.|...|++.+||..+ +++..++..++.+.|..-+
T Consensus 11 Irv~it~~DL~eRgi~~~dL~~n--~~k~e~lF~~mm~Ea~~e~ 52 (197)
T PRK02899 11 IKIFLTFDDLSERGLTKEDLWRD--APKVHQLFRDMMQEANKEL 52 (197)
T ss_pred EEEEEeHHHHHHcCCCHHHHhcC--cHHHHHHHHHHHHHhhhcc
Confidence 37899999999999999999864 5888999999988886543
No 37
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=25.23 E-value=41 Score=28.65 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=25.9
Q ss_pred HHHHhcCCCCCC-HHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHH
Q 016696 265 GEDASRGRIYLP-QDELAKFGLRDEDIFSRKVSDEWREFMKEQITRA 310 (384)
Q Consensus 265 ~eD~~~GR~YLP-~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A 310 (384)
...+..|-.|+| -+.|..|+|+++| |..++.++...|
T Consensus 26 s~~l~~gFp~~~~P~~l~~~DVs~eD---------W~~F~~dl~~aa 63 (123)
T PF15496_consen 26 SDSLSSGFPYLYPPPPLASHDVSEED---------WTRFLNDLSEAA 63 (123)
T ss_pred CCccccCCCCcCCCchhhhcCCCHHH---------HHHHHHHHHHHH
Confidence 344566777763 4456999999999 677877776543
No 38
>COG5204 SPT4 Transcription elongation factor SPT4 [Transcription]
Probab=24.25 E-value=40 Score=27.54 Aligned_cols=17 Identities=53% Similarity=0.888 Sum_probs=14.1
Q ss_pred HhHHHHH-hcCCCCCCHH
Q 016696 262 RDVGEDA-SRGRIYLPQD 278 (384)
Q Consensus 262 RDv~eD~-~~GR~YLP~d 278 (384)
-|+.||+ ++||+|-|.+
T Consensus 90 edvve~L~~~g~~Y~pR~ 107 (112)
T COG5204 90 EDVVEDLEQHGRIYYPRT 107 (112)
T ss_pred HHHHHHHHHhCccccCCC
Confidence 4777888 7999999986
No 39
>KOG3426 consensus NADH:ubiquinone oxidoreductase, NDUFA6/B14 subunit [Energy production and conversion]
Probab=23.45 E-value=1.1e+02 Score=25.91 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=35.7
Q ss_pred ChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcC--CCCCH
Q 016696 119 TKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNG--HPNDI 171 (384)
Q Consensus 119 P~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g--~p~~P 171 (384)
.+.+|+.+-+..||||.+-.|+|+-+.- .+.+...|+.|..-|.. .-.||
T Consensus 20 ~EARrrvl~~yra~~R~iP~~~~dy~L~---dm~~~~~R~~ir~qf~kn~hvTD~ 71 (124)
T KOG3426|consen 20 TEARRRVLDLYRAWYRSIPTIVDDYNLQ---DMTVSQLRDKIREQFRKNAHVTDP 71 (124)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHhcCCc---ccCHHHHHHHHHHHHHhcCCcCCc
Confidence 3455666666669999999999987653 35677788989887743 34455
No 40
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.80 E-value=2.6e+02 Score=27.82 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHH---HHHHHHHHcCCCCCHHHHHHHHHHH--------hcCCChHHH
Q 016696 122 RQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRW---EERLQDIFNGHPNDILDAALTDTVS--------KFNLHIKPF 190 (384)
Q Consensus 122 ~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~W---r~~L~~~~~g~p~~Pv~~aL~~~v~--------~~~L~~~~~ 190 (384)
--...+||-+++--.--++++..... ...+|.+| |+.-.+-|.|+++-|+....+-.+- -+-++.+.+
T Consensus 203 gG~TfCAlAsL~L~~~l~~e~l~~~~-~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~l 281 (347)
T KOG0367|consen 203 GGATFCALASLALMGKLIPEELSNTS-KVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVL 281 (347)
T ss_pred cchhHHHHHHHHHHhhhhhhhhcccc-CHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHH
Confidence 34567777777765444444433321 25788888 2222335888998888776554332 123566777
Q ss_pred HHHHHHHHhhccC---CCCCCHHHHHHHH
Q 016696 191 RDMIKGMRMDTEK---CRYANFQELYLYC 216 (384)
Q Consensus 191 ~~lI~g~~~DL~~---~~~~t~~dL~~Yc 216 (384)
++++...+.-+-+ .-+....|+..-+
T Consensus 282 r~fll~~Q~~~iGGFsK~P~~~pD~~Hsy 310 (347)
T KOG0367|consen 282 RKFLLSTQDKLIGGFSKWPEEDPDLLHSY 310 (347)
T ss_pred HHHHHHhhhhhcCcccCCCccCchHHHHH
Confidence 8887777766632 2233445554433
No 41
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=20.40 E-value=6.3e+02 Score=24.71 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCC
Q 016696 128 AVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPN-DILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRY 206 (384)
Q Consensus 128 ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~-~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~ 206 (384)
++=.+...+.+.++.+......+...+.|.+..++.|...-. +........++...--=+..+.++++..-..+ .+
T Consensus 192 a~~~~~~~l~~~~~~g~~~~s~re~~d~Wi~~ae~~~~~~~~S~ef~~~~g~~~~a~m~~r~~~~~~~e~~L~~l---~l 268 (293)
T PF09712_consen 192 AFERMMEKLQERAEEGEQIKSWREFYDIWIDAAEEAYEELFRSEEFAQAYGQLVNALMDLRKQQQEVVEEYLRSL---NL 268 (293)
T ss_pred HHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
Confidence 334445555566666655545578889999999988764321 22333333333321111344555555544443 47
Q ss_pred CCHHHHHHHHHH
Q 016696 207 ANFQELYLYCYY 218 (384)
Q Consensus 207 ~t~~dL~~Yc~~ 218 (384)
+|-.|++.....
T Consensus 269 PTr~evd~l~k~ 280 (293)
T PF09712_consen 269 PTRSEVDELYKR 280 (293)
T ss_pred CCHHHHHHHHHH
Confidence 777777765544
Done!