Query 016699
Match_columns 384
No_of_seqs 347 out of 1637
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 2.1E-57 4.6E-62 402.1 24.2 208 48-267 1-208 (209)
2 KOG1118 Lysophosphatidic acid 100.0 7.9E-54 1.7E-58 404.7 26.3 313 11-376 1-365 (366)
3 KOG3725 SH3 domain protein SH3 100.0 4.8E-49 1E-53 364.8 23.9 322 4-372 5-374 (375)
4 cd07617 BAR_Endophilin_B2 The 100.0 1.4E-34 2.9E-39 268.4 19.7 193 27-269 3-220 (220)
5 cd07616 BAR_Endophilin_B1 The 100.0 3.2E-34 6.8E-39 268.2 21.1 202 26-269 2-229 (229)
6 cd07613 BAR_Endophilin_A1 The 100.0 9.9E-34 2.2E-38 263.6 20.6 178 49-271 8-218 (223)
7 cd07594 BAR_Endophilin_B The B 100.0 1.1E-33 2.3E-38 265.5 20.9 203 25-269 1-229 (229)
8 cd07615 BAR_Endophilin_A3 The 100.0 7.7E-33 1.7E-37 257.9 20.8 178 49-271 8-218 (223)
9 cd07614 BAR_Endophilin_A2 The 100.0 1.3E-32 2.8E-37 256.7 20.7 178 49-271 8-218 (223)
10 cd07592 BAR_Endophilin_A The B 100.0 9.1E-31 2E-35 245.1 21.0 178 50-271 9-218 (223)
11 cd07593 BAR_MUG137_fungi The B 100.0 9.9E-30 2.1E-34 236.8 21.3 195 34-271 6-210 (215)
12 cd07619 BAR_Rich2 The Bin/Amph 99.9 3E-26 6.5E-31 216.4 22.5 206 31-271 4-230 (248)
13 cd07595 BAR_RhoGAP_Rich-like T 99.9 4.4E-26 9.5E-31 216.6 22.6 195 49-283 16-235 (244)
14 cd07618 BAR_Rich1 The Bin/Amph 99.9 1.3E-25 2.9E-30 212.4 23.2 202 31-271 4-228 (246)
15 cd07600 BAR_Gvp36 The Bin/Amph 99.9 2.1E-21 4.5E-26 184.0 20.1 147 87-268 82-241 (242)
16 cd07620 BAR_SH3BP1 The Bin/Amp 99.9 1.9E-20 4.2E-25 176.3 21.6 184 47-271 17-239 (257)
17 smart00721 BAR BAR domain. 99.8 3.8E-17 8.2E-22 153.4 22.1 223 11-269 2-237 (239)
18 PF03114 BAR: BAR domain; Int 99.7 3E-16 6.5E-21 144.7 22.1 221 11-269 1-228 (229)
19 KOG3771 Amphiphysin [Intracell 99.7 1.5E-15 3.3E-20 152.6 25.5 216 8-270 3-228 (460)
20 cd07307 BAR The Bin/Amphiphysi 99.7 6.2E-15 1.3E-19 131.6 20.3 190 58-266 3-192 (194)
21 PF14604 SH3_9: Variant SH3 do 99.5 1.2E-14 2.7E-19 104.9 5.6 49 322-370 1-49 (49)
22 PF07653 SH3_2: Variant SH3 do 99.4 5.4E-13 1.2E-17 98.3 5.6 54 319-372 1-55 (55)
23 cd07645 I-BAR_IMD_BAIAP2L1 Inv 99.3 1.9E-10 4.1E-15 106.2 19.8 190 46-270 18-221 (226)
24 cd07606 BAR_SFC_plant The Bin/ 99.3 6.7E-10 1.4E-14 103.1 19.7 157 86-265 39-199 (202)
25 cd07639 BAR_ACAP1 The Bin/Amph 99.3 8.4E-10 1.8E-14 102.0 20.0 181 62-266 16-197 (200)
26 KOG0162 Myosin class I heavy c 99.3 6E-12 1.3E-16 131.4 6.1 56 316-371 1050-1105(1106)
27 cd07646 I-BAR_IMD_IRSp53 Inver 99.3 4.7E-10 1E-14 104.4 18.0 190 47-271 21-224 (232)
28 KOG2070 Guanine nucleotide exc 99.2 3.1E-12 6.8E-17 128.8 3.8 56 318-373 18-73 (661)
29 cd07603 BAR_ACAPs The Bin/Amph 99.2 1.5E-09 3.3E-14 100.6 21.1 187 57-266 11-197 (200)
30 KOG2199 Signal transducing ada 99.2 3.2E-12 7E-17 126.0 2.5 59 315-373 213-271 (462)
31 PF00018 SH3_1: SH3 domain; I 99.2 2E-11 4.4E-16 87.4 5.2 46 321-366 1-48 (48)
32 KOG2856 Adaptor protein PACSIN 99.2 1E-09 2.2E-14 107.5 18.5 55 318-372 415-471 (472)
33 cd07634 BAR_GAP10-like The Bin 99.2 1.6E-09 3.6E-14 100.3 19.0 185 60-266 14-204 (207)
34 cd07604 BAR_ASAPs The Bin/Amph 99.2 2.8E-09 6.1E-14 99.9 20.1 194 40-268 7-211 (215)
35 smart00326 SH3 Src homology 3 99.2 4.5E-11 9.8E-16 86.7 6.2 55 318-372 3-58 (58)
36 KOG4226 Adaptor protein NCK/Do 99.2 4.9E-11 1.1E-15 112.8 6.6 56 320-375 110-165 (379)
37 KOG1029 Endocytic adaptor prot 99.2 2.5E-09 5.4E-14 112.7 19.8 60 316-375 692-753 (1118)
38 cd07588 BAR_Amphiphysin The Bi 99.2 5.1E-09 1.1E-13 97.8 19.8 175 58-271 26-208 (211)
39 cd07602 BAR_RhoGAP_OPHN1-like 99.1 6.7E-09 1.4E-13 96.5 20.1 185 62-266 16-204 (207)
40 cd07644 I-BAR_IMD_BAIAP2L2 Inv 99.1 3E-09 6.4E-14 97.4 17.4 165 84-266 42-208 (215)
41 cd00174 SH3 Src homology 3 dom 99.1 1.1E-10 2.3E-15 83.7 6.1 51 320-370 2-53 (54)
42 KOG1029 Endocytic adaptor prot 99.1 2.7E-11 5.8E-16 127.1 3.8 56 318-373 1054-1109(1118)
43 cd07638 BAR_ACAP2 The Bin/Amph 99.1 1.1E-08 2.3E-13 94.7 20.2 179 65-266 19-197 (200)
44 cd07590 BAR_Bin3 The Bin/Amphi 99.1 8.5E-09 1.9E-13 97.2 19.8 186 55-271 22-214 (225)
45 PF10455 BAR_2: Bin/amphiphysi 99.1 4.4E-09 9.6E-14 102.1 17.7 154 87-269 125-287 (289)
46 PF08397 IMD: IRSp53/MIM homol 99.1 1.5E-08 3.4E-13 95.1 20.9 196 48-271 10-210 (219)
47 cd07637 BAR_ACAP3 The Bin/Amph 99.1 1.9E-08 4E-13 93.3 20.5 159 85-266 39-197 (200)
48 KOG4225 Sorbin and SH3 domain- 99.1 2.3E-10 5.1E-15 114.2 6.9 57 318-374 231-287 (489)
49 cd07636 BAR_GRAF The Bin/Amphi 99.1 1.4E-08 3E-13 94.3 18.0 185 58-266 12-204 (207)
50 cd07601 BAR_APPL The Bin/Amphi 99.0 4.1E-08 9E-13 91.8 21.2 188 61-267 15-205 (215)
51 cd07612 BAR_Bin2 The Bin/Amphi 99.0 1.9E-08 4.1E-13 93.7 18.3 177 57-271 25-208 (211)
52 cd07635 BAR_GRAF2 The Bin/Amph 99.0 4.2E-08 9E-13 91.1 20.3 185 62-266 16-204 (207)
53 cd07605 I-BAR_IMD Inverse (I)- 99.0 7.2E-08 1.6E-12 90.8 20.4 171 87-270 45-220 (223)
54 cd07642 BAR_ASAP2 The Bin/Amph 99.0 7.2E-08 1.6E-12 89.5 19.9 172 75-269 29-212 (215)
55 KOG4348 Adaptor protein CMS/SE 99.0 3E-10 6.5E-15 113.2 3.3 56 318-373 262-319 (627)
56 cd07611 BAR_Amphiphysin_I_II T 98.9 1.2E-07 2.6E-12 88.3 19.3 175 58-271 26-208 (211)
57 KOG4348 Adaptor protein CMS/SE 98.9 2.6E-10 5.5E-15 113.7 0.8 61 314-374 97-157 (627)
58 PF06456 Arfaptin: Arfaptin-li 98.9 5.3E-07 1.1E-11 85.4 21.7 226 9-262 3-229 (229)
59 KOG2996 Rho guanine nucleotide 98.9 2.1E-09 4.6E-14 110.4 5.3 58 316-373 804-863 (865)
60 cd07633 BAR_OPHN1 The Bin/Amph 98.9 3.2E-07 6.9E-12 84.6 19.0 180 63-266 17-204 (207)
61 cd07641 BAR_ASAP1 The Bin/Amph 98.9 1.6E-07 3.6E-12 86.8 17.1 182 67-268 21-211 (215)
62 KOG2546 Abl interactor ABI-1, 98.8 5.1E-09 1.1E-13 104.4 6.6 56 318-373 424-479 (483)
63 KOG4225 Sorbin and SH3 domain- 98.8 4.2E-09 9E-14 105.4 4.6 55 317-371 432-488 (489)
64 cd07640 BAR_ASAP3 The Bin/Amph 98.8 1.6E-06 3.5E-11 79.4 19.9 174 74-267 28-208 (213)
65 KOG3655 Drebrins and related a 98.7 8.9E-09 1.9E-13 104.1 5.1 57 316-372 426-483 (484)
66 cd07591 BAR_Rvs161p The Bin/Am 98.7 3.1E-06 6.8E-11 79.9 20.5 185 52-270 19-212 (224)
67 KOG1264 Phospholipase C [Lipid 98.6 1.2E-08 2.7E-13 108.1 2.9 59 317-375 774-833 (1267)
68 KOG4226 Adaptor protein NCK/Do 98.6 1.7E-08 3.8E-13 95.7 3.0 61 318-378 192-255 (379)
69 cd07643 I-BAR_IMD_MIM Inverse 98.6 1E-05 2.3E-10 75.6 20.4 158 87-258 47-210 (231)
70 cd07598 BAR_FAM92 The Bin/Amph 98.6 4.3E-05 9.4E-10 71.6 24.2 164 85-271 41-204 (211)
71 cd07631 BAR_APPL1 The Bin/Amph 98.6 8.7E-06 1.9E-10 75.7 18.7 162 87-267 41-205 (215)
72 cd07632 BAR_APPL2 The Bin/Amph 98.5 2E-05 4.4E-10 72.9 19.9 162 87-269 41-206 (215)
73 KOG4792 Crk family adapters [S 98.5 3.7E-08 8.1E-13 91.3 1.6 62 317-378 124-186 (293)
74 cd00011 BAR_Arfaptin_like The 98.4 6.9E-05 1.5E-09 69.6 20.9 183 63-266 17-201 (203)
75 KOG0515 p53-interacting protei 98.4 2.5E-07 5.5E-12 94.7 4.6 57 319-375 685-744 (752)
76 KOG1702 Nebulin repeat protein 98.4 3E-07 6.5E-12 84.1 4.2 55 318-372 208-264 (264)
77 cd07660 BAR_Arfaptin The Bin/A 98.4 7.5E-05 1.6E-09 69.1 19.6 186 60-267 14-199 (201)
78 KOG3601 Adaptor protein GRB2, 98.3 3.2E-07 7E-12 84.4 3.8 57 316-372 162-218 (222)
79 KOG3875 Peroxisomal biogenesis 98.3 1.5E-07 3.2E-12 90.9 0.2 57 318-374 269-332 (362)
80 cd07659 BAR_PICK1 The Bin/Amph 98.3 0.00016 3.4E-09 66.9 19.1 190 58-263 12-208 (215)
81 KOG4429 Uncharacterized conser 98.2 7.1E-05 1.5E-09 72.1 17.1 56 317-372 363-418 (421)
82 KOG3523 Putative guanine nucle 98.2 1.4E-07 3E-12 97.9 -1.4 60 315-374 606-667 (695)
83 KOG4792 Crk family adapters [S 98.2 5.6E-06 1.2E-10 77.1 8.1 61 314-374 224-286 (293)
84 KOG1843 Uncharacterized conser 98.1 1.7E-06 3.6E-11 86.4 3.8 53 319-371 418-472 (473)
85 cd07599 BAR_Rvs167p The Bin/Am 98.1 0.0011 2.4E-08 62.0 21.4 134 109-264 71-211 (216)
86 cd07596 BAR_SNX The Bin/Amphip 98.1 0.00099 2.2E-08 61.2 20.4 198 47-265 10-215 (218)
87 PF09325 Vps5: Vps5 C terminal 98.0 0.0017 3.7E-08 61.0 21.7 159 88-266 64-234 (236)
88 KOG2222 Uncharacterized conser 98.0 8.4E-07 1.8E-11 90.0 -0.9 59 315-373 546-604 (848)
89 cd07624 BAR_SNX7_30 The Bin/Am 97.9 0.0013 2.9E-08 60.9 18.8 148 88-265 47-197 (200)
90 cd07589 BAR_DNMBP The Bin/Amph 97.9 0.00082 1.8E-08 62.2 17.2 176 48-262 8-186 (195)
91 cd07664 BAR_SNX2 The Bin/Amphi 97.9 0.011 2.4E-07 56.3 24.3 164 87-266 61-230 (234)
92 cd07623 BAR_SNX1_2 The Bin/Amp 97.9 0.0083 1.8E-07 56.7 23.3 206 31-266 7-220 (224)
93 PF06730 FAM92: FAM92 protein; 97.8 0.0055 1.2E-07 57.5 21.2 163 85-271 48-211 (219)
94 cd07625 BAR_Vps17p The Bin/Amp 97.8 0.0081 1.8E-07 57.1 22.6 211 20-265 4-227 (230)
95 KOG4278 Protein tyrosine kinas 97.8 2.4E-05 5.2E-10 82.4 4.5 56 318-374 91-148 (1157)
96 KOG2528 Sorting nexin SNX9/SH3 97.7 1.1E-05 2.5E-10 81.3 1.5 60 319-378 4-65 (490)
97 cd07627 BAR_Vps5p The Bin/Amph 97.7 0.025 5.3E-07 53.1 23.8 160 87-266 43-214 (216)
98 KOG1451 Oligophrenin-1 and rel 97.7 4.3E-05 9.3E-10 79.5 4.9 101 60-161 32-136 (812)
99 KOG4773 NADPH oxidase [Energy 97.7 5.9E-06 1.3E-10 81.1 -1.3 62 316-377 174-235 (386)
100 cd07628 BAR_Atg24p The Bin/Amp 97.6 0.017 3.8E-07 53.0 20.5 125 106-265 58-182 (185)
101 KOG3876 Arfaptin and related p 97.6 0.011 2.3E-07 56.6 18.7 218 18-270 108-325 (341)
102 KOG0521 Putative GTPase activa 97.5 0.0027 5.8E-08 70.0 16.0 164 77-262 50-213 (785)
103 cd07666 BAR_SNX7 The Bin/Amphi 97.5 0.056 1.2E-06 51.8 22.9 151 89-265 88-240 (243)
104 cd07665 BAR_SNX1 The Bin/Amphi 97.4 0.034 7.5E-07 53.0 20.8 162 88-265 62-229 (234)
105 cd07622 BAR_SNX4 The Bin/Amphi 97.4 0.017 3.7E-07 53.7 17.7 151 88-268 47-199 (201)
106 cd07629 BAR_Atg20p The Bin/Amp 97.3 0.071 1.5E-06 49.0 20.0 144 88-267 38-186 (187)
107 cd07667 BAR_SNX30 The Bin/Amph 97.2 0.093 2E-06 50.1 21.1 151 89-265 85-237 (240)
108 KOG4575 TGc (transglutaminase/ 97.2 0.00036 7.9E-09 73.2 4.7 57 317-373 8-66 (874)
109 KOG3557 Epidermal growth facto 97.2 0.0002 4.3E-09 75.4 2.4 58 317-375 500-558 (721)
110 KOG1451 Oligophrenin-1 and rel 97.2 0.023 4.9E-07 59.8 17.0 54 319-372 758-812 (812)
111 KOG3632 Peripheral benzodiazep 97.1 0.00032 7E-09 76.7 3.8 55 318-372 1139-1202(1335)
112 KOG3565 Cdc42-interacting prot 97.0 0.00043 9.4E-09 74.4 3.2 60 314-373 575-637 (640)
113 cd07630 BAR_SNX_like The Bin/A 97.0 0.3 6.5E-06 45.4 22.5 183 34-263 2-193 (198)
114 cd07621 BAR_SNX5_6 The Bin/Amp 96.8 0.48 1E-05 44.8 21.2 55 87-145 63-117 (219)
115 KOG3775 Mitogen-activated prot 96.6 0.001 2.2E-08 66.2 2.2 56 318-373 263-320 (482)
116 cd07661 BAR_ICA69 The Bin/Amph 96.6 0.32 6.9E-06 45.1 18.0 182 64-267 18-202 (204)
117 KOG0609 Calcium/calmodulin-dep 96.6 0.00086 1.9E-08 69.6 1.2 54 318-371 215-280 (542)
118 KOG0197 Tyrosine kinases [Sign 96.5 0.0012 2.6E-08 68.3 2.1 56 317-372 11-69 (468)
119 KOG3632 Peripheral benzodiazep 96.5 0.0057 1.2E-07 67.3 7.0 58 317-374 447-512 (1335)
120 cd07658 F-BAR_NOSTRIN The F-BA 96.4 0.54 1.2E-05 44.8 19.0 94 47-146 4-99 (239)
121 cd07663 BAR_SNX5 The Bin/Amphi 96.3 1 2.2E-05 42.6 23.8 97 31-145 18-116 (218)
122 KOG3601 Adaptor protein GRB2, 96.1 0.00088 1.9E-08 62.1 -1.3 52 320-371 3-55 (222)
123 smart00721 BAR BAR domain. 96.0 0.43 9.3E-06 44.5 16.2 151 34-217 26-192 (239)
124 cd07597 BAR_SNX8 The Bin/Amphi 95.9 1.6 3.6E-05 41.7 20.3 193 47-267 28-244 (246)
125 cd07651 F-BAR_PombeCdc15_like 95.6 2.2 4.7E-05 40.4 20.5 94 47-146 4-97 (236)
126 cd07609 BAR_SIP3_fungi The Bin 95.1 0.86 1.9E-05 42.9 14.4 65 103-168 56-121 (214)
127 cd07648 F-BAR_FCHO The F-BAR ( 95.0 3.6 7.8E-05 39.5 23.1 91 47-146 4-96 (261)
128 cd07610 FCH_F-BAR The Extended 94.9 2.7 5.9E-05 37.8 19.4 96 49-152 1-98 (191)
129 cd07662 BAR_SNX6 The Bin/Amphi 94.8 3.7 8E-05 38.8 22.8 94 34-145 21-116 (218)
130 cd07673 F-BAR_FCHO2 The F-BAR 94.8 4.3 9.2E-05 39.5 23.5 91 47-146 11-103 (269)
131 KOG0040 Ca2+-binding actin-bun 94.7 0.052 1.1E-06 62.4 5.9 60 316-375 967-1026(2399)
132 cd07653 F-BAR_CIP4-like The F- 94.3 5 0.00011 38.1 20.8 96 48-146 5-102 (251)
133 KOG0199 ACK and related non-re 94.1 0.043 9.2E-07 59.4 3.5 49 322-370 379-430 (1039)
134 cd07657 F-BAR_Fes_Fer The F-BA 93.9 6.3 0.00014 37.6 22.2 98 51-153 8-107 (237)
135 PF08239 SH3_3: Bacterial SH3 93.5 0.15 3.3E-06 36.7 4.6 36 335-370 18-55 (55)
136 cd07594 BAR_Endophilin_B The B 93.4 0.2 4.3E-06 47.7 6.4 140 22-168 3-158 (229)
137 cd07647 F-BAR_PSTPIP The F-BAR 93.3 7.6 0.00017 36.8 18.2 90 47-145 4-95 (239)
138 PF14603 hSH3: Helically-exten 93.2 0.13 2.8E-06 41.5 4.1 44 329-372 28-72 (89)
139 cd07615 BAR_Endophilin_A3 The 93.1 5.3 0.00011 37.9 15.4 125 34-166 6-151 (223)
140 cd07674 F-BAR_FCHO1 The F-BAR 92.7 9.9 0.00021 36.6 23.6 91 47-145 4-95 (261)
141 cd07593 BAR_MUG137_fungi The B 92.3 6.3 0.00014 37.2 14.8 170 49-263 8-188 (215)
142 cd07626 BAR_SNX9_like The Bin/ 92.1 10 0.00022 35.3 18.5 66 87-153 44-114 (199)
143 cd07592 BAR_Endophilin_A The B 92.0 7.3 0.00016 36.9 14.8 126 34-167 6-152 (223)
144 PF03114 BAR: BAR domain; Int 91.8 9.6 0.00021 34.5 15.9 65 117-194 93-157 (229)
145 cd07675 F-BAR_FNBP1L The F-BAR 91.7 13 0.00029 35.9 23.0 101 48-153 5-108 (252)
146 cd07681 F-BAR_PACSIN3 The F-BA 91.4 14 0.00031 35.7 23.5 38 105-142 60-97 (258)
147 KOG3651 Protein kinase C, alph 91.0 5.9 0.00013 39.2 13.2 159 87-266 171-341 (429)
148 cd07655 F-BAR_PACSIN The F-BAR 90.8 16 0.00034 35.2 18.8 89 51-144 8-99 (258)
149 KOG3812 L-type voltage-depende 90.8 0.11 2.5E-06 51.5 1.4 36 331-366 79-117 (475)
150 smart00287 SH3b Bacterial SH3 90.4 0.42 9.1E-06 35.2 3.9 35 335-369 26-61 (63)
151 PRK10884 SH3 domain-containing 89.7 0.34 7.3E-06 45.4 3.5 38 335-372 49-88 (206)
152 cd07685 F-BAR_Fes The F-BAR (F 89.0 22 0.00048 34.0 17.4 148 87-268 80-227 (237)
153 KOG2996 Rho guanine nucleotide 88.1 0.31 6.7E-06 51.6 2.3 61 316-376 603-672 (865)
154 cd07686 F-BAR_Fer The F-BAR (F 87.9 26 0.00056 33.5 20.7 78 86-168 40-119 (234)
155 cd07649 F-BAR_GAS7 The F-BAR ( 87.5 27 0.00058 33.3 22.2 92 47-146 4-97 (233)
156 PF06347 SH3_4: Bacterial SH3 86.6 1.3 2.8E-05 32.0 4.3 34 335-369 20-53 (55)
157 cd07676 F-BAR_FBP17 The F-BAR 86.3 33 0.00071 33.1 22.1 101 48-153 5-109 (253)
158 KOG3705 Glycoprotein 6-alpha-L 83.5 0.91 2E-05 46.3 2.9 53 319-371 511-565 (580)
159 cd07672 F-BAR_PSTPIP2 The F-BA 81.5 51 0.0011 31.5 20.0 92 47-146 4-97 (240)
160 cd07650 F-BAR_Syp1p_like The F 81.1 50 0.0011 31.2 23.1 90 50-146 7-99 (228)
161 KOG4384 Uncharacterized SAM do 80.4 3 6.4E-05 41.9 5.2 56 318-373 137-194 (361)
162 cd07671 F-BAR_PSTPIP1 The F-BA 79.2 61 0.0013 31.0 21.7 93 46-146 3-96 (242)
163 KOG2008 BTK-associated SH3-dom 79.0 73 0.0016 31.8 20.2 39 237-275 195-233 (426)
164 cd07680 F-BAR_PACSIN1 The F-BA 76.6 77 0.0017 30.7 22.6 86 51-141 8-96 (258)
165 KOG2273 Membrane coat complex 70.7 1.4E+02 0.0031 31.3 19.7 61 88-153 314-376 (503)
166 PF11302 DUF3104: Protein of u 70.3 4.9 0.00011 31.6 3.0 25 333-357 3-33 (75)
167 COG3103 SH3 domain protein [Si 69.6 6.3 0.00014 36.9 4.1 37 335-371 49-87 (205)
168 cd07677 F-BAR_FCHSD2 The F-BAR 68.7 1.2E+02 0.0026 29.5 16.6 141 110-267 71-239 (260)
169 cd07599 BAR_Rvs167p The Bin/Am 68.4 65 0.0014 29.9 10.8 66 109-191 68-133 (216)
170 cd07652 F-BAR_Rgd1 The F-BAR ( 67.4 1.1E+02 0.0025 28.9 18.4 47 104-153 60-106 (234)
171 PRK13914 invasion associated s 65.4 7.5 0.00016 40.9 4.1 38 335-372 104-142 (481)
172 KOG0994 Extracellular matrix g 65.2 2.9E+02 0.0062 32.7 17.0 27 48-74 1542-1568(1758)
173 TIGR03042 PS_II_psbQ_bact phot 63.8 1.1E+02 0.0023 27.2 12.0 44 139-185 54-98 (142)
174 PF10456 BAR_3_WASP_bdg: WASP- 63.8 1.4E+02 0.003 28.6 12.8 38 87-124 81-121 (237)
175 cd07669 BAR_SNX33 The Bin/Amph 61.2 1.5E+02 0.0032 27.9 15.0 69 87-157 52-126 (207)
176 PLN02956 PSII-Q subunit 60.0 68 0.0015 29.6 8.7 45 139-186 98-143 (185)
177 PF12913 SH3_6: SH3 domain of 57.9 19 0.00042 26.5 4.0 32 335-366 22-54 (54)
178 KOG3208 SNARE protein GS28 [In 56.6 35 0.00076 32.3 6.4 17 2-18 8-24 (231)
179 PF13805 Pil1: Eisosome compon 54.4 2.2E+02 0.0048 27.9 18.1 59 87-159 82-140 (271)
180 cd07614 BAR_Endophilin_A2 The 53.7 40 0.00086 32.0 6.5 125 34-166 6-151 (223)
181 smart00743 Agenet Tudor-like d 53.4 17 0.00036 26.6 3.1 23 335-357 2-24 (61)
182 TIGR03545 conserved hypothetic 52.6 2E+02 0.0044 31.0 12.3 76 141-221 152-231 (555)
183 cd07617 BAR_Endophilin_B2 The 52.3 33 0.00072 32.5 5.6 141 20-168 1-158 (220)
184 cd07656 F-BAR_srGAP The F-BAR 51.6 2.2E+02 0.0048 27.1 15.8 18 240-257 206-223 (241)
185 cd07608 BAR_ArfGAP_fungi The B 50.7 2.1E+02 0.0046 26.6 15.3 121 114-260 60-183 (192)
186 KOG1924 RhoA GTPase effector D 48.0 1.2E+02 0.0026 34.0 9.6 44 21-76 175-221 (1102)
187 PF00611 FCH: Fes/CIP4, and EF 42.4 60 0.0013 25.1 5.0 81 48-132 9-91 (91)
188 KOG1853 LIS1-interacting prote 41.2 3.5E+02 0.0076 26.4 12.2 23 124-146 17-42 (333)
189 KOG4270 GTPase-activator prote 41.1 6 0.00013 42.5 -1.3 53 107-160 2-54 (577)
190 cd07668 BAR_SNX9 The Bin/Amphi 38.4 3.5E+02 0.0075 25.5 15.7 69 87-157 52-126 (210)
191 PF04642 DUF601: Protein of un 36.1 4.2E+02 0.0091 25.8 11.5 18 242-259 292-309 (311)
192 KOG0624 dsRNA-activated protei 33.7 2.8E+02 0.0061 28.5 9.1 26 201-226 430-455 (504)
193 KOG0971 Microtubule-associated 33.0 8.3E+02 0.018 28.3 16.4 59 149-226 387-449 (1243)
194 cd07679 F-BAR_PACSIN2 The F-BA 32.8 4.7E+02 0.01 25.4 22.5 30 241-270 221-254 (258)
195 PF08103 Antimicrobial_8: Uper 31.5 42 0.0009 18.8 1.6 12 2-13 4-15 (17)
196 cd07595 BAR_RhoGAP_Rich-like T 30.9 4.8E+02 0.01 24.9 13.6 119 34-168 14-146 (244)
197 cd07596 BAR_SNX The Bin/Amphip 29.3 4.1E+02 0.009 23.7 19.8 21 114-134 62-82 (218)
198 cd07670 BAR_SNX18 The Bin/Amph 28.9 5E+02 0.011 24.5 15.0 69 87-157 52-126 (207)
199 KOG1314 DHHC-type Zn-finger pr 28.6 45 0.00097 33.8 2.6 43 329-372 329-383 (414)
200 PF00575 S1: S1 RNA binding do 26.6 99 0.0021 22.9 3.7 36 336-371 2-39 (74)
201 TIGR01834 PHA_synth_III_E poly 25.2 3.2E+02 0.007 27.4 7.9 63 105-168 252-314 (320)
202 PF11172 DUF2959: Protein of u 24.8 5.8E+02 0.013 23.9 15.8 52 114-168 30-82 (201)
203 KOG3771 Amphiphysin [Intracell 24.5 8.5E+02 0.018 25.7 16.6 55 316-370 399-454 (460)
204 cd07652 F-BAR_Rgd1 The F-BAR ( 24.1 5.6E+02 0.012 24.2 9.1 71 87-168 41-111 (234)
205 PRK13545 tagH teichoic acids e 22.3 82 0.0018 33.9 3.3 35 338-372 374-414 (549)
206 KOG3580 Tight junction protein 22.0 1.3E+02 0.0027 32.9 4.5 51 316-366 503-562 (1027)
207 KOG4673 Transcription factor T 22.0 1.2E+03 0.025 26.3 14.2 33 239-271 523-555 (961)
208 cd05705 S1_Rrp5_repeat_hs14 S1 22.0 1.7E+02 0.0037 22.3 4.3 31 336-366 1-33 (74)
209 PF06160 EzrA: Septation ring 20.5 1.1E+03 0.023 25.4 17.7 136 106-271 95-233 (560)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=2.1e-57 Score=402.06 Aligned_cols=208 Identities=69% Similarity=0.983 Sum_probs=203.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~ 127 (384)
|+|||||.||+++|||||+|||++|||+++|++|+|++++|+++|++||.|++ +.++.+++|.+.||.++++|++++++
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~ 79 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN 79 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999997 57788999999999999999999999
Q ss_pred HHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA 207 (384)
Q Consensus 128 ~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a 207 (384)
|++.+++++++|||.|+.|+||+|+||+++||||||||.|+ ++.|+.+|+.|.+|..+++++..||+.|
T Consensus 80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~-----------qa~eV~RRq~k~res~~~~e~~~KL~~A 148 (209)
T cd07607 80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEA-----------QAAEVARRRSKDKESGGNPDNAAKLQSA 148 (209)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999998999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 267 (384)
Q Consensus 208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~ 267 (384)
|.|++|++++|..||+|+..+|..||.|||++|+++|.++|+|+..||++...||++|+.
T Consensus 149 E~Kl~elks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~ 208 (209)
T cd07607 149 ESKLDELKSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD 208 (209)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999875
No 2
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-54 Score=404.72 Aligned_cols=313 Identities=24% Similarity=0.416 Sum_probs=260.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCC--CcccccchHHHh-hhHHHHHHHHHhhhhhhhHH------------HHhhhhcccc
Q 016699 11 LREQVARQQQAVFKQFGGGGYGG--SDNVVTDEAELH-QHQRLERLYISTRAGKHFQR------------DIVRGVEGYI 75 (384)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~~--~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~------------~i~r~~e~~~ 75 (384)
++.||+|.+|-+-.++||.. |. .|+|.-.|-|+. +..++.+|+++|.. |.. +++..+.|.+
T Consensus 1 m~kqF~ka~Q~~sEK~ggae-~TkLdDdF~eme~~vdvt~~~v~~i~~~tte---ylqpnpa~rakl~~~n~lsKvrG~~ 76 (366)
T KOG1118|consen 1 MKKQFNKASQWTSEKVGGAE-GTKLDDDFLEMEKEVDVTSKGVTKILAKTTE---YLQPNPASRAKLAMLNTLSKVRGQV 76 (366)
T ss_pred CchHHHHHHHHhcccccccc-CCcCChHHHHHHHhHHHHHHHHHHHHHhhHH---hcCCChhhhhHHHHHHHHHHhcccc
Confidence 35688888888888887643 23 899998999988 99999999988876 888 9999999975
Q ss_pred c-CCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-
Q 016699 76 V-TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR- 153 (384)
Q Consensus 76 ~-~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~- 153 (384)
. ++|+|.|+ +||++|++||.++| .+|.||.+|+.+|+++++|+++++.|..++.++||+||.++... ++|++.
T Consensus 77 k~~~ypq~e~--~Lg~~mik~gkeLg--~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~-elK~i~h 151 (366)
T KOG1118|consen 77 KEKGYPQTEG--LLGDVMIKHGKELG--DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLK-ELKDIQH 151 (366)
T ss_pred cCCCCccchh--HHHHHHHHHHHhcC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH-HHHHHHH
Confidence 4 49999999 99999999999999 99999999999999999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016699 154 HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA 230 (384)
Q Consensus 154 ~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~ 230 (384)
|++| ||+ ||||+ ++|+.|.+|+ ++|.|.+||+|+++. +..+|+
T Consensus 152 h~KK--------LEg-----------RRldyD~kkkk~~K~~dE--------elrqA~eKfEESkE~-------aE~sM~ 197 (366)
T KOG1118|consen 152 HRKK--------LEG-----------RRLDYDYKKKKQGKIKDE--------ELRQALEKFEESKEL-------AEDSMF 197 (366)
T ss_pred HHHH--------hhh-----------hhhHHHHHHHHhccCChH--------HHHHHHHHHHHHHHH-------HHHHHH
Confidence 9998 999 99966 6677887766 999999999999988 888888
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC----CCC----CCCCCCCCCC
Q 016699 231 -----AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPT----PSV----DTMPPPPAYE 297 (384)
Q Consensus 231 -----~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p~----p~~----~~~pp~~s~~ 297 (384)
++|+ +++|.+|++||++||+++..||+.|+..+.+ ++..+++.|. |.+ ...|.-|+ .
T Consensus 198 nlle~d~eq------vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~---r~r~a~~~prrey~p~~~~an~f~p~~~p-~ 267 (366)
T KOG1118|consen 198 NLLENDVEQ------VSQLSALIQAQLDFHRQSTQILQELQMKLFS---RIRDASSQPRREYVPRSVLANEFAPSGPP-I 267 (366)
T ss_pred HHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhcCchhhcCCcccccccCCCCCCc-c
Confidence 4455 9999999999999999999999999999987 5655555442 111 01110000 0
Q ss_pred CCCCcC----------------CCC---CCCCCCCCCCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC
Q 016699 298 EVNGIY----------------ASQ---THNGSTDAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK 358 (384)
Q Consensus 298 ~~~~~~----------------~~~---s~~~~~~~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~ 358 (384)
..++.. ++. +|+.+..+...++|+++|||++++++||.|++||+|+|++..|+|||+|+..
T Consensus 268 ~~~g~~s~T~~t~~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~ 347 (366)
T KOG1118|consen 268 QLNGKLSKTTSTPQSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKH 347 (366)
T ss_pred ccCCCCCcCccCccccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheec
Confidence 011100 001 1111113567789999999999999999999999999999999999999999
Q ss_pred CeeeEecCCCeeeccCCC
Q 016699 359 GKAGWFPFGYIERRDRVL 376 (384)
Q Consensus 359 G~~G~fP~~YVe~l~~~p 376 (384)
|..|+||.|||+++.|+|
T Consensus 348 g~sG~FPvnYv~vlvpl~ 365 (366)
T KOG1118|consen 348 GESGMFPVNYVEVLVPLP 365 (366)
T ss_pred CccCccccceeEEeccCC
Confidence 999999999999999886
No 3
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-49 Score=364.76 Aligned_cols=322 Identities=18% Similarity=0.257 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccC-CCccc
Q 016699 4 IRKQATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVT-GSKQV 82 (384)
Q Consensus 4 ~~~~~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~-~~~~~ 82 (384)
++|-||---.=|.|.-|.-=.+|| ..+.+ | -..|||||+.++++||+|+++|++++|+|++| +..++
T Consensus 5 ~KKlAsDAG~FfsRAvQfTEEkfg-----qAEkT-----E--LDaHfENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~ 72 (375)
T KOG3725|consen 5 FKKLASDAGGFFSRAVQFTEEKFG-----QAEKT-----E--LDAHFENLLQRADKTKDWTEKILSQTEVLLQPNPTARM 72 (375)
T ss_pred HHHHhhhcchHHHHHHHHhHHHhh-----hhhHh-----h--HHHHHHHHHHHhhhhhHHHHHHHHhhheecCCCcchhH
Confidence 456666666666777666666665 22221 2 35789999999999999999999999999999 55565
Q ss_pred c----------------hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC
Q 016699 83 E----------------IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 83 e----------------~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
| +++.|+++|+.+|.||| ++++||+||++||++.++|+.+.++|+.....+||.|||+|++|
T Consensus 73 EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEG 150 (375)
T KOG3725|consen 73 EEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEG 150 (375)
T ss_pred HHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhc
Confidence 4 78899999999999999 99999999999999999999999999999999999999999999
Q ss_pred CChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCC----CC---------CchHHhHHHHHH
Q 016699 147 APLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETP----GN---------PDLALKLDAAEV 209 (384)
Q Consensus 147 ~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~----~~---------~~~~~kl~~ae~ 209 (384)
|||+|. +|+. |++ +|||+ |.|.+|.+... ++ ..+++++|.|+.
T Consensus 151 -D~KTI~KERkl--------Lqn-----------kRLDLDAcKsRLKKAKaae~q~~rN~~~s~~~~ie~aEqelRvaQ~ 210 (375)
T KOG3725|consen 151 -DMKTIQKERKL--------LQN-----------KRLDLDACKSRLKKAKAAELQTVRNSKTSGGFTIEQAEQELRVAQA 210 (375)
T ss_pred -cHHHHHHHHHH--------Hhh-----------cccChHHHHHHHHHhhhhhhhccccccccCcchHhHHHHHHHHHHH
Confidence 999999 7777 999 99866 44444432211 11 146899999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCC
Q 016699 210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQRIEAAPTAPTPSVDT 289 (384)
Q Consensus 210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr~~s~s~~p~p~~~~ 289 (384)
+|+.+.+++++| .|.+.+. ++.+ |+||..||+||+.||.+|++.|-+|+.+|.. +.+.-.... ...+
T Consensus 211 EFDrQaEiTrLL-LEGIsst-H~nh------LrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~----fps~~~s~~-~~~s 277 (375)
T KOG3725|consen 211 EFDRQAEITRLL-LEGISST-HNNH------LRCLRDFVEAQMTYYAQCYQLMLDLQKQLGG----FPSFRGSSA-ILVS 277 (375)
T ss_pred HHhHHHHHHHHH-HHhhhhh-hhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Ccccccccc-cccC
Confidence 999999999988 4555443 4555 9999999999999999999999999999985 322111000 0001
Q ss_pred CCCCCCCCCC-CCcCCCCCCC----CCC-------CCCCcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEE
Q 016699 290 MPPPPAYEEV-NGIYASQTHN----GST-------DAMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEG 355 (384)
Q Consensus 290 ~pp~~s~~~~-~~~~~~~s~~----~~~-------~~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G 355 (384)
+.|.|+..+. .+...+..|+ .++ ...+..+++|||||++..+.||++..+|+|+|++. +|.+|+.|
T Consensus 278 ~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmg 357 (375)
T KOG3725|consen 278 NSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMG 357 (375)
T ss_pred CCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhh
Confidence 1111111100 0000000010 011 13456789999999999999999999999999987 58899999
Q ss_pred EeCCeeeEecCCCeeec
Q 016699 356 ECKGKAGWFPFGYIERR 372 (384)
Q Consensus 356 ~~~G~~G~fP~~YVe~l 372 (384)
+++|++|.+|.+|++.+
T Consensus 358 ErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 358 ERGNKKGKVPVTYLELL 374 (375)
T ss_pred hhcCCCCCcchhHHHhc
Confidence 99999999999999875
No 4
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=100.00 E-value=1.4e-34 Score=268.43 Aligned_cols=193 Identities=17% Similarity=0.256 Sum_probs=163.9
Q ss_pred cCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccc----------------cchhhHHH
Q 016699 27 GGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQ----------------VEIGTKLS 89 (384)
Q Consensus 27 ~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~----------------~e~~~~l~ 89 (384)
-.+.+|+++.+..|+ +|+.|-..+++||.|+++|++++|.|++|+ ..+ +-..+.||
T Consensus 3 ~~EkiG~AE~Teld~-------df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg 75 (220)
T cd07617 3 TEEKLGQAEKTELDA-------HFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLG 75 (220)
T ss_pred chhhccCccCCcCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHH
Confidence 345556677777655 578888889999999999999999999986 222 22345899
Q ss_pred HHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHH
Q 016699 90 EDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEA 168 (384)
Q Consensus 90 ~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~ 168 (384)
++|++||.+|| ++|+||.||++||+|+++|+.++++|+..+.++||+||++++++ |||+|. +|+| |++
T Consensus 76 ~~M~~~g~~~g--~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~-dlk~i~k~RKk--------Le~ 144 (220)
T cd07617 76 QYMTEAANDFG--PGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG-DWKTISKERRL--------LQN 144 (220)
T ss_pred HHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH
Confidence 99999999999 99999999999999999999999999999999999999999999 999999 8888 999
Q ss_pred hhhhhccCCcccHHHH--HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHH
Q 016699 169 QLVISSSLKPSQAIEV--SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTL 241 (384)
Q Consensus 169 ~~~~~~~l~~~rrld~--kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l 241 (384)
+|||+ +|.+.++ ++.+++.|+.||+++++. +...|.. +++ |
T Consensus 145 -----------rRLd~D~~K~r~~k--------ae~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~------l 192 (220)
T cd07617 145 -----------RRLDLDACKARLKK--------AEHELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH------L 192 (220)
T ss_pred -----------HHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH------H
Confidence 99977 3333222 134999999999999998 5555553 455 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 242 QRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
++|.+||+||++||.+|+++|.+|+.+|
T Consensus 193 ~~L~~lv~AQl~Yh~q~~e~L~~l~~~~ 220 (220)
T cd07617 193 RCLHEFVEAQATYYAQCYRHMLDLQKQL 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998754
No 5
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=100.00 E-value=3.2e-34 Score=268.18 Aligned_cols=202 Identities=17% Similarity=0.275 Sum_probs=169.9
Q ss_pred hcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccccc----------------hhhHH
Q 016699 26 FGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQVE----------------IGTKL 88 (384)
Q Consensus 26 ~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~~e----------------~~~~l 88 (384)
|-.+.+|+++.+..|+ +|++|-..+++||.|+++|+++++.|++|+ ..+.| ..+.|
T Consensus 2 ~~~EkiG~AE~Te~d~-------df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~L 74 (229)
T cd07616 2 FTEEKFGQAEKTELDA-------HLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELL 74 (229)
T ss_pred cchhhccCccCCcccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHH
Confidence 3345566777777655 688888899999999999999999999985 22222 34599
Q ss_pred HHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHH
Q 016699 89 SEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAE 167 (384)
Q Consensus 89 ~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele 167 (384)
|++|++||.+|| ++|+||.||++||+|+++|+.++.+|+..+.++|+.||++++++ |||+|. +|++ |+
T Consensus 75 g~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~-dik~i~k~RKk--------Le 143 (229)
T cd07616 75 GQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG-DYKTITKERKL--------LQ 143 (229)
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HH
Confidence 999999999999 99999999999999999999999999999999999999999999 999999 8888 99
Q ss_pred HhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHH
Q 016699 168 AQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRL 239 (384)
Q Consensus 168 ~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~ 239 (384)
+ +|||+ |.|.+|.+........+.+++.|+.||+++.+. +...|.. +++
T Consensus 144 ~-----------rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~----- 200 (229)
T cd07616 144 N-----------KRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH----- 200 (229)
T ss_pred H-----------HHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH-----
Confidence 9 99977 444444433333444578999999999999999 4444443 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 240 TLQRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 240 ~l~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
+++|..||+||++||.+|.++|.+|+.+|
T Consensus 201 -~~~L~~lv~AQl~Yh~~~~e~L~~L~~~l 229 (229)
T cd07616 201 -LRCLNDFVEAQMTYYAQCYQYMLDLQKQL 229 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998764
No 6
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=100.00 E-value=9.9e-34 Score=263.64 Aligned_cols=178 Identities=22% Similarity=0.298 Sum_probs=158.2
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG 104 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~ 104 (384)
+|++|-.++++||.|+++|+++++.|++|+ ||+++. .||++|++||.+|| ++
T Consensus 8 ~f~~le~k~D~t~~~~~~i~~~t~~~LQPNpa~r~k~~~~~~~~K~~g~~K~~~~p~~~~--~Lg~~M~~~G~elg--~d 83 (223)
T cd07613 8 DFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEA--LLAEAMLKFGRELG--DE 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhhccccCCCCCChHh--HHHHHHHHHHhhCC--CC
Confidence 678888899999999999999999999886 333344 89999999999999 99
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE 183 (384)
Q Consensus 105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld 183 (384)
|+||.||++||+|+++|+.++++|+..+.++||+||++++++ |+|+|. +|+| |++ +|||
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~-dik~i~k~RKk--------Le~-----------rRLd 143 (223)
T cd07613 84 CNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDK-DLREIQHHLKK--------LEG-----------RRLD 143 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHh
Confidence 999999999999999999999999999999999999999999 999999 8888 999 9997
Q ss_pred H--HH-HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 184 V--SK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYH 255 (384)
Q Consensus 184 ~--kk-r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh 255 (384)
+ +| |..|. ++.+++.|+.||+++++. +...|.. +++ +++|.+||+||++||
T Consensus 144 ~D~~K~r~~k~--------~eeElr~A~~kFees~E~-------a~~~M~n~l~~e~e~------~~~L~~fveAQl~Yh 202 (223)
T cd07613 144 FDYKKKRQGKI--------PDEELRQALEKFDESKEI-------AESSMFNLLEMDIEQ------VSQLSALVQAQLEYH 202 (223)
T ss_pred HHHHHHhCCCC--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCchH------HHHHHHHHHHHHHHH
Confidence 7 33 33332 245999999999999998 6666663 344 999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016699 256 QRVLQILDQLEGEMLS 271 (384)
Q Consensus 256 ~q~~~iL~qL~~eL~~ 271 (384)
++|..+|.+|...|..
T Consensus 203 ~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 203 KQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 7
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=100.00 E-value=1.1e-33 Score=265.48 Aligned_cols=203 Identities=17% Similarity=0.291 Sum_probs=172.5
Q ss_pred HhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccc----------------cchhhH
Q 016699 25 QFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQ----------------VEIGTK 87 (384)
Q Consensus 25 ~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~----------------~e~~~~ 87 (384)
||.++++|+.+.+-.|+ +|+.|-..++.+|.|+++|.+.++.|++|+ ..+ .-..+.
T Consensus 1 Q~~~Ek~G~aEkTe~d~-------df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~ 73 (229)
T cd07594 1 QFTEEKLGTAEKTEYDA-------HFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ 73 (229)
T ss_pred CcchhhccccccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH
Confidence 68888998888877654 577888889999999999999999999873 111 112348
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHH
Q 016699 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEA 166 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~el 166 (384)
||++|++||.+|| ++|+||.||++||+|+++|+.++.+|+..+.++||+||++++++ |+|+|. +|++ |
T Consensus 74 Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~-dik~i~k~RKk--------L 142 (229)
T cd07594 74 LGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEG-DMKTISKERKL--------L 142 (229)
T ss_pred HHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------H
Confidence 9999999999999 99999999999999999999999999999999999999999999 999999 8888 9
Q ss_pred HHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHH
Q 016699 167 EAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQR 238 (384)
Q Consensus 167 e~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~ 238 (384)
++ +|||+ +.|.+|.+.....+..+.+++.|+.||+++.+. +...|..| ++
T Consensus 143 e~-----------rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~---- 200 (229)
T cd07594 143 EN-----------KRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH---- 200 (229)
T ss_pred HH-----------HHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH----
Confidence 99 99977 445454332222356788999999999999999 66666633 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 239 LTLQRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 239 ~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
+++|.+||+||++||.+|+++|.+|...|
T Consensus 201 --~~~L~~lv~AQl~Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 201 --LRCLRDFVEAQMTYYAQCYQYMDDLQRQL 229 (229)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998764
No 8
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=100.00 E-value=7.7e-33 Score=257.92 Aligned_cols=178 Identities=21% Similarity=0.319 Sum_probs=155.1
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG 104 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~ 104 (384)
+|++|-..++++|.|+++|++.++.|++|+ ||+.|. .||++|++||.+|| ++
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d 83 (223)
T cd07615 8 DFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEG--LLGDCMLRYGRELG--EE 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchh--HHHHHHHHHHhhCC--CC
Confidence 566777778888888888888888887753 555555 89999999999999 99
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE 183 (384)
Q Consensus 105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld 183 (384)
|+||.||++||+|+++|+.++++|+..+.++||+||++++++ |+|+|. +|+| |++ +|||
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~-dik~i~k~RKk--------Le~-----------rRLd 143 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDK-DLKEIGHHLKK--------LEG-----------RRLD 143 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHH
Confidence 999999999999999999999999999999999999999999 999999 8888 999 9997
Q ss_pred H--H-HHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 016699 184 V--S-KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAMVEAERTYH 255 (384)
Q Consensus 184 ~--k-kr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~veAql~Yh 255 (384)
+ + +|..|. ...+++.|+.||+++++. +...|..+ +. +++|.+||+||++||
T Consensus 144 ~D~~K~r~~k~--------~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~------~~~L~~lv~AQl~Yh 202 (223)
T cd07615 144 FDYKKKRQGKI--------PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ------VSQLSVLIEAALDYH 202 (223)
T ss_pred HHHHHHcCCCC--------cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH------HHHHHHHHHHHHHHH
Confidence 7 3 233222 245999999999999988 77788743 44 999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016699 256 QRVLQILDQLEGEMLS 271 (384)
Q Consensus 256 ~q~~~iL~qL~~eL~~ 271 (384)
++|..+|.+|...|..
T Consensus 203 ~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 203 RQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 9
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=100.00 E-value=1.3e-32 Score=256.66 Aligned_cols=178 Identities=22% Similarity=0.340 Sum_probs=157.9
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCC------------------------CcccchhhHHHHHHHHhhccCCCCCC
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTG------------------------SKQVEIGTKLSEDSRKYGSDNTCTSG 104 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~------------------------~~~~e~~~~l~~~m~~~g~e~~~~~~ 104 (384)
+|++|-..+++||.|+.+|+++++.|++|+ ||+++. .||++|++||.+|| ++
T Consensus 8 ~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~--~Lg~~M~~~G~~lg--~d 83 (223)
T cd07614 8 DFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEG--LLGETMIRYGKELG--DE 83 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHh--HHHHHHHHHHhhCC--CC
Confidence 677888889999999999999999999975 444455 89999999999999 99
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIE 183 (384)
Q Consensus 105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld 183 (384)
|+||.||++||+|+++|+.++..|+..+.++||+||++++++ |+|+|. +|+| |++ +|||
T Consensus 84 S~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~RKk--------Le~-----------rRLd 143 (223)
T cd07614 84 SNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDK-DLKEIQHHLKK--------LEG-----------RRLD 143 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHH
Confidence 999999999999999999999999999999999999999999 999999 8888 999 9997
Q ss_pred H--HH-HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 184 V--SK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYH 255 (384)
Q Consensus 184 ~--kk-r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh 255 (384)
+ +| |..|. .+.+++.|++||+++.+. +...|.. +++ +++|..||+||++||
T Consensus 144 yD~~K~r~~k~--------~eeelr~a~ekFees~E~-------a~~~M~~il~~e~e~------~~~L~~lveAQl~Yh 202 (223)
T cd07614 144 FDYKKKRQGKI--------PDEELRQAMEKFEESKEV-------AETSMHNLLETDIEQ------VSQLSALVDAQLDYH 202 (223)
T ss_pred HHHHHHcCCCC--------chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCChHH------HHHHHHHHHHHHHHH
Confidence 7 32 32221 135999999999999999 6666663 344 999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016699 256 QRVLQILDQLEGEMLS 271 (384)
Q Consensus 256 ~q~~~iL~qL~~eL~~ 271 (384)
++|..+|.+|..+|..
T Consensus 203 ~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 203 RQAVQILDELAEKLKR 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999986
No 10
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.97 E-value=9.1e-31 Score=245.08 Aligned_cols=178 Identities=24% Similarity=0.334 Sum_probs=147.9
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhcccccC------------------------CCcccchhhHHHHHHHHhhccCCCCCCC
Q 016699 50 LERLYISTRAGKHFQRDIVRGVEGYIVT------------------------GSKQVEIGTKLSEDSRKYGSDNTCTSGN 105 (384)
Q Consensus 50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~------------------------~~~~~e~~~~l~~~m~~~g~e~~~~~~~ 105 (384)
|+.|-..++.++.|+++|++.++.|++| +||+++. .||++|++||.+|| ++|
T Consensus 9 f~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~--~Lg~~M~~~g~elg--~~S 84 (223)
T cd07592 9 FLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEG--LLGEVMLKYGRELG--EDS 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCccc--HHHHHHHHHHhhcC--CCC
Confidence 4445555566666666666666666643 3677666 89999999999999 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH
Q 016699 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV 184 (384)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~ 184 (384)
+||.||++||+|+.+|+.++.+|+..+.++|++||++++++ |+++|. +|+| |++ +|||+
T Consensus 85 ~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~-dik~i~k~RKk--------Le~-----------rRLdy 144 (223)
T cd07592 85 NFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDK-DLKEINHHRKK--------LEG-----------RRLDY 144 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------HHH-----------HHHHH
Confidence 99999999999999999999999999999999999999999 999999 8888 999 99977
Q ss_pred --HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 185 --SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYHQR 257 (384)
Q Consensus 185 --kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh~q 257 (384)
+|++ ..+ . .+.+++.|+.||+++++. +...|.. +++ +++|..||+||++||++
T Consensus 145 D~~k~k-~~k----~--~eeEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e~------~~~L~~lveAQl~Yh~~ 204 (223)
T cd07592 145 DYKKRK-QGK----G--PDEELKQAEEKFEESKEL-------AENSMFNLLENDVEQ------VSQLSALVEAQLDYHRQ 204 (223)
T ss_pred HHHHHh-ccc----C--chHHHHHHHHHHHHHHHH-------HHHHHHHHHhCchHH------HHHHHHHHHHHHHHHHH
Confidence 3322 111 1 246999999999999999 5566653 344 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 016699 258 VLQILDQLEGEMLS 271 (384)
Q Consensus 258 ~~~iL~qL~~eL~~ 271 (384)
|..+|.+|..+|..
T Consensus 205 ~~e~L~~l~~~L~~ 218 (223)
T cd07592 205 SAEILEELQSKLQE 218 (223)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999986
No 11
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.97 E-value=9.9e-30 Score=236.76 Aligned_cols=195 Identities=17% Similarity=0.224 Sum_probs=164.8
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHH
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL 112 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~ 112 (384)
+|+|+..|.+|. +|.++++|+.+|.. |.++|.|..+.--....+-++ +.||++|+.||.+|| ++|+||.||+
T Consensus 6 ~ddf~~le~~~d~~~~~~~~l~~~~~~---y~~~l~k~~~~g~~k~k~~p~--~~Lg~~M~~~g~~lg--~dS~~G~aL~ 78 (215)
T cd07593 6 SEEFLELEKEIELRKEGMERLHRSTEA---YVEYLSKKKPLLDDKDKCLPV--EALGLVMINHGEEFP--QDSEYGSCLS 78 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccCccccccccCChH--HHHHHHHHHHHhhCC--CCChHHHHHH
Confidence 789999999999 99999999999998 999999998521222233344 389999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHh
Q 016699 113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQ 188 (384)
Q Consensus 113 ~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~ 188 (384)
+||+|+.+|+.+++.|+..+.++||+||++++. |+|+|. +|++ |++ +|||+ +.|.
T Consensus 79 ~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~--~~k~i~k~RKk--------Le~-----------rRLdyD~~ksk~ 137 (215)
T cd07593 79 KLGRAHCKIGTLQEEFADRLSDTFLANIERSLA--EMKEYHSARKK--------LES-----------RRLAYDAALTKS 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHH-----------HHHHHHHHHHHH
Confidence 999999999999999999999999999999994 899999 8888 999 99977 2233
Q ss_pred hhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 189 AKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA-----VESQQQRLTLQRLIAMVEAERTYHQRVLQILD 263 (384)
Q Consensus 189 ~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~-----ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~ 263 (384)
.|.+.. ....+.+++.|+.||+++.+. +...|.. +++ +++|..||+||++||++|..+|.
T Consensus 138 ~kak~~--~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~------~~~L~~lv~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 138 QKAKKE--DSRLEEELRRAKAKYEESSED-------VEARMVAIKESEADQ------YRDLTDLLDAELDYHQQSLDVLR 202 (215)
T ss_pred Hhcccc--chhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 245678999999999999999 5666663 344 99999999999999999999999
Q ss_pred HHHHHHHH
Q 016699 264 QLEGEMLS 271 (384)
Q Consensus 264 qL~~eL~~ 271 (384)
+|...+..
T Consensus 203 ~l~~~~~~ 210 (215)
T cd07593 203 EVRQSWPS 210 (215)
T ss_pred HHHHhccC
Confidence 99987653
No 12
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.95 E-value=3e-26 Score=216.45 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=153.8
Q ss_pred CCCCccccc-chHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC-Ccccch------hhHHHHHHHHhhccCCCC
Q 016699 31 YGGSDNVVT-DEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG-SKQVEI------GTKLSEDSRKYGSDNTCT 102 (384)
Q Consensus 31 ~~~~~~~~~-~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~-~~~~e~------~~~l~~~m~~~g~e~~~~ 102 (384)
+|+++.+-. |+ +|+.|-.+++++|.|+.+|.++++.+++|+ ..+.|. .+.||++|.+||.++|
T Consensus 4 ~g~aEkTe~ld~-------~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg-- 74 (248)
T cd07619 4 VGRAEKTEVLSE-------DLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG-- 74 (248)
T ss_pred cccccccccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--
Confidence 345666653 43 678888889999999999999999999984 222220 2279999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccH
Q 016699 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQA 181 (384)
Q Consensus 103 ~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rr 181 (384)
++++||.+|.+||+++++|+.++.+|+..+..+||+||++++++ ||++|. ||++ |++ +|
T Consensus 75 ~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~-dlk~I~k~RK~--------Le~-----------~R 134 (248)
T cd07619 75 DDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEV-EIPNIQKQRKH--------LAK-----------LV 134 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------HHh-----------hH
Confidence 99999999999999999999999999999999999999999999 999999 8888 999 99
Q ss_pred HHH--HH-HhhhhccCCC-------CCchHHhHHHHHHHHHHHHHHHH-HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 016699 182 IEV--SK-RQAKVRETPG-------NPDLALKLDAAEVKLHDLKSNMA-ILGKEAAAAMAA-VESQQQRLTLQRLIAMVE 249 (384)
Q Consensus 182 ld~--kk-r~~k~~e~~~-------~~~~~~kl~~ae~k~~e~~~~~~-~L~~e~~~~~~~-ve~qqq~~~l~~L~a~ve 249 (384)
||+ +| |.......+. +...+.+++.+.+++++..+.-. .+-.++...|.. +|. +..|..||+
T Consensus 135 LD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~------~~~l~~Lv~ 208 (248)
T cd07619 135 LDMDSSRTRWQQSSKSSGLSSNLQPTGAKADALREEMEEAANRMEICRDQLSADMYSFVAKEIDY------ANYFQTLIE 208 (248)
T ss_pred hhHHHHHHHHHhccccccccccccCCCCccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 977 33 3321110000 11112344444444444443211 112223333332 233 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016699 250 AERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 250 Aql~Yh~q~~~iL~qL~~eL~~ 271 (384)
||++||+++.++|+.+...+..
T Consensus 209 AQleYHr~A~eiLe~l~~~i~~ 230 (248)
T cd07619 209 VQAEYHRKSLELLQSVLPQIKA 230 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 13
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.95 E-value=4.4e-26 Score=216.55 Aligned_cols=195 Identities=20% Similarity=0.265 Sum_probs=161.9
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCCC---------cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHH
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGS---------KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~---------~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~ 119 (384)
+|+.|-..++++|.|..+|+|+++.+++++. +-++. .||++|++||.++| ++++||.||++||++++
T Consensus 16 ~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~--~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~ 91 (244)
T cd07595 16 ELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEY--GLAQSMLESSKELP--DDSLLGKVLKLCGEAQN 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHH--HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHH
Confidence 3556666789999999999999999888852 22334 89999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhc-cC
Q 016699 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVR-ET 194 (384)
Q Consensus 120 ~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~-e~ 194 (384)
+|+.++.+|+..+..+|++||++++++ ||++|. +|++ |++ +|||+ ++|..|.+ +.
T Consensus 92 ~ia~~~~~~d~~i~~~fl~pL~~~le~-dik~i~k~RKk--------Le~-----------~RLd~D~~k~r~~ka~k~~ 151 (244)
T cd07595 92 TLARELVDHEMNVEEDVLSPLQNILEV-EIPNIQKQKKR--------LSK-----------LVLDMDSARSRYNAAHKSS 151 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--------Hhh-----------hhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999 999999 8877 999 99977 33443332 11
Q ss_pred C------CCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 195 P------GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAMVEAERTYHQRVLQILD 263 (384)
Q Consensus 195 ~------~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~veAql~Yh~q~~~iL~ 263 (384)
+ ..+....+++.|+.||+++++. +...|..+ +. +++|..||+||++||+++.++|+
T Consensus 152 ~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~~E~e~------~~~l~~lv~aQl~YH~~a~e~L~ 218 (244)
T cd07595 152 GGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLAKEAEI------ASYLIDLIEAQREYHRTALSVLE 218 (244)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHccHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223467999999999999988 77778744 33 99999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCC
Q 016699 264 QLEGEMLSERQRIEAAPTAP 283 (384)
Q Consensus 264 qL~~eL~~e~qr~~s~s~~p 283 (384)
.+...|.. ++..++++|
T Consensus 219 ~l~~~l~~---~~~~~~~kp 235 (244)
T cd07595 219 AVLPELQE---QIEQSPSKP 235 (244)
T ss_pred HHHHHHHH---HHHhhccCC
Confidence 99999987 454444433
No 14
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.94 E-value=1.3e-25 Score=212.44 Aligned_cols=202 Identities=13% Similarity=0.185 Sum_probs=161.1
Q ss_pred CCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCC---------CcccchhhHHHHHHHHhhccCCC
Q 016699 31 YGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTC 101 (384)
Q Consensus 31 ~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~l~~~m~~~g~e~~~ 101 (384)
+|+++.+-.+. .+|+.|-.+++++|.|+.+|+|+++.+++|+ .+-++. .||++|.+||.++|
T Consensus 4 ~g~aekTe~~~------~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~p~~--~Lgq~M~e~~~~lg- 74 (246)
T cd07618 4 VGRAEKTEVLS------EDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKLPLT--ALAQNMQEGSAQLG- 74 (246)
T ss_pred cccccCcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccCCHH--HHHHHHHHHHhcCC-
Confidence 34455555333 2677888889999999999999999999885 223444 89999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCccc
Q 016699 102 TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQ 180 (384)
Q Consensus 102 ~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~r 180 (384)
++|.||.+|..||++.++|+.++.++...+..+|++||++++++ ||++|. +|++ |++ +
T Consensus 75 -~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~-dlk~I~K~Rkk--------Le~-----------~ 133 (246)
T cd07618 75 -EESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEV-EIPNIQKQRKQ--------LAK-----------L 133 (246)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH--------HHh-----------H
Confidence 99999999999999999999999999999999999999999999 999999 8887 999 9
Q ss_pred HHHH---HHHhhhhccCCCC---------CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016699 181 AIEV---SKRQAKVRETPGN---------PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA-AVESQQQRLTLQRLIAM 247 (384)
Q Consensus 181 rld~---kkr~~k~~e~~~~---------~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~-~ve~qqq~~~l~~L~a~ 247 (384)
|||+ |+|..+....++. +-...+++.|+.||++++..... +....|. ++|. +++|..|
T Consensus 134 RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~---dm~~~l~~e~e~------~~~l~~l 204 (246)
T cd07618 134 VLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA---DMYNFASKEGEY------AKFFVLL 204 (246)
T ss_pred HhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCHHH------HHHHHHH
Confidence 9977 3333332211100 11134689999999999977322 2232221 2344 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 248 VEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 248 veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
|+||++||+++.++|+.+...+..
T Consensus 205 v~aQ~eYHr~a~e~Le~~~p~i~~ 228 (246)
T cd07618 205 LEAQADYHRKALAVIEKVLPEIQA 228 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987
No 15
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=2.1e-21 Score=184.01 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=125.5
Q ss_pred HHHHHHHHhhccCCCCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTS-----GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD 160 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~-----~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~ 160 (384)
.||++|.++|.++| + +++||.||++||+|+.+|+.++.+++..+..+|++||++++++ |+++|. +|+|
T Consensus 82 aLs~~m~~~~~~l~--~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~-d~k~i~k~RKk--- 155 (242)
T cd07600 82 ALSRAALASSLELK--SLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNT-SFQKAHKARKK--- 155 (242)
T ss_pred HHHHHHHHHHHHhC--ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---
Confidence 79999999999999 6 9999999999999999999999999999999999999999999 999999 8877
Q ss_pred HHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----H
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV----E 233 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v----e 233 (384)
+++ +|||+ |.+.+|.+..........+++.||.+|.++.+. +...|..+ +
T Consensus 156 -----le~-----------~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e 212 (242)
T cd07600 156 -----VED-----------KRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPE 212 (242)
T ss_pred -----HHH-----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhH
Confidence 999 99966 334444322122334567899999999999988 55555533 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 234 SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 268 (384)
Q Consensus 234 ~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~e 268 (384)
. +++|..||+||+.||.+|.++|.+|...
T Consensus 213 ~------i~~L~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 213 P------LQLLKELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 9999999999999999999999998764
No 16
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.87 E-value=1.9e-20 Score=176.35 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=149.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCC---------CcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG---------SKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRA 117 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~---------~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a 117 (384)
...+||- ++.+|....+|.+++=.++++. ++-++. .||++|.+||.++| ++|.||.+| .+|.+
T Consensus 17 l~~iEkr---vD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg--~dS~lg~aL-e~~~~ 88 (257)
T cd07620 17 LVLVEQR---VEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD--AESSIRRVL-EMCCF 88 (257)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC--CcchHHHHH-HHHHH
Confidence 4455554 6777789999999998888874 345676 89999999999999 999999999 55555
Q ss_pred H-HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH--HH-Hhhhh-
Q 016699 118 R-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV--SK-RQAKV- 191 (384)
Q Consensus 118 ~-~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~--kk-r~~k~- 191 (384)
. ++|+++..+|...+..+||+||..+++. ||++|. ||++ |+. +|||+ +| |.-+.
T Consensus 89 ~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~-dL~~I~k~rKk--------L~k-----------~~LD~D~~K~R~~~a~ 148 (257)
T cd07620 89 MQNMLANILADFEMKVEKDVLQPLNKLSEE-DLPEILKNKKQ--------FAK-----------LTTDWNSAKSRSPQAA 148 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-hHHHHHHHHHH--------HHh-----------HHhhHHHHHHHHHHhh
Confidence 5 9999999999999999999999999999 999999 8887 999 99977 33 33111
Q ss_pred ccCC--C---------------C--CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 016699 192 RETP--G---------------N--PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-----ESQQQRLTLQRLIAM 247 (384)
Q Consensus 192 ~e~~--~---------------~--~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-----e~qqq~~~l~~L~a~ 247 (384)
+..+ + + .-...+++.|+.||+++++. +...|..+ +. +.+|..|
T Consensus 149 k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~------a~~l~~l 215 (257)
T cd07620 149 GRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY------ANYFIRL 215 (257)
T ss_pred ccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH------HHHHHHH
Confidence 1000 0 1 12357899999999999988 66666633 33 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 248 VEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 248 veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
+++|++||+++..+|+.+...|..
T Consensus 216 veaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 216 LELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876
No 17
>smart00721 BAR BAR domain.
Probab=99.78 E-value=3.8e-17 Score=153.40 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCc-c------cc
Q 016699 11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK-Q------VE 83 (384)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~-~------~e 83 (384)
|+.++.|..|.|..++|++ +.+..|+ .|+.|-...+.++.+.++|++.++.|++++.. . ..
T Consensus 2 ~~K~~~R~~q~~~ek~G~~-----e~T~~D~-------~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~ 69 (239)
T smart00721 2 FKKQFNRAKQKVGEKVGKA-----EKTKLDE-------DFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKK 69 (239)
T ss_pred ccchhHHHHHHHHHHhCCC-----CcCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence 4567999999999999833 4444444 25555566677777999999999999976311 1 11
Q ss_pred hhhHHHHHHHH--hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHH
Q 016699 84 IGTKLSEDSRK--YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYD 160 (384)
Q Consensus 84 ~~~~l~~~m~~--~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~ 160 (384)
..+.|++.+.. +|.+++ .++.||.+|..+|++...++..+..| ..+..+|+.|+.+++.. +++++. ++++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~~~~~~~kk--- 142 (239)
T smart00721 70 LSKSLGEVYEGGDDGEGLG--ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLG-EFKEIKKARKK--- 142 (239)
T ss_pred HHHHHHHHhcCCCCccccC--chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHH-HhHHHHHHHHH---
Confidence 23456777666 678888 88899999999999999999999999 99999999999999988 899999 5554
Q ss_pred HHHHHHHHhhhhhccCCcccHHHHHH---HhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEVSK---RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 237 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~kk---r~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq 237 (384)
++. +|+||-+ +..+.+.....+... ++..++.+|+.+++.+..++.+....|+.+.....
T Consensus 143 -----~~~-----------~~lDyD~~~~kl~~~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~ 205 (239)
T smart00721 143 -----LER-----------KLLDYDSARHKLKKAKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRV 205 (239)
T ss_pred -----HHh-----------HHHHHHHHHHHHHHHHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 555 5555511 111111111111122 77778888888888777777888989988877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 238 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 238 ~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
.+++.+|.+|+.+|++||.++..+|.++...|
T Consensus 206 ~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 206 DFFVNCLQALIEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66799999999999999999999999998766
No 18
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.75 E-value=3e-16 Score=144.72 Aligned_cols=221 Identities=19% Similarity=0.350 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchh-----
Q 016699 11 LREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIG----- 85 (384)
Q Consensus 11 ~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~----- 85 (384)
|+..+.|..|.|..++|+ ++.+..|+ .|+.+....+..+.+.++|++.++.|+.....-....
T Consensus 1 ~~K~~~R~~q~~~~k~g~-----~~~t~~D~-------~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (229)
T PF03114_consen 1 FKKKINRAKQRVKQKLGK-----SEKTEIDE-------EFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKS 68 (229)
T ss_dssp -HHHHHHHHHHHHHHHTS-----HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTH
T ss_pred CChHHHHHHHHHHHHcCC-----CCCCcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhH
Confidence 567899999999999983 34444444 2444444445555566666666666655433333322
Q ss_pred --hHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699 86 --TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (384)
Q Consensus 86 --~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r 163 (384)
+.||++|..+|.+++ ++..+|.++..+|++...|+..+.++...+...|++||+.++ . +++++....+++++.|
T Consensus 69 ~~~~l~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~-~~~~i~~~~kkr~~~~ 144 (229)
T PF03114_consen 69 PFEELADALIELGSEFS--DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-K-EFKEIKKLIKKREKKR 144 (229)
T ss_dssp HHHHHHHHHHHHHHCTS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHHHHHHHHHH
Confidence 389999999999999 888899999999999999999999999999999999999999 5 7999995555444444
Q ss_pred HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699 164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR 243 (384)
Q Consensus 164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~ 243 (384)
..++. - +.+..+.++....+..+.+++.|+.+|+.+... ....|+.+.+....+...+
T Consensus 145 ldyd~-----------~----~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~-------l~~~l~~l~~~~~~~l~~~ 202 (229)
T PF03114_consen 145 LDYDS-----------A----RSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEE-------LKEELPKLFAKRQDILEPC 202 (229)
T ss_dssp HHHHH-----------H----HHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHCHHHHHHHH
T ss_pred HHHHH-----------H----HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 44444 2 223333332221221144566666666655544 6666666654444444589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 244 LIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 244 L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
|..|+.++..||.++..+|.++...|
T Consensus 203 l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 203 LQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998876
No 19
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-15 Score=152.63 Aligned_cols=216 Identities=19% Similarity=0.281 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhH
Q 016699 8 ATKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK 87 (384)
Q Consensus 8 ~~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~ 87 (384)
|.-+++.+.|.++.|+-++| + .|.++ || +.-++.-|+......++..|+++.+....+ ....+....
T Consensus 3 ~k~~kKa~sRa~ekvlqk~g---~--~~~Tk-D~---~FE~~~~~f~~~e~e~~kLqkd~k~y~~av----~am~~a~~~ 69 (460)
T KOG3771|consen 3 AKGVQKALNRAPEKVLQKLG---K--VDETK-DE---QFEQEERNFNKQEAEGKRLQKDLKNYLDAV----RAMLAASKK 69 (460)
T ss_pred chhhHHHhccccHHHHhhcC---C--ccccc-ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34577889999999999998 3 35665 32 122223344444556666777776655543 223333347
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHH------HH
Q 016699 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YD 160 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~ 160 (384)
|+++|+..=.... .+..|..+ +.......+.+|.+.+..+++.||..|+.. +.+|. ...|| ||
T Consensus 70 l~e~l~eiy~p~~--~g~~~l~~------v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~--fpdik~~i~KR~~Kl~DyD 139 (460)
T KOG3771|consen 70 LAESLQEIYEPDW--PGRDYLQA------VADNDDLLWKDLDQKLVDQVLLPLDTYLGQ--FPDIKKAIAKRGRKLVDYD 139 (460)
T ss_pred HHHHHHHhcCccc--ccHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHhhhh--chhHHHHHHhhcchhhhhH
Confidence 8888887554444 44444433 445677889999999999999999999998 67777 44443 89
Q ss_pred HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~ 240 (384)
++|+.++. +.+.++| + +.++..||++|+..++.++.|+.+....|+.+..-+..++
T Consensus 140 ~~r~~~~k---------------vq~~k~k--d-------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~ 195 (460)
T KOG3771|consen 140 SARHSFEK---------------LQAKKKK--D-------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFF 195 (460)
T ss_pred HHHHHHHH---------------HHHhcCC--C-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99988888 2122111 2 2377889999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 016699 241 LQRLIAMVEAERTYHQRV---LQILDQLEGEML 270 (384)
Q Consensus 241 l~~L~a~veAql~Yh~q~---~~iL~qL~~eL~ 270 (384)
+.-+.+|+..++.||... +..|.++...|.
T Consensus 196 vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~ 228 (460)
T KOG3771|consen 196 VPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLF 228 (460)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 555555555443
No 20
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.68 E-value=6.2e-15 Score=131.65 Aligned_cols=190 Identities=23% Similarity=0.348 Sum_probs=156.4
Q ss_pred hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (384)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l 137 (384)
+.++.+.++|++.+..+.............|++.|.++|..++..++.++|.++..+|++.+.|+..+.++...+...|+
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~ 82 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVI 82 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777666555666666899999999999984333459999999999999999999999999999999
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699 138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 217 (384)
Q Consensus 138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~ 217 (384)
+||+.|+.+ +++.++...++|++.|.+.+. -+-.+.+.+.+.. ...++..++.++++++..
T Consensus 83 ~pL~~~~~~-~~~~~~~~~k~~~~~~~~yd~-----------~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~ 143 (194)
T cd07307 83 EPLKEYLKK-DLKEIKKRRKKLDKARLDYDA-----------AREKLKKLRKKKK-------DSSKLAEAEEELQEAKEK 143 (194)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHH
Confidence 999999987 899999888999999999999 6555543333211 234889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
+..+..+....|..+...........|..|++++..||.++..++.++.
T Consensus 144 y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 144 YEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 9888888999998887766666789999999999999999999977653
No 21
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.53 E-value=1.2e-14 Score=104.87 Aligned_cols=49 Identities=33% Similarity=0.692 Sum_probs=45.4
Q ss_pred eeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCee
Q 016699 322 VVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIE 370 (384)
Q Consensus 322 alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe 370 (384)
|+|+|.+.+++||+|.+||+|.|+...++|||.|+++|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 7899999999999999999999999999999999999999999999996
No 22
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.39 E-value=5.4e-13 Score=98.32 Aligned_cols=54 Identities=35% Similarity=0.690 Sum_probs=48.5
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEEEE-eecCCCeeEEEeCCeeeEecCCCeeec
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVVVR-KVTNNGWAEGECKGKAGWFPFGYIERR 372 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~V~-~~~d~gW~~G~~~G~~G~fP~~YVe~l 372 (384)
.++|++||.+.++++|+|.+||+|.|+ ...++|||.|+.+|+.||||.+||+.+
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 479999999999999999999999999 778889999999999999999999863
No 23
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=99.33 E-value=1.9e-10 Score=106.18 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCC-ChhHHHHHHHHHHHHHHHHH
Q 016699 46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~-~~~g~al~~~g~a~~~l~~~ 124 (384)
-+.+|.+|. ..+|+|.+.+--.+. .+....+++.+.|.-...++. -++|.+|+.+.++++++...
T Consensus 18 fnP~lrnLv---~lGk~Y~KA~~a~~~-----------A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~ 83 (226)
T cd07645 18 FNPGLRNLI---NLGKNYEKAVNAMVL-----------AGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDS 83 (226)
T ss_pred cCHHHHHHH---HHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 356777775 455567765533322 233456777777765443333 57999999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhH
Q 016699 125 RGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKL 204 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl 204 (384)
.++.++.++..+|.||...++. |++.+.+..|+|+..++.--. +|++++. |+||.++| ++++.+..++
T Consensus 84 le~~lK~Fh~Ell~~LE~k~el-D~kyi~a~~Kkyq~E~k~k~d------sLeK~~s-eLKK~RRK----sqg~kn~~ky 151 (226)
T cd07645 84 LEENFKKFHREIIAELERKTDL-DVKYMTATLKRYQTEHKNKLD------SLEKSQA-DLKKIRRK----SQGRRNASKY 151 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHhc----ccCCCCchhh
Confidence 9999999999999999999999 999999777889665553333 3444444 88776666 3344444466
Q ss_pred HHHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 205 DAAEVKLHDLKSN-------------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML 270 (384)
Q Consensus 205 ~~ae~k~~e~~~~-------------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~ 270 (384)
..-|.++.+..+. -++|..|..+.++.||.| |+|....+.||.+...+|.+--..+.
T Consensus 152 e~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRRycFlvdkh---------C~~~~~~~~yh~k~~~lL~~klp~Wq 221 (226)
T cd07645 152 EHKENEYLETVTSRQSDIQKFIADGCREALLEEKRRFCFLVDKH---------CSFSNHIHYFHQQAAELLNSKLPVWQ 221 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 6666555544322 446667777777777776 99999999999999999866444343
No 24
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.26 E-value=6.7e-10 Score=103.06 Aligned_cols=157 Identities=15% Similarity=0.210 Sum_probs=115.1
Q ss_pred hHHHHHHHHhhccCCCCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHH
Q 016699 86 TKLSEDSRKYGSDNTCTSGNTL----SKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (384)
Q Consensus 86 ~~l~~~m~~~g~e~~~~~~~~~----g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~ 161 (384)
..+++.+.++|. + +.|... |.+|.+|+.+.+.|+..++.|...+...++.||.+|+.. |+++++..+|+||+
T Consensus 39 ~~Fa~~L~~f~~--~-~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK 114 (202)
T cd07606 39 SAFAESLEEFGG--G-HDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADT-DLQEVKDARRRFDK 114 (202)
T ss_pred HHHHHHHHHhcC--C-CCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 378888888884 2 233333 358999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699 162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL 241 (384)
Q Consensus 162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l 241 (384)
...++++ -+--+....++.+.. +++.|+..+..++..+.....+-...+..++....=-.|
T Consensus 115 ~s~~yd~-----------al~K~~~l~k~~k~~--------~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~l 175 (202)
T cd07606 115 ASLDYEQ-----------ARSKFLSLTKDAKPE--------ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFL 175 (202)
T ss_pred HHHHHHH-----------HHHHHHhccccCchH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 332222222221221 455666666666665544434444444444433222238
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 242 QRLIAMVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 242 ~~L~a~veAql~Yh~q~~~iL~qL 265 (384)
+.|..|+.|+.+|+++.++++.++
T Consensus 176 e~ll~~m~A~~tFF~qG~ell~~l 199 (202)
T cd07606 176 ERLSGSMDAHLAFFKSGYELLRQL 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999998776
No 25
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.26 E-value=8.4e-10 Score=102.01 Aligned_cols=181 Identities=13% Similarity=0.202 Sum_probs=137.2
Q ss_pred hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 016699 62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR 141 (384)
Q Consensus 62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~ 141 (384)
...++|+|.+=+++..|.....+...+++.+.++|.++. .|...|.+|.+|+.+.+.|...+..++.++...+++||.
T Consensus 16 ~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~ 93 (200)
T cd07639 16 TRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQ 93 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666777766666666689999999999766 777899999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh-hhhccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699 142 AMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ-AKVRETPGNPDLALKLDAAEVKLHDLKSNMAI 220 (384)
Q Consensus 142 ~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~-~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~ 220 (384)
+|+.+ |++.++..+|+||+....+++ -. + |.-+ .|.+ +.+++.|...++-++..+..
T Consensus 94 ~F~k~-dl~~vKe~kK~FdK~s~~~d~-----------al-~-K~~~~~k~k--------~~e~~Ea~~~l~~~R~~F~~ 151 (200)
T cd07639 94 LLVKE-DLRGFRDARKEFERGAESLEA-----------AL-Q-HNAETPRRK--------AQEVEEAAAALLGARATFRD 151 (200)
T ss_pred HHHHh-hhHHHHHHhhhHhhcchhHHH-----------HH-H-HHhhccccc--------hHHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999998 21 1 1111 1111 12566666677766666544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
...+-...+..++....=-.|+.|.+|+.|+.+|+++.++++.++.
T Consensus 152 ~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~ 197 (200)
T cd07639 152 RALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALH 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4333444444444432222388999999999999999999998874
No 26
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.25 E-value=6e-12 Score=131.45 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=53.3
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIER 371 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~ 371 (384)
..+.|.|+|||.+++.+||+|.+||+|.++...++|||.|..+|+.||||.+||..
T Consensus 1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CCcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 34789999999999999999999999999999999999999999999999999975
No 27
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=99.25 E-value=4.7e-10 Score=104.39 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCC-ChhHHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSG-NTLSKAALSYGRARAQMEKER 125 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~-~~~g~al~~~g~a~~~l~~~~ 125 (384)
+..+++|.. .+++|++.+.-.+. .+....+++.+.|.-...+++ -++|.+|+++.++++.|....
T Consensus 21 nP~lrnlv~---~G~~Y~kal~a~~~-----------a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~l 86 (232)
T cd07646 21 NPSLRNFIA---MGKNYEKALASVTF-----------AAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQL 86 (232)
T ss_pred ChhHHHHHH---HhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 666777753 34446655533222 233456777787775544333 469999999999999999999
Q ss_pred HHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHH
Q 016699 126 GNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLD 205 (384)
Q Consensus 126 ~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~ 205 (384)
+.+++.++..+|.||...++. |++.+.+-.|+|+.-++.--. +|.+|+. |+||.++| ++++.+..++.
T Consensus 87 e~~lk~Fh~eli~pLE~k~E~-D~k~i~a~~Kky~~e~k~k~~------sleK~qs-eLKKlRrK----sqg~k~~~ky~ 154 (232)
T cd07646 87 EEMLKSFHNELLTQLEQKVEL-DSRYLTAALKKYQTEHRSKGE------SLEKCQA-ELKKLRKK----SQGSKNPQKYS 154 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHh----hccCCCchhhH
Confidence 999999999999999999999 999999888889655554433 4555555 77776655 22334455666
Q ss_pred HHHHHHHHHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 206 AAEVKLHDLKSN-------------MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 206 ~ae~k~~e~~~~-------------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
.-|.++.+..+. -+.|..|..+.++.||.| |++....+.||.....+|.+--..+..
T Consensus 155 ~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRycflvdk~---------C~~~~~~~~yh~k~~~lL~~kl~~Wqe 224 (232)
T cd07646 155 DKELQYIEAISNKQGELENYVSDGYKTALTEERRRYCFLVEKQ---------CAVAKNSIAYHSKGKELLTQKLPSWQQ 224 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 666665553322 346667777777777665 999999999999999998765555543
No 28
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=99.25 E-value=3.1e-12 Score=128.78 Aligned_cols=56 Identities=32% Similarity=0.717 Sum_probs=53.1
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
-.++|-|.|.+.+.+||+|.+||+|+|....+.|||+|..+|+.||||+|||..+.
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999998763
No 29
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.24 E-value=1.5e-09 Score=100.65 Aligned_cols=187 Identities=12% Similarity=0.198 Sum_probs=140.2
Q ss_pred hhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699 57 TRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (384)
Q Consensus 57 ~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~ 136 (384)
.+.+.+..++|+|.+-+++..|...+.+...+++.+...|.++. .|...|.+|.++|.+.+.|...+..++..+...+
T Consensus 11 ~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~--~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i 88 (200)
T cd07603 11 VSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFR--DDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTV 88 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888888777666666689999999999875 7778999999999999999999999999999999
Q ss_pred chHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHH
Q 016699 137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS 216 (384)
Q Consensus 137 l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~ 216 (384)
++||++|+.+ ||+.+++.+|+||+.-..+++-+..-.+|| |.+ ..+++.+...+..++.
T Consensus 89 ~~pL~~F~k~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~------------K~K--------~~~~~Ea~~~L~~~Rk 147 (200)
T cd07603 89 STQLQNFVKE-DIKKVKESKKHFEKISDDLDNALVKNAQAP------------RSK--------PQEAEEATNILTATRS 147 (200)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhccC------------CCC--------HHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999221111111 111 1256666666666666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 217 NMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 217 ~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.+.....+-...+..+.....--.|+-|..|+.|+.+|+++..+++.++.
T Consensus 148 ~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~ 197 (200)
T cd07603 148 CFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 54433333333333333322222388999999999999999999988764
No 30
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=99.23 E-value=3.2e-12 Score=126.02 Aligned_cols=59 Identities=22% Similarity=0.362 Sum_probs=55.0
Q ss_pred CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
....++||||||++..++||+|++||||+|++..+.+||.|++.+..|+||+|||....
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 34567999999999999999999999999999999999999999999999999998754
No 31
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.21 E-value=2e-11 Score=87.37 Aligned_cols=46 Identities=30% Similarity=0.620 Sum_probs=42.5
Q ss_pred EeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecC
Q 016699 321 EVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPF 366 (384)
Q Consensus 321 ~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~ 366 (384)
+|+|||++..++||+|.+||+|.|++..++|||.|+. +|+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 5899999999999999999999999999999999999 479999995
No 32
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.20 E-value=1e-09 Score=107.47 Aligned_cols=55 Identities=24% Similarity=0.500 Sum_probs=49.6
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeC-CeeeEecCCCeeec
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECK-GKAGWFPFGYIERR 372 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~-G~~G~fP~~YVe~l 372 (384)
..++|||||.++..+||+|++||.|.+++.. .-||+.|+.. |+.|+||+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 5689999999999999999999999977764 5599999995 99999999999864
No 33
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=99.20 E-value=1.6e-09 Score=100.32 Aligned_cols=185 Identities=13% Similarity=0.193 Sum_probs=134.1
Q ss_pred hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016699 60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN------TLSKAALSYGRARAQMEKERGNLLKALG 133 (384)
Q Consensus 60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~------~~g~al~~~g~a~~~l~~~~~~~~~~~~ 133 (384)
|-.|.++|+|.+=+++..+..-.-.-..+++.+.+.|-++- +++ ..+.+|.+|+.....|.+.+..|+.++.
T Consensus 14 t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~i--gd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~ 91 (207)
T cd07634 14 TNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECI--GDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNAN 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488888888888877754444444477888888876654 333 4999999999999999999999999999
Q ss_pred hhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHH
Q 016699 134 TQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 213 (384)
Q Consensus 134 ~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e 213 (384)
..++.||.+|+.+ |++.++..+|+||+....+++ .+--.....+++++. +++.|.+.++-
T Consensus 92 ~~l~~pL~~f~k~-dl~~vKe~kK~FDK~se~y~~-----------aleK~l~l~~~kk~~--------~~~ea~~~l~~ 151 (207)
T cd07634 92 DVLIAPLEKFRKE-QIGAAKDGKKKFDKESEKYYS-----------ILEKHLNLSAKKKES--------HLQRADTQIDR 151 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHccchhHHHhHHHH-----------HHHHHHhccccCCcc--------HHHHHHHHHHH
Confidence 9999999999999 999999999999999999988 331111122222222 56666666666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 214 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 214 ~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.+..+.....+-...+..|+...-==.|+.|.+|+.|+.+|+++.++++.++.
T Consensus 152 ~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~ 204 (207)
T cd07634 152 EHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 66554443333333333333322222288999999999999999999988763
No 34
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=99.19 E-value=2.8e-09 Score=99.86 Aligned_cols=194 Identities=18% Similarity=0.265 Sum_probs=134.8
Q ss_pred chHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHH
Q 016699 40 DEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR 118 (384)
Q Consensus 40 ~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~ 118 (384)
.|..+. ....|+||....++ ++..|...+++...+++.+.+.|...-...+...|.+|.+|+.+.
T Consensus 7 lee~l~~~~~~l~Kl~K~~k~--------------~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l 72 (215)
T cd07604 7 LEESLEGDRVGLQKLKKAVKA--------------IHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFT 72 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH
Confidence 344444 44566666655554 445555555555678888888887654112225999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccC---
Q 016699 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRET--- 194 (384)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~--- 194 (384)
+.|+..+..|..++...++.||.+|+.+ ||+++. ..+|+||+.+..++. -+ -+.-+.|+++.
T Consensus 73 ~El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~-----------~~--~k~~k~Kk~~~~~~ 138 (215)
T cd07604 73 KELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYET-----------KA--SKIEKEKKQLAKEA 138 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH-----------HH--HHHHhccchhhhhh
Confidence 9999999999999999999999999999 999998 999999999999887 32 11111111111
Q ss_pred ------CCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 195 ------PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 268 (384)
Q Consensus 195 ------~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~e 268 (384)
....+.+..+..+...|+...=.+ .-.+..+...+-.=.|+.|..|+.|+.+|+++....++++.--
T Consensus 139 ~~~r~e~~~~e~~~~l~~~R~~F~~~~~~y-------v~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~ 211 (215)
T cd07604 139 GMIRTEITGAEIAEEMEKERRMFQLQMCEY-------LIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPY 211 (215)
T ss_pred hhcchhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111344566777777776665332 1122233333333348899999999999999999999887653
No 35
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.18 E-value=4.5e-11 Score=86.70 Aligned_cols=55 Identities=31% Similarity=0.561 Sum_probs=51.0
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeC-CeeeEecCCCeeec
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYIERR 372 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~-G~~G~fP~~YVe~l 372 (384)
..++|+|+|.+..+++|+|.+||+|.|+...++|||.+++. |+.||||.+||+.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 46899999999999999999999999999988999999986 99999999999753
No 36
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.16 E-value=4.9e-11 Score=112.79 Aligned_cols=56 Identities=34% Similarity=0.663 Sum_probs=52.8
Q ss_pred eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV 375 (384)
Q Consensus 320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~ 375 (384)
|.|-|.|.++.++||+|.+|+.|+|+++..+|||+|..+|+.||||+|||....+.
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccc
Confidence 78899999999999999999999999999999999999999999999999876544
No 37
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.5e-09 Score=112.69 Aligned_cols=60 Identities=33% Similarity=0.697 Sum_probs=54.4
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRDRV 375 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~~~ 375 (384)
...+|+|||.|++.+++|++|.+||||.|-.. ..+||+.|+..|+.||||.|||+.+...
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~ 753 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAV 753 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccC
Confidence 45789999999999999999999999998875 5889999999999999999999987533
No 38
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.15 E-value=5.1e-09 Score=97.80 Aligned_cols=175 Identities=22% Similarity=0.273 Sum_probs=134.9
Q ss_pred hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (384)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~ 136 (384)
..+|.+++++.+..+.+...-..++.+ +++|.. |+.+. .|. -.+..+...+...+.+|...+...+
T Consensus 26 ~~~~kL~k~~K~Y~~av~~m~~~q~~~----~e~l~~lY~p~~-------~~~--~~~~~v~e~~d~~~~~l~~~l~~~V 92 (211)
T cd07588 26 ASANRLQKDLKNYLNSVRAMKQASKTL----SETLKELYEPDW-------PGR--EHLASIFEQLDLLWNDLEEKLSDQV 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCcc-------ccH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888866555555554 555432 22221 122 3335678888999999999999999
Q ss_pred chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699 137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV 209 (384)
Q Consensus 137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~ 209 (384)
+.||..|+.. +++|+ ..+|| ||+.|+.++. .+.|.+ ..+.+|..||.
T Consensus 93 l~Pl~~~~s~--f~~i~k~I~KR~~KllDYDr~r~~~~k------------------L~~K~~------kde~KL~kae~ 146 (211)
T cd07588 93 LGPLTAYQSQ--FPEVKKRIAKRGRKLVDYDSARHNLEA------------------LKAKKK------VDDQKLTKAEE 146 (211)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhhHHHhHHHHHHHHHH------------------HHhccc------ccHhhHHHHHH
Confidence 9999999998 89988 44443 7777777777 112211 13459999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
+++.+++.++.|+.+....|+.+-+-+..++...+.+|+.+|..||..+..+..+|...|..
T Consensus 147 el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~ 208 (211)
T cd07588 147 ELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999888888889999999999999999999999999887754
No 39
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=99.14 E-value=6.7e-09 Score=96.49 Aligned_cols=185 Identities=13% Similarity=0.228 Sum_probs=129.2
Q ss_pred hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC-CC-CCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699 62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CT-SGN--TLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (384)
Q Consensus 62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~-~~-~~~--~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l 137 (384)
...++|+|.+=+++..+..-.-.-..+++.+..++-+.- .+ .|. .+|.+|.+||.+...|+..+..|+..+...++
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~ 95 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLI 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777766766654444444478888888886642 10 222 48999999999999999999999999999999
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699 138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 217 (384)
Q Consensus 138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~ 217 (384)
.||.+|+.. |+..++..+|+||+....+++ -+--+....+++++. +++.|+..+.-++..
T Consensus 96 ~pL~~F~k~-dl~~~ke~kk~FdK~se~~~~-----------al~k~~~lsk~kk~~--------~~~ea~~~l~~~r~~ 155 (207)
T cd07602 96 EPLEKFRKE-QIGGAKEEKKKFDKETEKFCS-----------SLEKHLNLSTKKKEN--------QLQEADAQLDMERRN 155 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHhccCCCCCch--------HHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999 221111111121122 455555555555554
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
+.....+-...+..|+....=-.|.-|.+|+.|+.+|+++.++++.++.
T Consensus 156 f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~ 204 (207)
T cd07602 156 FHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFK 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4333333333443443322222388999999999999999999988763
No 40
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=99.14 E-value=3e-09 Score=97.41 Aligned_cols=165 Identities=8% Similarity=0.059 Sum_probs=111.6
Q ss_pred hhhHHHHHHHHhhccCCCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHH
Q 016699 84 IGTKLSEDSRKYGSDNTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162 (384)
Q Consensus 84 ~~~~l~~~m~~~g~e~~~~~~~-~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~ 162 (384)
.++...+.+.+.|+-.-.++++ .+|.+||++.+++++|....++.++.++..+|.||...++. |.+.+..-.|+|+..
T Consensus 42 aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEkk~el-D~kyi~~s~KkYq~E 120 (215)
T cd07644 42 AAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKL-DMQFIEDSRRVYELE 120 (215)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 4455678888888877666776 59999999999999999999999999999999999999999 999999888889666
Q ss_pred HHHHHHhhhhhccCCcccHHHHHHHhhhhc-cCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699 163 RQEAEAQLVISSSLKPSQAIEVSKRQAKVR-ETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL 241 (384)
Q Consensus 163 r~ele~~~~~~~~l~~~rrld~kkr~~k~~-e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l 241 (384)
++.--. +|++|++ |+++.++|.. ..-...|..+-++.....|-..- -.+.|..|.. +-++.+
T Consensus 121 ~r~k~d------sleK~~s-elkk~rrk~qkn~~e~kE~~~~lq~~~~~f~~~~-~k~Al~eErR---------Ry~Flv 183 (215)
T cd07644 121 YRHRAA------NLEKCMS-ELWRMERQRDRNVREMKENVNRLRQSMQAFLKES-QRAAELEEKR---------RYRFLA 183 (215)
T ss_pred HHHhhh------hHHHHHH-HHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHH
Confidence 555444 5666766 6655443321 11001111112211111111100 0123333444 444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 242 QRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 242 ~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
...+++....+.||.+...++.+--
T Consensus 184 ek~c~~~k~~~~yh~ka~~ll~~kl 208 (215)
T cd07644 184 EKHYLLNNTFLQFQSRARGMLQTRV 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5569999999999999999876543
No 41
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.13 E-value=1.1e-10 Score=83.75 Aligned_cols=51 Identities=35% Similarity=0.644 Sum_probs=47.9
Q ss_pred eEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC-eeeEecCCCee
Q 016699 320 GEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIE 370 (384)
Q Consensus 320 a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G-~~G~fP~~YVe 370 (384)
++|+|+|.+..+++|+|.+||+|.|+...++|||.+++.+ +.||||.+||+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999999889999999955 99999999986
No 42
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.7e-11 Score=127.14 Aligned_cols=56 Identities=30% Similarity=0.552 Sum_probs=52.3
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
..+.++|||.+++++||+|.+||+|.|+.+.+.+||.|+++|..|+||+|||....
T Consensus 1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence 45688999999999999999999999999999999999999999999999996653
No 43
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.12 E-value=1.1e-08 Score=94.74 Aligned_cols=179 Identities=12% Similarity=0.231 Sum_probs=122.9
Q ss_pred HHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHh
Q 016699 65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (384)
Q Consensus 65 ~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~ 144 (384)
.+++|.+=+++..+..-.-....++..+..++...+ .|...|.+|.+|+.+...|+..+..|...+...++.||.+|+
T Consensus 19 ~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~--~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~ 96 (200)
T cd07638 19 DKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSS--KDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFV 96 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444333333334478887777776555 777889999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHH
Q 016699 145 LGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE 224 (384)
Q Consensus 145 ~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e 224 (384)
.. |+..++..+|+||+...+.+. +|.+.-++ .|.++ .+++.|...+.-++..+.....+
T Consensus 97 k~-dl~~vke~kk~FdK~s~~~~~------aL~K~~~~------~k~k~--------~e~eEa~~~l~~~r~~F~~~~ld 155 (200)
T cd07638 97 KE-DLRKFKDAKKQFDKVSEEKEN------ALVKNAQV------QRNKQ--------HEVEEATNILTATRKCFRHIALD 155 (200)
T ss_pred HH-HhHHHHHHHHHHHHHhHHHHH------HHHHhccC------CcCch--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999988888 11111111 11111 14455555555555444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 225 AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 225 ~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
-...+..++....=-.|.-|.+|+.|+..|+++.++++.++.
T Consensus 156 Yv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~ 197 (200)
T cd07638 156 YVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELG 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344444443332222388999999999999999999998764
No 44
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.12 E-value=8.5e-09 Score=97.18 Aligned_cols=186 Identities=15% Similarity=0.221 Sum_probs=140.6
Q ss_pred HHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016699 55 ISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGT 134 (384)
Q Consensus 55 ~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~ 134 (384)
.-..+++..+++..+..+.+......+..+ ++++.... + +.++..+..+.-.+-.+.+.|.+...+++..+..
T Consensus 22 ~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~i----s~~l~~~~-~--~~~~~~~~~~~e~y~~~~~~l~~~~~~~~~~~~~ 94 (225)
T cd07590 22 QLESTTKKLYKDMKKYIEAVLALSKAEQRL----SQDLASGP-L--CEDNDELRNLVEALDSVTTQLDKTVQELVNLIQK 94 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHhcc-c--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888888876555555544 44444422 1 1234456667777888888888888999999999
Q ss_pred hhchHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHH
Q 016699 135 QVAEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAA 207 (384)
Q Consensus 135 ~~l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~a 207 (384)
.|++||..|+.. +++|+ ..+|| ||+.|..++. .+.| +....+..||..|
T Consensus 95 ~vl~Pl~~~~s~--f~~I~~~I~KR~~Kl~DYD~~r~~~~k------------------l~~K----~~k~~~~~KL~ka 150 (225)
T cd07590 95 TFIEPLKRLRSV--FPSVNAAIKRREQSLQEYERLQAKVEK------------------LAEK----EKTGPNLAKLEQA 150 (225)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHH------------------HHhC----ccCChhHHHHHHH
Confidence 999999999998 79988 44443 5555555555 2222 1111224699999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 208 EVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 208 e~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
|..|+.+++.+..++.+....|+.+.+-+..++...+.+|+..|+.||..+...+.+|+..+..
T Consensus 151 e~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~ 214 (225)
T cd07590 151 EKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDN 214 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988777777888899999999999999999999999998764
No 45
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=99.10 E-value=4.4e-09 Score=102.09 Aligned_cols=154 Identities=19% Similarity=0.301 Sum_probs=110.5
Q ss_pred HHHHHHHHhh---ccC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYG---SDN--TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDR 161 (384)
Q Consensus 87 ~l~~~m~~~g---~e~--~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~ 161 (384)
.|+....... .++ .....++++.+|.+|+.+..+|+..|-+++..+...|..||+..+.. +++.+...+|
T Consensus 125 ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~~a~k~Rk---- 199 (289)
T PF10455_consen 125 ALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFKKANKARK---- 199 (289)
T ss_pred HHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----
Confidence 4666666666 444 11255789999999999999999999999999999999999999998 7888873333
Q ss_pred HHHHHHHhhhhhccCCcccHHHH--HHHhhhhccCC-CCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Q 016699 162 MRQEAEAQLVISSSLKPSQAIEV--SKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV-ESQQQ 237 (384)
Q Consensus 162 ~r~ele~~~~~~~~l~~~rrld~--kkr~~k~~e~~-~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~v-e~qqq 237 (384)
..++ .||++ .|-.-|..+.+ ..+....++..+|.+|...-+. |..-|..| +...
T Consensus 200 ---kV~~-----------sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e- 257 (289)
T PF10455_consen 200 ---KVEN-----------SRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSE- 257 (289)
T ss_pred ---HHHH-----------HHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcc-
Confidence 3666 66533 22222211111 1222345677888888777766 77777755 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 238 RLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 238 ~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
.+.-|..|+.||+.||..|.+.|..+...|
T Consensus 258 --~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 258 --PLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 188999999999999999999999987765
No 46
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=99.10 E-value=1.5e-08 Score=95.13 Aligned_cols=196 Identities=16% Similarity=0.250 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCC-CCChhHHHHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARAQMEKERG 126 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~-~~~~~g~al~~~g~a~~~l~~~~~ 126 (384)
..+|+|..... .|++.+--.+.. +..+.+++.+-|.--..+ ...++|.+|+++.++++.|+..++
T Consensus 10 P~~e~lv~~~~---kY~~al~~~~~a-----------~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 10 PAWENLVSLGK---KYQKALRAMSQA-----------AAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 77888875554 466555333222 123444554444321111 234699999999999999999999
Q ss_pred HHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH----HHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHH
Q 016699 127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLAL 202 (384)
Q Consensus 127 ~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y----~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~ 202 (384)
.+...+...||.||...++. |.|.+....|+| .+.+.+++. ..-|++|.++|.+.. ......
T Consensus 76 ~~~~~~~~~li~pLe~~~e~-d~k~i~~~~K~y~ke~k~~~~~l~K-----------~~se~~Kl~KK~~kg--k~~~~~ 141 (219)
T PF08397_consen 76 EVFKAFHSELIQPLEKKLEE-DKKYITQLEKDYEKEYKRKRDELKK-----------AESELKKLRKKSRKG--KDDQKY 141 (219)
T ss_dssp HHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHCCCCCC--TSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhcccCC--CccccH
Confidence 99999999999999999999 899888777777 444455554 444666655553321 122233
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 203 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 203 kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
.++.+...+.+-...+..+..+..+....-|..+..+.+.+++.|+...+.||.++..+|++.-..+..
T Consensus 142 ~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~ 210 (219)
T PF08397_consen 142 ELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQE 210 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455555555555544444444444433233555667778889999999999999999999888888876
No 47
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.09 E-value=1.9e-08 Score=93.35 Aligned_cols=159 Identities=15% Similarity=0.252 Sum_probs=120.2
Q ss_pred hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (384)
Q Consensus 85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ 164 (384)
...++..+..+..++. .|.....+|.+||++.+.|...+..++..+...+++||++|+.+ ||+.+++.+|+||+...
T Consensus 39 ~~~F~~~l~d~~~~~~--gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se 115 (200)
T cd07637 39 NKLFVSGIRDLSQQCK--KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVRE 115 (200)
T ss_pred HHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 4467888888888866 88889999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL 244 (384)
Q Consensus 165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L 244 (384)
.+++-+. +.-+.+.++. .+++.+...+..++..+.....+-...+..++....=-.|+-|
T Consensus 116 ~yd~al~-------------k~~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~l 175 (200)
T cd07637 116 DLEIALV-------------KNAQAPRHKP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSM 175 (200)
T ss_pred HHHHHHH-------------HHhhcCCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988111 1111221111 2566666666666666444433333333344333222238899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016699 245 IAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 245 ~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.+|+.|+.+|+++.++++.++.
T Consensus 176 l~~~~a~~tff~qG~el~~~~~ 197 (200)
T cd07637 176 LSFMHAQYTFFQQGYSLLHELD 197 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHhhc
Confidence 9999999999999999998764
No 48
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=99.06 E-value=2.3e-10 Score=114.21 Aligned_cols=57 Identities=28% Similarity=0.560 Sum_probs=54.7
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 374 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~ 374 (384)
..++|+|+|.++...||+|.+||+|.|+.+.|.+|++|+++|+.|+||+||||.+.+
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 348999999999999999999999999999999999999999999999999999876
No 49
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=99.05 E-value=1.4e-08 Score=94.32 Aligned_cols=185 Identities=11% Similarity=0.219 Sum_probs=137.7
Q ss_pred hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCC------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGN------TLSKAALSYGRARAQMEKERGNLLKA 131 (384)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~------~~g~al~~~g~a~~~l~~~~~~~~~~ 131 (384)
+.+..+.++|+|.+=+++..+..-.-.-..+++.+..++-++- +++ ....+|.+|+.+...|+..++.|+..
T Consensus 12 e~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~--gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~q 89 (207)
T cd07636 12 DKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCI--GDAETDDEICIARSLQEFAAVLRNLEDERTRMIEN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445688888888888877654444444478888888886543 222 26699999999999999999999999
Q ss_pred HhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh--hhhccCCCCCchHHhHHHHHH
Q 016699 132 LGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ--AKVRETPGNPDLALKLDAAEV 209 (384)
Q Consensus 132 ~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~--~k~~e~~~~~~~~~kl~~ae~ 209 (384)
+...++.||.+|+.. |++.++..+|+||+....+++ -+ .|..+ +|.|+. +++.|..
T Consensus 90 a~~~l~~~L~~F~ke-di~~~Ke~kK~FdK~se~~~~-----------al--~k~~~ls~k~K~~--------~~eEA~~ 147 (207)
T cd07636 90 ASEVLITPLEKFRKE-QIGAAKEAKKKYDKETEKYCA-----------VL--EKHLNLSSKKKES--------QLHEADS 147 (207)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhHhhhhhHHHH-----------HH--HHHhcCcccCCch--------HHHHHHH
Confidence 999999999999999 999999999999999999999 22 12222 122222 6888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.+..++..+.....+-.-.+..|+....==.|..|.+|+.|+..|+++.++++.++.
T Consensus 148 ~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 148 QVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 888777776555444444444443322222288999999999999999999988763
No 50
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.05 E-value=4.1e-08 Score=91.83 Aligned_cols=188 Identities=13% Similarity=0.183 Sum_probs=128.5
Q ss_pred hhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhcc-CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 016699 61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE 138 (384)
Q Consensus 61 k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e-~~-~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~ 138 (384)
..+.++|+|.+=+++..+..-.-+-..++..+..++.. |+ ++.|...+.+|.+|+.+.+.|+..+..|...+...++.
T Consensus 15 ~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~ 94 (215)
T cd07601 15 SSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLH 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666666666544444444788888888654 22 24555677899999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHH
Q 016699 139 PLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 218 (384)
Q Consensus 139 PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~ 218 (384)
||.+|+.+ |+++++..+|+||+.....++-++=..+||+ +.+.+....+++.++..+...|..+.=.
T Consensus 95 pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k-----------~k~~~~~~~Ea~~~l~~~R~~F~~~~ld- 161 (215)
T cd07601 95 PISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSK-----------KRENTKVKIEVNDEVYACRKKQHQTAMN- 161 (215)
T ss_pred HHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCc-----------CCCchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999 9999999999999999999992221122221 1111100013444555555555555432
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 016699 219 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG 267 (384)
Q Consensus 219 ~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~-qL~~ 267 (384)
-...+..++....==.|+.|.+|+.|+.+|+++.++++. ++..
T Consensus 162 ------Yv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p 205 (215)
T cd07601 162 ------YYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE 205 (215)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222232222112288999999999999999999987 5544
No 51
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.04 E-value=1.9e-08 Score=93.66 Aligned_cols=177 Identities=15% Similarity=0.191 Sum_probs=134.8
Q ss_pred hhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699 57 TRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (384)
Q Consensus 57 ~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~ 136 (384)
...++..+++..+..+.+..--..|+.+.+-|.+ -|+.+.| ..+.+ ..+.......+.+|...+...+
T Consensus 25 e~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~--~~~~~-------~~v~e~~d~~~~~~~~~~~~~v 92 (211)
T cd07612 25 QSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD--GHEDL-------GAIVEGEDLLWNDYEAKLHDQA 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC--cccHH-------HHHHhccHHHHHHHHHHHHHHH
Confidence 3566778888888888765555556655333433 3555554 33222 2344666679999999999999
Q ss_pred chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699 137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV 209 (384)
Q Consensus 137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~ 209 (384)
|+||..|+.. +.+|+ ..+|| ||+.|+.++. .+.|.+ ..+.||..||+
T Consensus 93 L~pi~~~~s~--f~~i~~~i~KR~~KllDYD~~R~~~~k------------------l~~k~~------kD~~KL~kAe~ 146 (211)
T cd07612 93 LRTMESYMAQ--FPDVKERVAKRGRKLVDYDSARHHLEA------------------LQNAKK------KDDAKIAKAEE 146 (211)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHH------------------HHhccc------ccHHHHHHHHH
Confidence 9999999998 78888 44443 7777777776 111111 12459999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
+++.+++.++.|+.+....|+.+.+-+..++...+.+|+.+|..||..+..+..+|...|..
T Consensus 147 el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~ 208 (211)
T cd07612 147 EFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887888889999999999999999999999999887753
No 52
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=99.03 E-value=4.2e-08 Score=91.11 Aligned_cols=185 Identities=11% Similarity=0.211 Sum_probs=124.3
Q ss_pred hhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC---CCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699 62 HFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTS-GNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (384)
Q Consensus 62 ~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~---~~~-~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l 137 (384)
.+.++|+|.+=++++.+..-.-.-..+++.+...+-++- .+. ....|.+|.+|+.++..|...++.|..++...++
T Consensus 16 k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~ 95 (207)
T cd07635 16 RFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLI 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777776654333333466777777775442 111 1234799999999999999999999999999999
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699 138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 217 (384)
Q Consensus 138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~ 217 (384)
.||.+|+.. |++.++..+|+||+...++++ -..-+.+.+++.++. +++.|...+.-++..
T Consensus 96 ~pL~~F~ke-dl~~~Ke~KK~FdK~se~~~~-----------Al~K~~~ls~kkk~~--------e~~EA~~~l~~~r~~ 155 (207)
T cd07635 96 KPLERFRKE-QLGAVKEEKKKFDKETEKNYS-----------LLEKHLNLSAKKKEP--------QLQEADVQVEQNRQH 155 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhHHHH-----------HHHHHHhccCCCCcc--------HHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999 221111232232222 344444444444443
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 218 MAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 218 ~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
+.....+-.-.+..|+....=-.|.-|.+|+.|+..|+++.++++.++.
T Consensus 156 F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 156 FYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3222222222222332221112288999999999999999999988763
No 53
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=98.99 E-value=7.2e-08 Score=90.79 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=120.1
Q ss_pred HHHHHHHHhhccCCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH----HH
Q 016699 87 KLSEDSRKYGSDNTCT-SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY----DR 161 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~-~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y----~~ 161 (384)
.+.+++.+-|.-...+ +.-++|.+|+++.+.++.++...+.+...+...+|.||..-++. |.|.+....|+| .+
T Consensus 45 ~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~-d~k~i~~~~K~y~~E~K~ 123 (223)
T cd07605 45 VFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLEL-DQKVINKFEKDYKKEYKQ 123 (223)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 5666666666543321 33479999999999999999999999999999999999999999 999999888887 44
Q ss_pred HHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016699 162 MRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL 241 (384)
Q Consensus 162 ~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l 241 (384)
.|.+++. ..-|++|.++|.+.. +.+....++..+.+.+.+-...+..+.....+....-|+.+..+.|
T Consensus 124 ~~~~l~K-----------~~sel~Kl~KKs~~~-~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv 191 (223)
T cd07605 124 KREDLDK-----------ARSELKKLQKKSQKS-GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLV 191 (223)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHccc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456665 555776666554432 2233344666666655555444444433333332223555666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 242 QRLIAMVEAERTYHQRVLQILDQLEGEML 270 (384)
Q Consensus 242 ~~L~a~veAql~Yh~q~~~iL~qL~~eL~ 270 (384)
.+++.|++.+.+||......|++.-..+.
T Consensus 192 ~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 192 DKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 88999999999999999988876555443
No 54
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.99 E-value=7.2e-08 Score=89.50 Aligned_cols=172 Identities=16% Similarity=0.265 Sum_probs=119.9
Q ss_pred ccCCCcccchhhHHHHHHHHhhcc--CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHH
Q 016699 75 IVTGSKQVEIGTKLSEDSRKYGSD--NTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA 152 (384)
Q Consensus 75 ~~~~~~~~e~~~~l~~~m~~~g~e--~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~ 152 (384)
...|...+++-..+.+.+.+-|.. +. ++...|.+|+++|.+.+.|......|..++...+..||.+|+.+ |++.+
T Consensus 29 ~~sG~~yv~~~~~f~~~L~~LG~~~l~~--dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~v 105 (215)
T cd07642 29 HTSGLAHVENEEQYTQALEKFGSNCVCR--DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGV 105 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHh
Confidence 344555555555566666666664 33 67789999999999999999999999999999999999999999 99999
Q ss_pred H-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhh---ccCC------CCCchHHhHHHHHHHHHHHHHHHHHhH
Q 016699 153 R-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKV---RETP------GNPDLALKLDAAEVKLHDLKSNMAILG 222 (384)
Q Consensus 153 ~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~---~e~~------~~~~~~~kl~~ae~k~~e~~~~~~~L~ 222 (384)
+ ..+|.||+.+..+|+ ... ++-+.+. |... .+.|....+..+..-|+...-.+-.-
T Consensus 106 K~d~KK~fdK~~~dyE~-----------~~~--k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~- 171 (215)
T cd07642 106 KGDLKKPFDKAWKDYET-----------KVT--KIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLK- 171 (215)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHH--HHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8 888889999999999 442 2211111 1111 11334445555555555544332111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 223 KEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 223 ~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
+..+...+-.=.|+.+..+..||.+|+++....+++|.--+
T Consensus 172 ------in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 172 ------VNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred ------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222233388999999999999999999999886544
No 55
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.96 E-value=3e-10 Score=113.19 Aligned_cols=56 Identities=36% Similarity=0.582 Sum_probs=52.4
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
-+|+++|.|++++++||.|++||+|.++.+ ++.|||+|+.+|+.|.||-|||+.+.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 479999999999999999999999998887 47899999999999999999998875
No 56
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.93 E-value=1.2e-07 Score=88.28 Aligned_cols=175 Identities=15% Similarity=0.202 Sum_probs=131.1
Q ss_pred hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (384)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~ 136 (384)
..++..+++..+..+.+..--..|+.+ +++|.. |+.+.+ |. ..+..+| ......+++|...+..++
T Consensus 26 ~~~~kL~Ke~K~Y~dav~~m~~sq~~~----se~l~e~Y~p~~~---g~---~~~~~~~---~~~d~~~~dl~~~lv~~v 92 (211)
T cd07611 26 TEGTRLQRELRAYLAAIKGMQEASKKL----TESLHEVYEPDWY---GR---DDVKTIG---EKCDLLWEDFHQKLVDGA 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCccc---cc---chHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 456778888888888866555666665 444443 333321 11 1122222 445568888888898889
Q ss_pred chHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHH
Q 016699 137 AEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEV 209 (384)
Q Consensus 137 l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~ 209 (384)
|.|+.+|+.. +.+|+ ..+|| ||+.|+.++. .+.|. ...+.||..||.
T Consensus 93 l~P~~~~~s~--f~~I~~~I~KR~hKllDYD~~r~~~~k------------------L~~k~------~kDe~KL~kAe~ 146 (211)
T cd07611 93 LLTLDTYLGQ--FPDIKNRIAKRSRKLVDYDSARHHLEA------------------LQTSK------RKDEGRIAKAEE 146 (211)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHH------------------Hhccc------cccHHHHHHHHH
Confidence 9999999998 78998 55554 7777777777 22221 113469999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 210 KLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 210 k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
.++.++..++.|+.+....++.+.+-+..++..++.+|+.+|..||..+..+-.+|...|..
T Consensus 147 el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~ 208 (211)
T cd07611 147 EFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTK 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888888889999999999999999999999888887753
No 57
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.91 E-value=2.6e-10 Score=113.70 Aligned_cols=61 Identities=28% Similarity=0.505 Sum_probs=56.5
Q ss_pred CCCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699 314 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 374 (384)
Q Consensus 314 ~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~ 374 (384)
......|.|+|.|.+++++||.|..||+|.|++...+|||.|..+|..|+||+|||..+..
T Consensus 97 q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 97 QPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred CccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence 3455789999999999999999999999999999999999999999999999999988753
No 58
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.87 E-value=5.3e-07 Score=85.38 Aligned_cols=226 Identities=16% Similarity=0.215 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccchHHHh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhH
Q 016699 9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTK 87 (384)
Q Consensus 9 ~~~~~~~a~~~q~~~~~~~~~~~~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~ 87 (384)
+|++.+.--++|.+.+++|..+ -+-+|+--.|+. +=+.|+.... .-+.+++.++.|...=+.-...-..
T Consensus 3 ~k~~~~~~~tkq~~~e~~g~~~---~~~~it~D~eL~~kle~l~~~~~-------~y~~L~~~~~~~~~~l~~l~q~q~~ 72 (229)
T PF06456_consen 3 KKMKSTYKCTKQMVSEKLGKKE---DSRAITVDDELDAKLELLRDTQR-------TYRGLLKHARAYQNRLQALSQTQKE 72 (229)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHcCccc---ccchhhcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777778999999999333 223444334544 4333333333 3334556666554332222222237
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 016699 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele 167 (384)
||+.+...|...+ .-.+|.+...+|++++.+++....++..+ ..|+.-|..|+.. -+.|.....++|+..|-|..
T Consensus 73 lg~~f~~~~~~e~---~~~l~~~f~~~~~~~~~~~~~~~~L~~~l-~~~~~~l~Tf~~k-aI~DT~~Tik~ye~aR~EY~ 147 (229)
T PF06456_consen 73 LGDFFAELGVREK---SPALGEEFSANGEAQRSLAKQGETLLKAL-KRFLSDLNTFRNK-AIPDTLLTIKKYEDARFEYD 147 (229)
T ss_dssp HHHHHHHHHH--H----CCGHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999432 22599999999999999999999998884 6789999999999 59999988899999999999
Q ss_pred HhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 168 AQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAM 247 (384)
Q Consensus 168 ~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~ 247 (384)
+ =|++++..... +.+...-...+++.++..|+++++.++.|-.++..-|.-++..+-++...+|..|
T Consensus 148 a-----------y~~~lke~~~e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~ 214 (229)
T PF06456_consen 148 A-----------YRLWLKEMSDE--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLF 214 (229)
T ss_dssp H-----------HHHHHHHHH----TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHhhcc--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9 88888765433 2233334456899999999999999999987888777777777777778899999
Q ss_pred HHHHHHHHHHHHHHH
Q 016699 248 VEAERTYHQRVLQIL 262 (384)
Q Consensus 248 veAql~Yh~q~~~iL 262 (384)
..+...||..|...|
T Consensus 215 ~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 215 QNALAAYFSGNAQAL 229 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhC
Confidence 999999999998765
No 59
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.86 E-value=2.1e-09 Score=110.45 Aligned_cols=58 Identities=33% Similarity=0.574 Sum_probs=51.5
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeeecc
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
....|.+-|||-+.+-.||||+.||+|.++... |.|||+|+.+|+.||||++||+.-.
T Consensus 804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 445678889999999999999999999999874 5799999999999999999998643
No 60
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.86 E-value=3.2e-07 Score=84.63 Aligned_cols=180 Identities=11% Similarity=0.196 Sum_probs=133.3
Q ss_pred hHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016699 63 FQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNT------LSKAALSYGRARAQMEKERGNLLKALGTQV 136 (384)
Q Consensus 63 ~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~------~g~al~~~g~a~~~l~~~~~~~~~~~~~~~ 136 (384)
+.++|+|.+=+++..+..-.-+-..++..+...+-++- ++.. .+.+|-+||.....|++.+..|+..+...+
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i--gd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~ 94 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI--GDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888776666666688888888888865 6666 999999999999999999999999999999
Q ss_pred chHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh--hhhccCCCCCchHHhHHHHHHHHHHH
Q 016699 137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ--AKVRETPGNPDLALKLDAAEVKLHDL 214 (384)
Q Consensus 137 l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~--~k~~e~~~~~~~~~kl~~ae~k~~e~ 214 (384)
+.||.+|+.- |++.++..+|+||+...++++ .|+ +.-+ .|.++ .+++.|...+.-+
T Consensus 95 ~~~L~~F~Ke-di~~~Ke~KK~FdK~se~~~~------------aL~-k~a~~s~k~K~--------~e~eEA~~~L~~~ 152 (207)
T cd07633 95 IKPLENFRKE-QIGFTKERKKKFEKDSEKFYS------------LLD-RHVNLSSKKKE--------SQLQEADLQVDKE 152 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhhhhhHHHH------------HHH-HHhcccccCCc--------hHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999 111 2211 12222 2677777776666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 215 KSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 215 ~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
+..+.....+=.-....|.....==.|.-|.+|+.|+..|+++.+.++.++.
T Consensus 153 r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~ 204 (207)
T cd07633 153 RQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 6654433222111111221111111177899999999999999999988763
No 61
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.86 E-value=1.6e-07 Score=86.76 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=122.3
Q ss_pred HhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC
Q 016699 67 IVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 67 i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
|+|.+-+++..|...+++-+.+.+.+.+.|..+-+.++...|.|+.+|+...+.|......++.++...+..||.+|+.+
T Consensus 21 l~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~ 100 (215)
T cd07641 21 VKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKG 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444446677777777777777777777777722377789999999999999999999999999999999999999999
Q ss_pred CChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH---HHHhhhhccCCC----CCchHHhHHHHHHHHHHHHHHH
Q 016699 147 APLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV---SKRQAKVRETPG----NPDLALKLDAAEVKLHDLKSNM 218 (384)
Q Consensus 147 ~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~---kkr~~k~~e~~~----~~~~~~kl~~ae~k~~e~~~~~ 218 (384)
|+|.++ ..+|.+|+....+|+ .-.-. +|...|-.+-.+ +.|....+.....-|+-..=.+
T Consensus 101 -Dlr~~K~d~KK~FdK~~kDye~-----------k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dY 168 (215)
T cd07641 101 -DLKGVKGDLKKPFDKAWKDYET-----------KFTKIEKEKREHAKQHGMIRTEITGAEIAEEMEKERRLFQLQMCEY 168 (215)
T ss_pred -HhhhhhHHHHhHHHHHHHHHHH-----------HHHHHHhhhhhhcCcccchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999 33111 111122111100 1122222322222222221111
Q ss_pred HHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 219 AILGKEAAAAMAAVESQQQRL-TLQRLIAMVEAERTYHQRVLQILDQLEGE 268 (384)
Q Consensus 219 ~~L~~e~~~~~~~ve~qqq~~-~l~~L~a~veAql~Yh~q~~~iL~qL~~e 268 (384)
-+-.+ .+... +++ .++.|..|+.||.+|+++....+++|..=
T Consensus 169 llqin-------~iq~K-k~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py 211 (215)
T cd07641 169 LIKVN-------EIKTK-KGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQY 211 (215)
T ss_pred HHHHH-------HHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 11111 122 27899999999999999999999888653
No 62
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=5.1e-09 Score=104.43 Aligned_cols=56 Identities=32% Similarity=0.514 Sum_probs=53.3
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
-+++++|||++..++||+|.+|-+|.|+.++|+|||+|-.+|..|+||-|||+.+.
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 47899999999999999999999999999999999999999999999999998764
No 63
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.79 E-value=4.2e-09 Score=105.39 Aligned_cols=55 Identities=31% Similarity=0.542 Sum_probs=51.7
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEE--EeCCeeeEecCCCeee
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEG--ECKGKAGWFPFGYIER 371 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G--~~~G~~G~fP~~YVe~ 371 (384)
...++|||.|.+++++||-|..||+|.|++++|+||+.| ++.|..|.||-|||+.
T Consensus 432 ~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 432 PLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 345899999999999999999999999999999999999 7899999999999975
No 64
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=98.76 E-value=1.6e-06 Score=79.43 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=123.8
Q ss_pred cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699 74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 74 ~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
+...|-.++|+.+.+.+.+-+.|+..-+.++.++|.+.++++-..+.+...-.++..++.+-+.=||..|+.+ |+|+.+
T Consensus 28 i~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~-dlr~~K 106 (213)
T cd07640 28 IHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKG-QLRDGR 106 (213)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHH-Hhhhhh
Confidence 5567888899888899999999887665566889999999999999999999999999999999999999999 999999
Q ss_pred -HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhh---hhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 016699 154 -HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAM 229 (384)
Q Consensus 154 -~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~---k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~ 229 (384)
..+|.+++....+|+ ... |..+. +.++. +-.+ -+...+.+.++..+..+... +-..+
T Consensus 107 ~D~KK~FeK~skDyE~-----------kl~--K~ak~~r~k~~~~-g~~~--~e~eEaae~l~~eRr~Fql~---acdYl 167 (213)
T cd07640 107 LESKKQMEKAWKDYEA-----------KIG--KLEKERREKQKQH-GLIR--LDMTDTAEDMQRERRNFQLH---MCEYL 167 (213)
T ss_pred HHHHhHHHHHHHHHHH-----------HHH--HHhccccccchhc-cccc--ccHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999 331 11111 11110 0000 12334444444444443322 11111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 230 A---AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 267 (384)
Q Consensus 230 ~---~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~ 267 (384)
. .+...+--=.|+.|..|..||.+|+++....++++.-
T Consensus 168 lkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~p 208 (213)
T cd07640 168 LKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGP 208 (213)
T ss_pred HHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111111112889999999999999999999988764
No 65
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=98.74 E-value=8.9e-09 Score=104.14 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=53.2
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 372 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l 372 (384)
....++|+|||++.++.|++|..+|+|+++...|+|||.|.. .|..|+||+|||+.+
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 345789999999999999999999999999999999999998 999999999999875
No 66
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.69 E-value=3.1e-06 Score=79.93 Aligned_cols=185 Identities=17% Similarity=0.192 Sum_probs=130.5
Q ss_pred HHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHH-hhccCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHH
Q 016699 52 RLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK-YGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLL 129 (384)
Q Consensus 52 ~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~-~g~e~~~~~~~~~g~al~~~g~a~~~l~-~~~~~~~ 129 (384)
|+..-..+++.+++++..-.+.+......|..+ ++++.. |+...+ ++ .-...-.++.+.+.|. ....++.
T Consensus 19 ~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i----~~~l~~lY~p~~~--~~--~~~~~~~y~~~v~~l~~~~~~el~ 90 (224)
T cd07591 19 RYRTMEKASTKLQKEAKGYLDSLRALTSSQARI----AETISSFYGDAGD--KD--GAMLSQEYKQAVEELDAETVKELD 90 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCC--cc--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566778888888888876555555554 555554 444443 21 1122234555555554 3445566
Q ss_pred HHHhhhhchHHHHHhcCCChHHHH-HHHHH------HHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHH
Q 016699 130 KALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLAL 202 (384)
Q Consensus 130 ~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~ 202 (384)
..+...++.|+..++.. +++++ ..+|| ||+.|+.++. .+.|... .+.
T Consensus 91 ~~~~~~V~~Pl~~~~~~--~~~i~k~IkKR~~KllDYD~~~~k~~k------------------l~~K~~k------d~~ 144 (224)
T cd07591 91 GPYRQTVLDPIGRFNSY--FPEINEAIKKRNHKLLDYDAARAKVRK------------------LIDKPSE------DPT 144 (224)
T ss_pred hHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhHhhHHHHHHHHHH------------------HHhcccC------CHH
Confidence 66888999999999987 78888 44443 6666666666 1112111 135
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 203 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEML 270 (384)
Q Consensus 203 kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~ 270 (384)
+|..||.+++++++.+..|+.+....++.+-+-+..+....+.+|+..|+.||.+....|.++..-+.
T Consensus 145 kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~ 212 (224)
T cd07591 145 KLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLD 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999998877777788889999999999999999999988877654
No 67
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.64 E-value=1.2e-08 Score=108.14 Aligned_cols=59 Identities=24% Similarity=0.487 Sum_probs=54.4
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCC-eeeEecCCCeeeccCC
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKG-KAGWFPFGYIERRDRV 375 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G-~~G~fP~~YVe~l~~~ 375 (384)
...|+|||||.+..++||+|.+|-+|+++++...|||.|..+| ..||||+|||+.+.+.
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 4679999999999999999999999999999999999999976 5799999999998763
No 68
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.62 E-value=1.7e-08 Score=95.69 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=54.7
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEee--cCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKV--TNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 378 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~--~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~ 378 (384)
..+.|||+|++.++.||+|.+||.+.|++. .|++||.++. .|+.|+||.|||+++.+-|.+
T Consensus 192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred EEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence 457899999999999999999999999987 5889999998 999999999999999765543
No 69
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=98.59 E-value=1e-05 Score=75.62 Aligned_cols=158 Identities=20% Similarity=0.182 Sum_probs=102.1
Q ss_pred HHHHHHHHhhccCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHH----HHHH
Q 016699 87 KLSEDSRKYGSDNTCTSG--NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA----QRYD 160 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~--~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~----k~y~ 160 (384)
-+.+++.+.|.-...+++ -++|.+|.++...++.|+.-.+.|...+..++|.||..-++- .-|.+..+- |.|.
T Consensus 47 ~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~k 125 (231)
T cd07643 47 AFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYK 125 (231)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456677666654443344 379999999999999999999999999999999999999996 445553444 4589
Q ss_pred HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~ 240 (384)
++|+++.. +--|.-|.++|.|... ......+..|.....+-+...+.+.+.+.+...--|+.+.-.+
T Consensus 126 k~R~elKk-----------~~~dt~klqkk~rKg~--~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~F 192 (231)
T cd07643 126 KARQEIKK-----------KSSDTIRLQKKARKGK--GDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTF 192 (231)
T ss_pred HHHHHHHH-----------HhhhHHHHHHHHhccC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 6667755555544432 2222345555443333222222222222222212244455556
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016699 241 LQRLIAMVEAERTYHQRV 258 (384)
Q Consensus 241 l~~L~a~veAql~Yh~q~ 258 (384)
+++|..+++.+.+-....
T Consensus 193 vs~l~pVl~~e~~ml~E~ 210 (231)
T cd07643 193 VSFLKPVLDEEISMLGEV 210 (231)
T ss_pred HHHHhHHHHHHHHHHhhH
Confidence 778888888777665544
No 70
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.57 E-value=4.3e-05 Score=71.57 Aligned_cols=164 Identities=19% Similarity=0.225 Sum_probs=110.7
Q ss_pred hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (384)
Q Consensus 85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ 164 (384)
++-||..+..||+. .+..++++|..++++...|+..+..-...+...|++||..|..- ++-++.-.|.....|.
T Consensus 41 ~~~fak~~~~la~~----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l--~k~~k~~~K~~~~ar~ 114 (211)
T cd07598 41 GDELAKSINAYADT----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTI--CKHARDDLKNTFTARN 114 (211)
T ss_pred HHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34678888888874 35679999999999999999999999999999999999999986 7888733343444444
Q ss_pred HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL 244 (384)
Q Consensus 165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L 244 (384)
.+-. ++.-+ .|.+.. ++.+..++..||.+++..+..+...++....-|...+.+.-.-.=..|
T Consensus 115 ~~~~-----------~~~~l----eklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l 177 (211)
T cd07598 115 KELK-----------QLKQL----EKLRQK--NPSDRQIISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIF 177 (211)
T ss_pred HHHH-----------HHHHH----HHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 33112 111111 112223444556665555555444444455555545443322223478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 245 IAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 245 ~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
.+|+..++.||.++..++..+...+.+
T Consensus 178 ~~fv~~~m~~~~kale~~~~~~~~~~~ 204 (211)
T cd07598 178 SDFVLIEMLFHAKALEVYTAAYQDIQN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999998887764
No 71
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=98.55 E-value=8.7e-06 Score=75.70 Aligned_cols=162 Identities=12% Similarity=0.161 Sum_probs=110.6
Q ss_pred HHHHHHHHhhc-cCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGS-DNTC-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (384)
Q Consensus 87 ~l~~~m~~~g~-e~~~-~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ 164 (384)
.++..+..|-. .|+| +.|...+.+|-+|+.+...|+..+..|...+...++.||.+|+.. |++.++..+|+||+...
T Consensus 41 ~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~ke-dL~~~Ke~KK~FdK~Se 119 (215)
T cd07631 41 LTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKER-DLKEILTLKEVFQIASN 119 (215)
T ss_pred HHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Confidence 67888888872 2443 466679999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 165 EAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL 244 (384)
Q Consensus 165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L 244 (384)
++++-++=-.+||+.++ ++.-..+.+..+..+...|....=.+. -.+..++....=-.|..|
T Consensus 120 ~~d~Al~K~a~lsk~K~-----------~E~~~eea~~~v~~tR~~F~~~aLdYv-------~qLn~lQ~rKKfefLe~l 181 (215)
T cd07631 120 DHDAAINRYSRLSKRRE-----------NEKVKYEVTEDVYTSRKKQHQTMMHYF-------CALNTLQYKKKIALLEPL 181 (215)
T ss_pred HHHHHHHHHhcCCCCCC-----------chHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 99992222222222211 110001123345556666665442211 111122221111127889
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Q 016699 245 IAMVEAERTYHQRVLQ-ILDQLEG 267 (384)
Q Consensus 245 ~a~veAql~Yh~q~~~-iL~qL~~ 267 (384)
.+|+.|+..|+++.++ +..++..
T Consensus 182 Ls~m~A~~tFFhqG~e~L~~dl~~ 205 (215)
T cd07631 182 LGYMQAQISFFKMGSENLNEQLEE 205 (215)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999 4334443
No 72
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=98.52 E-value=2e-05 Score=72.92 Aligned_cols=162 Identities=13% Similarity=0.163 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcc-CC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSD-NT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (384)
Q Consensus 87 ~l~~~m~~~g~e-~~-~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ 164 (384)
.|+.-+..|... |+ |.+|...+.||.+|+.+...|...+..|+..+...++.||.+|+.. |++.++..+|.||+...
T Consensus 41 ~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~Ke-Dl~~vKe~KK~FdK~Se 119 (215)
T cd07632 41 QLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREK-DLTEVSTLKDLFGIASN 119 (215)
T ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhH
Confidence 567777888763 33 3577789999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhhhhccCCcccHHHHHHHhhhhccC-CCCCchHHhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 016699 165 EAEAQLVISSSLKPSQAIEVSKRQAKVRET-PGNPDLALKLDAAEVKLHDLKSNMA-ILGKEAAAAMAAVESQQQRLTLQ 242 (384)
Q Consensus 165 ele~~~~~~~~l~~~rrld~kkr~~k~~e~-~~~~~~~~kl~~ae~k~~e~~~~~~-~L~~e~~~~~~~ve~qqq~~~l~ 242 (384)
++++-++=-+.||+ | |+. ...+++...+..+..+|....=.+- .|+.=..+. ..+= |.
T Consensus 120 ~~d~AL~Knaqlsk-----------k-K~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RK--Kfei------LE 179 (215)
T cd07632 120 EHDLSMAKYSRLPK-----------K-RENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRK--RVAM------LE 179 (215)
T ss_pred HHHHHHHHHhhCCc-----------C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HH
Confidence 99991111111111 1 111 0011122235555555555332211 111001111 1222 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 243 RLIAMVEAERTYHQRVLQILDQLEGEM 269 (384)
Q Consensus 243 ~L~a~veAql~Yh~q~~~iL~qL~~eL 269 (384)
-|.+|+.|+.+|+++.++++.+-.+..
T Consensus 180 ~mLsym~Aq~TFFhQGyeL~~~~~~~~ 206 (215)
T cd07632 180 PMLGYTHGQINFFKKGAELFSKKLDSF 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987654443
No 73
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.50 E-value=3.7e-08 Score=91.29 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=56.4
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 378 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~ 378 (384)
...++++|||.+.++++|.|++||++.|+.+..+.||..+. .|+.|++|.+||+.+.+..++
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~ 186 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASAS 186 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcc
Confidence 45688999999999999999999999999999999999998 999999999999998765543
No 74
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.41 E-value=6.9e-05 Score=69.57 Aligned_cols=183 Identities=13% Similarity=0.174 Sum_probs=141.6
Q ss_pred hHHHHhhhhcccccCCC--cccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Q 016699 63 FQRDIVRGVEGYIVTGS--KQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL 140 (384)
Q Consensus 63 ~~~~i~r~~e~~~~~~~--~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL 140 (384)
.-+.+++.++.|...=+ .|.+. .||+.+...|...+ +- . |.+...+|++++-+++....++..+. -|+.-|
T Consensus 17 ~y~~Ll~~~~~~~~~~~~l~q~q~--~lG~~f~~l~~~~~--~~-a-~~~f~~~~~a~r~~~k~g~~ll~~l~-~~~~~l 89 (203)
T cd00011 17 KYESVLQLGRALTAHLYSLSQTQH--ALGDAFADLSQKDP--EL-A-GEEFGYNAEAQKLLCKNGETLLGAVN-FFVSSI 89 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC--cH-H-HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHH
Confidence 45556666666544322 23444 79999999999876 21 2 89999999999999999999988775 588889
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699 141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI 220 (384)
Q Consensus 141 ~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~ 220 (384)
..|+.. -+.|.....++|...|-|..+ =|+|++........+ ..-...+++.++..+++.++.++.
T Consensus 90 ~T~~~k-ai~DT~lTI~~ye~aR~EY~a-----------~~l~~ke~~~e~~~~--~~~~~~k~r~~q~~~~~~k~kf~k 155 (203)
T cd00011 90 NTLVTK-AIEDTLLTVKQYEAARLEYDA-----------YRLDLKELSLEPRDD--TAGTRGRLRSAQATFQEHRDKFEK 155 (203)
T ss_pred HHHHhh-hcchHHHHHHHHHHHHHhHHH-----------HHHHHHHhcccCCcc--cccchHHHHHHHHHHHHHHHHHHH
Confidence 999999 599999888999999999999 888887553332211 111234788888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
|-.++..-+--++...-++...+|..|..|...||..|...|++..
T Consensus 156 Lr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~ 201 (203)
T cd00011 156 LRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTL 201 (203)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 8777776666667766777788999999999999999999998764
No 75
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.5e-07 Score=94.71 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=51.0
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEEEEeec---CCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT---NNGWAEGECKGKAGWFPFGYIERRDRV 375 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~---d~gW~~G~~~G~~G~fP~~YVe~l~~~ 375 (384)
.+-|+|||+++.++||+|.+||-++|+.+. +.+||-++.+|+.|+||.||+-...++
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence 478999999999999999999999999984 447999999999999999999776544
No 76
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=98.37 E-value=3e-07 Score=84.09 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=51.3
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR 372 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l 372 (384)
...+++|||.+++.+|.+|.-||.|.-+...|+||..|.+ +|..|..|.||||.+
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 5689999999999999999999999999999999999987 999999999999864
No 77
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.36 E-value=7.5e-05 Score=69.14 Aligned_cols=186 Identities=14% Similarity=0.185 Sum_probs=139.5
Q ss_pred hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Q 016699 60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEP 139 (384)
Q Consensus 60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~P 139 (384)
+...-+.|++.++.|...=+.-+..-..||+.+...|...+ .+-.+...+|++++-|+..-..++..+ .-|+.-
T Consensus 14 ~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p-----~l~~af~~~aet~k~l~kng~~Ll~al-~~f~s~ 87 (201)
T cd07660 14 TQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSP-----ELQEEFTYNAETQKLLCKNGETLLGAL-NFFVSS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 33355567777777654433223333379999999999876 467899999999999999988777665 468888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHH
Q 016699 140 LRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA 219 (384)
Q Consensus 140 L~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~ 219 (384)
|..++.. -+.|....-++|+..|-|..+ =|+|+.... .++...+.-.+.+.++.+++++++.++
T Consensus 88 l~T~~~k-ai~DT~lTI~~ye~aR~EYda-----------yr~D~ee~~----~~~~~~~~l~r~~~~q~~~~~~k~kf~ 151 (201)
T cd07660 88 LNTLVNK-TMEDTLMTVKQYESARIEYDA-----------YRNDLEALN----LGPRDAATSARLEEAQRRFQAHKDKYE 151 (201)
T ss_pred HHHHHHh-hccHHHHHHHHHHhhhHhHHH-----------HhccHHHcc----cCCCccchHhhHHHHHHHHHHHHHHHH
Confidence 9999998 588988888899999999999 777765322 223233344467778888888888877
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 220 ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 267 (384)
Q Consensus 220 ~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~ 267 (384)
.|-+.+...|--++...-++...||.-|..|...||..|..+|++.-.
T Consensus 152 KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~ 199 (201)
T cd07660 152 KLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLK 199 (201)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 776667777666666666666779999999999999999999887543
No 78
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.35 E-value=3.2e-07 Score=84.44 Aligned_cols=57 Identities=23% Similarity=0.427 Sum_probs=52.8
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l 372 (384)
....+.++|||++..+++|.|..||+|.|+...+..||.|.+.|+.|+||++||...
T Consensus 162 ~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~ 218 (222)
T KOG3601|consen 162 TNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS 218 (222)
T ss_pred cchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence 345689999999999999999999999999999999999999999999999998654
No 79
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.5e-07 Score=90.87 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=49.0
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeec-----CCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVT-----NNGWAEGEC--KGKAGWFPFGYIERRDR 374 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-----d~gW~~G~~--~G~~G~fP~~YVe~l~~ 374 (384)
..|+|+|||.+.++.||+|++||++.|..+. +..||.... +|..||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 5699999999999999999999999998763 445777765 67889999999998865
No 80
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.26 E-value=0.00016 Score=66.94 Aligned_cols=190 Identities=13% Similarity=0.192 Sum_probs=124.6
Q ss_pred hhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016699 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVA 137 (384)
Q Consensus 58 ~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l 137 (384)
+.|+...+.|++.+..++..=+.-+..-.-||+.+...|.--+ ...+..+...+|++++.|++.-..+++.++ -|+
T Consensus 12 ~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~---~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~ 87 (215)
T cd07659 12 EQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP---QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PML 87 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHH
Confidence 3344445555555555544333333333468999999888632 235889999999999999999999999875 689
Q ss_pred hHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHH------
Q 016699 138 EPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL------ 211 (384)
Q Consensus 138 ~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~------ 211 (384)
.-|.+++.. -+.|..-..++|...|-|..+ =|+|++-....-.+.....+..-.+..+.-.|
T Consensus 88 s~l~T~l~K-aipDT~lTikkY~~ar~EY~a-----------yc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRc 155 (215)
T cd07659 88 SDLGTYLNK-AIPDTKLTIKKYADVKFEYLS-----------YCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRC 155 (215)
T ss_pred HHHHHHHHh-hCchHHHHHHHHHHHHHHHHH-----------HHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHH
Confidence 999999999 599999888889999999999 88888644221111000001111222222222
Q ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 212 -HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD 263 (384)
Q Consensus 212 -~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~ 263 (384)
++.+..++.|-.++..-|.-+|...-..-..+|..|+.|...||..|..++.
T Consensus 156 rq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 156 RQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444344555555455443334467999999999999999998863
No 81
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=98.24 E-value=7.1e-05 Score=72.10 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=52.5
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERR 372 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l 372 (384)
...|.++|+|++..++||....||++++-+...+|||.|+..|..|.||+.||+..
T Consensus 363 k~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 363 KILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999999864
No 82
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=98.24 E-value=1.4e-07 Score=97.95 Aligned_cols=60 Identities=40% Similarity=0.677 Sum_probs=55.5
Q ss_pred CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeeccC
Q 016699 315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRDR 374 (384)
Q Consensus 315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~~ 374 (384)
-+.+.+.++..|.+..++||+|..+|++.|+.+.++||++|++ +|..||||..||+.|..
T Consensus 606 ~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 606 WDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred cCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 3567789999999999999999999999999999999999998 89999999999998864
No 83
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.18 E-value=5.6e-06 Score=77.05 Aligned_cols=61 Identities=36% Similarity=0.413 Sum_probs=53.9
Q ss_pred CCCcceeEeeccC--CCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccC
Q 016699 314 AMGYFLGEVVHPY--QAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDR 374 (384)
Q Consensus 314 ~~~~~~a~alydy--~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~ 374 (384)
+..+.+|+|+++- .+-+...|.+.+||+|.|...+-+|-|+|+++|+.|.||..||+....
T Consensus 224 ~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~ 286 (293)
T KOG4792|consen 224 QNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV 286 (293)
T ss_pred cCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence 4456678999884 567888999999999999999999999999999999999999998754
No 84
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1.7e-06 Score=86.41 Aligned_cols=53 Identities=25% Similarity=0.539 Sum_probs=49.3
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEEEEeec--CCCeeEEEeCCeeeEecCCCeee
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVT--NNGWAEGECKGKAGWFPFGYIER 371 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~--d~gW~~G~~~G~~G~fP~~YVe~ 371 (384)
.+.++|+|.++..++|+|.+||+|+++.+. .++||.|..+|..|+||.|||..
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 799999999999999999999999999885 45899999999999999999964
No 85
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.07 E-value=0.0011 Score=62.03 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHH-------HHHHHHHHHHhhhhhccCCcccH
Q 016699 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQLVISSSLKPSQA 181 (384)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~-------y~~~r~ele~~~~~~~~l~~~rr 181 (384)
.....+..+.+.|...-..-+..+...++.|+..+..- ++.++.+.++ ||+.|..++. .
T Consensus 71 ~~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k-----------~- 136 (216)
T cd07599 71 ARLSRYVKALEELKKELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK-----------L- 136 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH-----------H-
Confidence 45566777777776666666778899999999999997 8888844432 4444444433 1
Q ss_pred HHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 182 IEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQI 261 (384)
Q Consensus 182 ld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~i 261 (384)
.+.| . ..+.....+|..|+.+|+++++.+..|+.+....++.+-+-...+.-..+.+|+--|++|+...+..
T Consensus 137 -----~~~k-~--~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~ 208 (216)
T cd07599 137 -----LQKK-K--ELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEY 208 (216)
T ss_pred -----HhcC-C--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 1233456799999999999999999999999998887766555566668888999999999888777
Q ss_pred HHH
Q 016699 262 LDQ 264 (384)
Q Consensus 262 L~q 264 (384)
+..
T Consensus 209 l~~ 211 (216)
T cd07599 209 LQE 211 (216)
T ss_pred HHh
Confidence 643
No 86
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.05 E-value=0.00099 Score=61.20 Aligned_cols=198 Identities=13% Similarity=0.151 Sum_probs=113.0
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG 126 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~ 126 (384)
...+++|........+-...|++...++-. ....||.++...+..... .+..++.++..+|++...+.....
T Consensus 10 ~~~v~~le~~l~~l~~~~~~~~k~~~~l~~-------~~~elg~~~~~Ls~~e~~-~~~~l~~~~~~~~~~~~~~~~~~~ 81 (218)
T cd07596 10 KDYILKLEEQLKKLSKQAQRLVKRRRELGS-------ALGEFGKALIKLAKCEEE-VGGELGEALSKLGKAAEELSSLSE 81 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHH
Confidence 344445554444433444445555443211 111467777777765430 112599999999999999999999
Q ss_pred HHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHH-HH--HhhhhccCCC-----CC
Q 016699 127 NLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEV-SK--RQAKVRETPG-----NP 198 (384)
Q Consensus 127 ~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~-kk--r~~k~~e~~~-----~~ 198 (384)
+........|++||..++.- +..++....+.+.+...++. -.-++ ++ +..|.+..+. ..
T Consensus 82 ~~~~~~~~~~~e~L~~y~~~--~~s~k~~l~~R~~~~~~~~~-----------~~~~l~~k~~~~~kl~~~~~~~~~ki~ 148 (218)
T cd07596 82 AQANQELVKLLEPLKEYLRY--CQAVKETLDDRADALLTLQS-----------LKKDLASKKAQLEKLKAAPGIKPAKVE 148 (218)
T ss_pred HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhcCCCchhHHH
Confidence 99999999999999999874 66666444443344444433 11122 11 1112111110 11
Q ss_pred chHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 199 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 199 ~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL 265 (384)
....++..++...+.++..+..+.......+...+.....-.-..|..|++.+..|++.+..++..+
T Consensus 149 ~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~ 215 (218)
T cd07596 149 ELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESL 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1223444445555555444444433333333333332222234578899999999999999988765
No 87
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=98.02 E-value=0.0017 Score=60.95 Aligned_cols=159 Identities=14% Similarity=0.244 Sum_probs=92.8
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHH------HH
Q 016699 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQR------YD 160 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~------y~ 160 (384)
||..+...|.-- .+..++.+|..+|++...+..........-...|.+||+.|+-- +.-++ .+..| |+
T Consensus 64 ~~~~~~~la~~E---~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~--~~svk~~l~~R~~~~~~~~ 138 (236)
T PF09325_consen 64 FGSSFSQLAKSE---EEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRY--IESVKEALNRRDKKLIEYQ 138 (236)
T ss_pred HHHHHHHhhccc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 455555555432 34569999999999999999999999999999999999998763 45554 22222 23
Q ss_pred HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCC-----CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGN-----PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ 235 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~-----~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~q 235 (384)
.+-..+.. ++.... |....+.+ .....++..++.+.+.++..+..........+...+..
T Consensus 139 ~a~~~l~k-----------kk~~~~----kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~ 203 (236)
T PF09325_consen 139 NAEKELQK-----------KKAQLE----KLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE 203 (236)
T ss_pred HHHHHHHH-----------HHHHHh----cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 222221 11111101 11223344444444444444333333333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 236 QQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 236 qq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
...-.-..|..|++.+..|++++..++..+.
T Consensus 204 k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 204 KVKDFKSMLEEYAESQIEYQKKMLEAWETFL 234 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 2222345899999999999999999988764
No 88
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=98.02 E-value=8.4e-07 Score=89.99 Aligned_cols=59 Identities=27% Similarity=0.471 Sum_probs=54.9
Q ss_pred CCcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 315 MGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 315 ~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
.+...++|+.||...+++||.|+++|+|++++..|+-.|.|+.+|-+||||+.||+.++
T Consensus 546 ~~~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 546 TGAKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred hhhHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999875
No 89
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.92 E-value=0.0013 Score=60.95 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=94.8
Q ss_pred HHHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699 88 LSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (384)
Q Consensus 88 l~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e 165 (384)
|+.++..||.-+.. ..+..++.+|-.+|.+..++.....++......+|++||+.|+.= ..-++...++-+..+..
T Consensus 47 l~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y--~~svk~~l~~R~~~q~~ 124 (200)
T cd07624 47 YFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLY--SDAVKDVLKRRDQFQIE 124 (200)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45555555554331 233459999999999999999999999999999999999998764 34444333322333333
Q ss_pred HHHhhhhhccCCcccHHHH-HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 166 AEAQLVISSSLKPSQAIEV-SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRL 244 (384)
Q Consensus 166 le~~~~~~~~l~~~rrld~-kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L 244 (384)
.+. . .|. .+++.+ ...++..++.+|+.....+ ..|..+. +...+.=.-..|
T Consensus 125 ~e~-----------~-~e~L~~k~~~---------l~~ev~~a~~~~e~~~~~~---~~E~~rF----~~~K~~d~k~~l 176 (200)
T cd07624 125 YEL-----------S-VEELNKKRLE---------LLKEVEKLQDKLECANADL---KADLERW----KQNKRQDLKKIL 176 (200)
T ss_pred HHH-----------H-HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHH
Confidence 333 1 122 212111 3446777888888777652 2333322 222222224489
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016699 245 IAMVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 245 ~a~veAql~Yh~q~~~iL~qL 265 (384)
..|++.+..|++++..++..+
T Consensus 177 ~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 177 LDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999887664
No 90
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=97.92 E-value=0.00082 Score=62.19 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=107.4
Q ss_pred HHHHHHHHHhhh-hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHH-HHHHH
Q 016699 48 QRLERLYISTRA-GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQ-MEKER 125 (384)
Q Consensus 48 ~~~e~l~~~~~~-~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~-l~~~~ 125 (384)
..+|+-|..... ++.+++++...++.+...-..+... ....|.-|+.+.+ +. . .+.-.+..+... .....
T Consensus 8 d~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~---~~~~~d~y~~~~~---~~-~-~~~~~~~~~~~~~~~~~~ 79 (195)
T cd07589 8 DELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLA---LEVVLDLYPSNHP---RL-E-SKWERFRRVVRGISSKAL 79 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCCh---hh-H-HHHHHHHHHHHHHHHHHH
Confidence 334444444333 3455555555555432222223332 2333334554433 11 1 123344433333 35578
Q ss_pred HHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhH
Q 016699 126 GNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKL 204 (384)
Q Consensus 126 ~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl 204 (384)
.++...+...++.||..++.- ++.++ ..+| =.. +.+||-+-+.+.. ++
T Consensus 80 ~e~~~~i~~~V~~Pl~~~~~~--~~~~~k~I~K--------R~~-----------KllDYdr~~~~~~----------k~ 128 (195)
T cd07589 80 PEFKSRVRKLVIEPLSSLLKL--FSGPQKLIQK--------RYD-----------KLLDYERYKEKKE----------RG 128 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHH--------Hhh-----------hhccHHHHHHHHH----------hh
Confidence 899999999999999999987 78888 4444 233 4457744333321 24
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 205 DAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL 262 (384)
Q Consensus 205 ~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL 262 (384)
..++.+++++++.+..|+......++.+-.-...+.-.+|.+|+..|.+||..+...+
T Consensus 129 ~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 129 GKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777888888888877788888877665566677799999999999999988765
No 91
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.87 E-value=0.011 Score=56.26 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=100.1
Q ss_pred HHHHHHHHhhc-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCC-ChHHHH-HHHHH---HH
Q 016699 87 KLSEDSRKYGS-DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA-PLDDAR-HLAQR---YD 160 (384)
Q Consensus 87 ~l~~~m~~~g~-e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~-~lk~~~-~~~k~---y~ 160 (384)
-+|.+|..-|. |. ++.++++|..+|+++.+|......-...-.-.|.+||+.|+--. .+|.+. .|.+- |+
T Consensus 61 efa~s~~~L~~~E~----~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~ 136 (234)
T cd07664 61 AFAKSAAMLGNSED----HTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQ 136 (234)
T ss_pred HHHHHHHHHHcCcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777776666 43 24699999999999999999999999999999999999987630 244444 44443 35
Q ss_pred HHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 016699 161 RMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 240 (384)
Q Consensus 161 ~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~ 240 (384)
..-..|.. +|.-.-|.....+.+ ...+...+++.++.+-++.+..+..++.-....+...+..+..=.
T Consensus 137 ~a~~~L~k-----------kr~~~~Kl~~~~k~d-K~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~df 204 (234)
T cd07664 137 DAQVTLQK-----------KREAEAKLQYANKPD-KLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDF 204 (234)
T ss_pred HHHHHHHH-----------HHHHHHHHhhcCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 553322211111111 122344455655555555555544443333333332322222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 241 LQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 241 l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
-..+..|++.+..|..++...+..+.
T Consensus 205 k~~l~~fles~ie~qke~ie~We~f~ 230 (234)
T cd07664 205 KTVIIKYLESLVQTQQQLIKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788888899999988888877654
No 92
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=97.87 E-value=0.0083 Score=56.66 Aligned_cols=206 Identities=12% Similarity=0.131 Sum_probs=119.8
Q ss_pred CCCCcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhH
Q 016699 31 YGGSDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS 108 (384)
Q Consensus 31 ~~~~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g 108 (384)
|.-+|++..++..-- .+.+|=+|+.+.+..-.-.+++.- ...-+|.++..-|.-- ..+.++
T Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~--------------~~~~f~~s~~~L~~~E---~~~~Ls 69 (224)
T cd07623 7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELAL--------------NTGSFAKSAAMLSNCE---EHTSLS 69 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcc---cchhHH
Confidence 333566554443322 556666666666652222222221 2224677777777622 234699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH-HHHHH---HHHHHHHHHHhhhhhccCCcccHH
Q 016699 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR-HLAQR---YDRMRQEAEAQLVISSSLKPSQAI 182 (384)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~-~~~k~---y~~~r~ele~~~~~~~~l~~~rrl 182 (384)
++|..+|++..+|......-...-...|.+||..|+- + -+|++. .|.+- |+.+...|.. +|.
T Consensus 70 ~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~-svk~~f~~R~~a~~~~q~a~~~l~k-----------kr~ 137 (224)
T cd07623 70 RALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIG-AIKDVFHERVKVWQNWQNAQQTLTK-----------KRE 137 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
Confidence 9999999999999999999999999999999999876 3 255555 44433 3555555555 442
Q ss_pred HHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 183 EVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL 262 (384)
Q Consensus 183 d~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL 262 (384)
-.-|.....+.+ ...+...+++.++.+.++.+..+..+..-....+...+..+..=.-..|..|++.+..|..++.+.+
T Consensus 138 ~~~Kl~~~~~~~-K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~W 216 (224)
T cd07623 138 AKAKLELSGRTD-KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYW 216 (224)
T ss_pred HHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111110000 1122344566666666666555555543333333333222222224478888999999999998887
Q ss_pred HHHH
Q 016699 263 DQLE 266 (384)
Q Consensus 263 ~qL~ 266 (384)
..+.
T Consensus 217 e~~~ 220 (224)
T cd07623 217 EAFL 220 (224)
T ss_pred HHhc
Confidence 7653
No 93
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=97.84 E-value=0.0055 Score=57.46 Aligned_cols=163 Identities=18% Similarity=0.288 Sum_probs=104.2
Q ss_pred hhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHH
Q 016699 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMR 163 (384)
Q Consensus 85 ~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r 163 (384)
++.|+..+..|++.=. + ++-.+|-.|++....+++-++..+..+...++.||..|-.. .|.++ .+++ ..+.|
T Consensus 48 ~D~lak~l~~yA~~E~--~--~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~--cK~~r~elK~-~~~ar 120 (219)
T PF06730_consen 48 GDELAKQLQDYANTEN--P--NLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTI--CKHARDELKK-FNKAR 120 (219)
T ss_pred hHHHHHHHHHHHhcCC--c--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHH-HHHHH
Confidence 4588999999988533 3 45669999999999999999999999999999999999875 88888 4544 22222
Q ss_pred HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 016699 164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR 243 (384)
Q Consensus 164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~ 243 (384)
..--. +.--+- |.+. ++|.+.+.+-.|+..+..+.-...--.+.....+-..|.|.-+=.=.-
T Consensus 121 ~kEik-----------q~~~Le----klr~--k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i 183 (219)
T PF06730_consen 121 NKEIK-----------QLKQLE----KLRQ--KNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKI 183 (219)
T ss_pred HHHHH-----------HHHHHH----HHHc--cCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 110111 2221 133333345556665555543322222233444444555422112235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 244 LIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 244 L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
|..||..++-||..+.+++..-...+..
T Consensus 184 ~sdFv~iEM~fHaKALEv~T~a~q~i~~ 211 (219)
T PF06730_consen 184 FSDFVTIEMVFHAKALEVYTAAYQDIQN 211 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999999999988887764
No 94
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.84 E-value=0.0081 Score=57.07 Aligned_cols=211 Identities=15% Similarity=0.120 Sum_probs=119.8
Q ss_pred HHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC
Q 016699 20 QAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN 99 (384)
Q Consensus 20 q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~ 99 (384)
.+++|||+ -- -|+.- |++...-+-+.+=.+ .+++...++.+.....--.....-||..+...|..-
T Consensus 4 rk~lkq~~-~p---~d~~~----el~~~rp~vk~~y~~------~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E 69 (230)
T cd07625 4 RKTLKQFA-PP---YDEYT----ELAEFRPLVKSIYLT------AQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE 69 (230)
T ss_pred HHhhhccC-cC---CCCCH----HHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36899998 33 37655 888666666554222 235555555543221111112225788887777654
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCc
Q 016699 100 TCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKP 178 (384)
Q Consensus 100 ~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~ 178 (384)
+ .+.+|+|+.++|++...++.....-...-...|-+||..++. +.-.+. .+..|+.-+|.-...|-.+.+
T Consensus 70 ~---~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~--~~~~vKealtnR~~~~re~~qAq~~~~~---- 140 (230)
T cd07625 70 T---HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISR--DAYVVKEALTNRHLLMRELIQAQQNTKS---- 140 (230)
T ss_pred c---cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3 346999999999999999999999999999999999999887 355555 444444444433333000000
Q ss_pred ccHHHHHHHhhhhccCCC-CCchHHhHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 179 SQAIEVSKRQAKVRETPG-NPDLALKLDAAEVKLHDLKSN-----------MAILGKEAAAAMAAVESQQQRLTLQRLIA 246 (384)
Q Consensus 179 ~rrld~kkr~~k~~e~~~-~~~~~~kl~~ae~k~~e~~~~-----------~~~L~~e~~~~~~~ve~qqq~~~l~~L~a 246 (384)
++.-.. |.+-.+. .++ |+..|...+++.... +..|..|..+........ .-..+..
T Consensus 141 -K~~~~~----rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~d----l~~~l~e 208 (230)
T cd07625 141 -KQEAAR----RLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEED----LQSAIRE 208 (230)
T ss_pred -HHHHHH----HHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 221111 1111111 121 444444444433222 223333444333222221 1337888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016699 247 MVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 247 ~veAql~Yh~q~~~iL~qL 265 (384)
|+..+..|+++....|+.+
T Consensus 209 y~~~~ie~erk~l~~lE~~ 227 (230)
T cd07625 209 YTLRKIEYERKKLSLLERI 227 (230)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877654
No 95
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.76 E-value=2.4e-05 Score=82.42 Aligned_cols=56 Identities=27% Similarity=0.505 Sum_probs=48.5
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe-CCeeeEecCCCeeeccC
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC-KGKAGWFPFGYIERRDR 374 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~-~G~~G~fP~~YVe~l~~ 374 (384)
-...|||||-+..+..|++.+||.+.|+..+.+ .|++.+. +|+ ||||+||+..+..
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence 468999999999999999999999999998755 4888887 666 9999999987653
No 96
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=1.1e-05 Score=81.34 Aligned_cols=60 Identities=28% Similarity=0.544 Sum_probs=53.2
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEe-CCeeeEecCCCeeeccCCCch
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGEC-KGKAGWFPFGYIERRDRVLAS 378 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~-~G~~G~fP~~YVe~l~~~pa~ 378 (384)
.+|++|||..++.+||++..||++.+... ..+|||+|.+ .|..|.||+.||+++....++
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~s 65 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVAS 65 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccch
Confidence 58999999999999999999999998876 4779999998 999999999999998654333
No 97
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.72 E-value=0.025 Score=53.09 Aligned_cols=160 Identities=10% Similarity=0.136 Sum_probs=100.1
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH----HHHHH---H
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR----HLAQR---Y 159 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~----~~~k~---y 159 (384)
-||.++..-|.-- .+..++.+|..+|++..++..........-...|.+||+.|+-- +--++ .|.+. |
T Consensus 43 efa~~~~~L~~~E---~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~~ 117 (216)
T cd07627 43 EFAETLEALSSLE---LSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQYW 117 (216)
T ss_pred HHHHHHHHHHHhh---cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4677777776532 23579999999999999999999998888888888899998763 44444 22222 3
Q ss_pred HHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCC-----CCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016699 160 DRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPG-----NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES 234 (384)
Q Consensus 160 ~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~-----~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~ 234 (384)
+.+-..|.. .|... .|.....+ ......+++.++.+.+.++..+..+.......+...+.
T Consensus 118 ~~~~~~L~k-----------~~~~~----~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~ 182 (216)
T cd07627 118 QSAESELSK-----------KKAQL----EKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER 182 (216)
T ss_pred HHHHHHHHH-----------HHHHH----HHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 33222 11111000 11233455556666666666655555545555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 235 QQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 235 qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.+..-.-..|..|++++..+++.+.+.+..+.
T Consensus 183 ~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~ 214 (216)
T cd07627 183 ERVEDFRNSVEIYLESAIESQKELIELWETFY 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333355888999999999999988887654
No 98
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.68 E-value=4.3e-05 Score=79.47 Aligned_cols=101 Identities=13% Similarity=0.232 Sum_probs=74.5
Q ss_pred hhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCC---CCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016699 60 GKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTC---TSG-NTLSKAALSYGRARAQMEKERGNLLKALGTQ 135 (384)
Q Consensus 60 ~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~---~~~-~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~ 135 (384)
|-.|.+.|.+..-.+|.--..-.....++++.+..+--|.=. +.| -..+.+|-.||....++++++..|+.++...
T Consensus 32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~ 111 (812)
T KOG1451|consen 32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASES 111 (812)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345888888888777765444445556777777766444210 111 1278899999999999999999999999999
Q ss_pred hchHHHHHhcCCChHHHHHHHHHHHH
Q 016699 136 VAEPLRAMVLGAPLDDARHLAQRYDR 161 (384)
Q Consensus 136 ~l~PL~~~~~~~~lk~~~~~~k~y~~ 161 (384)
+|+||.+|-.- -+-.+.+++|+||+
T Consensus 112 li~PlekFRkE-qIG~~KE~KkKydK 136 (812)
T KOG1451|consen 112 LIEPLEKFRKE-QIGTLKEEKKKYDK 136 (812)
T ss_pred HHhHHHHHHHH-HhhhhHHHHhhhhh
Confidence 99999998765 46666688888854
No 99
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.68 E-value=5.9e-06 Score=81.09 Aligned_cols=62 Identities=21% Similarity=0.419 Sum_probs=57.2
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCCCc
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRVLA 377 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~pa 377 (384)
....+.+++||.+....||.|.+||++.+....+.+||.|...|.+||||.+|+..++..|.
T Consensus 174 ~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 174 AAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred hhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 34568899999999999999999999999999999999999999999999999999876665
No 100
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.60 E-value=0.017 Score=52.95 Aligned_cols=125 Identities=10% Similarity=0.118 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHH
Q 016699 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVS 185 (384)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~k 185 (384)
++|.+|-.+|.+...++....++...+..+|++||+.++.= ...++...+.-+..+-.++. - .|+.
T Consensus 58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y--~~s~k~~lk~R~~kq~d~e~-----------l-~e~l 123 (185)
T cd07628 58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHY--ILSLKNLIKLRDQKQLDYEE-----------L-SDYL 123 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHH-----------H-HHHH
Confidence 49999999999999999999999999999999999998763 33344333322222222222 0 0111
Q ss_pred HHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 186 KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 186 kr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL 265 (384)
...+...|+..++..... ....+...+....+=.-..|.+|++.+..|++.+...+..+
T Consensus 124 --------------l~~~ve~a~~~~e~f~~~-------~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~ 182 (185)
T cd07628 124 --------------LTDEVENAKETSDAFNKE-------VLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKV 182 (185)
T ss_pred --------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111445555555554433 33333333333222234589999999999999998887665
No 101
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=97.56 E-value=0.011 Score=56.58 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc
Q 016699 18 QQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS 97 (384)
Q Consensus 18 ~~q~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~ 97 (384)
++|-++.++| -++-++-.|-|.|+ |-| +-+|+=.+.|++..-.|-..=+-.++.-..||+.+.....
T Consensus 108 tkQillEklG-----k~~rTVD~ElEaQi----e~L----rd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~ 174 (341)
T KOG3876|consen 108 TKQILLEKLG-----KGSRTVDLELEAQI----EVL----RDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQ 174 (341)
T ss_pred HHHHHHHHhc-----CCccccCHHHHHHH----HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666 24567766666553 222 2222222333333333211112223333467777766554
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 016699 98 DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLK 177 (384)
Q Consensus 98 e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~ 177 (384)
..+ .+-.-.-.-.++++-+++.-+.++..+ .-||.....++.+ -++|..+..+.|++.|-|.+.
T Consensus 175 K~~-----elq~eft~nseTqr~l~kngetLl~al-nfFIsSvnTl~nk-Ti~DTL~Ti~qyEsARiEyDa--------- 238 (341)
T KOG3876|consen 175 KSP-----ELQEEFTYNSETQRLLGKNGETLLGAL-NFFISSVNTLVNK-TIEDTLMTIKQYESARIEYDA--------- 238 (341)
T ss_pred cCH-----HHHHHhCcCHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhh-hhHHHHHHHHHhhhhhhhhhh---------
Confidence 333 122222223567777877777776655 5789999999998 799999889999999999999
Q ss_pred cccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 178 PSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 257 (384)
Q Consensus 178 ~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q 257 (384)
-|-|+...--+-++.. ....+..|+.+|++-++.++.|-.++.--|.-+|..+..+.-.||.-|-.|-..|+.-
T Consensus 239 --yR~Dle~~~l~P~~~~----t~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYfsG 312 (341)
T KOG3876|consen 239 --YRTDLEELTLGPRDAL----TKNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYFSG 312 (341)
T ss_pred --hhhhHHHhcCCccccc----cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 8888854333322221 2236888999999999999999888888887776655555566888888888888887
Q ss_pred HHHHHHHHHHHHH
Q 016699 258 VLQILDQLEGEML 270 (384)
Q Consensus 258 ~~~iL~qL~~eL~ 270 (384)
....|++--.++.
T Consensus 313 Nak~LE~tlkqf~ 325 (341)
T KOG3876|consen 313 NAKQLEQTLKQFN 325 (341)
T ss_pred cHHHHHHHHHHhc
Confidence 7777666555443
No 102
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.50 E-value=0.0027 Score=70.01 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=107.4
Q ss_pred CCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHH
Q 016699 77 TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA 156 (384)
Q Consensus 77 ~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~ 156 (384)
.+.--+.+.+.++.-...+....+ .+...|.+|.+|..+...+......+...+...+..||.+|+++ ||+++...+
T Consensus 50 ~~~~~~~~~~~f~~~~~d~~~~~~--~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~-dl~~v~~~k 126 (785)
T KOG0521|consen 50 AGKEFVQATEQFGKGLKDLFSLGQ--DEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKG-DLHEVKELK 126 (785)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhhhh
Confidence 343334444456666666644433 55568999999999999999999999999999999999999999 999999889
Q ss_pred HHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 016699 157 QRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQ 236 (384)
Q Consensus 157 k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qq 236 (384)
+.++++.++.+. -+.-+.+..++.+ .....+.+.++..+..+|+-+.-.+. .+...++...
T Consensus 127 k~f~ka~~~~d~-----------a~~k~~~l~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~y~-------~~ln~~q~kk 187 (785)
T KOG0521|consen 127 KLFEKASEEYDL-----------ALVKYSRLPKKRR-SKVKTEVEEELAAARRKFQLTALDYV-------LALNVLQAKK 187 (785)
T ss_pred HHHHHHHhhHHH-----------HHHHhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHH-------Hhhhhhhccc
Confidence 999999999999 4432211111111 22233344477777777777765521 1111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 237 QRLTLQRLIAMVEAERTYHQRVLQIL 262 (384)
Q Consensus 237 q~~~l~~L~a~veAql~Yh~q~~~iL 262 (384)
+-..++-+..|+.|+..|+.+....+
T Consensus 188 ~~~~le~~l~~~~aq~~fF~~g~~l~ 213 (785)
T KOG0521|consen 188 QFEILETLLGFMHAQINFFKQGEDLL 213 (785)
T ss_pred chHHHHHHHHHHHhccchhcccHhHH
Confidence 22225566666666666666655433
No 103
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.49 E-value=0.056 Score=51.80 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=93.2
Q ss_pred HHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 89 SEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 89 ~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
.+....||.=+.. .....+|.+|-.+|.+..++.....+....+..+|++||+.|+-= ...++...++-+.+..++
T Consensus 88 ~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y--~~slK~vlk~R~~~Q~~l 165 (243)
T cd07666 88 FEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLY--SETLMGVIKRRDQIQAEL 165 (243)
T ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4444555543321 224459999999999999999999999999999999999998874 344443333224444455
Q ss_pred HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA 246 (384)
Q Consensus 167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a 246 (384)
+. .+ |+..+. +.+ + .....+++..+.+.++.... +..|.. ..+.+.++=.-.-+..
T Consensus 166 e~-----------k~-e~l~k~---~~d-r-~~~~~ev~~~e~kve~a~~~---~k~e~~----Rf~~~k~~D~k~~~~~ 221 (243)
T cd07666 166 DS-----------KV-EALANK---KAD-R-DLLKEEIEKLEDKVECANNA---LKADWE----RWKQNMQTDLRSAFTD 221 (243)
T ss_pred HH-----------HH-HHHHhh---hhh-H-HHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
Confidence 55 33 221111 111 0 13445677777777776333 222222 2223322223447889
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016699 247 MVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 247 ~veAql~Yh~q~~~iL~qL 265 (384)
|++.+..|+++|...++.+
T Consensus 222 yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 222 MAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 104
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=97.44 E-value=0.034 Score=52.96 Aligned_cols=162 Identities=9% Similarity=0.101 Sum_probs=94.0
Q ss_pred HHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcC-CChHHHH-HHHHHH---HHH
Q 016699 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDAR-HLAQRY---DRM 162 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~-~~lk~~~-~~~k~y---~~~ 162 (384)
+|.+|..-|.-- .++.++++|..+|+++.+|....+.-...-.-.|-+||..|+-- ..+|.+- .|.+.| +.+
T Consensus 62 Fa~s~~~L~~~E---~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~ 138 (234)
T cd07665 62 FAKSLAMLGSSE---DNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDA 138 (234)
T ss_pred HHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444444321 34579999999999999999999999999999999999998753 0255555 555554 555
Q ss_pred HHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016699 163 RQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ 242 (384)
Q Consensus 163 r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~ 242 (384)
-.+|.. +|.-..|.....+.+ +...+..+++.++.+.++.+..+..++.-....+...+.....= +.
T Consensus 139 ~~~l~k-----------Kr~~~~Kl~~~~~~d-K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~D-fk 205 (234)
T cd07665 139 QAMLQK-----------KREAEARLLWANKPD-KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKD-FK 205 (234)
T ss_pred HHHHHH-----------HHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 555655 554332222111111 12223445555555555555444433332222222222211111 33
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Q 016699 243 -RLIAMVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 243 -~L~a~veAql~Yh~q~~~iL~qL 265 (384)
.+..|++++.....++...+..+
T Consensus 206 ~~v~~fles~ie~qke~ie~We~f 229 (234)
T cd07665 206 NHIIKYLETLLHSQQQLVKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777888888888777766554
No 105
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=97.39 E-value=0.017 Score=53.74 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=93.4
Q ss_pred HHHHHHHhhccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699 88 LSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (384)
Q Consensus 88 l~~~m~~~g~e~~--~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e 165 (384)
|+.++..||.-|. +..+..+|.+|-.+|.+...+...-++.... ..+|++||+.|+.= ...++...|+.+-.+.+
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~y--a~slk~vlk~r~~~q~~ 123 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFF--ADSLRAVCKKHELLQYD 123 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5667777776554 2345689999999999999988888887766 48899999998874 44455444433444444
Q ss_pred HHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 166 AEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI 245 (384)
Q Consensus 166 le~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~ 245 (384)
++. -- |...++.. + ...+++.|...+++.. .++.+.+...+.+...=.-..|.
T Consensus 124 ~e~-----------~~-~~L~~k~~--~------l~~~ve~a~~~~e~f~-------~~~~~E~~rF~~~K~~dlk~~l~ 176 (201)
T cd07622 124 LEK-----------AE-DALANKKQ--Q------GEEAVKEAKDELNEFV-------KKALEDVERFKKQKVRDLKEILI 176 (201)
T ss_pred HHH-----------HH-HHHHHHHH--H------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 11 33111111 0 2224444444444333 32333333333332222345899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016699 246 AMVEAERTYHQRVLQILDQLEGE 268 (384)
Q Consensus 246 a~veAql~Yh~q~~~iL~qL~~e 268 (384)
+|+..+..|++.+..++..+..-
T Consensus 177 ~~A~~qi~~~~~~~~~W~~~~~~ 199 (201)
T cd07622 177 SYAKLQIKLAKKGLQTWTNIKEC 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 106
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.26 E-value=0.071 Score=49.04 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=87.6
Q ss_pred HHHHHHHhhccCCC----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699 88 LSEDSRKYGSDNTC----TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (384)
Q Consensus 88 l~~~m~~~g~e~~~----~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r 163 (384)
|+.++.++|.-|.. .++..++.+|-++|.+.-.....-+++...+..+|.+||+.++.= ...++...+.++..+
T Consensus 38 l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~y--~~s~k~vlk~R~~K~ 115 (187)
T cd07629 38 LAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQF--AGVVRELLKYRKLKH 115 (187)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45555555554331 122369999999999999999999999999999999999999884 556665444222222
Q ss_pred HHHHHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Q 016699 164 QEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQ- 242 (384)
Q Consensus 164 ~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~- 242 (384)
...+. ...-. ..++..+..++.+..+. .+..|..+.-..-.. -+.
T Consensus 116 ~Q~e~------------------l~~~L---------~e~~~~~~~~~~~~~~~--~~~~el~rF~~ek~~-----dl~~ 161 (187)
T cd07629 116 VQYEM------------------TKDSL---------LESALVAASDDLVISST--IKQKDLPRFQREREA-----DLRE 161 (187)
T ss_pred HHHHH------------------HHHHH---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHH-----HHHH
Confidence 22222 00011 11233444455555322 122222222211111 133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 243 RLIAMVEAERTYHQRVLQILDQLEG 267 (384)
Q Consensus 243 ~L~a~veAql~Yh~q~~~iL~qL~~ 267 (384)
-|..|+..+..|..+|..++.+++.
T Consensus 162 ~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 162 ILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999987754
No 107
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.24 E-value=0.093 Score=50.15 Aligned_cols=151 Identities=13% Similarity=0.201 Sum_probs=98.2
Q ss_pred HHHHHHhhccCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 89 SEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 89 ~~~m~~~g~e~~~--~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
..+...||.-|.. .-...+|..|-.|+.+..+....-+++.......|+.+|+.|+.= ....+...|+-|-..-++
T Consensus 85 ~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y--~~slk~vlK~RdqkQ~d~ 162 (240)
T cd07667 85 LVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILY--SESMKNVLKKRDQVQAEY 162 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4444555555442 344569999999999999999999999999999999999998873 333335555444444445
Q ss_pred HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA 246 (384)
Q Consensus 167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a 246 (384)
|. .+|+...++. +++.-+.+.+++...++..+.+..+.+...+...+.=.-..|..
T Consensus 163 E~------------l~E~l~~rre------------~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~ 218 (240)
T cd07667 163 EA------------KLEAVALRKE------------ERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMG 218 (240)
T ss_pred HH------------HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 1122111111 34444555666655555555555555544444333223558999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016699 247 MVEAERTYHQRVLQILDQL 265 (384)
Q Consensus 247 ~veAql~Yh~q~~~iL~qL 265 (384)
|.+.+..||+.|..+++.+
T Consensus 219 ~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 219 MADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 108
>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.00036 Score=73.23 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=48.7
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeecc
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD 373 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~ 373 (384)
+..++|+|.|-++.+++|.|.+||+|.++...+.-||-+.+ ....|+||+|||-.++
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence 45789999999999999999999999999987777777766 4567999999996553
No 109
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=97.17 E-value=0.0002 Score=75.42 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=50.3
Q ss_pred cceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeeccCC
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERRDRV 375 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l~~~ 375 (384)
...+.++|||.+.+..||++.+||++.|+.. .-+||.++. .|+.|+||+|-+..+.+.
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCc
Confidence 3478999999999999999999999998876 457999988 899999999988776543
No 110
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=97.15 E-value=0.023 Score=59.85 Aligned_cols=54 Identities=26% Similarity=0.481 Sum_probs=44.9
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEE-EEeecCCCeeEEEeCCeeeEecCCCeeec
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVV-VRKVTNNGWAEGECKGKAGWFPFGYIERR 372 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~-V~~~~d~gW~~G~~~G~~G~fP~~YVe~l 372 (384)
.+..+|...+....+|+|..|.++. |.+...+||+.|..+|+.|++|+|||+.+
T Consensus 758 k~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 758 RVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 4677888888888889999998887 66677888999999999999999998764
No 111
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=0.00032 Score=76.66 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=47.4
Q ss_pred ceeEeeccCCCC--------CCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCeeec
Q 016699 318 FLGEVVHPYQAE--------SDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIERR 372 (384)
Q Consensus 318 ~~a~alydy~a~--------~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe~l 372 (384)
....|+|||++- .+.||+|++|+||.|+.. +.+|++.|+++|+.|++|+|+|..+
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence 456899999874 456899999999999876 4678999999999999999999765
No 112
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=97.01 E-value=0.00043 Score=74.45 Aligned_cols=60 Identities=17% Similarity=0.478 Sum_probs=52.8
Q ss_pred CCCcceeEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEE--eCCeeeEecCCCeeecc
Q 016699 314 AMGYFLGEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGE--CKGKAGWFPFGYIERRD 373 (384)
Q Consensus 314 ~~~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~--~~G~~G~fP~~YVe~l~ 373 (384)
.+..+.|.++|.|.+.+++++++.+|+++.|++.+ .+||-+++ ++|..|+||.+||+...
T Consensus 575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CCCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 33456799999999999999999999999998875 77999999 69999999999998754
No 113
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.99 E-value=0.3 Score=45.39 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=103.4
Q ss_pred CcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc-cCCCCCCChhHHH
Q 016699 34 SDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS-DNTCTSGNTLSKA 110 (384)
Q Consensus 34 ~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~-e~~~~~~~~~g~a 110 (384)
+|++..++-... .|.+|-+++..+...-.-.+++.-.. ..+|.++..-|. |.+ +...++++
T Consensus 2 ~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~--------------~~fs~al~~L~~~E~~--~~~~l~~~ 65 (198)
T cd07630 2 VDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANAL--------------GHLSSSLQLCVGLDEA--SVVALNRL 65 (198)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccccc--chHhHHHH
Confidence 355555555443 67777777777765333333222221 235555544444 322 32379999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH-HHHHH---HHHHHHHHHHhhhhhccCCcccHHHH
Q 016699 111 ALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR-HLAQR---YDRMRQEAEAQLVISSSLKPSQAIEV 184 (384)
Q Consensus 111 l~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~-~~~k~---y~~~r~ele~~~~~~~~l~~~rrld~ 184 (384)
|.+++++...|....+....+-...|.+||+.|+- + -.|++. .|.+. |++.-+.++. .
T Consensus 66 l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~-a~K~~l~~R~~~~~~~~~a~k~l~K-----------a---- 129 (198)
T cd07630 66 CTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSE-SEKDMLFRRTCKLIEFENASKALEK-----------A---- 129 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----------h----
Confidence 99999999999999999999999999999999765 2 245555 33332 3443333333 1
Q ss_pred HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 185 SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD 263 (384)
Q Consensus 185 kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~ 263 (384)
|..| ++ .++.....|+.+|++..+. +...+...+..+..-.=.-|..|++.+...-..+..++.
T Consensus 130 --r~~k-~~-----~ae~~~~~a~~~fe~iS~~-------~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 130 --KPQK-KE-----QAEEAKKKAETEFEEISSL-------AKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred --HHhh-HH-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11 1445666677777776655 222222222211111122566677777666666655543
No 114
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=96.78 E-value=0.48 Score=44.77 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~ 145 (384)
.+|.++...|+- .++.++++|.++|++..+|.+........---.|-++|+.|+-
T Consensus 63 ~fs~al~~L~~~----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r 117 (219)
T cd07621 63 KISAALTQLATS----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMR 117 (219)
T ss_pred HHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 455555555542 4468999999999999999999988888888889999999876
No 115
>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]
Probab=96.62 E-value=0.001 Score=66.18 Aligned_cols=56 Identities=30% Similarity=0.445 Sum_probs=51.2
Q ss_pred ceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l~ 373 (384)
..=|+++.|-+..++||-|..||.|.|-...++-|++|.+ +|++|+||+.|+-.+.
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd 320 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVD 320 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecC
Confidence 4468999999999999999999999999988999999987 9999999999997764
No 116
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=96.61 E-value=0.32 Score=45.05 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=116.2
Q ss_pred HHHHhhhhcccccC--CCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Q 016699 64 QRDIVRGVEGYIVT--GSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR 141 (384)
Q Consensus 64 ~~~i~r~~e~~~~~--~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~ 141 (384)
-..+.|.+|-|-.. --.|.|+ -||+.+...|.... +-. |+-....|.+...-++.+..... =-.-|...+.
T Consensus 18 ~~~Llk~i~~yq~~l~~lsq~e~--~LG~fl~e~~~~d~--t~a--g~~m~~t~KaL~~sg~qrl~~r~-pl~~f~~~v~ 90 (204)
T cd07661 18 CLELLKIIDNYQERLCILSQEEN--VLGKFLKEQGKIDK--TTA--GKMMAATGKALSFSSQQRLALRV-PLLRLYQEVE 90 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccCh--hhh--ccHHHHHHHHHHHhHHHHHHHHh-hHHHHHHHHH
Confidence 34555555554322 1234555 78999998888765 211 34444444444444444333311 1234555677
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhh-hccCCCCCchHHhHHHHHHHHHHHHHHHHH
Q 016699 142 AMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAI 220 (384)
Q Consensus 142 ~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k-~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~ 220 (384)
.|... -+.|..+..++|+..|-|..+ -|+|++.-... -++... ...+++.++..+...++.++.
T Consensus 91 Tf~~r-ai~Dtl~Ti~~~E~aR~EY~a-----------~~~~mk~~s~eldP~~~~---~l~kfr~aQ~qvr~~K~kfdk 155 (204)
T cd07661 91 TFRER-AIADTLQTIQRMEKCRTEYRA-----------ALLWMKSVSQELDPDTYK---QLEKFRKAQAQVRSAKERFDK 155 (204)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhcccHH-----------HHHHHHHHhhhcCCccch---hHHHHHHHHHHHHHHHHHHHH
Confidence 77777 488888888899999999999 88877543321 122222 334788888888888887777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 221 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 267 (384)
Q Consensus 221 L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~~ 267 (384)
|-.++..-.--++..+-++.-.+|..+-.+.+.|+......|..+..
T Consensus 156 Lk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~ 202 (204)
T cd07661 156 LKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHE 202 (204)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75555544444455566666779999999999999999998887764
No 117
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.55 E-value=0.00086 Score=69.63 Aligned_cols=54 Identities=19% Similarity=0.355 Sum_probs=45.7
Q ss_pred ceeEeeccCCCCCCC-------CcccCCCCEEEEEeecCCCeeEEEeC-----CeeeEecCCCeee
Q 016699 318 FLGEVVHPYQAESDV-------ELTLSVGDYVVVRKVTNNGWAEGECK-----GKAGWFPFGYIER 371 (384)
Q Consensus 318 ~~a~alydy~a~~~~-------ELsf~~GdiI~V~~~~d~gW~~G~~~-----G~~G~fP~~YVe~ 371 (384)
..++|+|||++..+. .|+|..|||+.|++..|.+||.+.+. +..|.+|+...+.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 568999999988765 58999999999999999999999873 5679999976543
No 118
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=96.53 E-value=0.0012 Score=68.34 Aligned_cols=56 Identities=21% Similarity=0.486 Sum_probs=49.7
Q ss_pred cceeEeeccCCCCCCCCcccCCCCE-EEEEeecCCCeeEEEe--CCeeeEecCCCeeec
Q 016699 317 YFLGEVVHPYQAESDVELTLSVGDY-VVVRKVTNNGWAEGEC--KGKAGWFPFGYIERR 372 (384)
Q Consensus 317 ~~~a~alydy~a~~~~ELsf~~Gdi-I~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~l 372 (384)
...+.++|||.+..+.+|+|..||. ..+++..+..||..+. .|..|++|.|||...
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 3468999999999999999999999 6677778889999876 789999999999865
No 119
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=96.51 E-value=0.0057 Score=67.35 Aligned_cols=58 Identities=24% Similarity=0.413 Sum_probs=48.6
Q ss_pred cceeEeeccCCC------CCCCCcccCCCCEEEEEeec-CCCeeEEEe-CCeeeEecCCCeeeccC
Q 016699 317 YFLGEVVHPYQA------ESDVELTLSVGDYVVVRKVT-NNGWAEGEC-KGKAGWFPFGYIERRDR 374 (384)
Q Consensus 317 ~~~a~alydy~a------~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~-~G~~G~fP~~YVe~l~~ 374 (384)
...+.+.|+|++ ..+.||.+.+|++|+|...+ .+|+++|+. .|+.|.+|+|||+.+.+
T Consensus 447 ~q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 447 AQPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred cceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 345788888877 34568999999999999876 558999998 99999999999998753
No 120
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=96.36 E-value=0.54 Score=44.84 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
+-+++.|+..++.+..+.++|+.-..- -|...|.. ...+|+.-..+.+ +..+ ++|..++..|......++..
T Consensus 4 ~~g~~~l~~~~~~G~~~ckel~~f~kERa~IE~~YAK--~L~kLa~k~~k~~---~~~~-Gtl~~aw~~~~~e~e~~a~~ 77 (239)
T cd07658 4 QKGFEELRRYVKQGGDFCKELATVLQERAELELNYAK--GLSKLSGKLSKAS---KSVS-GTLSSAWTCVAEEMESEADI 77 (239)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh---ccCC-CcHHHHHHHHHHHHHHHHHH
Confidence 457788999999998888888765531 01111211 1113443333233 2224 57999999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..+...+...+..||+.|+..
T Consensus 78 H~~la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 78 HRNLGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 121
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=96.31 E-value=1 Score=42.58 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCCcccccchHHHh--hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhH
Q 016699 31 YGGSDNVVTDEAELH--QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS 108 (384)
Q Consensus 31 ~~~~~~~~~~e~e~~--~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g 108 (384)
+--+|++.-+|-.-. .|.+|=+++...+..-.--+.+.- .-+ .++..|..-+.| .++.++
T Consensus 18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~------------~~~--~~s~al~~l~~e----e~t~L~ 79 (218)
T cd07663 18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVAD------------DYI--HISAALNSVAAE----EPTVIK 79 (218)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH--HHHHHHHhhccc----ccchHH
Confidence 334677775554322 777777777766653333332221 111 344444433322 445799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (384)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~ 145 (384)
++|.++|++..+|...+.....+---.|.++|+.|+-
T Consensus 80 kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r 116 (218)
T cd07663 80 KYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYML 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 9999999999999999999988888899999999875
No 122
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=96.13 E-value=0.00088 Score=62.06 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=46.6
Q ss_pred eEeeccCCCCCCCCcccCCCCEEEEEeec-CCCeeEEEeCCeeeEecCCCeee
Q 016699 320 GEVVHPYQAESDVELTLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPFGYIER 371 (384)
Q Consensus 320 a~alydy~a~~~~ELsf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~~YVe~ 371 (384)
+.++|+|.+...+||+|.+||.+.++... +-+|...+..|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 56789999999999999999999988874 55899999999999999999854
No 123
>smart00721 BAR BAR domain.
Probab=96.00 E-value=0.43 Score=44.46 Aligned_cols=151 Identities=10% Similarity=0.144 Sum_probs=90.3
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhhhhhhH------HHHhhhhc----c---cccC--CCcccchhhHHHHHHHHhhc
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ------RDIVRGVE----G---YIVT--GSKQVEIGTKLSEDSRKYGS 97 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~------~~i~r~~e----~---~~~~--~~~~~e~~~~l~~~m~~~g~ 97 (384)
.++|...|..+. .+..+++|+..+.. |. +....... . +..+ .....+....+|.+|.
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~---y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~---- 98 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKL---YLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALD---- 98 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHH----
Confidence 456666777777 88888888876665 44 22222111 1 1111 0111111112333333
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 016699 98 DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLK 177 (384)
Q Consensus 98 e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~ 177 (384)
.+|.++..+++++..+.....+++..+..-+..-+.....- .+.-.++...||+.|.++++
T Consensus 99 --------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~kk~~~~~lDyD~~~~kl~~--------- 159 (239)
T smart00721 99 --------KLGEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKA--RKKLERKLLDYDSARHKLKK--------- 159 (239)
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHH--HHHHHhHHHHHHHHHHHHHH---------
Confidence 36677788888888887778888887777666655555543 33333777889999999998
Q ss_pred cccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHH
Q 016699 178 PSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSN 217 (384)
Q Consensus 178 ~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~ 217 (384)
+++...+..+. ...+.+.+++.|+.+|+++...
T Consensus 160 ------~~~~~~~~~~~-kl~~~e~el~~ak~~fe~~~~~ 192 (239)
T smart00721 160 ------AKKSKEKKKDE-KLAKAEEELRKAKQEFEESNAQ 192 (239)
T ss_pred ------HHHhccCChhh-hhhhHHHHHHHHHHHHHHHHHH
Confidence 22222121111 3455677999999999997654
No 124
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.94 E-value=1.6 Score=41.73 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC--------CCCCChhHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--------CTSGNTLSKAALSYGRAR 118 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~--------~~~~~~~g~al~~~g~a~ 118 (384)
...+-+|+.+......-.+.++++.++.- .-. ..+|..+...|...+ +..-..+..+|..+|.-.
T Consensus 28 r~~I~~l~~~~~~l~~l~er~~kR~~~~A---~d~----~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~ 100 (246)
T cd07597 28 RERIRRLLESWTKLRVLAERYEKRSQQQA---ADR----AEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHF 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555421 111 134555555555432 111156788999999999
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH---HHHHH-----HHHHHHHHHHhhhhhccCCcccHHHHHHHhhh
Q 016699 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR---HLAQR-----YDRMRQEAEAQLVISSSLKPSQAIEVSKRQAK 190 (384)
Q Consensus 119 ~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~---~~~k~-----y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k 190 (384)
..+...-.+-.....+.|++||+.|++- +--.+ .|.++ |+++.+..+. . +++..+
T Consensus 101 ~~~s~~~~~~a~~~~~~vlE~Lk~~~d~--l~S~r~lf~R~~k~~~~~i~~l~~ri~~-----------~----~~kl~~ 163 (246)
T cd07597 101 QLLSDLSEDEARAEEDGVLEKLKLQLDL--LVSLRDLFERHEKLSLNNIQRLLKRIEL-----------N----KKKLES 163 (246)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHHHHHHhcccccHHHHHHHHHH-----------H----HHHHHH
Confidence 9999999999999999999999998874 54444 44442 3445444444 1 122222
Q ss_pred hccCC-CCCchHHhHHHHHHHHHHHHHHHHHh-H-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 191 VRETP-GNPDLALKLDAAEVKLHDLKSNMAIL-G-----KEAAAAMA-AVESQQQRLTLQRLIAMVEAERTYHQRVLQIL 262 (384)
Q Consensus 191 ~~e~~-~~~~~~~kl~~ae~k~~e~~~~~~~L-~-----~e~~~~~~-~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL 262 (384)
.+..+ ..+. ++..-++.....++....+ + ++....-. -+.+.++ +....|..|+..+..||.....++
T Consensus 164 l~~~~~~~~~---e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W 239 (246)
T cd07597 164 LRAKPDVKGA---EVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVW 239 (246)
T ss_pred hhcCCCCchh---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111 3333333333333222211 1 11111111 1122222 667799999999999999999888
Q ss_pred HHHHH
Q 016699 263 DQLEG 267 (384)
Q Consensus 263 ~qL~~ 267 (384)
..|..
T Consensus 240 ~~L~~ 244 (246)
T cd07597 240 ERLVP 244 (246)
T ss_pred HHhcc
Confidence 77754
No 125
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=95.58 E-value=2.2 Score=40.41 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERG 126 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~ 126 (384)
+.+++-|+.++..+..|.++|..-.-- ....--+-+..|..-..+|.... ..+.|..++..+-.....|+..+.
T Consensus 4 d~G~~~l~~r~~~g~~~~~el~~f~ke---Ra~iE~eYak~L~kLakk~~~~~---~~gsl~~a~~~i~~e~e~~a~~H~ 77 (236)
T cd07651 4 DAGFDVIQTRIKDSLRTLEELRSFYKE---RASIEEEYAKRLEKLSRKSLGGS---EEGGLKNSLDTLRLETESMAKSHL 77 (236)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccCCC---CcchHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888887777653310 00000112223444444444211 224589999999999999999999
Q ss_pred HHHHHHhhhhchHHHHHhcC
Q 016699 127 NLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 127 ~~~~~~~~~~l~PL~~~~~~ 146 (384)
.|...+...+.+||..|...
T Consensus 78 ~~a~~L~~~v~~~l~~~~~~ 97 (236)
T cd07651 78 KFAKQIRQDLEEKLAAFASS 97 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998774
No 126
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.07 E-value=0.86 Score=42.93 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 016699 103 SGNTLS-KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168 (384)
Q Consensus 103 ~~~~~g-~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~ 168 (384)
.|.+|- .||-++|+..+.+-...-+.+......+++||+.|+.. |++-.++.+++|+.....+++
T Consensus 56 idqdYT~~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~-~i~~~Ke~rk~Fd~~q~kyD~ 121 (214)
T cd07609 56 IDQDYTPLALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKS-DIRPYKELRKNFEYYQRKYDS 121 (214)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334454 59999999999999777777777779999999999999 999999888889988888888
No 127
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.99 E-value=3.6 Score=39.49 Aligned_cols=91 Identities=10% Similarity=0.157 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
|.|++-|+.+++.+..+.+.|..-.- - -..+| -+..|..-..++..- ...+.|..++..+-.....|+..
T Consensus 4 ~~G~~~L~~r~k~g~~~~~el~~f~k----e-Ra~IEe~Yak~L~kLakk~~~~---~~~gt~~~~w~~i~~~~e~~a~~ 75 (261)
T cd07648 4 NNGFDVLYHNMKHGQIAVKELADFLR----E-RATIEETYSKALNKLAKQASNS---SQLGTFAPLWLVLRVSTEKLSEL 75 (261)
T ss_pred CcChHHHHHHHHhHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhcCC---CCcCcHHHHHHHHHHHHHHHHHH
Confidence 67788888888888777777765431 0 01112 111223222333221 13456888999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..|...+. .++.||..+++.
T Consensus 76 H~~l~~~L~-~~~~~l~~~~~~ 96 (261)
T cd07648 76 HLQLVQKLQ-ELIKDVQKYGEE 96 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH
Confidence 999999995 688888887653
No 128
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=94.91 E-value=2.7 Score=37.80 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhc--cCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKERG 126 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~--e~~~~~~~~~g~al~~~g~a~~~l~~~~~ 126 (384)
+++.|+.+++.+..+.++|..-.-- ....--|-+..|..-+.++.. +.| + +.|..+...+......++..+.
T Consensus 1 g~~~l~~~~~~g~~~~~e~~~f~ke---Ra~iE~eYak~L~kLak~~~~~~~~~--~-~t~~~~w~~~~~e~~~~a~~h~ 74 (191)
T cd07610 1 GFELLEKRTELGLDLLKDLREFLKK---RAAIEEEYAKNLQKLAKKFSKKPESG--K-TSLGTSWNSLREETESAATVHE 74 (191)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcccCCC--C-CcHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777666666665543311 000001111223333333332 223 3 5799999999999999999999
Q ss_pred HHHHHHhhhhchHHHHHhcCCChHHH
Q 016699 127 NLLKALGTQVAEPLRAMVLGAPLDDA 152 (384)
Q Consensus 127 ~~~~~~~~~~l~PL~~~~~~~~lk~~ 152 (384)
.|...+...+.+|++.+... .+..
T Consensus 75 ~~a~~l~~~i~~~~~~~~~~--~~~~ 98 (191)
T cd07610 75 ELSEKLSQLIREPLEKVKED--KEQA 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 99999999999999998885 5543
No 129
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=94.81 E-value=3.7 Score=38.78 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=61.5
Q ss_pred CcccccchHH-Hh-hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHH
Q 016699 34 SDNVVTDEAE-LH-QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAA 111 (384)
Q Consensus 34 ~~~~~~~e~e-~~-~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al 111 (384)
+|++.-+|.- |- +|.+|-+|+.+.+..-.--+.+.-.. ..+|.++..-|.. ..+.+.++|
T Consensus 21 ~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~--------------~~~s~sl~~L~~~----e~t~L~~~l 82 (218)
T cd07662 21 VDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDY--------------NRIGSSLYTLGTQ----DSTDICKFF 82 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhccc----cchhHHHHH
Confidence 5677655432 22 88889888888887444433332221 1455555555553 345799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc
Q 016699 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (384)
Q Consensus 112 ~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~ 145 (384)
.+++++..+|...+.....+=--.+.+-|+.|+-
T Consensus 83 ~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r 116 (218)
T cd07662 83 LKVSELFDKTRKIEARVAADEDLKLSDLLKYYLR 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999998887766655556666666543
No 130
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.80 E-value=4.3 Score=39.47 Aligned_cols=91 Identities=8% Similarity=0.145 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
|.|++-|+.++..++...+.+..-.- - -..+| -+..|..-+.+++.- +..+.|..++..+-.....|+..
T Consensus 11 ~~G~~~L~~r~k~g~~~~kel~~f~k----e-Ra~iEe~Yak~L~kLak~~~~~---~~~Gt~~~~~~~~~~e~e~~a~~ 82 (269)
T cd07673 11 NSGFDVLYHNMKHGQISTKELSDFIR----E-RATIEEAYSRSMTKLAKSASNY---SQLGTFAPVWDVFKTSTEKLANC 82 (269)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHhhhccC---CCcChHHHHHHHHHHHHHHHHHH
Confidence 66777888888877777766654331 0 01111 112333333343211 13345888899998899999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..|...+. +.+.+|..|.+.
T Consensus 83 H~~la~~L~-~~~~~l~~~~~~ 103 (269)
T cd07673 83 HLELVRKLQ-ELIKEVQKYGEE 103 (269)
T ss_pred HHHHHHHHH-HHHHHHHHHHHH
Confidence 999999998 488999999864
No 131
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.67 E-value=0.052 Score=62.36 Aligned_cols=60 Identities=27% Similarity=0.415 Sum_probs=54.8
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeeccCC
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRDRV 375 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~~~ 375 (384)
+.-++.++|+|..-++.+.+.++||++++.....-+||..+++-+-|++|+.||+.+.+-
T Consensus 967 g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 445788999999999999999999999998888899999999999999999999998764
No 132
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=94.29 E-value=5 Score=38.05 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC--CCCCCChhHHHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKER 125 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~--~~~~~~~~g~al~~~g~a~~~l~~~~ 125 (384)
.+++.|+..++.+..|.++|..-.-- ....-.|-+..|..-+.+|..-. +......+..++-.+-.....++..+
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~ke---Ra~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H 81 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKE---RAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQH 81 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655543211 11111112223333333333211 10023457788889988999999999
Q ss_pred HHHHHHHhhhhchHHHHHhcC
Q 016699 126 GNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 126 ~~~~~~~~~~~l~PL~~~~~~ 146 (384)
..+...+..+++.||..|+..
T Consensus 82 ~~~a~~l~~~v~~~l~~~~~~ 102 (251)
T cd07653 82 ELIAENLNSNVCKELKTLISE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999873
No 133
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=94.06 E-value=0.043 Score=59.43 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=40.5
Q ss_pred eeccCCCCCCCCcccCCCCEEEEEeecCC-CeeEEEe--CCeeeEecCCCee
Q 016699 322 VVHPYQAESDVELTLSVGDYVVVRKVTNN-GWAEGEC--KGKAGWFPFGYIE 370 (384)
Q Consensus 322 alydy~a~~~~ELsf~~GdiI~V~~~~d~-gW~~G~~--~G~~G~fP~~YVe 370 (384)
+-.+|+...++.|-|..||.|+|++.... -||.|.. +++.|.||.+-|.
T Consensus 379 a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 379 ARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 33455568889999999999999998654 5999965 8899999998876
No 134
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=93.85 E-value=6.3 Score=37.63 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC-C-CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016699 51 ERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-T-CTSGNTLSKAALSYGRARAQMEKERGNL 128 (384)
Q Consensus 51 e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~-~-~~~~~~~g~al~~~g~a~~~l~~~~~~~ 128 (384)
|-|..+++..-.|.++|.+-+=- ....--|-+..|..-+.+|..-. + .++++....+...+=+--..++..++.+
T Consensus 8 ~~l~~~~~~ei~lLe~i~~F~re---Ra~iE~EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~~ 84 (237)
T cd07657 8 EALLKRQDAELRLLETMKKYMAK---RAKSDREYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQH 84 (237)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665543210 01011111223333334443321 1 1345666777888888888899999999
Q ss_pred HHHHhhhhchHHHHHhcCCChHHHH
Q 016699 129 LKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 129 ~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
..++..++++||..++. |++.++
T Consensus 85 ae~l~~~i~~~l~~l~~--~~~~~r 107 (237)
T cd07657 85 AEALESGTLDKLTLLIK--DKRKAK 107 (237)
T ss_pred HHHHHhhhhHHHHHHHH--HHHHHH
Confidence 99999999999988887 466655
No 135
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=93.50 E-value=0.15 Score=36.69 Aligned_cols=36 Identities=31% Similarity=0.668 Sum_probs=29.4
Q ss_pred ccCCCCEEEEEeecCCC-eeEE-EeCCeeeEecCCCee
Q 016699 335 TLSVGDYVVVRKVTNNG-WAEG-ECKGKAGWFPFGYIE 370 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~g-W~~G-~~~G~~G~fP~~YVe 370 (384)
.+..|+.|.|+.....+ |++. ..+|..||++..||.
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46788999999886655 9999 459999999999984
No 136
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=93.38 E-value=0.2 Score=47.66 Aligned_cols=140 Identities=12% Similarity=0.146 Sum_probs=98.1
Q ss_pred HHHHhcCCC-CCCCcccccchHHHh-hhHHHHHHHHHhhhhhhhHH---------HHhhhhcccccCCCcccc-hhhHHH
Q 016699 22 VFKQFGGGG-YGGSDNVVTDEAELH-QHQRLERLYISTRAGKHFQR---------DIVRGVEGYIVTGSKQVE-IGTKLS 89 (384)
Q Consensus 22 ~~~~~~~~~-~~~~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~~---------~i~r~~e~~~~~~~~~~e-~~~~l~ 89 (384)
+=.++||+. -.=+|+|...|.++. +|...|+|+.+|.. |.. ++.+.++.-..+++++.| .|..+-
T Consensus 3 ~~Ek~G~aEkTe~d~df~~le~~~d~~~~~~e~i~~~~~~---~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~ 79 (229)
T cd07594 3 TEEKLGTAEKTEYDAHFENLLQRADKTKVWTEKILKQTEA---VLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMI 79 (229)
T ss_pred chhhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 445677653 112899999999999 99999999999977 543 566666654455788766 233444
Q ss_pred HHHHHhhccCCCCCC---ChhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 016699 90 EDSRKYGSDNTCTSG---NTLSKAALSYGRARAQMEK-ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (384)
Q Consensus 90 ~~m~~~g~e~~~~~~---~~~g~al~~~g~a~~~l~~-~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~e 165 (384)
+.-...|.+.. -+ ..||.|..++|+++..... +..+|+.-+..-.-.-++....- -|-...+...||..|..
T Consensus 80 ~~g~~lg~~S~--~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLd~D~~k~r 155 (229)
T cd07594 80 EAGNDFGPGTA--YGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKE--RKLLENKRLDLDACKTR 155 (229)
T ss_pred HHHhhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44444444432 22 2588999999999988764 68888888876554466666553 56666778889999998
Q ss_pred HHH
Q 016699 166 AEA 168 (384)
Q Consensus 166 le~ 168 (384)
+..
T Consensus 156 ~~k 158 (229)
T cd07594 156 VKK 158 (229)
T ss_pred Hhh
Confidence 875
No 137
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.29 E-value=7.6 Score=36.85 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
|.|++.|+.++..+..+.+.|..-. .- ...+| -+..|..-..+++.. ...+.|..++..+-.....|+..
T Consensus 4 ~~G~~~l~~r~~~g~~~~~el~~f~----ke-Ra~iE~eYak~L~kLak~~~~~---~e~gsl~~aw~~i~~e~e~~a~~ 75 (239)
T cd07647 4 TTGFDTLLQRLKEGKKMCKELEDFL----KQ-RAKAEEDYGKALLKLSKSAGPG---DEIGTLKSSWDSLRKETENVANA 75 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhccCCC---CccchHHHHHHHHHHHHHHHHHH
Confidence 6678889988888888887776522 11 11122 122333333333311 13346888999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhc
Q 016699 125 RGNLLKALGTQVAEPLRAMVL 145 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~ 145 (384)
+..|...+... +..|..|..
T Consensus 76 H~~la~~L~~~-v~~l~~~~~ 95 (239)
T cd07647 76 HIQLAQSLREE-AEKLEEFRE 95 (239)
T ss_pred HHHHHHHHHHH-HHHHHHHHH
Confidence 99999999886 466766654
No 138
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=93.24 E-value=0.13 Score=41.46 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCCCCcccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699 329 ESDVELTLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 372 (384)
Q Consensus 329 ~~~~ELsf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l 372 (384)
.+.-.|.+.+||++.|+...+.+-|.++. .|+.|+||.+++-..
T Consensus 28 ~G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 28 WGGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp --TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CCcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 34568999999999999999999889998 999999999998543
No 139
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=93.06 E-value=5.3 Score=37.89 Aligned_cols=125 Identities=15% Similarity=0.218 Sum_probs=83.0
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhhhhh-------------hHHHHhhh--hcccccC----CCcccchhhHHHHHHH
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRAGKH-------------FQRDIVRG--VEGYIVT----GSKQVEIGTKLSEDSR 93 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~-------------~~~~i~r~--~e~~~~~----~~~~~e~~~~l~~~m~ 93 (384)
+|+|...|.+|. +|..+|+|+.+|...-. +..+|-+. ..+|..+ |...++.|.-||++..
T Consensus 6 d~~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~ 85 (223)
T cd07615 6 DDDFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEEST 85 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCCCh
Confidence 789999999999 99999999999987322 22244223 2345442 4555666555554332
Q ss_pred HhhccCCCCCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 94 KYGSDNTCTSGNTLSKAALSYGRARAQM-EKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 94 ~~g~e~~~~~~~~~g~al~~~g~a~~~l-~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
||.-+. .||.|.-++|+++..+ ..+..+|+.-+..-...-++....- -|-...+...||..+..+
T Consensus 86 -~G~aL~-----~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLd~D~~K~r~ 151 (223)
T cd07615 86 -FGNALL-----DVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHH--LKKLEGRRLDFDYKKKRQ 151 (223)
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcC
Confidence 444443 4788999999998765 4678888888876555556655443 455556777888877655
No 140
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.73 E-value=9.9 Score=36.64 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CTSGNTLSKAALSYGRARAQMEKER 125 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~-~~~~~~~g~al~~~g~a~~~l~~~~ 125 (384)
|.+++-||.+++.+....+.|..-. . .+..|-+.-+..|.+...-.. .+..++|..++..+-....+|+..+
T Consensus 4 ~~G~~~l~~r~k~g~~~~kel~~fl----k---eRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H 76 (261)
T cd07674 4 NAGFDVLYHNMKHGQISTKELADFV----R---ERAAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCH 76 (261)
T ss_pred CcChHHHHHHHHhHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888777777765433 1 111111122222222222111 1123368899999999999999999
Q ss_pred HHHHHHHhhhhchHHHHHhc
Q 016699 126 GNLLKALGTQVAEPLRAMVL 145 (384)
Q Consensus 126 ~~~~~~~~~~~l~PL~~~~~ 145 (384)
..|...+. ..+.|+..|..
T Consensus 77 ~~l~~~L~-~~~~~i~~~~~ 95 (261)
T cd07674 77 LELMRKLN-DLIKDINRYGD 95 (261)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 99999887 55577776644
No 141
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=92.32 E-value=6.3 Score=37.16 Aligned_cols=170 Identities=21% Similarity=0.227 Sum_probs=99.8
Q ss_pred HHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC-CCCCCChhHHHHHH----------HHHH
Q 016699 49 RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN-TCTSGNTLSKAALS----------YGRA 117 (384)
Q Consensus 49 ~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~-~~~~~~~~g~al~~----------~g~a 117 (384)
.|..|-..++.++.+.++|.+.++.|+..-.+..+. |.+- -..|.+.||.+++. +|.+
T Consensus 8 df~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~-----------g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~a 76 (215)
T cd07593 8 EFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPL-----------LDDKDKCLPVEALGLVMINHGEEFPQDSEYGSC 76 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----------ccccccCChHHHHHHHHHHHHhhCCCCChHHHH
Confidence 344555668888899999999999998752222221 1111 11245567777764 7788
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccCCCC
Q 016699 118 RAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRETPGN 197 (384)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~~~~ 197 (384)
....+.++..+.. +...|..+++.-.-. +|.....-.| +... .| |+ ....
T Consensus 77 L~~~G~a~~kia~-~q~~f~~~~~~~~l~-pL~~~l~~~k-------~i~k-----------~R---Kk-Le~r------ 126 (215)
T cd07593 77 LSKLGRAHCKIGT-LQEEFADRLSDTFLA-NIERSLAEMK-------EYHS-----------AR---KK-LESR------ 126 (215)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHH-------HHHH-----------HH---HH-HHHH------
Confidence 8899999988877 578888888864333 5655542111 2233 22 11 1111
Q ss_pred CchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 198 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD 263 (384)
Q Consensus 198 ~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL~ 263 (384)
-..+..+.+++...+..-..+..|...+....+. +.-.+...+..|.+.+.++..+....++
T Consensus 127 ---RLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfee-s~E~a~~~M~~i~~~e~e~~~~L~~lv~ 188 (215)
T cd07593 127 ---RLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEE-SSEDVEARMVAIKESEADQYRDLTDLLD 188 (215)
T ss_pred ---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1245666666655543323344445444444443 2344567888888887777777766643
No 142
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=92.11 E-value=10 Score=35.35 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc--CCChHHHH
Q 016699 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL--GAPLDDAR 153 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~--~~~lk~~~ 153 (384)
++|..+...|.-|.. ...+.|.+||...|++...|+....+--+.=-..|.+=|..|+- + -++++-
T Consensus 44 k~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~gll~-~~pdi~ 114 (199)
T cd07626 44 KIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYKGLLS-TFPDII 114 (199)
T ss_pred HHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHhHHH-hhhHHH
Confidence 677777777754441 24467999999999999999999888777776777776666543 2 256666
No 143
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=91.95 E-value=7.3 Score=36.92 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=84.8
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhhhh-------------hhHHHHhhhh--cccccC----CCcccchhhHHHHHHH
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRAGK-------------HFQRDIVRGV--EGYIVT----GSKQVEIGTKLSEDSR 93 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k-------------~~~~~i~r~~--e~~~~~----~~~~~e~~~~l~~~m~ 93 (384)
+|+|...|.++. +|...|+|+.+|..-- .+..+|-... .+|-.+ |-..++.|.-||++-
T Consensus 6 d~df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S- 84 (223)
T cd07592 6 DDEFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDS- 84 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCC-
Confidence 789999999999 9999999999998733 2223441111 124322 455556655555543
Q ss_pred HhhccCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 016699 94 KYGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (384)
Q Consensus 94 ~~g~e~~~~~~~~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele 167 (384)
.||.-+- .+|.|..++|++..... .+..+|+.-+..-...-++....- -|-...+...||..|..+.
T Consensus 85 ~~G~aL~-----~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~--RKkLe~rRLdyD~~k~k~~ 152 (223)
T cd07592 85 NFGQALV-----EVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH--RKKLEGRRLDYDYKKRKQG 152 (223)
T ss_pred hHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 3554443 58899999999987765 578888888886655555555553 5556667788998887653
No 144
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=91.85 E-value=9.6 Score=34.49 Aligned_cols=65 Identities=9% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHhhhhccC
Q 016699 117 ARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQAKVRET 194 (384)
Q Consensus 117 a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~~k~~e~ 194 (384)
+...++.....+ ..+...+...++..+-. |++......+.+..+++.++. .++|+-+.+.+....
T Consensus 93 ~l~~~~~~~~~i-~~~~~~~~~~~~~~vi~-pl~~~~~~~~~i~~~~kkr~~-----------~~ldyd~~~~k~~k~ 157 (229)
T PF03114_consen 93 ALEKFGEAMQEI-EEARKELESQIESTVID-PLKEFLKEFKEIKKLIKKREK-----------KRLDYDSARSKLEKL 157 (229)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 344455555544 44445556666665544 566666555556666666666 666666666664433
No 145
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.72 E-value=13 Score=35.87 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC---CCCCChhHHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~---~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
.+|+.|..-+..+..|.++|.+-.- .....-.|-+.+|-.-+-+|+.--. ..|..+...+...+=.....++..
T Consensus 5 Dqf~~~~k~~~~Gi~~l~~~~~F~k---eRa~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q 81 (252)
T cd07675 5 DQFDNLDKHTQWGIDFLERYAKFVK---ERLEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQ 81 (252)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666554321 1111122333455555566643221 112111223444555667778899
Q ss_pred HHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699 125 RGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
++.|..++..+++.||..+.. +++..|
T Consensus 82 ~e~~a~~l~~~v~~~l~~~~~--~l~~~r 108 (252)
T cd07675 82 REVVAEEMGHRVYGELMRYSH--DLKGER 108 (252)
T ss_pred HHHHHHHHHHHHhHHHHHHHH--HHHHHH
Confidence 999999999999999999886 577776
No 146
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=91.42 E-value=14 Score=35.73 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Q 016699 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRA 142 (384)
Q Consensus 105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~ 142 (384)
+++..++--|-.-...|+..+..+-..+....++|++.
T Consensus 60 GTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~ 97 (258)
T cd07681 60 GTLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA 97 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888889999999999999999999999977
No 147
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=91.01 E-value=5.9 Score=39.19 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=90.6
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
-+|++++..|..-++ ..-..|..+||+.|+.|++-.-..++.+.- .+.-|..|+.. -+-|.+-..|+|--..-+.
T Consensus 171 ~FGd~F~~i~vhEpQ---q~AsEAF~~Fgd~HR~ieK~g~~~~k~ikp-mlsDL~tYlnk-aiPDTrLTikkYlDvKfeY 245 (429)
T KOG3651|consen 171 EFGDIFCDIAVHEPQ---QTASEAFSSFGDKHRMIEKKGSESAKPIKP-MLSDLQTYLNK-AIPDTRLTIKKYLDVKFEY 245 (429)
T ss_pred HhhhhhhhhhccCcc---hhHHHHHHHHHHHHHHHHHhccchhhhhhH-HHHHHHHHHhc-cCCcchhhhHHhhhhhHHH
Confidence 568888888877653 235689999999999999988877776654 45668888888 4777775555564444333
Q ss_pred HHhhhhhccCCcccHHHHHHHhhhhccCCCCCch------------HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016699 167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDL------------ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES 234 (384)
Q Consensus 167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~------------~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~ 234 (384)
-+ |.-+ -|-.++...... .=++|.-.-=-+|++..+..|-..+..-|..+++
T Consensus 246 LS---------------YCLK-vKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~DVleKmELLdq 309 (429)
T KOG3651|consen 246 LS---------------YCLK-VKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDDVLEKMELLDQ 309 (429)
T ss_pred HH---------------HHHh-hhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33 3211 122222111100 0011111111122222222332333344433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 235 QQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 266 (384)
Q Consensus 235 qqq~~~l~~L~a~veAql~Yh~q~~~iL~qL~ 266 (384)
.--+=...+|..|++....||+.|..+|.+..
T Consensus 310 KHv~Di~~qL~~l~~tmak~~~~c~~~L~~~~ 341 (429)
T KOG3651|consen 310 KHVRDIAQQLAILAKTMAKCQQECAEILKERI 341 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21122256899999999999999999987754
No 148
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=90.85 E-value=16 Score=35.17 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=56.0
Q ss_pred HHHHHHhhhhhhhHHHHhhhhcc--cccCCCcccchhhHHHHHHHHhhccC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699 51 ERLYISTRAGKHFQRDIVRGVEG--YIVTGSKQVEIGTKLSEDSRKYGSDN-TCTSGNTLSKAALSYGRARAQMEKERGN 127 (384)
Q Consensus 51 e~l~~~~~~~k~~~~~i~r~~e~--~~~~~~~~~e~~~~l~~~m~~~g~e~-~~~~~~~~g~al~~~g~a~~~l~~~~~~ 127 (384)
+.+..+++.+..|.++|..-.-- -|...| +..|..-..+|..-. +....+.+..++..+-.-...++..+..
T Consensus 8 ~~~~kr~~~G~~~~~el~~f~kERa~IE~~Y-----ak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~ 82 (258)
T cd07655 8 KRTVKRIEDGHKLCDDLMKMVQERAEIEKAY-----AKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLS 82 (258)
T ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777666654311 011111 123333333432211 0012236888999999999999999999
Q ss_pred HHHHHhhhhchHHHHHh
Q 016699 128 LLKALGTQVAEPLRAMV 144 (384)
Q Consensus 128 ~~~~~~~~~l~PL~~~~ 144 (384)
+...+...+..||..+.
T Consensus 83 l~~~L~~~v~~~i~~~~ 99 (258)
T cd07655 83 IRDKLLNDVVEEVKTWQ 99 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998876
No 149
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.75 E-value=0.11 Score=51.48 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=31.4
Q ss_pred CCCcccCCCCEEEEEeecCCCeeEEEe---CCeeeEecC
Q 016699 331 DVELTLSVGDYVVVRKVTNNGWAEGEC---KGKAGWFPF 366 (384)
Q Consensus 331 ~~ELsf~~GdiI~V~~~~d~gW~~G~~---~G~~G~fP~ 366 (384)
...++|...|.|-|-++.+++||.|+. ++..||+|+
T Consensus 79 g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 79 GHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred CceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 335789999999999999999999987 667899997
No 150
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=90.38 E-value=0.42 Score=35.16 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=28.8
Q ss_pred ccCCCCEEEEEeecCCCeeEEEeC-CeeeEecCCCe
Q 016699 335 TLSVGDYVVVRKVTNNGWAEGECK-GKAGWFPFGYI 369 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~gW~~G~~~-G~~G~fP~~YV 369 (384)
.+..|+.+.|+...+.+|+..... |..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 466899999988765599999884 99999987765
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.67 E-value=0.34 Score=45.36 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEeecC-CCeeEEEe-CCeeeEecCCCeeec
Q 016699 335 TLSVGDYVVVRKVTN-NGWAEGEC-KGKAGWFPFGYIERR 372 (384)
Q Consensus 335 sf~~GdiI~V~~~~d-~gW~~G~~-~G~~G~fP~~YVe~l 372 (384)
++..|+.++|+...+ .||...+. +|+.|||+..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 467899999998765 68999986 899999999998653
No 152
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=88.96 E-value=22 Score=34.00 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=69.5
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
.+|..+.+++.|+-..+..-+..-..+.-.+.+.+...+..|...+.... ..++...++.|+.+.+..
T Consensus 80 ~isk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t------------~~eveK~Kk~Y~~~c~~~ 147 (237)
T cd07685 80 TLSQVLRKHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTT------------QQDIEKLKSQYRSLAKDS 147 (237)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 36777777777765222233333333444444455555555554444110 124445667777777777
Q ss_pred HHhhhhhccCCcccHHHHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 167 EAQLVISSSLKPSQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIA 246 (384)
Q Consensus 167 e~~~~~~~~l~~~rrld~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~qqq~~~l~~L~a 246 (384)
++ -| .+-.| .+ .+.+.+.+.+|+.+.....-.+.++=.-++..+....+..+.+.|-.
T Consensus 148 e~-----------AR----~K~ek---as----~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~ 205 (237)
T cd07685 148 AQ-----------AK----RKYQE---AS----KDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPG 205 (237)
T ss_pred HH-----------HH----HHHHh---cc----cchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHH
Confidence 77 33 11112 11 11245556666665543333333332222222222333344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016699 247 MVEAERTYHQRVLQILDQLEGE 268 (384)
Q Consensus 247 ~veAql~Yh~q~~~iL~qL~~e 268 (384)
+.+...+-+.....+|..+-.+
T Consensus 206 LLd~lQ~lnE~~v~~Ln~il~e 227 (237)
T cd07685 206 LLESLQSLHEEMVLILKEILQE 227 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444443
No 153
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=88.15 E-value=0.31 Score=51.62 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=42.4
Q ss_pred CcceeEeeccCCCCCC------CCcccCCCCEEEEEeec-CCCeeEEEe--CCeeeEecCCCeeeccCCC
Q 016699 316 GYFLGEVVHPYQAESD------VELTLSVGDYVVVRKVT-NNGWAEGEC--KGKAGWFPFGYIERRDRVL 376 (384)
Q Consensus 316 ~~~~a~alydy~a~~~------~ELsf~~GdiI~V~~~~-d~gW~~G~~--~G~~G~fP~~YVe~l~~~p 376 (384)
+.++-.++-.|.+..+ .-|.+.+||++.+..-. .+.||.|+. .+..||||++-|.....+|
T Consensus 603 GLpkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 603 GLPKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred CCcchhhhhccCCCCCCCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 3344455555554333 34778999999876653 567999998 5678999999988655444
No 154
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=87.94 E-value=26 Score=33.54 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=48.0
Q ss_pred hHHHHHHHHhhccCC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHH
Q 016699 86 TKLSEDSRKYGSDNT--CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMR 163 (384)
Q Consensus 86 ~~l~~~m~~~g~e~~--~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r 163 (384)
..|..-+.+|..-.. ....+....+...|=+--..|+..+..+...+....+..|..++.. . +..+|.|+..+
T Consensus 40 ~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~--~---~~~~k~~~~~~ 114 (234)
T cd07686 40 STLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKD--K---QQVKKSYIGVH 114 (234)
T ss_pred HHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--H---HHHHHHHHHHH
Confidence 345555555533211 0123444456666667777788888888888888888888777652 2 34456666666
Q ss_pred HHHHH
Q 016699 164 QEAEA 168 (384)
Q Consensus 164 ~ele~ 168 (384)
++++.
T Consensus 115 ~kl~~ 119 (234)
T cd07686 115 QQIEA 119 (234)
T ss_pred HHHHH
Confidence 66666
No 155
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=87.51 E-value=27 Score=33.28 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhc-c-cccCCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVE-G-YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e-~-~~~~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
|.||+-||.++..++.+.++|..-.- - -|...|.+ ...+|+... .-|. ..+.|..++-.+-.....|+..
T Consensus 4 ~~Gf~vl~~~~k~g~~~~~el~~fl~ERa~IEe~Yak--~L~klak~~-~~~~-----e~Gtl~~sw~~~~~e~E~~a~~ 75 (233)
T cd07649 4 VTGFEILLQKQLKGKQMQKEMAEFIRERIKIEEEYAK--NLSKLSQSS-LAAQ-----EEGTLGEAWAQVKKSLADEAEV 75 (233)
T ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhh-cCCC-----CCChHHHHHHHHHHHHHHHHHH
Confidence 56788888888888887777765431 1 00111111 111343211 1122 3347999999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..|...+...+..||+.|..+
T Consensus 76 H~~la~~L~~ev~~~l~~f~~~ 97 (233)
T cd07649 76 HLKFSSKLQSEVEKPLLNFREN 97 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999885
No 156
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=86.55 E-value=1.3 Score=32.04 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=27.8
Q ss_pred ccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCe
Q 016699 335 TLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYI 369 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YV 369 (384)
.+..|.++.|+. ...+|.+.+.+|..||++.+.|
T Consensus 20 ~l~~g~~v~v~~-~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 20 RLEPGVPVRVIE-CRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EECCCCEEEEEE-ccCCeEEEEECCeEEeEEeeec
Confidence 466788888874 4778999999999999998765
No 157
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.28 E-value=33 Score=33.06 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC--C--CCCChhHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT--C--TSGNTLSKAALSYGRARAQMEK 123 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~--~--~~~~~~g~al~~~g~a~~~l~~ 123 (384)
.+++.|..-+..+..|.++|..-.=- ....--|-+.+|..-+.+|..--. . .|...+=.|..-+=.-...++.
T Consensus 5 D~~~~l~k~~~~Gi~~~~~i~~f~kE---Ra~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~ 81 (253)
T cd07676 5 DQFDNLEKHTQWGIEVLEKYIKFVKE---RTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAG 81 (253)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence 34555665566666666555543310 011111122345555555543311 0 0111122233333344448899
Q ss_pred HHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699 124 ERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 124 ~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
.++.|-.++..++++||..++.. ++.-+
T Consensus 82 ~H~~~~~~L~~~v~~~l~~~~~~--~k~~r 109 (253)
T cd07676 82 QHEVISENLASQIIVELTRYVQE--LKQER 109 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 99999999999999999988873 44444
No 158
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=0.91 Score=46.27 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=43.4
Q ss_pred eeEeeccCCCCCCCCcccCCCCEEEEEeecCCCeeEEEe--CCeeeEecCCCeee
Q 016699 319 LGEVVHPYQAESDVELTLSVGDYVVVRKVTNNGWAEGEC--KGKAGWFPFGYIER 371 (384)
Q Consensus 319 ~a~alydy~a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--~G~~G~fP~~YVe~ 371 (384)
-..|+++..+....|+.+++||+|.|-.--=+|...|.+ .++.|+||+-=|+.
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 368999999999999999999999887655556667765 78999999966654
No 159
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=81.50 E-value=51 Score=31.50 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC--CCCCCChhHHHHHHHHHHHHHHHHH
Q 016699 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN--TCTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 47 ~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~--~~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
+.+++.|+.+++.++.+.+.|..-.= -+..|-+.-+..|.+...-. |....+.+-.++..+-.-...|+..
T Consensus 4 ~~Gy~~l~~r~~~g~~~~~el~~f~k-------ERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~ 76 (240)
T cd07672 4 TGGYDCIIQHLNDGRKNCKEFEDFLK-------ERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQS 76 (240)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 56788999999988888887766441 12222223333333322211 2123347889999999999999999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..|...+... +.||..|.+.
T Consensus 77 H~~la~~L~~~-~~~~~~f~~~ 97 (240)
T cd07672 77 HIQLAQTLRDE-AKKMEDFRER 97 (240)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999986 5588888553
No 160
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=81.09 E-value=50 Score=31.17 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccC---CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 016699 50 LERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSGNTLSKAALSYGRARAQMEKERG 126 (384)
Q Consensus 50 ~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~---~~~~~~~~g~al~~~g~a~~~l~~~~~ 126 (384)
.+=|..+++.+|.+.++|..-.= -+.+|-+.-+.-+.+..... +.+..+.+..+...+-..-..++..+.
T Consensus 7 ~~~l~~Rl~~~~~~~~el~~~~k-------ERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~ 79 (228)
T cd07650 7 TEILRIRLSQIKLVNTELADWLQ-------ERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHG 79 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777766666655431 11222222344444444332 111222445788888888899999999
Q ss_pred HHHHHHhhhhchHHHHHhcC
Q 016699 127 NLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 127 ~~~~~~~~~~l~PL~~~~~~ 146 (384)
.+...+...+..||+.|...
T Consensus 80 ~la~~l~~~ve~~l~~~~~~ 99 (228)
T cd07650 80 ELAQRIETDVEEPLRDFATS 99 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987
No 161
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=80.43 E-value=3 Score=41.87 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=48.2
Q ss_pred ceeEeeccCC--CCCCCCcccCCCCEEEEEeecCCCeeEEEeCCeeeEecCCCeeecc
Q 016699 318 FLGEVVHPYQ--AESDVELTLSVGDYVVVRKVTNNGWAEGECKGKAGWFPFGYIERRD 373 (384)
Q Consensus 318 ~~a~alydy~--a~~~~ELsf~~GdiI~V~~~~d~gW~~G~~~G~~G~fP~~YVe~l~ 373 (384)
..+++.-+|. +.+.++|-+..||+|.+++....|-|.|-++++.|-|+.-||..+.
T Consensus 137 ~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 137 GRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVIS 194 (361)
T ss_pred ccccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccc
Confidence 3456666665 5788899999999999999999999999999999999999998763
No 162
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=79.22 E-value=61 Score=31.01 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHhhhhcccccCCCcccchhhHHHHHHHHhhccCC-CCCCChhHHHHHHHHHHHHHHHHH
Q 016699 46 QHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT-CTSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 46 ~~~~~e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e~~~~l~~~m~~~g~e~~-~~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
.|.+++.|+.+++.++...+.+..-.= -+.+|-+.-|..+.+...... ....+++..++..+-.-...++..
T Consensus 3 ~~~G~~~l~~r~~~g~~~c~el~~f~k-------eRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~ 75 (242)
T cd07671 3 LNTGYEILLQRLLDGRKMCKDVEELLK-------QRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNS 75 (242)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 477889999999888888777665431 122222223333333332221 123346888898888888899999
Q ss_pred HHHHHHHHhhhhchHHHHHhcC
Q 016699 125 RGNLLKALGTQVAEPLRAMVLG 146 (384)
Q Consensus 125 ~~~~~~~~~~~~l~PL~~~~~~ 146 (384)
+..+...+... +.||..|.+.
T Consensus 76 H~~ia~~L~~~-~~~l~~f~~~ 96 (242)
T cd07671 76 HIQLAGMLREE-LKSLEEFRER 96 (242)
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 99999999988 6778888653
No 163
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=78.99 E-value=73 Score=31.83 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016699 237 QRLTLQRLIAMVEAERTYHQRVLQILDQLEGEMLSERQR 275 (384)
Q Consensus 237 q~~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~e~qr 275 (384)
|.-|+.+|.+-|..--+-|.-....|+.+.+++..+++.
T Consensus 195 qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRss 233 (426)
T KOG2008|consen 195 QKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSS 233 (426)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhh
Confidence 445677787777777777777888888888888876654
No 164
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=76.56 E-value=77 Score=30.75 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=52.7
Q ss_pred HHHHHHhhhhhhhHHHHhhhhcccccCCCcccc--hhhHHHHHHHHhhccCCC-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 016699 51 ERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVE--IGTKLSEDSRKYGSDNTC-TSGNTLSKAALSYGRARAQMEKERGN 127 (384)
Q Consensus 51 e~l~~~~~~~k~~~~~i~r~~e~~~~~~~~~~e--~~~~l~~~m~~~g~e~~~-~~~~~~g~al~~~g~a~~~l~~~~~~ 127 (384)
+.+..+++-++.|.++|..-.= - -..+| -+..|..-+.+|..-.+. ...+++=.+...|-..-..|+..+..
T Consensus 8 ~~~~kr~~~g~~~~~dl~~f~k----E-RA~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~ 82 (258)
T cd07680 8 KRTVKRIDDGHRLCNDLMNCVQ----E-RAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQE 82 (258)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777665431 0 01122 112334444444321110 12245667888888888889999999
Q ss_pred HHHHHhhhhchHHH
Q 016699 128 LLKALGTQVAEPLR 141 (384)
Q Consensus 128 ~~~~~~~~~l~PL~ 141 (384)
+...+.+..+++++
T Consensus 83 la~~L~~e~~e~~r 96 (258)
T cd07680 83 VKNNLLNEDLEKVK 96 (258)
T ss_pred HHHHHHHhHHHHHH
Confidence 99999999999995
No 165
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.68 E-value=1.4e+02 Score=31.29 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=45.5
Q ss_pred HHHHHHHhhccCCCCCCC-hhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhchHHHHHhcCCChHHHH
Q 016699 88 LSEDSRKYGSDNTCTSGN-TLSKAALSYGRARAQMEKERGNL-LKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 88 l~~~m~~~g~e~~~~~~~-~~g~al~~~g~a~~~l~~~~~~~-~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
+|......+...+ .. ++..++..+..+...+....+.+ ...-...+.++|+.|+.- +..++
T Consensus 314 ~g~~~~~l~~~~~---~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~~--~~~~k 376 (503)
T KOG2273|consen 314 LGKALAQLSALEG---ETDELSEALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIRY--LESVK 376 (503)
T ss_pred HHHHHHHHHHhhh---chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHH--HHHHH
Confidence 4444444444433 22 78999999999999999999999 888888999999998873 44444
No 166
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=70.34 E-value=4.9 Score=31.57 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=20.3
Q ss_pred CcccCCCCEEEEEeec------CCCeeEEEe
Q 016699 333 ELTLSVGDYVVVRKVT------NNGWAEGEC 357 (384)
Q Consensus 333 ELsf~~GdiI~V~~~~------d~gW~~G~~ 357 (384)
-|+++.||.+.|-... +.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 4789999999887653 678999975
No 167
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=69.62 E-value=6.3 Score=36.90 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEeecCC-CeeEEEe-CCeeeEecCCCeee
Q 016699 335 TLSVGDYVVVRKVTNN-GWAEGEC-KGKAGWFPFGYIER 371 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~-gW~~G~~-~G~~G~fP~~YVe~ 371 (384)
+++.||.+.|+..... ||..... +|..||||..++..
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 6889999999988644 8999988 89999999988764
No 168
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=68.68 E-value=1.2e+02 Score=29.54 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHh---------------------cCCChHHHHHHHHHHHHHHHHHHH
Q 016699 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV---------------------LGAPLDDARHLAQRYDRMRQEAEA 168 (384)
Q Consensus 110 al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~---------------------~~~~lk~~~~~~k~y~~~r~ele~ 168 (384)
+.-.+=+.-.+++..+..+..++.+++.+|++..- .. -+.+...-+|.|+...+..++
T Consensus 71 ~W~~~L~~Te~~A~~~~~~ae~l~~~~a~~~k~~r~~ke~~~Kk~~e~~~~lq~El~~-~~~EL~KaKK~Y~~~cq~~e~ 149 (260)
T cd07677 71 VWKSFLEGTMQVAQSRINICENYKNLISEPARTVRLYKEQQLKRCVDQLTKIQAELQE-TVKDLAKGKKKYFETEQMAHA 149 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHH
Confidence 34444455556666677777777777777664222 11 244455556678888777777
Q ss_pred hhhhhccCCcccHH--HHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHH
Q 016699 169 QLVISSSLKPSQAI--EVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQ 242 (384)
Q Consensus 169 ~~~~~~~l~~~rrl--d~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~----~L~~e~~~~~~~ve~qqq~~~l~ 242 (384)
.|- |.. .|.+.. .+-.-..++.++.|+.+-...|. .--+|=.-.+..+.+++.+.+++
T Consensus 150 -----------~ReK~~~e---~K~~~s--~~qs~~slqK~~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa~~~kYY~~ 213 (260)
T cd07677 150 -----------VREKADIE---AKSKLS--LFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQT 213 (260)
T ss_pred -----------HHHHHHHH---Hhcccc--cccccchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Confidence 552 110 011111 11111123344445444444433 11122233344566777888999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH
Q 016699 243 RLIAMVEA-ERTYHQRVLQILDQLEG 267 (384)
Q Consensus 243 ~L~a~veA-ql~Yh~q~~~iL~qL~~ 267 (384)
+|..+++. -..||.+..+.|.-|..
T Consensus 214 DLp~l~~~~d~~~~~~~~~~l~~~~~ 239 (260)
T cd07677 214 DLVNIMKALDGNVYDHLKDYLMAFSR 239 (260)
T ss_pred cHHHHHHHhcchHHHHHHHHHHHHhH
Confidence 99999997 58899999888776654
No 169
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=68.38 E-value=65 Score=29.85 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHh
Q 016699 109 KAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSKRQ 188 (384)
Q Consensus 109 ~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kkr~ 188 (384)
..+..+.+-...+++.+..+... +++++..+-. |++++...-+...++=+.-+. +++|+.+.+
T Consensus 68 ~~~~~~~~y~~~~~~l~~~~~~~-----l~~i~~~V~~-P~~~~~~~~~~i~k~IkKR~~-----------k~lDyd~~~ 130 (216)
T cd07599 68 STLARLSRYVKALEELKKELLEE-----LEFFEERVIL-PAKELKKYIKKIRKTIKKRDH-----------KKLDYDKLQ 130 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHH
Confidence 35556666666666655444433 5688888887 898888555555555555555 667886555
Q ss_pred hhh
Q 016699 189 AKV 191 (384)
Q Consensus 189 ~k~ 191 (384)
.|.
T Consensus 131 ~k~ 133 (216)
T cd07599 131 NKL 133 (216)
T ss_pred HHH
Confidence 553
No 170
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=67.41 E-value=1.1e+02 Score=28.87 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH
Q 016699 104 GNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (384)
Q Consensus 104 ~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~ 153 (384)
.+.|..++..+=.....|+..+..|...+. ++.+||..+... ++..|
T Consensus 60 ~gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~~--~e~~R 106 (234)
T cd07652 60 QGSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAKT--VEKSR 106 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHH
Confidence 346999999999999999999999999996 799999988773 66666
No 171
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=65.44 E-value=7.5 Score=40.91 Aligned_cols=38 Identities=26% Similarity=0.532 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEeecCCCeeEEEe-CCeeeEecCCCeeec
Q 016699 335 TLSVGDYVVVRKVTNNGWAEGEC-KGKAGWFPFGYIERR 372 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~gW~~G~~-~G~~G~fP~~YVe~l 372 (384)
++..|+.|.|+...+.||+.-.. +|+.|||-..||..-
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 67899999997656779999999 599999999998753
No 172
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=65.17 E-value=2.9e+02 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhccc
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGY 74 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~ 74 (384)
..-|+|.+.+++++.|-++|...+|-+
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V 1568 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDV 1568 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 356789999999999999999888864
No 173
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=63.83 E-value=1.1e+02 Score=27.17 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHH
Q 016699 139 PLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVS 185 (384)
Q Consensus 139 PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~k 185 (384)
-|+.+|+..+|-+++ -++-.-.-+|+++.. |.++|||..+-..+
T Consensus 54 eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~---l~~sl~p~dqk~a~ 98 (142)
T TIGR03042 54 ELASLVAKEDWVFTRNLIHGPMGEVRREMTY---LNQSLLPKDQKEAL 98 (142)
T ss_pred HHHHHHhhcchHHHHHHHhccHHHHHHHHHH---HHHccCHHhHHHHH
Confidence 378888888999999 666666778999988 88889988884443
No 174
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=63.82 E-value=1.4e+02 Score=28.59 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.2
Q ss_pred HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKE 124 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~ 124 (384)
++|..+..-|.-|.. .....|-.|+...|++...|+..
T Consensus 81 kiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~~Ig~l 121 (237)
T PF10456_consen 81 KIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYEEIGDL 121 (237)
T ss_dssp HHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 666666655554442 22467889999999999999876
No 175
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=61.23 E-value=1.5e+02 Score=27.94 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH---hcCCChHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAM---VLGAPLDDARHLAQ 157 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~---~~~~~lk~~~~~~k 157 (384)
++|..+..-+.-|.. ...+.|-.|+...|++..-|++.-.+=-+.=-..+++=|..| |.+ +.||.+..|
T Consensus 52 kiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~--fPDii~v~K 126 (207)
T cd07669 52 KLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSN--FPDIIHLQK 126 (207)
T ss_pred HHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhCcccC--CccHHHHHH
Confidence 566655555554431 122458889999999999998876554444444444444443 223 556665544
No 176
>PLN02956 PSII-Q subunit
Probab=59.95 E-value=68 Score=29.57 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHhcCCChHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHHHH
Q 016699 139 PLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEVSK 186 (384)
Q Consensus 139 PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~kk 186 (384)
-|+.||+..+|.+++ -++..-.-+|+++.. |.++|||+.|-++++
T Consensus 98 ~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~---Ii~slpp~Drk~a~~ 143 (185)
T PLN02956 98 RVKALIESESWKEAQKALRRSASNLKQDLYA---IIQAKPGKDRPQLRR 143 (185)
T ss_pred HHHHHhhhccHHHHHHHHHccHHHHHHHHHH---HHHhcCHhHhHHHHH
Confidence 367788777999999 565555668999988 888999998855543
No 177
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=57.90 E-value=19 Score=26.48 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=22.6
Q ss_pred ccCCCCEEEEEeec-CCCeeEEEeCCeeeEecC
Q 016699 335 TLSVGDYVVVRKVT-NNGWAEGECKGKAGWFPF 366 (384)
Q Consensus 335 sf~~GdiI~V~~~~-d~gW~~G~~~G~~G~fP~ 366 (384)
.+..|+-|.|++.. |..|...+...-.|||++
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 46788999999886 556999999999999974
No 178
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.63 E-value=35 Score=32.30 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 016699 2 EAIRKQATKLREQVARQ 18 (384)
Q Consensus 2 ~~~~~~~~~~~~~~a~~ 18 (384)
|+|||||-+|-.|.--.
T Consensus 8 e~LRkqArslE~~ld~k 24 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSK 24 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999999887655
No 179
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=54.38 E-value=2.2e+02 Score=27.89 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=42.6
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRY 159 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y 159 (384)
..+..+..+|.. .|.+++..+-++|...-.|++.+..|...+.+.=+. ||.||.+-...
T Consensus 82 ~~A~~L~~WG~~----edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~----------LK~IR~~E~sl 140 (271)
T PF13805_consen 82 AAAKQLSEWGEQ----EDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIH----------LKSIRNREESL 140 (271)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 357777778866 345799999999999999999999998886554332 66666444433
No 180
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=53.67 E-value=40 Score=32.03 Aligned_cols=125 Identities=13% Similarity=0.248 Sum_probs=80.5
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhh---------hhhhHH-HHhh-----hhcccccC----CCcccchhhHHHHHHH
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRA---------GKHFQR-DIVR-----GVEGYIVT----GSKQVEIGTKLSEDSR 93 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~~~~-~i~r-----~~e~~~~~----~~~~~e~~~~l~~~m~ 93 (384)
.|+|...|..+- .+...++|+..|.. +|-|.= .+.| ...+|..+ |...++.|+-||++..
T Consensus 6 d~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~dS~ 85 (223)
T cd07614 6 DDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDESN 85 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCCCh
Confidence 567777777766 88888999888764 233332 2233 44555554 4556666555554332
Q ss_pred HhhccCCCCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 94 KYGSDNTCTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 94 ~~g~e~~~~~~~~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
||.-+- .||.|..++|+++.... .+..+|+.-+..-.=.-++....- -|-...+...||..|..+
T Consensus 86 -~G~aL~-----~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~--RKkLe~rRLdyD~~K~r~ 151 (223)
T cd07614 86 -FGDALL-----DAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH--LKKLEGRRLDFDYKKKRQ 151 (223)
T ss_pred -HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcC
Confidence 444443 57889999999987654 577788887766543555555543 566667778899887765
No 181
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=53.45 E-value=17 Score=26.63 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred ccCCCCEEEEEeecCCCeeEEEe
Q 016699 335 TLSVGDYVVVRKVTNNGWAEGEC 357 (384)
Q Consensus 335 sf~~GdiI~V~~~~d~gW~~G~~ 357 (384)
.|..|+.|.+....+++||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 47899999999877889999976
No 182
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=52.61 E-value=2e+02 Score=31.00 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=50.2
Q ss_pred HHHhcCCChHHHH---HHHHHHHHHHHHHHHhhhhhccCCcccHH-HHHHHhhhhccCCCCCchHHhHHHHHHHHHHHHH
Q 016699 141 RAMVLGAPLDDAR---HLAQRYDRMRQEAEAQLVISSSLKPSQAI-EVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS 216 (384)
Q Consensus 141 ~~~~~~~~lk~~~---~~~k~y~~~r~ele~~~~~~~~l~~~rrl-d~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~ 216 (384)
+.++++-+|++.+ +..+.|...++.... ....||....+ .|++|-.+.+.. .-.+..++..+.+++++++.
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~---~~~~Lp~~~~~~~yk~~v~~i~~~--~ik~p~~i~~~~~e~d~lk~ 226 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKK---RKKDLPNKQDLEEYKKRLEAIKKK--DIKNPLELQKIKEEFDKLKK 226 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHH
Confidence 4455555665554 666667777777776 55678866666 446666555543 33456688999999998887
Q ss_pred HHHHh
Q 016699 217 NMAIL 221 (384)
Q Consensus 217 ~~~~L 221 (384)
.+...
T Consensus 227 e~~~~ 231 (555)
T TIGR03545 227 EGKAD 231 (555)
T ss_pred HHHHH
Confidence 76554
No 183
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=52.28 E-value=33 Score=32.51 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCCCC--CcccccchHHHh-hhHHHHHHHHHhhh---------hhh-hHHHHhhhhcccccCCCcccchhh
Q 016699 20 QAVFKQFGGGGYGG--SDNVVTDEAELH-QHQRLERLYISTRA---------GKH-FQRDIVRGVEGYIVTGSKQVEIGT 86 (384)
Q Consensus 20 q~~~~~~~~~~~~~--~~~~~~~e~e~~-~~~~~e~l~~~~~~---------~k~-~~~~i~r~~e~~~~~~~~~~e~~~ 86 (384)
|.|-.++||+. |. +|+|...|.... .+.-.++|...|.. +|. ++++|-+.+-+. +.+.--.|+
T Consensus 1 Q~~~EkiG~AE-~Teld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~---~~~~~~Lg~ 76 (220)
T cd07617 1 QFTEEKLGQAE-KTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSR---VTNAELLGQ 76 (220)
T ss_pred CcchhhccCcc-CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCC---CChHHHHHH
Confidence 34556788654 22 788887887777 88888999887653 122 234555544332 333333444
Q ss_pred HHHHHHHHhhccCCCCCC---ChhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTSG---NTLSKAALSYGRARAQ-MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~---~~~g~al~~~g~a~~~-l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~ 162 (384)
-+-++-..+|.+.+ -| ..+|.|.-++|++... ...+..+|+.-+..-.-.-|+.... ..|-...+...||..
T Consensus 77 ~M~~~g~~~g~~s~--~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k--~RKkLe~rRLd~D~~ 152 (220)
T cd07617 77 YMTEAANDFGPGTP--YGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISK--ERRLLQNRRLDLDAC 152 (220)
T ss_pred HHHHHHHhcCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44444445554443 22 2488999999999886 5677888888887655445655544 255555677788888
Q ss_pred HHHHHH
Q 016699 163 RQEAEA 168 (384)
Q Consensus 163 r~ele~ 168 (384)
+..+..
T Consensus 153 K~r~~k 158 (220)
T cd07617 153 KARLKK 158 (220)
T ss_pred HHHHhc
Confidence 877754
No 184
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.65 E-value=2.2e+02 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016699 240 TLQRLIAMVEAERTYHQR 257 (384)
Q Consensus 240 ~l~~L~a~veAql~Yh~q 257 (384)
++-+|.+....+-.||..
T Consensus 206 Yll~l~~aN~~~~~yy~~ 223 (241)
T cd07656 206 YLLNLAAANATIHKYFVQ 223 (241)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355555555555544444
No 185
>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of uncharacterized fungal proteins containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and an Arf GTPase Activating Protein (GAP) domain. These proteins may play roles in Arf-mediated functions involving membrane dynamics. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.73 E-value=2.1e+02 Score=26.58 Aligned_cols=121 Identities=10% Similarity=0.071 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHH-HHHhhhh
Q 016699 114 YGRARAQMEKERGNLLKALGTQVAEPLRAMVL-GAPLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIEV-SKRQAKV 191 (384)
Q Consensus 114 ~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~-~~~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld~-kkr~~k~ 191 (384)
+-...+.+.......+..+...+++|+..+-. . |+|.+...+|.|+.-=++.-+.| . -+ .+++++.
T Consensus 60 f~~~~~~~~~~~~~~~~~lq~~~iep~~~~y~~~-dik~~~~kkK~FEeeSKdYYs~l---------~--kYLsn~~~~k 127 (192)
T cd07608 60 FDPFLLNLAFFLRDVCQDLQLKKIEPLLKIYSIN-DIKELSDKKKDFEEESKDYYSWL---------S--KYLSNESDKK 127 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc-hHHHHHHHhhhHHHHhHHHHHHH---------H--HHhccccccc
Confidence 45566677777777778888999999999888 6 99999977775544433333300 0 00 1232121
Q ss_pred ccCCCCCchHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 192 RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERTYHQRVLQ 260 (384)
Q Consensus 192 ~e~~~~~~~~~kl~~ae~k~~e~~~~~~~L~~e~~~~~~~ve~-qqq~~~l~~L~a~veAql~Yh~q~~~ 260 (384)
+.+.|+..-+-.||=.+=. =...|.++-. +-.+-.++.|..|+..+-..|.....
T Consensus 128 -------~~DSK~l~KRk~FEL~RFD-------Y~~~mqdl~ggr~~qell~~L~kf~~~q~~~~~~~~~ 183 (192)
T cd07608 128 -------RPDSKLLAKRKTFELSRFD-------YLNYLQDLHGGRKEQELLSILTKFINQQYDSIALTSN 183 (192)
T ss_pred -------CcchHHHHHHHHHHHHHhh-------HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHhHhh
Confidence 2345888887777776644 2222332211 11123478888888886555544433
No 186
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=47.97 E-value=1.2e+02 Score=34.02 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCCCCcccccchHHHhhhHHHHHHHHHhhhhh---hhHHHHhhhhccccc
Q 016699 21 AVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGK---HFQRDIVRGVEGYIV 76 (384)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~e~l~~~~~~~k---~~~~~i~r~~e~~~~ 76 (384)
.-++.||-+|+| .+.| -|+||..|-..++ .+.-.|+|++-.++.
T Consensus 175 Swvn~Fgvegl~----ll~~--------~Lkrl~dsk~~~~~~~k~~~eiIrClka~mN 221 (1102)
T KOG1924|consen 175 SWVNKFGVEGLG----LLLD--------VLKRLRDSKVGSKLDIKNLQEIIRCLKAFMN 221 (1102)
T ss_pred HHHHHhhhhhHH----HHHH--------HHHHHHhhhhhhhhHHHHHHHHHHHHHHHhc
Confidence 446788866663 2222 2446665555444 455567777776544
No 187
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=42.40 E-value=60 Score=25.11 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhccccc--CCCcccchhhHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 016699 48 QRLERLYISTRAGKHFQRDIVRGVEGYIV--TGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKER 125 (384)
Q Consensus 48 ~~~e~l~~~~~~~k~~~~~i~r~~e~~~~--~~~~~~e~~~~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~ 125 (384)
.+++.|+...+....+.+.|..-..--.. ..|.. ...+|+.-..+...... ..+.+..++..+-+....++..+
T Consensus 9 ~g~~~l~~~~~~~~~~~~~l~~~~keRa~lE~~Yak--~L~kl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~a~~h 84 (91)
T PF00611_consen 9 DGFEVLFKRLKQGIKLLEELASFFKERASLEEEYAK--SLQKLAKKFKKKMKSSQ--EYGTLKNAWDSLLEETEQIAEQH 84 (91)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSS--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccccCCC--CccHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888777777766654432111 11111 11133333332222222 34678999999999999999999
Q ss_pred HHHHHHH
Q 016699 126 GNLLKAL 132 (384)
Q Consensus 126 ~~~~~~~ 132 (384)
..|..++
T Consensus 85 ~~~a~~L 91 (91)
T PF00611_consen 85 SKLAENL 91 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 8887653
No 188
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.17 E-value=3.5e+02 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhc---hHHHHHhcC
Q 016699 124 ERGNLLKALGTQVA---EPLRAMVLG 146 (384)
Q Consensus 124 ~~~~~~~~~~~~~l---~PL~~~~~~ 146 (384)
.|..+.......|+ +-|+.|.+|
T Consensus 17 ywk~l~~~ykq~f~~~reEl~EFQeg 42 (333)
T KOG1853|consen 17 YWKLLHHEYKQHFLQMREELNEFQEG 42 (333)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555554 345666666
No 189
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=41.10 E-value=6 Score=42.51 Aligned_cols=53 Identities=25% Similarity=0.203 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHH
Q 016699 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (384)
Q Consensus 107 ~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~ 160 (384)
+|+++.-+|.+..++...-..+..........||+.++++ .+.+++...|+|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~~~~~~~~e~~~~~pl~~~~e~-~l~~~~~~ek~~~ 54 (577)
T KOG4270|consen 2 LQKALSGCGSAENQAATELIQKELFVEIKVVFPLRKIIEV-ELPNIRKEEKNLQ 54 (577)
T ss_pred chhhcccCcchhhhhhhccccceeeccccccCcccchhhh-hhhHHHHHHHHHH
Confidence 4678888888999998888888888888999999999999 8999995555443
No 190
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=38.37 E-value=3.5e+02 Score=25.53 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=38.8
Q ss_pred HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH---hcCCChHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAM---VLGAPLDDARHLAQ 157 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~---~~~~~lk~~~~~~k 157 (384)
++|+.+..-+.-|.. ...+.|..|+...|.+..-|+..-.+=-+.=-..|++-|..| |.+ +.||-+..|
T Consensus 52 kiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~--fPDIi~v~K 126 (210)
T cd07668 52 KIGKALQSLATVFSTSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMETNHEYKGFLGC--FPDIIGAHK 126 (210)
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCcccc--CccHHHHHH
Confidence 556655555444431 223468889999999999888765544443333344444433 223 456664443
No 191
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=36.09 E-value=4.2e+02 Score=25.81 Aligned_cols=18 Identities=0% Similarity=0.023 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016699 242 QRLIAMVEAERTYHQRVL 259 (384)
Q Consensus 242 ~~L~a~veAql~Yh~q~~ 259 (384)
.+++.|....-+||.++.
T Consensus 292 aqf~dfsskyg~f~~~se 309 (311)
T PF04642_consen 292 AQFHDFSSKYGNFFKESE 309 (311)
T ss_pred HHHHHhHHhhhhhhhhcc
Confidence 388888888888887754
No 192
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=33.66 E-value=2.8e+02 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=18.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHH
Q 016699 201 ALKLDAAEVKLHDLKSNMAILGKEAA 226 (384)
Q Consensus 201 ~~kl~~ae~k~~e~~~~~~~L~~e~~ 226 (384)
+.+-..||-||-+.....++|..+-.
T Consensus 430 EeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 430 EEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 44678888888888877666644433
No 193
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.96 E-value=8.3e+02 Score=28.30 Aligned_cols=59 Identities=32% Similarity=0.433 Sum_probs=35.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHhhhhhccCCcccHHHH--HHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHH-HhHHH
Q 016699 149 LDDAR-HLAQRYDRMRQEAEAQLVISSSLKPSQAIEV--SKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMA-ILGKE 224 (384)
Q Consensus 149 lk~~~-~~~k~y~~~r~ele~~~~~~~~l~~~rrld~--kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~-~L~~e 224 (384)
|+|.. +-+...+++.+++|. ++-++ -+|++.. ...++..+|.++.+.++..+ .||.|
T Consensus 387 LRDlsA~ek~d~qK~~kelE~-----------k~sE~~eL~r~kE~--------Lsr~~d~aEs~iadlkEQVDAAlGAE 447 (1243)
T KOG0971|consen 387 LRDLSASEKQDHQKLQKELEK-----------KNSELEELRRQKER--------LSRELDQAESTIADLKEQVDAALGAE 447 (1243)
T ss_pred HHhcchHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 45555 556666777777777 66433 2222210 11278888888888887643 56555
Q ss_pred HH
Q 016699 225 AA 226 (384)
Q Consensus 225 ~~ 226 (384)
+.
T Consensus 448 ~M 449 (1243)
T KOG0971|consen 448 EM 449 (1243)
T ss_pred HH
Confidence 44
No 194
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=32.84 E-value=4.7e+02 Score=25.43 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 016699 241 LQRLIAMVEAERTYHQRVLQ----ILDQLEGEML 270 (384)
Q Consensus 241 l~~L~a~veAql~Yh~q~~~----iL~qL~~eL~ 270 (384)
-.||.-|-++.+++|..+.- -+..+..+|.
T Consensus 221 ~eRi~F~K~~l~~~~~~l~i~~~~~~~~i~~~L~ 254 (258)
T cd07679 221 EKRLRFFREVLLEVQKHLDLSNVASYKNIYRELE 254 (258)
T ss_pred HHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHH
Confidence 45777777788888876521 2444555554
No 195
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=31.53 E-value=42 Score=18.84 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHH
Q 016699 2 EAIRKQATKLRE 13 (384)
Q Consensus 2 ~~~~~~~~~~~~ 13 (384)
|+|||-+|.++.
T Consensus 4 d~~rKivs~iKN 15 (17)
T PF08103_consen 4 DAIRKIVSVIKN 15 (17)
T ss_pred HHHHHHHHHHHh
Confidence 789999998864
No 196
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=30.91 E-value=4.8e+02 Score=24.95 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=66.8
Q ss_pred CcccccchHHHh-hhHHHHHHHHHhhhhhhhH------HHHhhhhcccccCCCcccchhh------HHHHHHHHhhccCC
Q 016699 34 SDNVVTDEAELH-QHQRLERLYISTRAGKHFQ------RDIVRGVEGYIVTGSKQVEIGT------KLSEDSRKYGSDNT 100 (384)
Q Consensus 34 ~~~~~~~e~e~~-~~~~~e~l~~~~~~~k~~~------~~i~r~~e~~~~~~~~~~e~~~------~l~~~m~~~g~e~~ 100 (384)
+|++...|.+|- .+.-+++++..|...-..+ +++.+..++.+ |....+.+. .||.++++
T Consensus 14 ~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~L--g~~M~~~g~~l~~~s~lg~~L~~------ 85 (244)
T cd07595 14 SDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGL--AQSMLESSKELPDDSLLGKVLKL------ 85 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHH--HHHHHHHHHhcCCCChHHHHHHH------
Confidence 778888888877 6667777776543221111 12222222211 222333332 34444443
Q ss_pred CCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 016699 101 CTSGNTLSKAALSYGRARAQME-KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168 (384)
Q Consensus 101 ~~~~~~~g~al~~~g~a~~~l~-~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~ 168 (384)
||.+.-++|++..... .+..+|+..+..-.=.-+.+.... -|....+...||..|..+..
T Consensus 86 ------~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~--RKkLe~~RLd~D~~k~r~~k 146 (244)
T cd07595 86 ------CGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQ--KKRLSKLVLDMDSARSRYNA 146 (244)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHh
Confidence 6677778888876655 466677766654432344444443 45555677789999988875
No 197
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.26 E-value=4.1e+02 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 016699 114 YGRARAQMEKERGNLLKALGT 134 (384)
Q Consensus 114 ~g~a~~~l~~~~~~~~~~~~~ 134 (384)
++.+...++..-..+......
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~ 82 (218)
T cd07596 62 LGEALSKLGKAAEELSSLSEA 82 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 198
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.89 E-value=5e+02 Score=24.45 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHhhccCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH---hcCCChHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAM---VLGAPLDDARHLAQ 157 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~---~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~---~~~~~lk~~~~~~k 157 (384)
++|+.+...+.-|.. ...+.|..|+...|.+..-|++.-.+--+.=-..|++-|..| |.+ +.||.+..|
T Consensus 52 kiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~--fPDii~v~K 126 (207)
T cd07670 52 KVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAYEAIGELFAEQPRQDLDPVMDLLALYQGHLAN--FPDIIHVQK 126 (207)
T ss_pred HHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhCcccc--CCchHHHhH
Confidence 455555544444431 122468889999999999888765443333333333333332 222 456664443
No 199
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=28.62 E-value=45 Score=33.82 Aligned_cols=43 Identities=30% Similarity=0.552 Sum_probs=31.6
Q ss_pred CCCCCcccCCCCEEEEEeecCCCeeEEEe--------CC---eeeEecCCC-eeec
Q 016699 329 ESDVELTLSVGDYVVVRKVTNNGWAEGEC--------KG---KAGWFPFGY-IERR 372 (384)
Q Consensus 329 ~~~~ELsf~~GdiI~V~~~~d~gW~~G~~--------~G---~~G~fP~~Y-Ve~l 372 (384)
.++.-|+|.+||.|.+... -.+|..|+. ++ -+||||.++ ++..
T Consensus 329 ~ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~ 383 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKC 383 (414)
T ss_pred CCCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhccccccccccccc
Confidence 4566799999999877664 578999832 12 469999988 6554
No 200
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=26.62 E-value=99 Score=22.92 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=26.3
Q ss_pred cCCCCEEE--EEeecCCCeeEEEeCCeeeEecCCCeee
Q 016699 336 LSVGDYVV--VRKVTNNGWAEGECKGKAGWFPFGYIER 371 (384)
Q Consensus 336 f~~GdiI~--V~~~~d~gW~~G~~~G~~G~fP~~YVe~ 371 (384)
+..|+++. |....+.|+|---.+|..|++|.+.+..
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~ 39 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSD 39 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcC
Confidence 56788877 6666777766544469999999876653
No 201
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=25.22 E-value=3.2e+02 Score=27.43 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 016699 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEA 168 (384)
Q Consensus 105 ~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~ele~ 168 (384)
..|.++.-+++++.-.+-....++....-..+--|-|.=++- =.+.+.+++++-++++++|..
T Consensus 252 ~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe-~~krL~ELrR~vr~L~k~l~~ 314 (320)
T TIGR01834 252 EENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDE-AHQRIQQLRREVKSLKKRLGD 314 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888888888888877777765553 133333444444555554444
No 202
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.79 E-value=5.8e+02 Score=23.89 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHH-HHHHHHHHHHHHHHH
Q 016699 114 YGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEA 168 (384)
Q Consensus 114 ~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~-~~~k~y~~~r~ele~ 168 (384)
|-.|..-..+.++.|...+.. +.-|-+|-.| ||+..- .+...|+..+...+.
T Consensus 30 Ve~Ardsq~eaqeQF~sALe~--f~sl~~~~gg-dLe~~Y~~ln~~ye~s~~~A~~ 82 (201)
T PF11172_consen 30 VEDARDSQQEAQEQFKSALEQ--FKSLVNFDGG-DLEDKYNALNDEYESSEDAAEE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHhhCCCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666554433 3444555556 887777 666667666655554
No 203
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.55 E-value=8.5e+02 Score=25.72 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=46.3
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEee-cCCCeeEEEeCCeeeEecCCCee
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV-TNNGWAEGECKGKAGWFPFGYIE 370 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~-~d~gW~~G~~~G~~G~fP~~YVe 370 (384)
..+.++++|||.+.+.++|+|..||+|.|++- +.+.||+|++.|..|-+|-+|+.
T Consensus 399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred CccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 34578999999999999999999999999986 35679999998877777776664
No 204
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=24.11 E-value=5.6e+02 Score=24.17 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 016699 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (384)
Q Consensus 87 ~l~~~m~~~g~e~~~~~~~~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~~lk~~~~~~k~y~~~r~el 166 (384)
.|..-+.+|..-.. .++...|. +..+...|=..-+.+ ...+..|..+|..+.. ++..+.+..++.|+.+
T Consensus 41 ~L~KLak~~~~~~~-~~~~~~gs----~~~a~~~il~~~e~l-A~~h~~~a~~L~~~~~-----eL~~l~~~~e~~RK~~ 109 (234)
T cd07652 41 GLKKLARTTLDTYK-RPDHKQGS----FSNAYHSSLEFHEKL-ADNGLRFAKALNEMSD-----ELSSLAKTVEKSRKSI 109 (234)
T ss_pred HHHHHHHHHHhhcc-CCCCCCCc----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 45544455544432 24555553 344555554444433 4458888888876544 2334445455555554
Q ss_pred HH
Q 016699 167 EA 168 (384)
Q Consensus 167 e~ 168 (384)
..
T Consensus 110 ke 111 (234)
T cd07652 110 KE 111 (234)
T ss_pred HH
Confidence 44
No 205
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=22.34 E-value=82 Score=33.93 Aligned_cols=35 Identities=23% Similarity=0.542 Sum_probs=28.6
Q ss_pred CCCEEEEEee-----cCCCeeEEEe-CCeeeEecCCCeeec
Q 016699 338 VGDYVVVRKV-----TNNGWAEGEC-KGKAGWFPFGYIERR 372 (384)
Q Consensus 338 ~GdiI~V~~~-----~d~gW~~G~~-~G~~G~fP~~YVe~l 372 (384)
=||+++|... .+.+|..... +|..||+-..||+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (549)
T PRK13545 374 FGDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPF 414 (549)
T ss_pred cCceEEEcccccccccCcceEEEEecCCccceeeeeeeeec
Confidence 3788888765 3558999888 999999999999875
No 206
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=22.03 E-value=1.3e+02 Score=32.92 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=38.4
Q ss_pred CcceeEeeccCCCCCCCCcccCCCCEEEEEee---cCC-CeeEEEeCC-----eeeEecC
Q 016699 316 GYFLGEVVHPYQAESDVELTLSVGDYVVVRKV---TNN-GWAEGECKG-----KAGWFPF 366 (384)
Q Consensus 316 ~~~~a~alydy~a~~~~ELsf~~GdiI~V~~~---~d~-gW~~G~~~G-----~~G~fP~ 366 (384)
+.++.+.-|.|+...+..|+|..||++.|+.- +.. .|+-.+.+. .+|++|.
T Consensus 503 DSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 503 DSFYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred ceeEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 34567888899999999999999999998765 223 466655533 4799996
No 207
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.01 E-value=1.2e+03 Score=26.32 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 239 LTLQRLIAMVEAERTYHQRVLQILDQLEGEMLS 271 (384)
Q Consensus 239 ~~l~~L~a~veAql~Yh~q~~~iL~qL~~eL~~ 271 (384)
=+|..+.+.++.+-+|+......+..|...+..
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 347788888888888888888888887776654
No 208
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=21.99 E-value=1.7e+02 Score=22.31 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.2
Q ss_pred cCCCCEEE--EEeecCCCeeEEEeCCeeeEecC
Q 016699 336 LSVGDYVV--VRKVTNNGWAEGECKGKAGWFPF 366 (384)
Q Consensus 336 f~~GdiI~--V~~~~d~gW~~G~~~G~~G~fP~ 366 (384)
+.+|+++. |....+.|+|---..|..|++|.
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~ 33 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLF 33 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEH
Confidence 46788877 66677888885444789999993
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.49 E-value=1.1e+03 Score=25.39 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHH
Q 016699 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGA--PLDDARHLAQRYDRMRQEAEAQLVISSSLKPSQAIE 183 (384)
Q Consensus 106 ~~g~al~~~g~a~~~l~~~~~~~~~~~~~~~l~PL~~~~~~~--~lk~~~~~~k~y~~~r~ele~~~~~~~~l~~~rrld 183 (384)
-|-+|--.+.++...|.....++... ++-|..++... .=..+.+++.+|+.+|+.+.+ .+..
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i-----~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~-----------~~~~ 158 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEI-----LDELDELLESEEKNREEIEELKEKYRELRKELLA-----------HSFS 158 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhh
Confidence 36777777777777777777665443 23333333320 123444888889999999999 7654
Q ss_pred HHHHhhhhccCCCCCchHHhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016699 184 VSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI-LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQIL 262 (384)
Q Consensus 184 ~kkr~~k~~e~~~~~~~~~kl~~ae~k~~e~~~~~~~-L~~e~~~~~~~ve~qqq~~~l~~L~a~veAql~Yh~q~~~iL 262 (384)
+-. ..+..+..|...+.+|.+-.+.|.. =..+|..-+..++.. +..|...++.-..++..+...+
T Consensus 159 ~G~---------a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~-----~~~l~~~~e~IP~l~~~l~~~~ 224 (560)
T PF06160_consen 159 YGP---------AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEE-----TDELEEIMEDIPKLYKELQKEF 224 (560)
T ss_pred hch---------hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHh
Confidence 410 0111233566666666666555432 112444444445444 6677777777777777777665
Q ss_pred HHHHHHHHH
Q 016699 263 DQLEGEMLS 271 (384)
Q Consensus 263 ~qL~~eL~~ 271 (384)
..--.+|..
T Consensus 225 P~ql~eL~~ 233 (560)
T PF06160_consen 225 PDQLEELKE 233 (560)
T ss_pred HHHHHHHHH
Confidence 554444443
Done!