Query 016696
Match_columns 384
No_of_seqs 189 out of 1330
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hd1_A Squalene synthase HPNC; 100.0 4.2E-68 1.4E-72 515.5 30.5 281 90-378 8-288 (294)
2 3acx_A Dehydrosqualene synthas 100.0 5.6E-65 1.9E-69 493.3 34.2 276 92-377 9-291 (293)
3 3vj8_A Squalene synthase; farn 100.0 3.6E-54 1.2E-58 425.6 21.7 283 89-373 5-302 (343)
4 3rmg_A Octaprenyl-diphosphate 96.6 0.082 2.8E-06 51.3 16.9 138 189-326 141-307 (334)
5 3nf2_A Putative polyprenyl syn 96.5 0.037 1.3E-06 54.2 14.3 137 189-326 151-324 (352)
6 3kb9_A EPI-isozizaene synthase 96.3 0.94 3.2E-05 44.4 23.0 200 112-321 92-315 (382)
7 3apz_A Geranyl diphosphate syn 96.2 0.48 1.6E-05 46.0 19.8 139 189-327 161-324 (348)
8 4f62_A Geranyltranstransferase 96.1 0.065 2.2E-06 51.7 12.9 125 192-327 152-279 (317)
9 2her_A Fragment, farnesyl pyro 96.1 0.1 3.4E-06 51.4 14.4 155 189-347 176-356 (368)
10 2qis_A Farnesyl pyrophosphate 96.0 0.22 7.7E-06 49.0 16.6 136 190-327 185-356 (374)
11 3lk5_A Geranylgeranyl pyrophos 96.0 0.35 1.2E-05 47.7 17.9 134 191-326 185-353 (380)
12 3lom_A Geranyltranstransferase 96.0 0.55 1.9E-05 45.1 18.9 125 191-327 158-287 (313)
13 1wmw_A Geranylgeranyl diphosph 96.0 0.3 1E-05 47.1 17.2 88 190-281 139-244 (330)
14 1wy0_A Geranylgeranyl pyrophos 96.0 0.44 1.5E-05 46.2 18.4 137 189-326 145-323 (342)
15 2q80_A Geranylgeranyl pyrophos 95.9 0.19 6.4E-06 48.0 15.4 135 189-326 119-281 (301)
16 3ts7_A Geranyltranstransferase 95.9 0.082 2.8E-06 51.2 12.7 126 191-327 158-286 (324)
17 2e8v_A Geranylgeranyl pyrophos 95.8 0.039 1.3E-06 53.7 10.0 90 189-279 139-245 (340)
18 3p8l_A Geranyltranstransferase 95.7 0.18 6.3E-06 48.2 14.3 125 191-326 156-282 (302)
19 3p8r_A Geranyltranstransferase 95.7 0.079 2.7E-06 50.8 11.8 125 192-327 159-286 (302)
20 3uca_A Geranyltranstransferase 95.6 0.089 3.1E-06 50.9 11.8 127 191-328 180-309 (324)
21 1uby_A FPS, farnesyl diphospha 95.6 0.38 1.3E-05 47.2 16.5 134 191-327 179-349 (367)
22 1v4e_A Octoprenyl-diphosphate 95.6 0.21 7E-06 47.7 14.2 86 189-279 135-234 (299)
23 3lmd_A Geranylgeranyl pyrophos 95.6 0.086 2.9E-06 51.8 11.7 138 189-327 168-334 (360)
24 3mzv_A Decaprenyl diphosphate 95.5 0.3 1E-05 47.4 15.0 138 189-327 147-315 (341)
25 3lsn_A Geranyltranstransferase 95.5 0.12 4.2E-06 49.5 12.0 124 192-327 153-280 (304)
26 1ps1_A Pentalenene synthase; a 95.4 1.9 6.5E-05 40.9 22.2 198 112-320 52-272 (337)
27 3pko_A Geranylgeranyl pyrophos 95.4 0.21 7E-06 48.5 13.4 136 189-326 151-315 (334)
28 3aqb_B Component B of hexapren 95.4 0.26 9E-06 47.5 14.0 138 190-327 139-307 (325)
29 2ihi_A Pyrophosphate synthase; 95.3 1 3.6E-05 44.5 18.5 136 190-326 187-377 (395)
30 1rtr_A Geranyltranstransferase 95.3 0.14 4.7E-06 49.0 11.8 124 191-326 148-274 (301)
31 3oyr_A Trans-isoprenyl diphosp 95.3 0.29 9.9E-06 47.7 14.1 138 190-327 160-327 (345)
32 1di1_A Aristolochene synthase; 95.1 2.1 7.1E-05 39.8 19.7 192 113-319 49-265 (300)
33 4dhd_A Polyprenyl synthetase; 95.0 0.28 9.6E-06 48.0 13.1 136 190-326 141-320 (358)
34 3tc1_A Octaprenyl pyrophosphat 94.8 0.29 9.8E-06 47.1 12.4 135 189-326 130-292 (315)
35 1yhl_A Farnesyl pyrophosphate 94.7 0.43 1.5E-05 46.6 13.6 135 190-327 160-342 (362)
36 3ipi_A Geranyltranstransferase 94.6 0.32 1.1E-05 46.3 12.2 124 190-327 136-266 (295)
37 2h8o_A Geranyltranstransferase 94.6 0.16 5.6E-06 49.3 10.1 124 191-326 192-318 (335)
38 3dyh_A Farnesyl pyrophosphate 94.2 1.1 3.8E-05 44.2 15.5 137 190-328 188-371 (390)
39 1rqj_A Geranyltranstransferase 93.2 0.34 1.2E-05 46.1 9.3 124 191-326 152-279 (299)
40 1n1b_A (+)-bornyl diphosphate 93.1 3.7 0.00013 42.3 17.7 183 123-318 288-498 (549)
41 3m0g_A Farnesyl diphosphate sy 93.1 0.082 2.8E-06 50.5 4.8 114 191-328 147-274 (297)
42 2j1p_A Geranylgeranyl pyrophos 93.0 0.9 3.1E-05 43.1 12.0 113 192-329 161-278 (293)
43 3pde_A Farnesyl-diphosphate sy 92.6 0.97 3.3E-05 43.3 11.6 124 191-325 155-280 (309)
44 3npk_A Geranyltranstransferase 92.2 1.4 4.8E-05 41.8 12.1 123 191-327 145-270 (291)
45 2ftz_A Geranyltranstransferase 91.5 2.6 9E-05 39.7 13.1 121 190-326 143-267 (284)
46 2azj_A Geranylgeranyl pyrophos 91.5 1.3 4.4E-05 41.9 10.9 111 190-326 144-261 (289)
47 3bny_A Aristolochene synthase; 91.0 10 0.00035 35.5 21.6 191 113-318 63-278 (320)
48 2ong_A 4S-limonene synthase; m 90.9 13 0.00045 38.1 18.7 182 123-317 282-490 (543)
49 3kra_B Geranyl diphosphate syn 90.0 0.94 3.2E-05 42.6 8.4 69 191-259 149-219 (274)
50 3mav_A Farnesyl pyrophosphate 89.3 17 0.00059 35.6 18.7 119 208-327 231-378 (395)
51 3llw_A Geranyltranstransferase 88.6 3.1 0.00011 39.7 11.0 122 191-325 159-283 (311)
52 3n0f_A Isoprene synthase; terp 88.2 26 0.00088 36.1 19.6 182 123-317 291-499 (555)
53 2j5c_A 1,8-cineole synthase; t 88.2 11 0.00039 38.8 15.8 188 123-327 309-526 (569)
54 3m00_A Aristolochene synthase; 87.6 27 0.00094 35.8 19.3 195 122-329 288-508 (550)
55 3v1v_A 2-MIB synthase, 2-methy 87.5 13 0.00043 37.1 15.2 178 112-289 161-370 (433)
56 2q58_A Fragment, farnesyl pyro 86.4 5.9 0.0002 38.6 11.8 138 189-327 176-338 (368)
57 3g4d_A (+)-delta-cadinene synt 85.8 35 0.0012 35.1 19.8 179 123-317 293-501 (554)
58 3qkc_B Geranyl diphosphate syn 76.9 4.2 0.00014 38.0 6.4 68 191-258 151-219 (273)
59 3sdr_A Alpha-bisabolene syntha 65.2 1.5E+02 0.0053 31.8 16.9 178 123-316 552-763 (817)
60 3s9v_A Abietadiene synthase, c 63.6 1.6E+02 0.0055 31.5 20.6 181 123-316 524-732 (785)
61 1yyq_A Trichodiene synthase; t 57.1 1.4E+02 0.0049 28.8 19.7 158 118-289 81-257 (374)
62 2p0t_A UPF0307 protein pspto_4 51.5 21 0.00071 31.2 5.3 65 150-222 105-171 (176)
63 3p5p_A Taxadiene synthase; cla 50.7 2.6E+02 0.0088 29.8 19.4 182 123-317 493-702 (764)
64 2l66_A SSO7C4, transcriptional 37.5 15 0.00053 25.2 1.8 22 269-290 10-31 (53)
65 1yfb_A Transition state regula 35.9 10 0.00035 27.0 0.7 22 269-290 20-41 (59)
66 2pmr_A Uncharacterized protein 32.0 1.1E+02 0.0039 23.3 6.1 51 302-355 31-81 (87)
67 2qzc_A Transcriptional activat 29.5 1.6E+02 0.0055 25.5 7.7 61 278-349 91-151 (214)
68 4fn6_A Thiaminase-2, thiaminas 25.1 2E+02 0.0068 25.3 7.6 63 277-350 87-152 (229)
69 3ibx_A TENA, HP1287, putative 24.1 1.8E+02 0.0063 25.3 7.1 62 277-349 91-153 (221)
70 2gm8_A TENA homolog/THI-4 thia 22.8 2.6E+02 0.0089 24.3 7.9 61 278-349 96-157 (221)
71 3no6_A Transcriptional activat 22.1 2.2E+02 0.0076 25.5 7.4 63 277-350 106-171 (248)
72 3mvu_A TENA family transcripti 20.9 2.8E+02 0.0097 24.2 7.7 63 277-350 93-156 (226)
73 1udd_A Transcriptional regulat 20.7 2.7E+02 0.0091 24.3 7.5 61 278-349 89-150 (226)
No 1
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=4.2e-68 Score=515.45 Aligned_cols=281 Identities=25% Similarity=0.392 Sum_probs=247.3
Q ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCCC
Q 016696 90 AMFLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHPN 169 (384)
Q Consensus 90 ~~~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p~ 169 (384)
+..|+++|++|+++++++++|||++++|||++.|+++++||+|||++|||+|++..+ ...+|+||++.|++++.|.|.
T Consensus 8 p~~l~~~y~~C~~i~~~~~~sF~~a~~~lp~~~R~~~~alYaf~R~~Ddi~D~~~~~--~~~~L~~~~~~l~~~~~g~~~ 85 (294)
T 4hd1_A 8 PVELRGDFEVCRRLTRSHYENFSVVSLFVPRHLRPHFYSVYAFCRGVDDLGDEFAGD--RMAALDAYEEELRRAFAGEAT 85 (294)
T ss_dssp CGGGHHHHHHHHHHHHHHCTTHHHHTTTCCTTTHHHHHHHHHHHHHHHHTSTTCCSC--HHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHhCCcHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccCCChh--HHHHHHHHHHHHHHHhcCCCC
Confidence 467899999999999999999999999999999999999999999999999997653 567999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHH
Q 016696 170 DILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAAL 249 (384)
Q Consensus 170 ~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~ 249 (384)
||+..+|.+++++|+||.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++|+|..++ +..+.|.
T Consensus 86 ~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g~~~~------~~~~~A~ 159 (294)
T 4hd1_A 86 TPAFRALQFTIATCNLPMEPFLRLIEANRRDQRKHTYDTWEDLRDYCRYSADPVGRLVLGIFGCLDD------ERARLSD 159 (294)
T ss_dssp SHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSBCCSHHHHHHHHHHHTHHHHHHHHHHTTCCSH------HHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccchHHHHHHHHhCCCCH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997542 3567899
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 016696 250 YLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASR 329 (384)
Q Consensus 250 ~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r 329 (384)
++|+|+|||||||||+||+++||||||.|+|++||++++|+.++..+++++.++.+++++|+.||++|..++..||++++
T Consensus 160 ~lG~AlQltNilRDv~eD~~~gR~YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 160 ATCTALQVANHMQDIDRDLALGRIYVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCBCSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred HHHHHHHHHHHHHhchhhhccCceeCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHHHHHHHhcc
Q 016696 330 WPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQS 378 (384)
Q Consensus 330 ~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~~~~~~ 378 (384)
+++.++..+|+.||++|+++||++|++|+++++++|+|++|+++.....
T Consensus 240 ~~~~~~~~~y~~il~~i~~~~~~~~~~R~~vs~~~Kl~l~~~al~~~~~ 288 (294)
T 4hd1_A 240 RQLKLYRLGGEAILAAIRRQGYNPFAGRPVVSGKQKLRIALSVLAGGAK 288 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999887543
No 2
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=100.00 E-value=5.6e-65 Score=493.27 Aligned_cols=276 Identities=25% Similarity=0.422 Sum_probs=262.9
Q ss_pred hHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC----
Q 016696 92 FLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH---- 167 (384)
Q Consensus 92 ~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~---- 167 (384)
.+++++++|.++++++|+|||++++|||++.|+++++||+|||++|||+|+++.+ .. |+||++.|++++.|.
T Consensus 9 ~~~~~~~~c~~~~~~~s~sF~~a~~~Lp~~~R~av~alYaf~R~~Ddi~D~~~~~---~~-L~~w~~~l~~~~~g~~~~~ 84 (293)
T 3acx_A 9 MMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDI---QF-LNQIKEDIQSIEKYPYEYH 84 (293)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGGTSST---HH-HHHHHHHHHHHHHCTTSCC
T ss_pred hhHHHHHHHHHHHhccCCcHHHHHHhCCHHHHHHHHHHHHHHHHHhhHhccCCCH---HH-HHHHHHHHHHHhCCCCccc
Confidence 3789999999999999999999999999999999999999999999999998765 33 999999999999887
Q ss_pred ---CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhH
Q 016696 168 ---PNDILDAALTDTVSKFNLHIKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSI 244 (384)
Q Consensus 168 ---p~~Pv~~aL~~~v~~~~L~~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~ 244 (384)
|.|||..+|.+++++|+++.++|.+||+||++|+.+.+|+|++||+.|||+|||+||+|+++++|..+. ++.
T Consensus 85 ~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~~-----~~~ 159 (293)
T 3acx_A 85 HFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHET-----HQT 159 (293)
T ss_dssp CCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCC-----HHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCc-----HHH
Confidence 579999999999999999999999999999999999999999999999999999999999999997542 236
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016696 245 YNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASEL 324 (384)
Q Consensus 245 ~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~L 324 (384)
.+.|.+||.|+|+||||||++||+++||||||.|+|++||++++|++++..++++++++.+++.+|+.||.+|..++..|
T Consensus 160 ~~~A~~lG~AlQltNilRDv~eD~~~gR~YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 160 YDVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHHHHHHHhc
Q 016696 325 DKASRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAYYRAQ 377 (384)
Q Consensus 325 p~~~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~~~~~ 377 (384)
|+++++++.++..+|+.||++|+++||+ |++|+++++++|+|++|+++.+..
T Consensus 240 p~~~r~~~~~~~~~~~~iL~~i~~~~~~-~~~r~~v~~~~k~~~~~~a~~~~~ 291 (293)
T 3acx_A 240 SIEAQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSKYH 291 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCceeCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 999999999999999999998763
No 3
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=100.00 E-value=3.6e-54 Score=425.56 Aligned_cols=283 Identities=20% Similarity=0.145 Sum_probs=239.3
Q ss_pred chhhHHHHHHHHHHHHHhcCcchhHHHhcCChhhhHHHHHHHHHHHHHhhhcCCCCCCC-ChHHHHHHHHHHHHHH---H
Q 016696 89 DAMFLDEAYERCRKICAEYAKTYYLGTLLLTKERQKAIWAVYAWCKRTDELVDGPNAFC-VSPAALDRWEERLQDI---F 164 (384)
Q Consensus 89 ~~~~l~~a~~~C~~i~r~~s~sfyla~~~lP~~~R~al~ALYAf~R~~DdivD~~~~~~-~~~~rL~~Wr~~L~~~---~ 164 (384)
+...++++|++|.++++++|+|||+++++||++.|++++++|+|||.+|||+|++..+. .+..+|+||++.+.+. +
T Consensus 5 ~~~~l~~~~~~C~~~l~~~srsF~la~~lLp~~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~ 84 (343)
T 3vj8_A 5 DQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRF 84 (343)
T ss_dssp ---CCCHHHHHHHHHHHHHHGGGHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCC
T ss_pred CcccchHHHHHHHHHHHhcCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhh
Confidence 44567899999999999999999999999999999999999999999999999986432 3456899999998753 4
Q ss_pred cCC-C-CCHHHHHHHHHHHhc-CCC-------hHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCC
Q 016696 165 NGH-P-NDILDAALTDTVSKF-NLH-------IKPFRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMD 234 (384)
Q Consensus 165 ~g~-p-~~Pv~~aL~~~v~~~-~L~-------~~~~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~ 234 (384)
.|. | .+++...+..++..| .++ ...+.+|++||++|+. .+|+|++||+.|||+|||+||+|+++++|..
T Consensus 85 ~~~~~~~~~ll~~~p~v~~~f~~l~~~~~~~i~~~~~~m~~gm~~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~ 163 (343)
T 3vj8_A 85 MESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSAS 163 (343)
T ss_dssp CCCCSTTTHHHHTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCChhhHHHHhcCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCC
Confidence 443 2 244544443344332 222 3455679999999998 7899999999999999999999999999875
Q ss_pred CCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHH
Q 016696 235 PDSSASAQSIYNAALYLGIGNQLTNILRDVGEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFY 314 (384)
Q Consensus 235 ~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l 314 (384)
+......++..+.|.+||.|+|+||||||++||+++||+|||.|+|.+||++++||..++.+++++.++.+++.+|+.||
T Consensus 164 ~~~~~~~~~~~~~A~~lG~AlQltNilRDv~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~ 243 (343)
T 3vj8_A 164 EFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHI 243 (343)
T ss_dssp TSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTH
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhHHHHhCCCeeCCHHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 42212122457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcccc-CcHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccChHHHHHHHHHHH
Q 016696 315 KLAEEGASELDKA-SRWPVWTVLILYQKILDAIQDNDYDNLTKRAYVGNIKKLFLVRQAY 373 (384)
Q Consensus 315 ~~A~~~~~~Lp~~-~r~~v~~~~~ly~~iL~~Ie~~~y~vf~~r~~v~~~~kl~~l~~a~ 373 (384)
.+|..++..||.. .+.++.++..++..+|++|.++ +++|++++.+++++++|++|++.
T Consensus 244 ~~a~~~~~~L~~~~~~~~~~ip~~lA~~tL~~i~~~-~~v~~~rvkisr~~~~~l~~ra~ 302 (343)
T 3vj8_A 244 PDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNN-QQVFKGAVKIRKGQAVTLMMDAT 302 (343)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTC-GGGGTSCCCCCHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHhC-CccccCCCcccHHHHHHHHHHhC
Confidence 9999999999886 3447788889999999999875 79999999999999999999863
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.082 Score=51.34 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
.+.+|+.|...|+... .-.|++++..-+++-.|++..+++.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 141 ~~~~~~~GQ~ldl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 141 LGQKLAEGELLQLSNVSNHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3568999999998653 24688998888888888877776664322 1112223456788999999999999877776
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCCh--hhh---h-cccCCHH-HH---H------HHHHHHHHHHHHHHHHHH
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRD--EDI---F-SRKVSDE-WR---E------FMKEQITRARYFYKLAEE 319 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~--edl---~-~~~~~~~-~~---~------li~~~~~~A~~~l~~A~~ 319 (384)
+.|+..|++-+|.=..-+..-.+ +.| + ++..++. +. + .+..--..++.+.++|.+
T Consensus 221 ~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~ 300 (334)
T 3rmg_A 221 DSKKIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFD 300 (334)
T ss_dssp CC------CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 48999999999976543332111 111 1 1222222 22 2 133344567888899998
Q ss_pred hhhhccc
Q 016696 320 GASELDK 326 (384)
Q Consensus 320 ~~~~Lp~ 326 (384)
.+..+|.
T Consensus 301 ~L~~lp~ 307 (334)
T 3rmg_A 301 LLAALPD 307 (334)
T ss_dssp HHTTSCC
T ss_pred HHHhCCC
Confidence 8888885
No 5
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=96.55 E-value=0.037 Score=54.17 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
.+.+|+.|...|+.. ..-.|++++..-.++-.|++..+.+.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 151 ~~~~l~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 151 ASRSLIDGQAQDISYEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999854 235689999888888888887777665322 1112223456788999999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChh--hh---hcc--------cCC-HHHHH---H------HHHHHHHHH
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDE--DI---FSR--------KVS-DEWRE---F------MKEQITRAR 311 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~e--dl---~~~--------~~~-~~~~~---l------i~~~~~~A~ 311 (384)
+.|++.|++-+|.=..-+.+ +++ .| +.. ..+ +.+.. + +..-.+.++
T Consensus 231 gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~ 309 (352)
T 3nf2_A 231 GDPDATGKQTWSDLRQRKKSLPVVAALAAG-GAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEAR 309 (352)
T ss_dssp CCHHHHSSCTTHHHHTTCCCHHHHHHHHHC-SHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CChhhhCCCcCcccccCCccHHHHHHHHhC-ChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHH
Confidence 57899999999976544432 221 22 211 112 22222 2 344445678
Q ss_pred HHHHHHHHhhhhccc
Q 016696 312 YFYKLAEEGASELDK 326 (384)
Q Consensus 312 ~~l~~A~~~~~~Lp~ 326 (384)
.+.++|.+.+..+|+
T Consensus 310 ~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 310 RQHTIAIEALDAVDM 324 (352)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 899999999988876
No 6
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=96.29 E-value=0.94 Score=44.37 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=117.6
Q ss_pred hHHHhcCChhhhH---HHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhc
Q 016696 112 YLGTLLLTKERQK---AIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH-----PNDILDAALTDTVSKF 183 (384)
Q Consensus 112 yla~~~lP~~~R~---al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~-----p~~Pv~~aL~~~v~~~ 183 (384)
.+++.+.|..-.. -+.-+.+|.-..||+.|+...+. ....+..+.+.+..+..|. +.+|+..+|.++.++.
T Consensus 92 ~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~-~~~~~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~~~ 170 (382)
T 3kb9_A 92 DLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHG-RAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRL 170 (382)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccc-CHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHH
Confidence 4455666764433 44566667778899998632110 1445555566666666552 2468999999998876
Q ss_pred C--CChHH-------HHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHh--hhCCC-CCCchhHHhHHHHH
Q 016696 184 N--LHIKP-------FRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVP--VMGMD-PDSSASAQSIYNAA 248 (384)
Q Consensus 184 ~--L~~~~-------~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~--ilg~~-~~~~~~~~~~~~~A 248 (384)
. .+... +.++++++.... ....++|++|...+...+.|.--.+.+- .+|.. ++............
T Consensus 171 ~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~ 250 (382)
T 3kb9_A 171 YAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAA 250 (382)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHH
Confidence 4 44433 345555554443 2346899999999988888864433332 23432 11100112233345
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016696 249 LYLGIGNQLTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGA 321 (384)
Q Consensus 249 ~~LG~AlQLtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~ 321 (384)
...+..+-|+|=|-.......+|.+ -+-.-++.++|++.++ ..+.+.++++.+.+.+.++.+.+
T Consensus 251 ~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~k~~~~~~~~L 315 (382)
T 3kb9_A 251 LLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEE---------AIGEVRRRVEECITEFLAVERDA 315 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777766666666777864 2333467789999876 34455566666655555554433
No 7
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=96.17 E-value=0.48 Score=46.03 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhccCCC--CCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEKCR--YANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~~--~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
...+|+.|...|+.... -.|++++..-.++-.|++..+++.+...- ..+....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 161 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~ 240 (348)
T 3apz_A 161 AVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFT 240 (348)
T ss_dssp HHHHHHHHHHHHHTCCHHHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34689999999997642 35777777766666677666665543221 112223345678899999999999888776
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChhhhhccc--CCHHHHH---------HHHHHHHHHHHHHHHHHHhhhh
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDEDIFSRK--VSDEWRE---------FMKEQITRARYFYKLAEEGASE 323 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~--~~~~~~~---------li~~~~~~A~~~l~~A~~~~~~ 323 (384)
+.|++.|++-+|.=..-+..-...+++... ..+.+.. .+...-+.++.+.++|.+.+..
T Consensus 241 gd~~~~GK~~g~Dl~egK~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~ 320 (348)
T 3apz_A 241 GTSASLGKGSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGS 320 (348)
T ss_dssp TTTTCTTCSCCHHHHTTCCCHHHHHHHHHCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcCCcchhhHhCCChhHHHHHHHHcCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHc
Confidence 468899999999865333321122222221 1222222 2333445677888888888888
Q ss_pred cccc
Q 016696 324 LDKA 327 (384)
Q Consensus 324 Lp~~ 327 (384)
+|..
T Consensus 321 l~~~ 324 (348)
T 3apz_A 321 LPET 324 (348)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=96.08 E-value=0.065 Score=51.70 Aligned_cols=125 Identities=17% Similarity=0.091 Sum_probs=77.6
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCC-C-CCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 192 DMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMD-P-DSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 192 ~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~-~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
+|+.|...|+... ...|++++..-.+.-.|++..+++.+...- . .+....+.+...+.++|.|+|+.+=+-|+--|-
T Consensus 152 ~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 231 (317)
T 4f62_A 152 GMITGQMIDLSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDT 231 (317)
T ss_dssp THHHHHHHHHHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred hHHHhHHHHHhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 5889999998652 346888888888777787777766653321 1 122234567889999999999998777763321
Q ss_pred hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 269 SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
+.+.|- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 232 ---------~~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 279 (317)
T 4f62_A 232 ---------ETLGKT--QFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGDK 279 (317)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred ---------HhhCCC--cchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 111110 113444454443333355666677889999999999989863
No 9
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=96.07 E-value=0.1 Score=51.42 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhccCCC---CCCH-HHHHHHHHHhchHH-HHHHHh---hhCC-CCCCchhHHhHHHHHHHHHHHHHHHH
Q 016696 189 PFRDMIKGMRMDTEKCR---YANF-QELYLYCYYAGGTV-GLMSVP---VMGM-DPDSSASAQSIYNAALYLGIGNQLTN 259 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~~---~~t~-~dL~~Yc~~vAGtV-G~l~l~---ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtN 259 (384)
...+++.|...|+.... -.+. +++..-+++-.|.+ ..+.+. +++. +++. ...+.+...+.++|.|+|+.+
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~-~~~~~l~~~g~~lG~aFQI~D 254 (368)
T 2her_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSS-AQLNLIEAILYKLGEFYQVHN 254 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCC-SSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999997643 3345 55555455555554 333333 2332 2221 003457889999999999999
Q ss_pred HHHhH------HHHHhcCCCCCCHHHHHhcCCChhh--hhc---ccCCHHHHHH------HHHHHHHHHHHHHHHHHhhh
Q 016696 260 ILRDV------GEDASRGRIYLPQDELAKFGLRDED--IFS---RKVSDEWREF------MKEQITRARYFYKLAEEGAS 322 (384)
Q Consensus 260 ILRDv------~eD~~~GR~YLP~d~L~~~Gvs~ed--l~~---~~~~~~~~~l------i~~~~~~A~~~l~~A~~~~~ 322 (384)
=+-|+ +.|++.|++-+|.=..-+. .++++ ++. +..+..++++ +....+.++.++++|...+.
T Consensus 255 D~LD~~~~GK~g~Dl~egK~T~pvi~al~~-a~~~~r~~L~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~ 333 (368)
T 2her_A 255 DVSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVK 333 (368)
T ss_dssp HHHHHHSCCSSSCTTTTTCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCChHhCCcccHHHHHHHHh-CCHHHHHHHHHHhCCcHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88887 4788999998887533222 23321 111 1111445544 33445567899999999999
Q ss_pred hccccCcHHHHHHHHHHHHHHHHHH
Q 016696 323 ELDKASRWPVWTVLILYQKILDAIQ 347 (384)
Q Consensus 323 ~Lp~~~r~~v~~~~~ly~~iL~~Ie 347 (384)
.+|... +-.+...+...+.+.|.
T Consensus 334 ~lp~~~--~k~~L~~l~~~i~~~~~ 356 (368)
T 2her_A 334 DITDDS--LQKVFIHLIHQISELIT 356 (368)
T ss_dssp TCSCHH--HHHHHHHHHHHHHHHHC
T ss_pred hCCCcH--HHHHHHHHHHHHHHHhh
Confidence 998742 22234445555555554
No 10
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=96.00 E-value=0.22 Score=48.97 Aligned_cols=136 Identities=10% Similarity=-0.004 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhccCCC---C----CCHHHHHHHHHHhchHH-HHHHHhh---hCCCCCCchhHHhHHHHHHHHHHHHHHH
Q 016696 190 FRDMIKGMRMDTEKCR---Y----ANFQELYLYCYYAGGTV-GLMSVPV---MGMDPDSSASAQSIYNAALYLGIGNQLT 258 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~~---~----~t~~dL~~Yc~~vAGtV-G~l~l~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLt 258 (384)
..+++.|...|+.... . .|++++..-.++=.|.+ ..+.+.+ ++.. .+....+.+...+.++|.|+|+.
T Consensus 185 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~-a~~~~~~~l~~~g~~lG~aFQI~ 263 (374)
T 2qis_A 185 SYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGI-DGEKEHANAKKILLEMGEFFQIQ 263 (374)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999986432 2 58999988888887877 5555543 3320 12223456788999999999999
Q ss_pred HHHHhHH----------HHHhcCCCCCCHHHHHhcCCChh--hhhc----ccCCHHHH---HHHH------HHHHHHHHH
Q 016696 259 NILRDVG----------EDASRGRIYLPQDELAKFGLRDE--DIFS----RKVSDEWR---EFMK------EQITRARYF 313 (384)
Q Consensus 259 NILRDv~----------eD~~~GR~YLP~d~L~~~Gvs~e--dl~~----~~~~~~~~---~li~------~~~~~A~~~ 313 (384)
+=+-|+- .|+..|++-+|.=..-+.. +++ +++. ....+.+. +++. .....++.+
T Consensus 264 DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~ 342 (374)
T 2qis_A 264 DDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA-TPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDS 342 (374)
T ss_dssp HHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 8888873 4778899988875432221 222 1211 11112222 2222 123346778
Q ss_pred HHHHHHhhhhcccc
Q 016696 314 YKLAEEGASELDKA 327 (384)
Q Consensus 314 l~~A~~~~~~Lp~~ 327 (384)
+++|...+..+|..
T Consensus 343 ~~~a~~~L~~lp~~ 356 (374)
T 2qis_A 343 YSHIMALIEQYAAP 356 (374)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCc
Confidence 88888888877754
No 11
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=95.98 E-value=0.35 Score=47.73 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=84.6
Q ss_pred HHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHH-HHHHHhh---hCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH
Q 016696 191 RDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTV-GLMSVPV---MGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV 264 (384)
Q Consensus 191 ~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtV-G~l~l~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv 264 (384)
.+|+.|.-.|+.. ..-.|++++..-+++-.|.. ..+.+.+ ++..+ ....+.+...+.++|.|+|+.+=+-|+
T Consensus 185 ~~~~~GQ~lDl~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~--~~~~~~l~~~G~~lG~AFQI~DDiLd~ 262 (380)
T 3lk5_A 185 TEVIGGQLLDIYLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGS--PQLIDALLHYGHDIGIAFQLRDDLLGV 262 (380)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678898899853 33458888888777777765 3444443 33222 223456788999999999999877776
Q ss_pred -----------HHHHhcCCCCCCHHHHHhcCC--Ch---h---hhhcccCCH-H---HHHH------HHHHHHHHHHHHH
Q 016696 265 -----------GEDASRGRIYLPQDELAKFGL--RD---E---DIFSRKVSD-E---WREF------MKEQITRARYFYK 315 (384)
Q Consensus 265 -----------~eD~~~GR~YLP~d~L~~~Gv--s~---e---dl~~~~~~~-~---~~~l------i~~~~~~A~~~l~ 315 (384)
+.|++.|++-+|.=..-+..- ++ + +++....++ . ++++ +.+....++.+.+
T Consensus 263 ~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~ 342 (380)
T 3lk5_A 263 FGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTE 342 (380)
T ss_dssp HSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 678999999998754333210 11 1 122222222 2 2222 3344456788899
Q ss_pred HHHHhhhhccc
Q 016696 316 LAEEGASELDK 326 (384)
Q Consensus 316 ~A~~~~~~Lp~ 326 (384)
+|...+..+|.
T Consensus 343 ~A~~~L~~lp~ 353 (380)
T 3lk5_A 343 SGLAHLDDVDI 353 (380)
T ss_dssp HHHHHGGGSCC
T ss_pred HHHHHHHhCCC
Confidence 99999888884
No 12
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=95.98 E-value=0.55 Score=45.05 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCCCCC---CchhHHhHHHHHHHHHHHHHHHHHHHhHH
Q 016696 191 RDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGMDPD---SSASAQSIYNAALYLGIGNQLTNILRDVG 265 (384)
Q Consensus 191 ~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~---~~~~~~~~~~~A~~LG~AlQLtNILRDv~ 265 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+++.+ ..-.. +....+.+...+.++|.|+|+.+=+-|+-
T Consensus 158 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~ 236 (313)
T 3lom_A 158 SGMVSGQSLDLSELAKSSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLY 236 (313)
T ss_dssp TTHHHHHHHHHHTTTSSCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCCCCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36889999998653 25689999888877778776666665 33211 22334567889999999999998777763
Q ss_pred HHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 266 EDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 266 eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
-|- +.+.|- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 237 gd~---------~~~GK~--~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 287 (313)
T 3lom_A 237 APT---------QILGKG--RSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSK 287 (313)
T ss_dssp CC--------------------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGG
T ss_pred CCH---------HhhCCC--CcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 221 111110 012333343332222234555667888899999999888875
No 13
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=95.97 E-value=0.3 Score=47.11 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhccC---C-CCCCHHHHHHHHHHhchHH-HHHHHhhh---CCCCCCchhHHhHHHHHHHHHHHHHHHHHH
Q 016696 190 FRDMIKGMRMDTEK---C-RYANFQELYLYCYYAGGTV-GLMSVPVM---GMDPDSSASAQSIYNAALYLGIGNQLTNIL 261 (384)
Q Consensus 190 ~~~lI~g~~~DL~~---~-~~~t~~dL~~Yc~~vAGtV-G~l~l~il---g~~~~~~~~~~~~~~~A~~LG~AlQLtNIL 261 (384)
..+|+.|...|+.. . .-.|++++..-++.-.|++ ..+.+.+. +..++. .. +.+.+.++|.|+|+.+=+
T Consensus 139 ~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~---~~-l~~~g~~lG~aFQi~DD~ 214 (330)
T 1wmw_A 139 VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPP---AA-YEEGGLRLGTAFQIVDDV 214 (330)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCC---HH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHH---HH-HHHHHHHHHHHHHHHHcc
Confidence 46899999999854 2 3568999888888888887 66666643 222222 12 788999999999999888
Q ss_pred HhH----------HHHHhcCCCCCCHHHHH
Q 016696 262 RDV----------GEDASRGRIYLPQDELA 281 (384)
Q Consensus 262 RDv----------~eD~~~GR~YLP~d~L~ 281 (384)
-|+ +.|++.|++-+|.=..-
T Consensus 215 ld~~~d~~~GK~~g~Dl~egK~T~p~i~al 244 (330)
T 1wmw_A 215 LNLEGGEAYGKERAGDLYEGKRTLILLRFL 244 (330)
T ss_dssp HHHSCSCCCSSSTTHHHHHTCCCHHHHHHH
T ss_pred CcccCCcccCCCcCchhhCCCCCHHHHHHH
Confidence 775 68999999999985433
No 14
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.44 Score=46.16 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
...+|+.|...|+... .-.|++++..-++.-.|++..+++.+... ...+....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 145 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 145 ASNELCEGQARDLEFEKKSTVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3478999999998532 23588998888888888887777665322 1112223456788999999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChhh---h---hcccC-------------CHHHH---HH------HHHH
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDED---I---FSRKV-------------SDEWR---EF------MKEQ 306 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l---~~~~~-------------~~~~~---~l------i~~~ 306 (384)
+.|+..|++-+|.=..-+.. ++++ + +.... .+.+. ++ +...
T Consensus 225 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~ 303 (342)
T 1wy0_A 225 ADEKKLGKPVGSDIRKGKKTLIVAHFFENA-DEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYA 303 (342)
T ss_dssp SCHHHHTSCSCHHHHHTCCCHHHHHHHHHC-CHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHH
T ss_pred CChhhhCCCchhHHhCCCCcHHHHHHHHhC-CHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHH
Confidence 47889999999986543332 2211 1 11111 11222 22 1233
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 016696 307 ITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 307 ~~~A~~~l~~A~~~~~~Lp~ 326 (384)
-+.++.+.++|...+..+|.
T Consensus 304 ~~~~~~~~~~A~~~L~~l~~ 323 (342)
T 1wy0_A 304 AEIAKDMIKKANEALRILPK 323 (342)
T ss_dssp HHHHHHHHHHHHTTGGGSCC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 45678888888888888874
No 15
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=95.94 E-value=0.19 Score=48.02 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhccC---CCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEK---CRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~---~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
.+.+|+.|.-.|+.. ..-.|++++..-+++-.|++..+.+.+...-.... +.+...+.++|.|+|+.+=+-|+
T Consensus 119 ~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~~---~~l~~~g~~lG~aFQi~DD~ld~~ 195 (301)
T 2q80_A 119 QLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYK---EDLKPLLNTLGLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC---SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456789999999853 23568999988888777777766666543211111 13578999999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChhhh---hc-ccCCHHHHH-H---------HHHHHHHHHHHHHHHHHh
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDEDI---FS-RKVSDEWRE-F---------MKEQITRARYFYKLAEEG 320 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~edl---~~-~~~~~~~~~-l---------i~~~~~~A~~~l~~A~~~ 320 (384)
+.|++.|++-+|.=..-+.+-....+ +. +..++.... + +...-+.++.+.++|...
T Consensus 196 ~~~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~ 275 (301)
T 2q80_A 196 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQ 275 (301)
T ss_dssp CC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhCCCccchhhcCCcHHHHHHHHHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 47899999999986544432111112 22 222333333 1 223345677888888888
Q ss_pred hhhccc
Q 016696 321 ASELDK 326 (384)
Q Consensus 321 ~~~Lp~ 326 (384)
+..+|.
T Consensus 276 L~~l~~ 281 (301)
T 2q80_A 276 IDARGG 281 (301)
T ss_dssp HHHTTC
T ss_pred HHcCCC
Confidence 877774
No 16
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=95.90 E-value=0.082 Score=51.15 Aligned_cols=126 Identities=16% Similarity=0.109 Sum_probs=78.7
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCCCC--CchhHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMDPD--SSASAQSIYNAALYLGIGNQLTNILRDVGED 267 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~--~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD 267 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+++.+...-.. +....+.+...+.++|.|+|+.+=+-|+--|
T Consensus 158 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d 237 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGKKLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESD 237 (324)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 36889999998653 35689999888888888887777765433222 2233456788999999999999877766322
Q ss_pred HhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 268 ASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 268 ~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
- +.+.|- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 238 ~---------~~~GK~--~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~ 286 (324)
T 3ts7_A 238 T---------QTLGKT--RGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGPE 286 (324)
T ss_dssp --------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCGG
T ss_pred H---------HHhCCC--ccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 1 111110 013344444333333335555677889999999999999875
No 17
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=95.79 E-value=0.039 Score=53.72 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhccCC-----CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHH
Q 016696 189 PFRDMIKGMRMDTEKC-----RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILR 262 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~-----~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILR 262 (384)
.+.+|+.|...|+... ...|++++..-+++-.|++..+.+.+... ...+. ..+.+...+.++|.|+|+.+=+-
T Consensus 139 ~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~l 217 (340)
T 2e8v_A 139 ELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYL 217 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999998531 24689999888888888877776665322 11111 13456789999999999998887
Q ss_pred hH-----------HHHHhcCCCCCCHHH
Q 016696 263 DV-----------GEDASRGRIYLPQDE 279 (384)
Q Consensus 263 Dv-----------~eD~~~GR~YLP~d~ 279 (384)
|+ +.|++.|++-+|.=.
T Consensus 218 d~~~~~~~~GK~~g~Dl~egK~Tlp~i~ 245 (340)
T 2e8v_A 218 NLKDFQMSSEKGFAEDITEGKLSFPIVH 245 (340)
T ss_dssp HHHC-----CCCTTHHHHTTCCCHHHHH
T ss_pred hccCChhhhCCCchhhHhcCCchHHHHH
Confidence 76 478899999999754
No 18
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=95.74 E-value=0.18 Score=48.20 Aligned_cols=125 Identities=14% Similarity=0.018 Sum_probs=73.2
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+... ...+....+.+.+.+.++|.|+|+.+=+-|+--|-
T Consensus 156 ~~~~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~ 235 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEKVSLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTE 235 (302)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 36889999998653 24688898887777777777666664322 11122334567889999999999998777763221
Q ss_pred hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 269 SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
+.+.+- .-+|+..|+.+=-+.-.+..--+.++.+.++|.+.+..+|.
T Consensus 236 ---------~~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~ 282 (302)
T 3p8l_A 236 ---------ADLGKK--VGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKIKA 282 (302)
T ss_dssp --------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHhCCC--hhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111110 12344455544333334555556677888888888887853
No 19
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=95.74 E-value=0.079 Score=50.75 Aligned_cols=125 Identities=15% Similarity=0.086 Sum_probs=78.1
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCCCC--CchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 192 DMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMDPD--SSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 192 ~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~--~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
+|+.|...|+... .-.|++++..-.+.-.|++..+++.+...-.. +....+.+.+.+.++|.|+|+.+=+-|+--|-
T Consensus 159 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~ 238 (302)
T 3p8r_A 159 GMCLGQALDLAAENRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDT 238 (302)
T ss_dssp THHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHhHHHHHHccCCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 6889999998653 35688888888877778777776665332211 11223567889999999999998666663221
Q ss_pred hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 269 SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
+.+.|- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 239 ---------~~~GK~--~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 286 (302)
T 3p8r_A 239 ---------ETLGKP--QGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIPYN 286 (302)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ---------HHhCCC--cchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 111110 124555555554444456666778899999999999999875
No 20
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=95.64 E-value=0.089 Score=50.89 Aligned_cols=127 Identities=18% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHHHHHHHhhccCCC--CCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 016696 191 RDMIKGMRMDTEKCR--YANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGED 267 (384)
Q Consensus 191 ~~lI~g~~~DL~~~~--~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD 267 (384)
.+|+.|...|+.... -.|++++..-.+.-.|++..+.+.+-.. ...+....+.+...+.++|.|+|+.+=+-|+--|
T Consensus 180 ~~m~~GQ~lDl~~~~~~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 259 (324)
T 3uca_A 180 DGMIGGQIVDIINEDKEEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGN 259 (324)
T ss_dssp TTHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHhHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 368899999986532 5688888887777777777666654322 1112223456788999999999999877776211
Q ss_pred HhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 268 ASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 268 ~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
- +.+.|- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|...
T Consensus 260 ~---------~~~GK~--~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~ 309 (324)
T 3uca_A 260 A---------KDLGKN--VHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGNT 309 (324)
T ss_dssp ----------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred H---------HHhCCC--cchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 0 111110 0123333433333333344556678888899998888898643
No 21
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=95.63 E-value=0.38 Score=47.20 Aligned_cols=134 Identities=13% Similarity=0.022 Sum_probs=82.3
Q ss_pred HHHHHHHHhhccCCC-------CCCHHHHHHHHHHhchHH-HHHHHhh---hCC-CCCCchhHHhHHHHHHHHHHHHHHH
Q 016696 191 RDMIKGMRMDTEKCR-------YANFQELYLYCYYAGGTV-GLMSVPV---MGM-DPDSSASAQSIYNAALYLGIGNQLT 258 (384)
Q Consensus 191 ~~lI~g~~~DL~~~~-------~~t~~dL~~Yc~~vAGtV-G~l~l~i---lg~-~~~~~~~~~~~~~~A~~LG~AlQLt 258 (384)
.+++.|...|+.... -.|++++..-+++=.|.+ ..+.+.+ ++. . +....+.+...+.++|.|+|+.
T Consensus 179 ~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~--~~~~~~~l~~~g~~lG~aFQI~ 256 (367)
T 1uby_A 179 YQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGID--SKEEHENAKAILLEMGEYFQIQ 256 (367)
T ss_dssp HHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999985422 358888888777777776 4444433 322 2 2223456788999999999999
Q ss_pred HHHHhHH----------HHHhcCCCCCCHHHHHhcCCChhh--hh----cccCCHHHH---HHHH------HHHHHHHHH
Q 016696 259 NILRDVG----------EDASRGRIYLPQDELAKFGLRDED--IF----SRKVSDEWR---EFMK------EQITRARYF 313 (384)
Q Consensus 259 NILRDv~----------eD~~~GR~YLP~d~L~~~Gvs~ed--l~----~~~~~~~~~---~li~------~~~~~A~~~ 313 (384)
+=+-|+- .|+..|++-+|.=..-+.. ++++ ++ .....+.+. +++. ..-..++.+
T Consensus 257 DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~ 335 (367)
T 1uby_A 257 DDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRV-TPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESS 335 (367)
T ss_dssp HHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhC-CHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 9888874 5778899988875433321 3221 11 111112222 2221 111347778
Q ss_pred HHHHHHhhhhcccc
Q 016696 314 YKLAEEGASELDKA 327 (384)
Q Consensus 314 l~~A~~~~~~Lp~~ 327 (384)
+++|...+..+|..
T Consensus 336 ~~~A~~~L~~lp~~ 349 (367)
T 1uby_A 336 YRRLQELIEKHSNR 349 (367)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCCc
Confidence 88888888877753
No 22
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=95.62 E-value=0.21 Score=47.72 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhccC-CCCCCHHHHHHHHHHhchHHHHHHHhhhC---CCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH
Q 016696 189 PFRDMIKGMRMDTEK-CRYANFQELYLYCYYAGGTVGLMSVPVMG---MDPDSSASAQSIYNAALYLGIGNQLTNILRDV 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~-~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg---~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv 264 (384)
...+|+.|...|+.. ....|++++..-++.-.|++..+.+.+.. ..++ +.+.+.+.++|.|+|+.+=+-|+
T Consensus 135 ~~~~~~~GQ~~dl~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-----~~l~~~g~~lG~aFQi~DD~lD~ 209 (299)
T 1v4e_A 135 VIGKMSEAELIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELG-----EDLYNLGVTIGTIYQMFDDIMDF 209 (299)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 346899999999853 12279999888888888887766665432 2221 45788999999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHH
Q 016696 265 ----------GEDASRGRIYLPQDE 279 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~ 279 (384)
+.|+..|++-+|.=.
T Consensus 210 ~~d~~~GK~~g~Dl~egK~T~p~l~ 234 (299)
T 1v4e_A 210 AGMEKIGKDGFLDLKNGVASFPLVT 234 (299)
T ss_dssp TTCCSCCTTSSCCCTTTTCCHHHHH
T ss_pred cCccccCCCcchHhhCCCchHHHHH
Confidence 456677888888743
No 23
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=95.60 E-value=0.086 Score=51.75 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 189 PFRDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
.+.+|+.|...|+... ...|++++..-++.-.|++..+++.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 168 ~~~~~~~GQ~ldl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 168 TFGELVTGQMRETVGPRDTDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4568999999998642 23778888877777788877776665322 1112223456788999999999999877776
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChh--h---hhcc-cCCHH-HHHH---------HHHHHHHHHHHHHHHHH
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDE--D---IFSR-KVSDE-WREF---------MKEQITRARYFYKLAEE 319 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~e--d---l~~~-~~~~~-~~~l---------i~~~~~~A~~~l~~A~~ 319 (384)
+.|++.|++-+|.=..-+.+ +++ . ++.+ ..++. +..+ +.+--..++.+.++|.+
T Consensus 248 d~~~~GK~~g~Dl~egK~Tlp~l~al~~~-~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~ 326 (360)
T 3lmd_A 248 ETHESGKTPGTDLREGVFTLPVLYALRED-TPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANA 326 (360)
T ss_dssp --------CCHHHHHTCCCHHHHHHHHCC-SHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhCCCchhHHhcCCchHHHHHHHHcC-CchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999986654442 221 1 2222 12222 2222 34445567889999999
Q ss_pred hhhhcccc
Q 016696 320 GASELDKA 327 (384)
Q Consensus 320 ~~~~Lp~~ 327 (384)
.+..+|..
T Consensus 327 ~L~~lp~~ 334 (360)
T 3lmd_A 327 ELDRLPDS 334 (360)
T ss_dssp HHTTSCCS
T ss_pred HHHhCCCc
Confidence 99888863
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=95.48 E-value=0.3 Score=47.44 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
...+|+.|...|+.. ..-.|++++..-+++-.|++..+++.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~~~GQ~~dl~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 147 ASAVIAEGEVLQLTAAQNLATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345799999999854 334688999888888888887777665332 1112223456788999999999999877775
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChh------hhhc-cc-CCHHHHHH---------HHHHHHHHHHHHHHH
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDE------DIFS-RK-VSDEWREF---------MKEQITRARYFYKLA 317 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~e------dl~~-~~-~~~~~~~l---------i~~~~~~A~~~l~~A 317 (384)
+.|+..|++-+|.=..-+.. +++ +++. +. ..+.+..+ +..--..++.+.++|
T Consensus 227 ~d~~~~GK~~g~Dl~egK~Tlp~i~al~~~-~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A 305 (341)
T 3mzv_A 227 GKSAEIGKNTGDDFRERKLTMPVIKAVALA-DEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTA 305 (341)
T ss_dssp ---------CCHHHHTTCCCHHHHHHHHTC-CHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCCCcccccCchhHHHHHHHHhC-CHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 56889999999976544332 221 1122 11 12223222 344456678899999
Q ss_pred HHhhhhcccc
Q 016696 318 EEGASELDKA 327 (384)
Q Consensus 318 ~~~~~~Lp~~ 327 (384)
.+.+..+|..
T Consensus 306 ~~~L~~lp~~ 315 (341)
T 3mzv_A 306 RKALAKLPDH 315 (341)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHhCCCC
Confidence 9998888853
No 25
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=95.46 E-value=0.12 Score=49.47 Aligned_cols=124 Identities=18% Similarity=0.109 Sum_probs=78.7
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCC-CchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 192 DMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPD-SSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 192 ~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~-~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
+|+.|...|+... ...|++++..-++.-.|++..+.+.+... ... +....+.+...+.++|.|+|+.+=+-|+--|-
T Consensus 153 ~~~~GQ~lDl~~~~~~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 232 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGLKLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDT 232 (304)
T ss_dssp THHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 5889999998642 34788998888887778877776664322 111 22234567889999999999998888875442
Q ss_pred -hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 269 -SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 269 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
..|+- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|..
T Consensus 233 ~~~GK~------------~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~ 280 (304)
T 3lsn_A 233 ATLGKR------------QGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAA 280 (304)
T ss_dssp HHC------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHhCCC------------cccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 22220 124555555554443345566677889999999999989873
No 26
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=95.41 E-value=1.9 Score=40.93 Aligned_cols=198 Identities=13% Similarity=0.149 Sum_probs=118.0
Q ss_pred hHHHhcCChhh---hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC-C--CCHHHHHHHHHHHhcC-
Q 016696 112 YLGTLLLTKER---QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH-P--NDILDAALTDTVSKFN- 184 (384)
Q Consensus 112 yla~~~lP~~~---R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~-p--~~Pv~~aL~~~v~~~~- 184 (384)
.+++.+.|... ...+.-+.+|.-.+||+-|.... .....+..+.+++.+...|. | .+|+..+|.++..+..
T Consensus 52 ~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~--~~~ee~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~ 129 (337)
T 1ps1_A 52 DLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRG--ENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCE 129 (337)
T ss_dssp HHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGG--GCHHHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCC--CCHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhc
Confidence 34556667633 33455567777888999997521 12455677777888777665 2 3688888988887542
Q ss_pred -CCh-------HHHHHHHHHHHhhcc---CCCCC-CHHHHHHHHHHhchHHHHHHHhhh--CCC-CCCchhHHhHHHHHH
Q 016696 185 -LHI-------KPFRDMIKGMRMDTE---KCRYA-NFQELYLYCYYAGGTVGLMSVPVM--GMD-PDSSASAQSIYNAAL 249 (384)
Q Consensus 185 -L~~-------~~~~~lI~g~~~DL~---~~~~~-t~~dL~~Yc~~vAGtVG~l~l~il--g~~-~~~~~~~~~~~~~A~ 249 (384)
.+. +.+.+++++...... ...++ |++|...+-..+.|.--.+.+-.+ |.. ++.............
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~ 209 (337)
T 1ps1_A 130 GMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQ 209 (337)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHH
Confidence 333 334555566555432 24577 999998888888876554444333 432 111001122334555
Q ss_pred HHHHHHHHHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016696 250 YLGIGNQLTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEG 320 (384)
Q Consensus 250 ~LG~AlQLtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~ 320 (384)
..+....|+|=|-.......+|-+ -.-.-.+.++|+|.++ ..+.+.++++.+.+.+.+....
T Consensus 210 ~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~ee---------A~~~v~~~i~~~~~~~~~~~~~ 272 (337)
T 1ps1_A 210 IAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSR---------SVSHMQNEVRARLEQYLLLESC 272 (337)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777778863 3334578889998876 4445666666666666665543
No 27
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=95.37 E-value=0.21 Score=48.48 Aligned_cols=136 Identities=11% Similarity=0.044 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH-
Q 016696 189 PFRDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv- 264 (384)
.+.+|+.|...|+... .-.|++++..-++.-.|++..+++.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 151 ~~~~~~~Gq~~dl~~~~~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~ 230 (334)
T 3pko_A 151 AMHRILQGELHQMDLNYREDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567899988888642 35688887777777777777666654322 1112223456778999999999999876664
Q ss_pred ----------HHHHhcCCCCCCHHHHHhcCCChhh---hh--cccCCHH-HH---HH------HHHHHHHHHHHHHHHHH
Q 016696 265 ----------GEDASRGRIYLPQDELAKFGLRDED---IF--SRKVSDE-WR---EF------MKEQITRARYFYKLAEE 319 (384)
Q Consensus 265 ----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~--~~~~~~~-~~---~l------i~~~~~~A~~~l~~A~~ 319 (384)
+.|+..|++-+|.=..-+.. +++ ++ ++..++. +. ++ +..--+.++.+.++|.+
T Consensus 231 ~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~--~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~ 308 (334)
T 3pko_A 231 GDPKRTQKPVLEDLRSGVYSLPLLLSLSHA--PRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALT 308 (334)
T ss_dssp SCTTSCCHHHHHHHHTTCCCHHHHHHGGGS--HHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CChhhcCCCCCCccccCchhHHHHHHHHhC--cHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 68999999999976544322 112 12 1122222 22 22 22344567888888888
Q ss_pred hhhhccc
Q 016696 320 GASELDK 326 (384)
Q Consensus 320 ~~~~Lp~ 326 (384)
.+..+|.
T Consensus 309 ~L~~lp~ 315 (334)
T 3pko_A 309 LIQQLPV 315 (334)
T ss_dssp HHTTSCS
T ss_pred HHHhCCC
Confidence 8888876
No 28
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=95.35 E-value=0.26 Score=47.45 Aligned_cols=138 Identities=14% Similarity=0.080 Sum_probs=87.6
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 190 FRDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGMD-PDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
..+|+.|...|+... .-.|++++..-++.-.|++..+.+.+...- ..+....+.+.+.+.++|.|+|+.+=+-|+
T Consensus 139 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 139 ILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcccCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 458999999999642 246899988888888888877777654321 122223456788999999999999877775
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcC-CChh-------hhhcc-cCCHHHH---HHHH-----HHHHHHHHHHHHHH
Q 016696 265 ---------GEDASRGRIYLPQDELAKFG-LRDE-------DIFSR-KVSDEWR---EFMK-----EQITRARYFYKLAE 318 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~G-vs~e-------dl~~~-~~~~~~~---~li~-----~~~~~A~~~l~~A~ 318 (384)
+.|+..|++-+|.=..-+.. -... +++.. ...+.+. +++. ..-..++.+.++|.
T Consensus 219 ~~~~~GK~~g~Dl~~gk~T~p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~ 298 (325)
T 3aqb_B 219 DEATLGKPVGSDIRNGHITYPLMAAIANLKEQDDDKLEAVVKHLTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAK 298 (325)
T ss_dssp CHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHTTCCHHHHHHHTCCTTCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCccchHhhCCCccHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999975432211 0011 22211 1112222 2222 22355677888888
Q ss_pred Hhhhhcccc
Q 016696 319 EGASELDKA 327 (384)
Q Consensus 319 ~~~~~Lp~~ 327 (384)
..+..+|..
T Consensus 299 ~~L~~lp~~ 307 (325)
T 3aqb_B 299 YHLSQLQDS 307 (325)
T ss_dssp HHHHTSCCC
T ss_pred HHHHhCCCc
Confidence 888877753
No 29
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=95.31 E-value=1 Score=44.54 Aligned_cols=136 Identities=13% Similarity=0.101 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhcc------------------CC----C----CCCHHHHHHHHHHhchHH-HHHHH---hhhCCCCCCch
Q 016696 190 FRDMIKGMRMDTE------------------KC----R----YANFQELYLYCYYAGGTV-GLMSV---PVMGMDPDSSA 239 (384)
Q Consensus 190 ~~~lI~g~~~DL~------------------~~----~----~~t~~dL~~Yc~~vAGtV-G~l~l---~ilg~~~~~~~ 239 (384)
..+++.|...|+. .. . -.|++++..-+++-.|.+ ..+.+ .+++..++...
T Consensus 187 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 266 (395)
T 2ihi_A 187 TLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNL 266 (395)
T ss_dssp HHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCT
T ss_pred HHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhH
Confidence 3688999999992 11 1 357888877666666664 22222 23433222110
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhH----------HHHHhcCCCCCCHHHHHhcCCChhh---h---hcccCCHHHHH--
Q 016696 240 SAQSIYNAALYLGIGNQLTNILRDV----------GEDASRGRIYLPQDELAKFGLRDED---I---FSRKVSDEWRE-- 301 (384)
Q Consensus 240 ~~~~~~~~A~~LG~AlQLtNILRDv----------~eD~~~GR~YLP~d~L~~~Gvs~ed---l---~~~~~~~~~~~-- 301 (384)
..+.+...+.++|.|+|+.+=+-|+ +.|+..|++-+|.=..-+. .++++ | +.....+.+..
T Consensus 267 ~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~-~~~~~~~~L~~~~~~~~~~~~~~v~ 345 (395)
T 2ihi_A 267 IYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFEL-CSEPDKIKIVKNYGKNNLACVKVID 345 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHH-CCHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHh-CCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0356788999999999999877776 5688899998887544332 22221 2 11111122221
Q ss_pred -------HHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 302 -------FMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 302 -------li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
.+....+.++.++++|...+..+|.
T Consensus 346 ~l~~~~g~~~~~~~~~~~~~~~A~~~L~~lp~ 377 (395)
T 2ihi_A 346 SLYEQYKIRKHYESYEKAQKAKILSAINELHH 377 (395)
T ss_dssp HC----CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1334445677888888888888876
No 30
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=95.31 E-value=0.14 Score=48.98 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+... ...+....+.+...+.++|.|+|+.+=+-|+--|-
T Consensus 148 ~~~~~GQ~~Dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 227 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQPIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDE 227 (301)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46889999998642 25689999988888888887776664322 11122334567889999999999998887875543
Q ss_pred -hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 269 -SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 269 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
..|+- .-+|+..|+.+=-+.-.+..--+.|+.+.++|.+.+..+|.
T Consensus 228 ~~~GK~------------~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~ 274 (301)
T 1rtr_A 228 AKLGKK------------VGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQIDE 274 (301)
T ss_dssp CC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHhCCC------------cchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11210 01455555555444444556667888999999999988874
No 31
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=95.28 E-value=0.29 Score=47.68 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhccCC--CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 190 FRDMIKGMRMDTEKC--RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~--~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
+.+|+.|...|+... .-.|++++..-.+.-.|++..+++.+... ...+....+.+...+.++|.|+|+.+=+-|+
T Consensus 160 ~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 160 SRVIAEGEVLQLMRSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHTSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 457999999998653 34689999888888888887777665322 1112223456788999999999999877664
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChh-hh----hcc-c----CCHHHHHH------HHHHHHHHHHHHHHHHH
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDE-DI----FSR-K----VSDEWREF------MKEQITRARYFYKLAEE 319 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~e-dl----~~~-~----~~~~~~~l------i~~~~~~A~~~l~~A~~ 319 (384)
+.|++.|++-+|.=..-+.+-..+ +. +.. . .-..+.++ +.+-.+.++.+.++|.+
T Consensus 240 d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~ 319 (345)
T 3oyr_A 240 ATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKA 319 (345)
T ss_dssp -----------------CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 578899999999765544321111 11 111 1 11223333 34455678899999999
Q ss_pred hhhhcccc
Q 016696 320 GASELDKA 327 (384)
Q Consensus 320 ~~~~Lp~~ 327 (384)
.+..+|..
T Consensus 320 ~L~~lp~~ 327 (345)
T 3oyr_A 320 ALAMFPAN 327 (345)
T ss_dssp TTTTSCSS
T ss_pred HHHhCCCc
Confidence 99988863
No 32
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=95.13 E-value=2.1 Score=39.82 Aligned_cols=192 Identities=13% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHhcCCh---hhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC--C--CCHHHHHHHHHHHhcC-
Q 016696 113 LGTLLLTK---ERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH--P--NDILDAALTDTVSKFN- 184 (384)
Q Consensus 113 la~~~lP~---~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~--p--~~Pv~~aL~~~v~~~~- 184 (384)
+++.+.|. ++...+.-+.+|.-.+||+-|... ...+..+.+.+.+...|. | ..|+..+|.++.++..
T Consensus 49 ~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~~~-----~~e~~~~~~~~~~~~~~~~lp~~~~~~~~~l~d~~~~~~~ 123 (300)
T 1di1_A 49 VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEHMS-----FADGEAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRA 123 (300)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHHSC-----HHHHHHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHhccccCC-----HHHHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHh
Confidence 44556665 333356677788888999999832 223444555565555443 3 3688888877766542
Q ss_pred -CC---hHHHHHHHHHHHh--hccCCCCCCHHHHHHHHHHhchHHHHHHHhh--hCCCCCCchhHHhHHHHHHHHHHHHH
Q 016696 185 -LH---IKPFRDMIKGMRM--DTEKCRYANFQELYLYCYYAGGTVGLMSVPV--MGMDPDSSASAQSIYNAALYLGIGNQ 256 (384)
Q Consensus 185 -L~---~~~~~~lI~g~~~--DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~i--lg~~~~~~~~~~~~~~~A~~LG~AlQ 256 (384)
.+ ++.+..++.++.. +.....++|++|...+-..+.|.--.+.+-. +|..- .....+.........+....
T Consensus 124 ~~~~~~~~~~~~~~~~~~ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l-~~e~~~~~~~l~~~~~~~~~ 202 (300)
T 1di1_A 124 HDAELANEVLEPTFVFMRAQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRL-SADELQDMKALEANCAKQLS 202 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCC-CHHHHHTTHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 11 1224445555532 2223568899999988877777543333332 34321 11111223334444444555
Q ss_pred HHHHHHhHHHHHhcCC---------CCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGR---------IYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEE 319 (384)
Q Consensus 257 LtNILRDv~eD~~~GR---------~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~ 319 (384)
|+|=|-.......+|- .-.-.=.+.++|++.++ ..+.+..+++.+.+.+.+..+
T Consensus 203 l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~~~~ 265 (300)
T 1di1_A 203 VVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIPA---------TKRVLWSMTREWETVHDEIVA 265 (300)
T ss_dssp HHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 5543333333334444 12334567788888766 445666777777666666554
No 33
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=94.99 E-value=0.28 Score=47.99 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhccCC------------C--CCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHH
Q 016696 190 FRDMIKGMRMDTEKC------------R--YANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIG 254 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~------------~--~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~A 254 (384)
+.+|+.|...|+... . -.|++++..-++.-.|++..+++.+... ...+....+.+...+.++|.|
T Consensus 141 ~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~a 220 (358)
T 4dhd_A 141 IKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVA 220 (358)
T ss_dssp HHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 457999999998653 2 4589999888888888887776665332 111222345677899999999
Q ss_pred HHHHHHHHhH-----------HHHHhcCCC-CCCHHHHHhcCCChhh---h---h-cccCCH-HHHH---H------HHH
Q 016696 255 NQLTNILRDV-----------GEDASRGRI-YLPQDELAKFGLRDED---I---F-SRKVSD-EWRE---F------MKE 305 (384)
Q Consensus 255 lQLtNILRDv-----------~eD~~~GR~-YLP~d~L~~~Gvs~ed---l---~-~~~~~~-~~~~---l------i~~ 305 (384)
+|+.+=+-|+ +.|++.|++ -+|.=..-+.. ++++ | + ++..++ .+.. + +..
T Consensus 221 FQI~DD~lD~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~ 299 (358)
T 4dhd_A 221 FQIIDDVLDIYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHL-GEGERRRLLEILAREVVEEADVREAVALLDSVGAREE 299 (358)
T ss_dssp HHHHHHHHHHHC-------CTTHHHHTTBSCSHHHHHHHHHS-CHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHhcCChhhcCCCchhhHhcCChhhHHHHHHHHhC-ChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHH
Confidence 9999877765 578999999 88875544332 2211 1 1 122222 2222 2 223
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 016696 306 QITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 306 ~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
--+.++.+.++|.+.+..+|.
T Consensus 300 a~~~a~~~~~~A~~~L~~lp~ 320 (358)
T 4dhd_A 300 ALRLAARYREEAERHLAKIPN 320 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 456788999999999999984
No 34
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=94.78 E-value=0.29 Score=47.08 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccC--CCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH--
Q 016696 189 PFRDMIKGMRMDTEK--CRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV-- 264 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~--~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv-- 264 (384)
.+.+|+.|.-.|+.. ..-.|++++..-+++-.|++..+.+.+...-.... .+.+...+.++|.|+|+.+=+-|+
T Consensus 130 ~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~~~l~~~g~~lG~aFQI~DD~ld~~~ 207 (315)
T 3tc1_A 130 AVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--AKIYADFGLNFGMAFQIIDDLLDITQ 207 (315)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 356889999999854 23568888888777777887777666532211111 356788999999999999988886
Q ss_pred ---------HHHHhcCCCCCCHHHHHhcCCChhh---h---hcccCCHHHHHH---------HHHHHHHHHHHHHHHHHh
Q 016696 265 ---------GEDASRGRIYLPQDELAKFGLRDED---I---FSRKVSDEWREF---------MKEQITRARYFYKLAEEG 320 (384)
Q Consensus 265 ---------~eD~~~GR~YLP~d~L~~~Gvs~ed---l---~~~~~~~~~~~l---------i~~~~~~A~~~l~~A~~~ 320 (384)
+.|+..|++-+|.=..-+.. ++++ | +.....+.+..+ +..-...++.+.++|.+.
T Consensus 208 d~~~~GK~~g~Dl~egK~T~p~i~al~~~-~~~~~~~L~~~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~ 286 (315)
T 3tc1_A 208 DAKTLGKPNFSDFKEGKTTLPYLLLYEKL-NQHDQGLLISYFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEA 286 (315)
T ss_dssp CTTCCCCCCCCTGGGTCCCHHHHHHHTTS-CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHhCCChhhHHHcCChhHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 66889999999976544432 3221 2 222222222222 333444678888889888
Q ss_pred hhhccc
Q 016696 321 ASELDK 326 (384)
Q Consensus 321 ~~~Lp~ 326 (384)
+..+|.
T Consensus 287 L~~lp~ 292 (315)
T 3tc1_A 287 IKGENN 292 (315)
T ss_dssp TTTTCC
T ss_pred HHhCCC
Confidence 888875
No 35
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=94.69 E-value=0.43 Score=46.63 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhccCC--------------C----CCCHHHHHHHHHHhchHH-HHHHHhh---hCC-CCCCchhHHhHHH
Q 016696 190 FRDMIKGMRMDTEKC--------------R----YANFQELYLYCYYAGGTV-GLMSVPV---MGM-DPDSSASAQSIYN 246 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~--------------~----~~t~~dL~~Yc~~vAGtV-G~l~l~i---lg~-~~~~~~~~~~~~~ 246 (384)
..+++.|...|+... . -.|++++..-+++=.|++ ..+.+.+ ++. .+ ....+.+..
T Consensus 160 ~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~--~~~~~~l~~ 237 (362)
T 1yhl_A 160 DYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAA--SVEMNLVER 237 (362)
T ss_dssp HHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG--GSCHHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence 358999999999765 2 258888888888877777 5555543 332 22 122356788
Q ss_pred HHHHHHHHHHHHHHHHhHH----------HHHhcCCCCCCHHHHHhcCCChhh---h---hcccCCHH---HHHHHH---
Q 016696 247 AALYLGIGNQLTNILRDVG----------EDASRGRIYLPQDELAKFGLRDED---I---FSRKVSDE---WREFMK--- 304 (384)
Q Consensus 247 ~A~~LG~AlQLtNILRDv~----------eD~~~GR~YLP~d~L~~~Gvs~ed---l---~~~~~~~~---~~~li~--- 304 (384)
.+.++|.|+|+.+=+-|+- .|++.|++-+|.=..-+.. ++++ | +.....+. +++++.
T Consensus 238 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g 316 (362)
T 1yhl_A 238 VAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA-NAAQVAEFKANYGDKDPAKVAVVKRLYSEAN 316 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC-CHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Confidence 9999999999998888874 5778899988875433322 2221 2 21111122 222221
Q ss_pred ---HHHHHHHHHHHHHHHhhhhcccc
Q 016696 305 ---EQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 305 ---~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
.....++.++++|...+..+|..
T Consensus 317 ~~~~~~~~~~~~~~~A~~~L~~lp~~ 342 (362)
T 1yhl_A 317 LQADFAAYEAEVVREVESLIEQLKVK 342 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22345677777787777777754
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=94.63 E-value=0.32 Score=46.31 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHH-
Q 016696 190 FRDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGE- 266 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~e- 266 (384)
..+|+.|...|+... ...|.+++..-.+.-.|++..+.+.+... ...+....+.+...+.++|.|+|+.+=+-|+--
T Consensus 136 ~~~~~~GQ~~dl~~~~~~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~ 215 (295)
T 3ipi_A 136 GMDMAEGEVLDLKLEDESFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEV 215 (295)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999998653 23577777777777778877766664322 122222345678899999999999987777744
Q ss_pred ----HHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 267 ----DASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 267 ----D~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
|...|.+-+|.=...+. +. ...+..--+.|+.+.++|.+.+..+|..
T Consensus 216 ~~gkd~~~gk~Tlp~l~al~~--~~------------~~~le~a~~~a~~~~~~A~~~L~~lp~~ 266 (295)
T 3ipi_A 216 VEGKESKFTSETLPHIYMKST--SK------------EEALKKSIDCVKLHVAAAKETLETFREC 266 (295)
T ss_dssp HHC-------CCHHHHHTTTS--CH------------HHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccCCCcccCcccHHHHHHHhc--Cc------------hhHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44556666665332211 11 1235666677889999999999888753
No 37
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=94.58 E-value=0.16 Score=49.27 Aligned_cols=124 Identities=15% Similarity=0.035 Sum_probs=74.7
Q ss_pred HHHHHHHHhhccC-CCCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 191 RDMIKGMRMDTEK-CRYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 191 ~~lI~g~~~DL~~-~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.+|+.|...|+.. ..-.|++++..-.+.-.|++..+.+.+... ...+....+.+.+.+.++|.|+|+.+=+-|+--|-
T Consensus 192 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~ 271 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKKAPDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADA 271 (335)
T ss_dssp TSHHHHHHHHHHHHHSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4688888888853 125689999988888888887666664322 11122234567889999999999998777763221
Q ss_pred -hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 269 -SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 269 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
..|+ - .-+|+..|+.+=-+.-.+..--+.++.+.++|.+.+..+|.
T Consensus 272 ~~~GK----------~--~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~~ 318 (335)
T 2h8o_A 272 ATMGK----------A--TGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYGE 318 (335)
T ss_dssp --------------------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGGG
T ss_pred HHhCC----------C--cchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 0111 0 01233333333322223455667788888999988888875
No 38
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=94.24 E-value=1.1 Score=44.21 Aligned_cols=137 Identities=10% Similarity=0.020 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhccCC------------------CCCCHHHHHHHHHHhchHH-HHHHHhh---hCCCCCCchhHHhHHHH
Q 016696 190 FRDMIKGMRMDTEKC------------------RYANFQELYLYCYYAGGTV-GLMSVPV---MGMDPDSSASAQSIYNA 247 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~------------------~~~t~~dL~~Yc~~vAGtV-G~l~l~i---lg~~~~~~~~~~~~~~~ 247 (384)
..+++.|...|+... .-.|++++..-+++=.|.+ ..+.+.+ ++..++. ...+.+...
T Consensus 188 ~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~-~~~~~l~~~ 266 (390)
T 3dyh_A 188 DYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPT-VDMGVTEEL 266 (390)
T ss_dssp HHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGG-SCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChH-HHHHHHHHH
Confidence 357889999999651 1358888888777777775 4444432 3322111 013457889
Q ss_pred HHHHHHHHHHHHHHHhHH----------HHHhcCCCCCCHHHHHhcCCChhh---h---hcccCCHHH---HHH------
Q 016696 248 ALYLGIGNQLTNILRDVG----------EDASRGRIYLPQDELAKFGLRDED---I---FSRKVSDEW---REF------ 302 (384)
Q Consensus 248 A~~LG~AlQLtNILRDv~----------eD~~~GR~YLP~d~L~~~Gvs~ed---l---~~~~~~~~~---~~l------ 302 (384)
+.++|.|+|+.+=+-|+- .|++.|++-+|.=..-+.. ++++ | +.....+.+ +++
T Consensus 267 g~~lGlaFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~pvi~al~~~-~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~ 345 (390)
T 3dyh_A 267 AMLMGEYFQVQDDVMDCFTPPERLGKVGTDIQDAKCSWLAVTFLAKA-SSAQVAEFKANYGSGDSEKVATVRRLYEEADL 345 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHHHC-CHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHhCCCcchhhcCCccHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCc
Confidence 999999999999888873 4888999988865443332 3322 2 222222222 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 303 MKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 303 i~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
+......++.+++++.+.+..||...
T Consensus 346 ~~~~~~~~~~~~~~a~~~i~~l~~~~ 371 (390)
T 3dyh_A 346 QGDYVAYEAAVAEQVKELIEKLRLCS 371 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 22233345677778888877776643
No 39
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=93.17 E-value=0.34 Score=46.15 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCCC-CC-CchhHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGMD-PD-SSASAQSIYNAALYLGIGNQLTNILRDVGED 267 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~-~~-~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD 267 (384)
.+|+.|...|+... ...|++++..-.+.-.|++..+.+.+...- .. +....+.+.+.+.++|.|+|+.+=+-|+--|
T Consensus 152 ~~~~~GQ~~dl~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp TTHHHHHHHHHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHhHHHHHhccCCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 37889999998642 256889988888887888777766653322 11 1123356778899999999999877776432
Q ss_pred H-hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 268 A-SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 268 ~-~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
- ..|+- .-+|+..|+.+=-+.-.+..--..++.+.++|.+.+..+|.
T Consensus 232 ~~~~GK~------------~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~l~~ 279 (299)
T 1rqj_A 232 TATLGKR------------QGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAE 279 (299)
T ss_dssp HHHHSSC------------TTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCC------------hhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 11110 01233333333222222334456677888888888877765
No 40
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=93.14 E-value=3.7 Score=42.32 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhc--------CCC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFN----GHPN--DILDAALTDTVSKF--------NLH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~----g~p~--~Pv~~aL~~~v~~~--------~L~-- 186 (384)
|-.+.-+.+|.-.+||+-|.... ...++-+-+++++.-. .-|. .++..+|.+++++. +-.
T Consensus 288 Rl~~aK~~~l~tviDD~yD~~gt----~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~ 363 (549)
T 1n1b_A 288 RKMAATIIVLATVIDDIYDVYGT----LDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCL 363 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 44555555666778999987542 3455556566653211 1132 35666777766543 211
Q ss_pred ---hHHHHHHHHHHHhh---ccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCch-h-HH---hHHHHHHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMD---TEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSA-S-AQ---SIYNAALYLGIGN 255 (384)
Q Consensus 187 ---~~~~~~lI~g~~~D---L~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~-~-~~---~~~~~A~~LG~Al 255 (384)
++.+.++++++... ......+|++|.......+.|.--.++...++..+.... . .+ .........+..+
T Consensus 364 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~ 443 (549)
T 1n1b_A 364 QYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIIL 443 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHH
Confidence 34456667766533 234567899999999988887665555555554332111 0 00 0112333334444
Q ss_pred HHHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 016696 256 QLTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAE 318 (384)
Q Consensus 256 QLtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~ 318 (384)
-|.|=|........+|.+ -.=.-.|.++|+|.++ ..+-+..+++.+.+-+.+..
T Consensus 444 RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~ee---------A~~~i~~~i~~~wk~ln~e~ 498 (549)
T 1n1b_A 444 RLPDDLGTSYFELARGDVPKTIQCYMKETNASEEE---------AVEHVKFLIREAWKDMNTAI 498 (549)
T ss_dssp HHHHHHC---------CCCCHHHHHHHHHCCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456653 1112468889998876 45567778888877777643
No 41
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=93.08 E-value=0.082 Score=50.50 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=70.4
Q ss_pred HHHHHHHHhhccCC---CCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH---
Q 016696 191 RDMIKGMRMDTEKC---RYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV--- 264 (384)
Q Consensus 191 ~~lI~g~~~DL~~~---~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv--- 264 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+...-..... +.+.+.+.++|.|+|+.+=+-|+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~--~~l~~~g~~lG~aFQI~DDilD~~~~ 224 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAGADR--GPLTAYATALGLAFQIADDILDVEGN 224 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHTTCC-----
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 36889999998543 35689999888888888877666654322100111 15788999999999998644444
Q ss_pred --------HHHHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 016696 265 --------GEDASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKAS 328 (384)
Q Consensus 265 --------~eD~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~ 328 (384)
+.|+..|++-+|.= -.+..--+.++.+.++|.+.+..+|...
T Consensus 225 ~~~~GK~~g~Dl~~gK~T~p~l----------------------~~l~~a~~~~~~~~~~A~~~L~~~~~~~ 274 (297)
T 3m0g_A 225 EEAAGKRLGKDAEAHKATFVSL----------------------LGLAGAKSRAADLVAEAEAALAPYGEAA 274 (297)
T ss_dssp ----------------CCHHHH----------------------HCSSHHHHHHHHHHHHHHHHTGGGGGGG
T ss_pred HHHhCCCccchhhcCCccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 44555555555543 2233344567788888888888888753
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=93.01 E-value=0.9 Score=43.06 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=69.9
Q ss_pred HHHHHHHhhccCCC----CCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 016696 192 DMIKGMRMDTEKCR----YANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGE 266 (384)
Q Consensus 192 ~lI~g~~~DL~~~~----~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~e 266 (384)
+|+.|...|+.... -.|++++..-++.-.|++..+.+.+... ...+....+.+.+.+.++|.|+|+.+=+-|+-.
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~ 240 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 58899999997532 1345555555566667766665554321 111222345678899999999999987777765
Q ss_pred HHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 016696 267 DASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASR 329 (384)
Q Consensus 267 D~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r 329 (384)
|. +.-+|.= -.+..--+.|+.+.++|.+.+..+|...+
T Consensus 241 ~~---K~T~p~l----------------------~gle~a~~~a~~~~~~A~~~L~~l~~~~~ 278 (293)
T 2j1p_A 241 SS---KLTYPKL----------------------MGLEKSREFAEKLNTEARDQLLGFDSDKV 278 (293)
T ss_dssp -----CCCHHHH----------------------HHHHHHHHHHHHHHHHHHHHTTTSCTTTT
T ss_pred Cc---cccHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 53 3333321 13445556678888999988888874444
No 43
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=92.59 E-value=0.97 Score=43.27 Aligned_cols=124 Identities=14% Similarity=0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+... ...+....+.+...+.++|.|+|+.+=+-|+--|-
T Consensus 155 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 234 (309)
T 3pde_A 155 SGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSP 234 (309)
T ss_dssp TTHHHHHHHHHHTTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHhHHHHHHccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 36888999998653 24588998887777778777666654321 11122234567889999999999998777764331
Q ss_pred hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 016696 269 SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELD 325 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp 325 (384)
+.+.|- .-+|+..|+.+=-+.-.+..--..++.++++|...+..+|
T Consensus 235 ---------~~~GK~--~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~~ 280 (309)
T 3pde_A 235 ---------AEMGKA--TQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLP 280 (309)
T ss_dssp ---------------------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ---------HHhCCC--ccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 111110 1245555555544444445555667777788877776643
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=92.23 E-value=1.4 Score=41.75 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=74.6
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTNILRDVGEDA 268 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~eD~ 268 (384)
.+|+.|...|+... .-.|++++..-.+.-.|++..+.+.+-.. ...+....+.+.+.+.++|.|+|+.+=+-|+--|-
T Consensus 145 ~~~~~GQ~lDl~~~~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~ 224 (291)
T 3npk_A 145 NGMVIGQAIDCFFEDKRLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQ 224 (291)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 46889999998642 35688998888888888877766664221 11122234567889999999999998777776553
Q ss_pred -hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 269 -SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 269 -~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
..|+-. |. | .|+.+=-+.-.+..--..++.++++|.+.+..++..
T Consensus 225 ~~~GK~~---------~~---d--~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~~~ 270 (291)
T 3npk_A 225 EQSGKPT---------NN---D--IHKNSFVNLLGLEQAIKTKENLLNECEQDLEKLNEK 270 (291)
T ss_dssp ---------------------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCcc---------ch---h--cCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhchh
Confidence 233221 11 1 344443333344444566778888888888877664
No 45
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=91.48 E-value=2.6 Score=39.68 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhccC--CC-CCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 016696 190 FRDMIKGMRMDTEK--CR-YANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDVGE 266 (384)
Q Consensus 190 ~~~lI~g~~~DL~~--~~-~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~e 266 (384)
..+|+.|...|+.. .. -.|++++..-.+.-.|++..+.+.+...-...... .+.+.+.++|.|+|+.+=+-|+--
T Consensus 143 ~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~--~l~~~g~~lG~aFQI~DD~lD~~~ 220 (284)
T 2ftz_A 143 AYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT--XMXLLGEXFGVAFQIYDDLXDILG 220 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh--HHHHHHHHHHHHHHHHHhhhhhcC
Confidence 36899999999853 22 56899999988888888877766643221001111 578899999999999987777765
Q ss_pred HH-hcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 267 DA-SRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 267 D~-~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
|- ..|+-. -+|+. +.+=-+.-.+..--+.++.+.++|.+.+..+|.
T Consensus 221 d~~~~GK~~------------g~Dl~--K~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~ 267 (284)
T 2ftz_A 221 SFEKVGKDL------------GKDTE--XVTLVXXVGIQXAREMADXYYEEVLXGIESEGL 267 (284)
T ss_dssp HCCCC-------------------------CHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHhhCCCc------------chhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 53 223210 01221 111111122444556778888888888888874
No 46
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=91.45 E-value=1.3 Score=41.92 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhh---hCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhHHH
Q 016696 190 FRDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPV---MGMDPDSSASAQSIYNAALYLGIGNQLTNILRDVGE 266 (384)
Q Consensus 190 ~~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~i---lg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv~e 266 (384)
..+|+.|...|+.. .+++....+.-.|++..+.+.+ ++ .+ ....+.+.+.+.++|.|+|+.+=+-|+--
T Consensus 144 ~~~~~~GQ~~dl~~-----~~~y~~~i~~KTa~L~~~a~~~ga~la-~~--~~~~~~l~~~g~~lG~aFQi~DDilD~~~ 215 (289)
T 2azj_A 144 WKDTSVGALRDMYD-----NSDYIRTIELKTGSLFKLSTVLSAYAS-KH--YNTKQQMLDVGKYLGIIYQVIDDFVDYKT 215 (289)
T ss_dssp HHHHHHHHHHTTTT-----TSCHHHHHHHHTHHHHHHHHHHHHHHT-TC--GGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh-----HHHHHHHHHcchHHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 46899999999974 4555566666667766555553 34 22 22345678899999999999987777643
Q ss_pred ----HHhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 016696 267 ----DASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDK 326 (384)
Q Consensus 267 ----D~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~ 326 (384)
|+..|.+-+|.=. .+.| ....+ -..|+.+.++|.+.+..+|.
T Consensus 216 ~~K~dl~~gk~Tlp~l~-~~~g--------------~~~a~---~~~a~~~~~~A~~~L~~lp~ 261 (289)
T 2azj_A 216 KKVEEIDGSAKQLFKYY-REGK--------------LEEYV---RSVYLEYKQKYDELISNIPF 261 (289)
T ss_dssp SCTTTCCTTGGGGHHHH-TTTC--------------HHHHH---HHHHHHHHHHHHHHHHTSCC
T ss_pred CCChhhhcCcccHHHHH-HcCC--------------HHHHH---HHHHHHHHHHHHHHHHhCCC
Confidence 2223333333322 1111 11111 23788899999999888876
No 47
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=91.01 E-value=10 Score=35.47 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=102.2
Q ss_pred HHHhcCCh---hhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCC--C--CCHHHHHHHHHHHhcCC
Q 016696 113 LGTLLLTK---ERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGH--P--NDILDAALTDTVSKFNL 185 (384)
Q Consensus 113 la~~~lP~---~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~--p--~~Pv~~aL~~~v~~~~L 185 (384)
+++.+.|. ++...+.-+.+|.-.+||+-|... ...+..+.+.+.+...|. | ..|+..+|.++.++..-
T Consensus 63 ~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~-----~~e~~~~~~~l~~~~~~~~~p~~~~~~~~al~d~~~e~~~ 137 (320)
T 3bny_A 63 VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEYMS-----FEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRA 137 (320)
T ss_dssp HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTTSC-----HHHHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHH
T ss_pred hHhhhCCCCCHHHHHHHHHHHHHHHHhhcccccCC-----hhhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 45556665 333456777888889999999832 223444555666555443 3 36888888877654320
Q ss_pred -ChHH----HHHHHHHHHh--hccCCCCCCHHHHHHHHHHhchHHHHHHHh--hhCCCCCCchhHHhHHHHHHHHHHHHH
Q 016696 186 -HIKP----FRDMIKGMRM--DTEKCRYANFQELYLYCYYAGGTVGLMSVP--VMGMDPDSSASAQSIYNAALYLGIGNQ 256 (384)
Q Consensus 186 -~~~~----~~~lI~g~~~--DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~--ilg~~~~~~~~~~~~~~~A~~LG~AlQ 256 (384)
.+.. +..++..+.. +-....++|++|...+-..+.|.--.+.+- .+|..- .....+.........+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l-~~e~~~~~~~l~~~~~~~~~ 216 (320)
T 3bny_A 138 HDREMADEILEPVFLFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKL-SPSELQRVREIDANCSKHLS 216 (320)
T ss_dssp HHHHHHHHTHHHHHHHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCC-CHHHHHHTHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 0122 2223322211 222356889999988888777754333332 234321 11111223344455556666
Q ss_pred HHHHHHhHHHHHhcCC---------CCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGR---------IYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAE 318 (384)
Q Consensus 257 LtNILRDv~eD~~~GR---------~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~ 318 (384)
|+|=|-.......+|- .-.-.-.+.++|++.++ ..+.+.++++...+.+.+..
T Consensus 217 L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~ee---------A~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 217 VVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVTAEA---------AKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHHHHHHCC-----------CCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHhhcccccccccccchHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555554 22334567888998765 33445555555555444433
No 48
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=90.93 E-value=13 Score=38.10 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHhcC--------CC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFN----GHPN--DILDAALTDTVSKFN--------LH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~----g~p~--~Pv~~aL~~~v~~~~--------L~-- 186 (384)
|-.+.-+.+|.-.+||+-|.... ...|+.+-+++++.-. .-|. .++..+|.+++++.. ..
T Consensus 282 Rl~~aK~~~litviDD~fD~~gt----~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 357 (543)
T 2ong_A 282 RIMMGKVNALITVIDDIYDVYGT----LEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVI 357 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSC----HHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 44444466777788999997532 3446666666664311 1132 356677776665432 11
Q ss_pred ---hHHHHHHHHHHHhh---ccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCc-hhH---HhHHHHHHHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMD---TEKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSS-ASA---QSIYNAALYLGIGNQ 256 (384)
Q Consensus 187 ---~~~~~~lI~g~~~D---L~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~-~~~---~~~~~~A~~LG~AlQ 256 (384)
++.+.++++++... ......+|++|.......+.|.--.++...++..+... ... ..........+...-
T Consensus 358 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~R 437 (543)
T 2ong_A 358 PYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLR 437 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHH
Confidence 34556677776544 34456789999998888887765555555444322111 000 001123333344444
Q ss_pred HHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLA 317 (384)
Q Consensus 257 LtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A 317 (384)
|.|=|........+|-+ -.=.-.|.++|++.++ ..+-+..+++.+.+.+.+.
T Consensus 438 L~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e 490 (543)
T 2ong_A 438 LADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE---------ARKHVKWLIAEVWKKMNAE 490 (543)
T ss_dssp HHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhhccccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 55555555556667764 1113467888998876 4456777777777777664
No 49
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=90.02 E-value=0.94 Score=42.56 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHhhccCCC-CCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHHH
Q 016696 191 RDMIKGMRMDTEKCR-YANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLTN 259 (384)
Q Consensus 191 ~~lI~g~~~DL~~~~-~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLtN 259 (384)
.+|+.|...|+.... ..|++++..-++.-.|++..+++.+... ...+....+.+...+.++|.|+|+.+
T Consensus 149 ~~~~~GQ~lDl~~~~~~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~D 219 (274)
T 3kra_B 149 EGMISGLHREEEIVDGNTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMME 219 (274)
T ss_dssp TTHHHHHHHHTTCCTTSSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999997643 6788998887778788887776664322 12222234567889999999999964
No 50
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=89.34 E-value=17 Score=35.57 Aligned_cols=119 Identities=13% Similarity=0.075 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHhchHH-HHHHHh---hhCCCCCCchhHHhHHHHHHHHHHHHHHHHHHHhH----------HHHHhcCCC
Q 016696 208 NFQELYLYCYYAGGTV-GLMSVP---VMGMDPDSSASAQSIYNAALYLGIGNQLTNILRDV----------GEDASRGRI 273 (384)
Q Consensus 208 t~~dL~~Yc~~vAGtV-G~l~l~---ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNILRDv----------~eD~~~GR~ 273 (384)
|++++..-.++=.|.+ ..+.+. +++.........+.+.+.+.++|.|+|+.+=+-|+ +.|++.|++
T Consensus 231 t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~ 310 (395)
T 3mav_A 231 NFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKL 310 (395)
T ss_dssp SHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCC
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCc
Confidence 6777766666655654 322222 23222211223356778999999999999888786 457888898
Q ss_pred CCCHHHHHhcCCChhh---hhc--ccCCHH----HHHHH------HHHHHHHHHHHHHHHHhhhhcccc
Q 016696 274 YLPQDELAKFGLRDED---IFS--RKVSDE----WREFM------KEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 274 YLP~d~L~~~Gvs~ed---l~~--~~~~~~----~~~li------~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
-+|.=..-+.. ++++ |.. ++.++. ++.++ ...-+.++.+.+++...+..+|..
T Consensus 311 T~p~i~al~~~-~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 378 (395)
T 3mav_A 311 TWPLIKTFELC-SEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHE 378 (395)
T ss_dssp CHHHHHHHHHS-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred hHHHHHHHHhC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 88875443321 2222 111 222322 22221 222334567777777777777653
No 51
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=88.58 E-value=3.1 Score=39.74 Aligned_cols=122 Identities=16% Similarity=0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhH-HhHHHHHHHHHHHHHHHHHHHhHHHH
Q 016696 191 RDMIKGMRMDTEKC-RYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASA-QSIYNAALYLGIGNQLTNILRDVGED 267 (384)
Q Consensus 191 ~~lI~g~~~DL~~~-~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~-~~~~~~A~~LG~AlQLtNILRDv~eD 267 (384)
.+|+.|...|+... .-.|++++..-.++-.|.+..+.+.+... ...+.... +.+...+.++|.|+|+.+=+-|+--|
T Consensus 159 ~~m~~GQ~lDl~~~~~~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd 238 (311)
T 3llw_A 159 KGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQD 238 (311)
T ss_dssp TTHHHHHHHHHHTTTSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHhcCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 46889999998653 34688998887777777776666654321 11111233 56788999999999999877777655
Q ss_pred HhcCCCCCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 016696 268 ASRGRIYLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELD 325 (384)
Q Consensus 268 ~~~GR~YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp 325 (384)
- +.+.| +..+ ..|+.+=-+.-.+..--..++.++++|.+.+..++
T Consensus 239 ~---------~~~GK---~~g~-~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~~~ 283 (311)
T 3llw_A 239 E---------EESGK---TTHL-DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDALK 283 (311)
T ss_dssp -------------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTTST
T ss_pred h---------HHHCc---cccc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2 11212 1112 44555544444455556677888888888877744
No 52
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=88.18 E-value=26 Score=36.10 Aligned_cols=182 Identities=11% Similarity=0.110 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCCCC--HHHHHHHHHHHhc--------CCC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHPND--ILDAALTDTVSKF--------NLH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p~~--Pv~~aL~~~v~~~--------~L~-- 186 (384)
|..+.-+-++.-.+||+-|.... ...|+-+-+++++. ...-|.. ++..+|.+++++. +..
T Consensus 291 R~~~aK~~~l~tviDD~yD~ygt----~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~ 366 (555)
T 3n0f_A 291 RNSVAKMFSFVTIIDDIYDVYGT----LDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENIL 366 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHhccccCC----HHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 66666777777888999997432 45566565665542 1122432 4566666655432 222
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCC-CCchhHH---hHHHHHHHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDP-DSSASAQ---SIYNAALYLGIGNQ 256 (384)
Q Consensus 187 ---~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~-~~~~~~~---~~~~~A~~LG~AlQ 256 (384)
++.+.+++.++-... .....+|++|.......+.|..-.++...++..+ -.....+ .........+....
T Consensus 367 ~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~R 446 (555)
T 3n0f_A 367 PYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFR 446 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHH
Confidence 244566777765543 3355789999999988887765444444443221 1111000 00122233333333
Q ss_pred HHHHHHhHHHHHhcCCCC-CCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGRIY-LPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLA 317 (384)
Q Consensus 257 LtNILRDv~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A 317 (384)
|.|=|........+|-+- .=.-.|.++|+|.++ ..+-+..+++.+.+-+.+.
T Consensus 447 L~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e 499 (555)
T 3n0f_A 447 LCNDLASASAEIARGETANSVSCYMRTKGISEEL---------ATESVMNLIDETWKKMNKE 499 (555)
T ss_dssp HHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhhhcCCcchHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 334333333344566441 112367788999877 4556777777776666553
No 53
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=88.17 E-value=11 Score=38.83 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHH----cCCCC--CHHHHHHHHHHHhcC--------CC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIF----NGHPN--DILDAALTDTVSKFN--------LH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~----~g~p~--~Pv~~aL~~~v~~~~--------L~-- 186 (384)
|-.+.-+.+|.-.+||+-|.... ...|+.+-+++++.- ..-|. .++..+|.+++++.. ..
T Consensus 309 Rl~~aK~~~litviDD~fD~ygT----~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~ 384 (569)
T 2j5c_A 309 RIMLTKINALVTTIDDVFDIYGT----LEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDST 384 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 44334466677788999997532 344666666665421 11232 356667766665422 11
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHH-------HHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIY-------NAALYLGI 253 (384)
Q Consensus 187 ---~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~-------~~A~~LG~ 253 (384)
++.+.++++++.... .....+|++|.......+.|.--.++...++..+... +++. ......+.
T Consensus 385 ~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt---~e~~e~l~~~p~i~~~~~~ 461 (569)
T 2j5c_A 385 PYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIE---EEAAESMHKYHDIVRASCT 461 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCC---HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCC---HHHHHHhhccHHHHHHHHH
Confidence 345566777765443 3345789999988888887765555555554432211 1111 12223333
Q ss_pred HHHHHHHHHhHHHHHhcCCCC-CCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 016696 254 GNQLTNILRDVGEDASRGRIY-LPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKA 327 (384)
Q Consensus 254 AlQLtNILRDv~eD~~~GR~Y-LP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~ 327 (384)
..-|.|=|........+|-+- .=.-.|.++|++.++ ..+-+..+++.+.+.+.+..-. ..+|..
T Consensus 462 i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~ee---------A~~~i~~~ie~~wk~ln~e~l~-~~vp~~ 526 (569)
T 2j5c_A 462 ILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEE---------AREHVRSLIDQTWKMMNKEMMT-SSFSKY 526 (569)
T ss_dssp HHHHHHHHHC----------CCHHHHC------CCHH---------HHHHHHHHHHHHHHHHHHHHHH-CCSCHH
T ss_pred HHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhc-cCCCHH
Confidence 333334333333444455431 112356677888765 4455667777776666654322 345543
No 54
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=87.64 E-value=27 Score=35.84 Aligned_cols=195 Identities=11% Similarity=0.092 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCCCC--HHHHHHHHHHHhcC--------CC-
Q 016696 122 RQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHPND--ILDAALTDTVSKFN--------LH- 186 (384)
Q Consensus 122 ~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p~~--Pv~~aL~~~v~~~~--------L~- 186 (384)
.|..+.-+-++.-.+||+-|... +...|+-+-+++++. ...-|.. ++..+|.+++++.. ..
T Consensus 288 ~R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~ 363 (550)
T 3m00_A 288 ARVMLVKTISMISIVDDTFDAYG----TVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHI 363 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHHccccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 36666667777788899999743 255666666666652 1122432 46677766655421 11
Q ss_pred ----hHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHH---hHHHHHHHHHHHHH
Q 016696 187 ----IKPFRDMIKGMRMDTE---KCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQ---SIYNAALYLGIGNQ 256 (384)
Q Consensus 187 ----~~~~~~lI~g~~~DL~---~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~---~~~~~A~~LG~AlQ 256 (384)
++.+.+++.++-.... ....+|++|.......+.|..-.++...+|...-.....+ .........+.-.-
T Consensus 364 ~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~~~lt~e~~e~~~~~p~i~~~~~~I~R 443 (550)
T 3m00_A 364 VCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKSATEQDFEWLSKNPKILEASVIICR 443 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTCTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcCCCCcHHHHHhhcccHHHHHHHhhhhe
Confidence 2445677777665542 2457899999999888888766666666675212211000 01112233333333
Q ss_pred HHHHHHhHHHHHhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCc
Q 016696 257 LTNILRDVGEDASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASR 329 (384)
Q Consensus 257 LtNILRDv~eD~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r 329 (384)
|.|=|........+|-+ -.=.-.|.++|+|.++ ..+-+..+++.+.+-+.+..-.-..+|....
T Consensus 444 L~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~ 508 (550)
T 3m00_A 444 VIDDTATYEVEKSRGQIATGIECCMRDYGISTKE---------AMAKFQNMAETAWKDINEGLLRPTPVSTEFL 508 (550)
T ss_dssp HHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHHTSSSCSSCGGGT
T ss_pred eeccchhHHHHHhcCCcccHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 44433444444567754 1113367788999877 4556677777776666553211123555444
No 55
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=87.53 E-value=13 Score=37.13 Aligned_cols=178 Identities=10% Similarity=0.012 Sum_probs=92.1
Q ss_pred hHHHhcCChh-hhHHH---HHHHHHHHHHhhh-cCCCCC-CCChHHHHHHHHHHHHHH---HcCC-------CCCHHHHH
Q 016696 112 YLGTLLLTKE-RQKAI---WAVYAWCKRTDEL-VDGPNA-FCVSPAALDRWEERLQDI---FNGH-------PNDILDAA 175 (384)
Q Consensus 112 yla~~~lP~~-~R~al---~ALYAf~R~~Ddi-vD~~~~-~~~~~~rL~~Wr~~L~~~---~~g~-------p~~Pv~~a 175 (384)
.+++...|.. ..+.+ .-+.+|.=..||. .|+... ......++..++..+..+ ..|. +.+|+..+
T Consensus 161 llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a~~~~d~l~~~~~g~p~~~~~~~~dp~~~a 240 (433)
T 3v1v_A 161 RYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLAHTAIDHFHSTAEYTPTWQASLAADAPRRA 240 (433)
T ss_dssp HHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHHHTTTSCCCCCTTTHHHHHHHTTSSHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHHHHHHHhhhcccCCCCccccccCCchHHHH
Confidence 3455566665 34444 3444555677999 787331 211233444443333211 1121 25688889
Q ss_pred HHHHHHhcC--CChHH-------HHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHH-HHHhhhCCC-CCCchhH
Q 016696 176 LTDTVSKFN--LHIKP-------FRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGL-MSVPVMGMD-PDSSASA 241 (384)
Q Consensus 176 L~~~v~~~~--L~~~~-------~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~-l~l~ilg~~-~~~~~~~ 241 (384)
|.+++++.. .+... +.++++++.... ....++|++|...+-..+++.... |+...+|.. ++.....
T Consensus 241 l~d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~sg~~p~~~l~e~~~g~~lp~~v~~~ 320 (433)
T 3v1v_A 241 YDSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTITDTVGGYELPADLHAR 320 (433)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSSSTTTGGGHHHHHTCCCCHHHHTS
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHcCCCCCHHHHhC
Confidence 999887652 34333 344444444332 235689999999887766332111 111223432 1110011
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CC-CCCHHHHHhcCCChhh
Q 016696 242 QSIYNAALYLGIGNQLTNILRDVGEDASRG-RI-YLPQDELAKFGLRDED 289 (384)
Q Consensus 242 ~~~~~~A~~LG~AlQLtNILRDv~eD~~~G-R~-YLP~d~L~~~Gvs~ed 289 (384)
..+.......+...-|+|=|-.......+| .+ -+-.-+|.++|++.++
T Consensus 321 p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~ee 370 (433)
T 3v1v_A 321 PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERD 370 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHH
Confidence 123334555666666777666666666663 44 4455677889999876
No 56
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=86.38 E-value=5.9 Score=38.59 Aligned_cols=138 Identities=15% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhccCC----CCCCHHHHHHHHHH-hchHHHHHHHh---hhCCCCCCchhHHhHHHHHHHHHHHHHHHHH
Q 016696 189 PFRDMIKGMRMDTEKC----RYANFQELYLYCYY-AGGTVGLMSVP---VMGMDPDSSASAQSIYNAALYLGIGNQLTNI 260 (384)
Q Consensus 189 ~~~~lI~g~~~DL~~~----~~~t~~dL~~Yc~~-vAGtVG~l~l~---ilg~~~~~~~~~~~~~~~A~~LG~AlQLtNI 260 (384)
...++..|...|+... .-.|.++...-.++ +|+-...+++. +++....+....+.+...+.++|.|+|+.+=
T Consensus 176 ~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DD 255 (368)
T 2q58_A 176 SIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHND 255 (368)
T ss_dssp HHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999998532 22345555443333 44332333322 2332111111224577899999999999988
Q ss_pred HHhH------HHHHhcCCCCCCHHHHHhcCCChhh---hh--cccCCHHHHHHHH------HHHHHHHHHHHHHHHhhhh
Q 016696 261 LRDV------GEDASRGRIYLPQDELAKFGLRDED---IF--SRKVSDEWREFMK------EQITRARYFYKLAEEGASE 323 (384)
Q Consensus 261 LRDv------~eD~~~GR~YLP~d~L~~~Gvs~ed---l~--~~~~~~~~~~li~------~~~~~A~~~l~~A~~~~~~ 323 (384)
+-|+ +.|++.|++-+|.=..-+. .++++ |. -++..+.++++.. ...+.++..++++.+.+..
T Consensus 256 iLD~~~gK~~g~Dl~egK~T~p~i~al~~-~~~~~r~~L~~~~~~~~~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~ 334 (368)
T 2q58_A 256 VSDYLFNDSNADDICRFKLTWPLQKSFEI-ADEEMKLKISENYGKNSSLVKDCYNLLKINEHYLEYQRNALDYLIKLVKD 334 (368)
T ss_dssp HHHHHSCCCSSCTTTSCCCCHHHHSSTTT-CCHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcccCCCCCchHhcCCcHHHHHHHHHh-CCHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 8884 5788999998886432221 23322 11 1223333333322 2234466677777777776
Q ss_pred cccc
Q 016696 324 LDKA 327 (384)
Q Consensus 324 Lp~~ 327 (384)
+|..
T Consensus 335 l~~~ 338 (368)
T 2q58_A 335 ITDD 338 (368)
T ss_dssp CSCH
T ss_pred ccch
Confidence 6653
No 57
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=85.78 E-value=35 Score=35.14 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCCCC--HHHHHHHHHHHhcC--------C---
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHPND--ILDAALTDTVSKFN--------L--- 185 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p~~--Pv~~aL~~~v~~~~--------L--- 185 (384)
|..+.-+-++.-.+||+-|... +...|+-+-+++++. ...-|.. ++..+|.+++++.. .
T Consensus 293 R~~~aK~~~l~tviDD~yD~yg----TleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~ 368 (554)
T 3g4d_A 293 RKMLTKVIAMASIVDDTYDSYA----TYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRV 368 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC----CHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC----CHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 6666667777778899999743 255666666666652 1222443 46777777665431 1
Q ss_pred --ChHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCchhHHhHHHHHH---HHHH-HHH
Q 016696 186 --HIKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSSASAQSIYNAAL---YLGI-GNQ 256 (384)
Q Consensus 186 --~~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~~~~~~~~~~A~---~LG~-AlQ 256 (384)
-++.+.++++++-... .....+|++|.......+.|..-.++...+|..+... +++.+... .+-. +.-
T Consensus 369 ~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt---~e~~e~~~~~p~i~~~~~~ 445 (554)
T 3g4d_A 369 EYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVT---PETFKWAASDPKIIQASTI 445 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSC---HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCC---HHHHHhccccHHHHHHHHH
Confidence 1244566777766554 3345789999999988888876666666666543221 12222221 1111 222
Q ss_pred HHHHHHhHHHH---HhcCCC-CCCHHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGED---ASRGRI-YLPQDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLA 317 (384)
Q Consensus 257 LtNILRDv~eD---~~~GR~-YLP~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A 317 (384)
++.++-|+.-. ..+|-+ -.=.-.|.++|+|.++ ..+-+..+++.+.+-+.+.
T Consensus 446 I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEe---------A~~~i~~~Ie~~wK~lN~e 501 (554)
T 3g4d_A 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE---------AYDVFNKHVESAWKDLNQE 501 (554)
T ss_dssp HHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 33444455543 244433 1112367788999877 4556677777776666553
No 58
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=76.88 E-value=4.2 Score=37.99 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHhchHHHHHHHhhhCC-CCCCchhHHhHHHHHHHHHHHHHHH
Q 016696 191 RDMIKGMRMDTEKCRYANFQELYLYCYYAGGTVGLMSVPVMGM-DPDSSASAQSIYNAALYLGIGNQLT 258 (384)
Q Consensus 191 ~~lI~g~~~DL~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~-~~~~~~~~~~~~~~A~~LG~AlQLt 258 (384)
.+|+.|...|+....-.+.+.+..-+++-.|.+..+.+.+-.. ...+....+.+.+.+.++|.|+|+.
T Consensus 151 ~~~~~GQ~lDl~~~~~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~ 219 (273)
T 3qkc_B 151 EGIVEGQYHELGLNQLNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLL 219 (273)
T ss_dssp TTHHHHHHHHTTCCSSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999976444466555544455556666555554221 1112223456788999999999996
No 59
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=65.16 E-value=1.5e+02 Score=31.81 Aligned_cols=178 Identities=13% Similarity=0.049 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHH----HcCCCC--CHHHHHHHHHHHhc--------CCC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDI----FNGHPN--DILDAALTDTVSKF--------NLH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~----~~g~p~--~Pv~~aL~~~v~~~--------~L~-- 186 (384)
|..+.=+-++.-.+||+-|... +...|+-+-+++++. ..+-|. ..+..+|.+++++. +..
T Consensus 552 R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~ 627 (817)
T 3sdr_A 552 RFLFTKVACLQTVLDDMYDTYG----TLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELV 627 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 6666667777788899999743 245566666666642 122242 24566666655432 221
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHH-HHHHhhhCCCCCCchhHHhHHHHHH-----HHHHH
Q 016696 187 ---IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVG-LMSVPVMGMDPDSSASAQSIYNAAL-----YLGIG 254 (384)
Q Consensus 187 ---~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG-~l~l~ilg~~~~~~~~~~~~~~~A~-----~LG~A 254 (384)
++.+.+++.++.... .....+|++|.......+.|.-- .++..+++..+... +++.+... .+-.+
T Consensus 628 ~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt---~e~~e~~~~~s~p~l~~~ 704 (817)
T 3sdr_A 628 SFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLS---QEALEKVDYPGRRVLTEL 704 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCC---HHHHHTTCCTTSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCC---HHHHhcccccchHHHHHH
Confidence 244566777766544 33457899998888777766543 23333333322111 11222111 11111
Q ss_pred H-HHHHHHHhHHHH---HhcCCC-CCCHHHHHhc-CCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016696 255 N-QLTNILRDVGED---ASRGRI-YLPQDELAKF-GLRDEDIFSRKVSDEWREFMKEQITRARYFYKL 316 (384)
Q Consensus 255 l-QLtNILRDv~eD---~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~ 316 (384)
. -+..++-|+.-. ..+|.+ -.=.-.|.++ |++.++ ..+-+..+++.+.+-+.+
T Consensus 705 ~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~Ee---------A~~~i~~~Ie~~wKeln~ 763 (817)
T 3sdr_A 705 NSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEE---------ALDHIYSILEPAVKELTR 763 (817)
T ss_dssp HHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 1 122333343322 234433 1113367788 688876 344566677666665554
No 60
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=63.65 E-value=1.6e+02 Score=31.50 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHH----cCCCC--CHHHHHHHHHHHhc--------CCC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIF----NGHPN--DILDAALTDTVSKF--------NLH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~----~g~p~--~Pv~~aL~~~v~~~--------~L~-- 186 (384)
|..+.-+-++.-.+||+-|... +...|+-+-+++++.- ..-|. ..+..+|.+++++. +..
T Consensus 524 R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~ 599 (785)
T 3s9v_A 524 REVYTKTSNFTVILDDLYDAHG----SLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVL 599 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 6666666777788899999543 2556666666666531 11232 24566666655432 211
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCCCCc-hhHHh--H-HHHHHHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDPDSS-ASAQS--I-YNAALYLGIGNQ 256 (384)
Q Consensus 187 ---~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~~~~-~~~~~--~-~~~A~~LG~AlQ 256 (384)
++.+.+++.++.... .....+|++|.......+.|.--.++..+++..+... ...+. . .+.....+.-+-
T Consensus 600 ~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~R 679 (785)
T 3s9v_A 600 GYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGR 679 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHH
Confidence 244566777766554 3355789999888887777765444444444322111 00000 0 112223333333
Q ss_pred HHHHHHhHHHHHhcCCC-CCCHHHHHhc-CCChhhhhcccCCHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGRI-YLPQDELAKF-GLRDEDIFSRKVSDEWREFMKEQITRARYFYKL 316 (384)
Q Consensus 257 LtNILRDv~eD~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~ 316 (384)
|.|=|........+|-+ -.=.-.|.++ |++.++ ..+-+..+++.+.+-+.+
T Consensus 680 L~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe---------A~~~i~~~Ie~~wKeln~ 732 (785)
T 3s9v_A 680 LVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEE---------ALQHVYSVMENALEELNR 732 (785)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHH---------HHHHHHHHHHHHHHHHHH
Confidence 33433333344466644 1113467888 899876 344566677666665554
No 61
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=57.06 E-value=1.4e+02 Score=28.80 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=86.9
Q ss_pred CChhhhHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc--CCChHHH----
Q 016696 118 LTKERQKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIFNGHP-NDILDAALTDTVSKF--NLHIKPF---- 190 (384)
Q Consensus 118 lP~~~R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~~g~p-~~Pv~~aL~~~v~~~--~L~~~~~---- 190 (384)
.+.+....+.-..+|.=.+||+.|++. ..+..+.+.+- .|.| .||+..+|.+...+. ..+..+.
T Consensus 81 a~~e~l~liad~~~~~F~lDD~~d~~~------~~l~~~~~~ll---~G~~~~~Pl~~al~dl~~rl~~~~~p~~~~rf~ 151 (374)
T 1yyq_A 81 VSKECMADLSIHYTYTLVLDDSKDDPY------PTMVNYFDDLQ---AGREQAHPWWALVNEHFPNVLRHFGPFCSLNLI 151 (374)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCSCSH------HHHTTHHHHHH---HTCCCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccccCcH------HHHHHHHHHHh---cCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 355677777777788888999998753 33444444433 3654 589999999988753 3454443
Q ss_pred ---HHHHHHHHhhcc-CCCCCCHHHHHHHHHHhchHHHHHHHhh-hCCC--CCCchhHHhHHHHHHHHHHHHHHHHHHHh
Q 016696 191 ---RDMIKGMRMDTE-KCRYANFQELYLYCYYAGGTVGLMSVPV-MGMD--PDSSASAQSIYNAALYLGIGNQLTNILRD 263 (384)
Q Consensus 191 ---~~lI~g~~~DL~-~~~~~t~~dL~~Yc~~vAGtVG~l~l~i-lg~~--~~~~~~~~~~~~~A~~LG~AlQLtNILRD 263 (384)
.+.+.|.-.... ...+++.++.-.|-+...|. +..+... +... ++. ........+...+.. .+++.-|
T Consensus 152 ~s~~~~~~a~~~Ea~n~~~~p~~~~Y~~~rR~~sG~-~E~~~~~~~P~~~~~e~-~~~~~~~~~i~am~~---~i~~~ND 226 (374)
T 1yyq_A 152 RSTLDFFEGCWIEQYNFGGFPGSHDYPQFLRRMNGL-GHCVGASLWPKEQFNER-SLFLEITSAIAQMEN---WMVWVND 226 (374)
T ss_dssp HHHHHHHHHHHHHTTCCCCCTTCTTHHHHHHHHHHC-HHHHHHTTCCTTTCCTT-TTHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhhccH-HHHHHHhhccccccchh-hcchhHHHHHHHHHH---HHHhhhh
Confidence 344444433322 22344566666666666664 3433332 2221 111 111223334444444 5555555
Q ss_pred HHHH---Hh--cCCCCCCHHHHHhcCCChhh
Q 016696 264 VGED---AS--RGRIYLPQDELAKFGLRDED 289 (384)
Q Consensus 264 v~eD---~~--~GR~YLP~d~L~~~Gvs~ed 289 (384)
|--- .. ..+.-+...+...+|+|.++
T Consensus 227 IlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~e 257 (374)
T 1yyq_A 227 LMSFYKEFDDERDQISLVKNYVVSDEISLHE 257 (374)
T ss_dssp HHHHHHHTTCSSCCCCHHHHHHHHHTCCHHH
T ss_pred hhccchhhhccCCccchhhhehhcCCCCHHH
Confidence 5433 32 23456667788888888765
No 62
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=51.51 E-value=21 Score=31.22 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHhchH
Q 016696 150 PAALDRWEERLQDIFNGHPNDILDAALTDTVSKFN-LHIKPFRDMIKGMRMDTEK-CRYANFQELYLYCYYAGGT 222 (384)
Q Consensus 150 ~~rL~~Wr~~L~~~~~g~p~~Pv~~aL~~~v~~~~-L~~~~~~~lI~g~~~DL~~-~~~~t~~dL~~Yc~~vAGt 222 (384)
.-++..|||.|-. .| ..+|.+++..|+ .+.+.++.+|..-..+... .+....-+|..|+..++.+
T Consensus 105 ~h~lE~wRdrLi~--~g------d~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~kppka~ReLFqyLr~~~~~ 171 (176)
T 2p0t_A 105 FHNLERWRDRLIA--GD------DADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYIRELDEL 171 (176)
T ss_dssp HHHHHHHHHHHHH--SC------HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CC------HHHHHHHHHHCchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 3568999988743 23 247778888885 8999999999988887653 5677899999999975443
No 63
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=50.69 E-value=2.6e+02 Score=29.82 Aligned_cols=182 Identities=14% Similarity=0.067 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHHHHHHHHHH----cCCCC--CHHHHHHHHHHHhc--------CCC--
Q 016696 123 QKAIWAVYAWCKRTDELVDGPNAFCVSPAALDRWEERLQDIF----NGHPN--DILDAALTDTVSKF--------NLH-- 186 (384)
Q Consensus 123 R~al~ALYAf~R~~DdivD~~~~~~~~~~rL~~Wr~~L~~~~----~g~p~--~Pv~~aL~~~v~~~--------~L~-- 186 (384)
|..+.-+-++.-.+||+-|... +...|+-+-+++++.- .+-|. ..+..+|.+++++. +..
T Consensus 493 R~~~aK~~~l~tviDD~yD~yg----T~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~ 568 (764)
T 3p5p_A 493 RIAFTKIGCLQVLFDDMADIFA----TLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDML 568 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHHHcccCC----CHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence 5555566667778899998743 2456666666666421 11232 24566666655432 211
Q ss_pred ---hHHHHHHHHHHHhhc---cCCCCCCHHHHHHHHHHhchHHHHHHHhhhCCCC-CCchhHHhH---HHHHHHHHHHHH
Q 016696 187 ---IKPFRDMIKGMRMDT---EKCRYANFQELYLYCYYAGGTVGLMSVPVMGMDP-DSSASAQSI---YNAALYLGIGNQ 256 (384)
Q Consensus 187 ---~~~~~~lI~g~~~DL---~~~~~~t~~dL~~Yc~~vAGtVG~l~l~ilg~~~-~~~~~~~~~---~~~A~~LG~AlQ 256 (384)
++.+.+++.++.... .....+|++|.......+.|.--.++..+++..+ -.....+.. .+.....+.-+-
T Consensus 569 ~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~R 648 (764)
T 3p5p_A 569 AHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWR 648 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHH
Confidence 244566777766554 3345789999888877776664233333333221 111100000 112222222222
Q ss_pred HHHHHHhHHHHHhcCCC-CCCHHHHHhc-CCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 016696 257 LTNILRDVGEDASRGRI-YLPQDELAKF-GLRDEDIFSRKVSDEWREFMKEQITRARYFYKLA 317 (384)
Q Consensus 257 LtNILRDv~eD~~~GR~-YLP~d~L~~~-Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A 317 (384)
|.|=|........+|-+ -.=.-.|.++ |++.++ ..+-+..+++.+.+-+.+.
T Consensus 649 L~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEe---------A~~~i~~~Ie~~wKeln~e 702 (764)
T 3p5p_A 649 LTNDTKTYQAEKARGQQASGIACYMKDNPGATEED---------AIKHICRVVDRALKEASFE 702 (764)
T ss_dssp HHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 23322333333345543 1113468888 788876 3445667777766655543
No 64
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=37.49 E-value=15 Score=25.15 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.8
Q ss_pred hcCCCCCCHHHHHhcCCChhhh
Q 016696 269 SRGRIYLPQDELAKFGLRDEDI 290 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl 290 (384)
.+|++.||.++.++.|+.+.|-
T Consensus 10 ~kgqi~IPk~ir~~lgi~~Gd~ 31 (53)
T 2l66_A 10 RNYQVTIPAKVRQKFQIKEGDL 31 (53)
T ss_dssp SSSCBCCCHHHHHHSCCCTTCE
T ss_pred CCCEEEeCHHHHHHcCcCCCCE
Confidence 5799999999999999998774
No 65
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=35.91 E-value=10 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.9
Q ss_pred hcCCCCCCHHHHHhcCCChhhh
Q 016696 269 SRGRIYLPQDELAKFGLRDEDI 290 (384)
Q Consensus 269 ~~GR~YLP~d~L~~~Gvs~edl 290 (384)
..||+.||.++.++.|+.+.|-
T Consensus 20 ~kGqItIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 20 ELGRVVIPIELRRTLGIAEKDA 41 (59)
T ss_dssp TTCEEECCHHHHHHTTCCTTCE
T ss_pred CCCEEEeCHHHHHHcCCCCCCE
Confidence 6899999999999999998774
No 66
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=31.98 E-value=1.1e+02 Score=23.30 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016696 302 FMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDNDYDNLT 355 (384)
Q Consensus 302 li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~y~vf~ 355 (384)
...+.++.|+.++..++-++.. .-....++........|+.++-..+.+|.
T Consensus 31 ~a~~~l~mA~~Y~~Da~~fl~k---GD~v~Ala~isYa~GwLDAlR~~~~~~~~ 81 (87)
T 2pmr_A 31 DEEAVVERALNYRDDSVYYLEK---GDHITSFGCITYAHGLLDSLRMLHRIIEG 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4567888899999998876543 33446788888889999999988888874
No 67
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=29.48 E-value=1.6e+02 Score=25.51 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=43.3
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhC
Q 016696 278 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARYFYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDN 349 (384)
Q Consensus 278 d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 349 (384)
+.++..|++.+++.+.+..+.....+..+...+...+..+. ..+.....+|..+.+++.+.
T Consensus 91 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~-----------aAl~pc~~~Y~~ig~~l~~~ 151 (214)
T 2qzc_A 91 KLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLDWNKFL-----------VAWTPCMFGYSIVGDYVIDS 151 (214)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHCHHHHH-----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCHHHHH-----------HHHHHHHHHHHHHHHHHHhC
Confidence 45688999999998888889888888888876644222211 13445567788888888654
No 68
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=25.07 E-value=2e+02 Score=25.27 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=44.2
Q ss_pred HHHHHhcCCChhhh-hcccCCHHHHHHHHHHHHHHHH--HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCC
Q 016696 277 QDELAKFGLRDEDI-FSRKVSDEWREFMKEQITRARY--FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDND 350 (384)
Q Consensus 277 ~d~L~~~Gvs~edl-~~~~~~~~~~~li~~~~~~A~~--~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~ 350 (384)
.+.++..|++.+++ ......+.....+..+...+.. -+..+.. .+.....+|..+.+++.+.+
T Consensus 87 ~~~~~~~gi~~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~~a-----------Al~pC~~~Y~~ig~~l~~~~ 152 (229)
T 4fn6_A 87 DILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQAHSRENAIYTIA-----------AMAPCPYIYAELAKRSQSDH 152 (229)
T ss_dssp HHHHHHHTSCHHHHHHSCCCCHHHHHHHHHHHHHHHHCCSHHHHHH-----------HHTHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhhcCCHHHHHH-----------HHHHHHHHHHHHHHHHHHcC
Confidence 45677899999998 7778889888888888876654 3333322 22234567888888887654
No 69
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=24.08 E-value=1.8e+02 Score=25.35 Aligned_cols=62 Identities=6% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhC
Q 016696 277 QDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARY-FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDN 349 (384)
Q Consensus 277 ~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 349 (384)
.+.++..|++.+++......+.....+..+...+.. .+..+. ..+.....+|..+.+.+.+.
T Consensus 91 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~~-----------aAl~pc~~~Y~~ig~~l~~~ 153 (221)
T 3ibx_A 91 NHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVA-----------AAVLSCGWSYLVIAQNLSQI 153 (221)
T ss_dssp HHHHHHTTCCHHHHHHCCCCHHHHHHHHHHHHHHHHSCHHHHH-----------HHTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCHHHHhhccCCHHHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHHHHHHHHHHHhc
Confidence 456788999999998888899988888888776653 122111 12344566788888888655
No 70
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=22.81 E-value=2.6e+02 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=42.2
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhC
Q 016696 278 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARY-FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDN 349 (384)
Q Consensus 278 d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 349 (384)
+.++..|++++++.+.+..+.....+..+...+.. -+..+. ..+.....+|..+.+.+.+.
T Consensus 96 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~l-----------aAl~pc~~~Y~~ig~~l~~~ 157 (221)
T 2gm8_A 96 ALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCM-----------AALLPCFWSYAEIAERHGGK 157 (221)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCHHHHhhCCCChHHHHHHHHHHHHHhcCCHHHHH-----------HHHHhHHHHHHHHHHHHHhc
Confidence 45788999999998888889888888888776543 122111 13444566788888887654
No 71
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=22.07 E-value=2.2e+02 Score=25.52 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=43.7
Q ss_pred HHHHHhcCCChhhh-hcccCCHHHHHHHHHHHHHHHH--HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCC
Q 016696 277 QDELAKFGLRDEDI-FSRKVSDEWREFMKEQITRARY--FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDND 350 (384)
Q Consensus 277 ~d~L~~~Gvs~edl-~~~~~~~~~~~li~~~~~~A~~--~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~ 350 (384)
.+.+++.|++.+++ ......+........+...|.. -+..+.. .+.....+|..+.+++.+.+
T Consensus 106 ~~~~~~~gi~~~~~~~~~~~~p~~~aYt~~ll~~a~~~g~~~~~la-----------Al~PC~w~Y~eig~~l~~~~ 171 (248)
T 3no6_A 106 EVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIA-----------AMAPCPYVYAVIGKRAMEDP 171 (248)
T ss_dssp HHHHHHTTSCHHHHCCSCCCCHHHHHHHHHHHHHHHHCSSTHHHHH-----------HHTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCCHHHHhhhcCCCHHHHHHHHHHHHHHhcCCCHHHHHH-----------HHHHHHHHHHHHHHHHHhcC
Confidence 45678899999998 7777888888888888876654 2332221 22334567888888887664
No 72
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} SCOP: a.132.1.0
Probab=20.90 E-value=2.8e+02 Score=24.21 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=43.1
Q ss_pred HHHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhCC
Q 016696 277 QDELAKFGLRDEDIFSRKVSDEWREFMKEQITRARY-FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDND 350 (384)
Q Consensus 277 ~d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~~ 350 (384)
.+.++..|++.+++......+.....+..+...+.. .+..+ ...+.....+|..+.+.+.+.+
T Consensus 93 ~~~~~~~Gi~~~~~~~~~~~p~~~aY~~~l~~~a~~~~~~~~-----------~aAl~pc~~~Y~~ig~~l~~~~ 156 (226)
T 3mvu_A 93 IGICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLDL-----------LAALAPCVMGYGEIGKRLTAEA 156 (226)
T ss_dssp HHHHHHTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHSCHHHH-----------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhcCCHHHH-----------HHHHHHHHHHHHHHHHHHHhcC
Confidence 355778999999998888889888888888766543 11111 1134445567888888877653
No 73
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=20.72 E-value=2.7e+02 Score=24.30 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=41.2
Q ss_pred HHHHhcCCChhhhhcccCCHHHHHHHHHHHHHHHH-HHHHHHHhhhhccccCcHHHHHHHHHHHHHHHHHHhC
Q 016696 278 DELAKFGLRDEDIFSRKVSDEWREFMKEQITRARY-FYKLAEEGASELDKASRWPVWTVLILYQKILDAIQDN 349 (384)
Q Consensus 278 d~L~~~Gvs~edl~~~~~~~~~~~li~~~~~~A~~-~l~~A~~~~~~Lp~~~r~~v~~~~~ly~~iL~~Ie~~ 349 (384)
+.++..|++.+++.+.+..+.....+..+...+.. .+..+. ..+.....+|..+.+.+.+.
T Consensus 89 ~~~~~~Gi~~~~~~~~~~~p~t~aY~~~l~~~a~~~~~~~~l-----------aAl~pc~~~Y~~ig~~l~~~ 150 (226)
T 1udd_A 89 KLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYKGNIIEGL-----------TALLPCFWSYAEIAEYHKDK 150 (226)
T ss_dssp HHHHHTTCCHHHHHHSCCCHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCCHHHHhhCCCCHHHHHHHHHHHHHHhcCCHHHHH-----------HHHHHHHHHHHHHHHHHHhc
Confidence 45688999999998888889888888888776542 222211 13344556677777776543
Done!