BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016700
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 148/285 (51%), Gaps = 34/285 (11%)
Query: 44 VVIYADEGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH 103
VV DEG TL +F K+ + A RG + S+ + G A I VP GTVV
Sbjct: 44 VVFEVDEGLRTLXDFRYKKHFKAIRGEHG------XSKNQHGRNADDXVIKVPPGTVVTD 97
Query: 104 KRGK-LFSDLAHPGDEVLVARGGRGGI--SLLEVPENRRKRMTTLTTNIMRDDTDKVLVL 160
K + +DL G ++ARGGRGG S P N + L+ N
Sbjct: 98 DDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQ---LSEN------------ 142
Query: 161 GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG 220
G+ G+E + L L+V+ADVGLVG P+ GKSTLL+ ++ AKP IADY FTTL+PNLG ++
Sbjct: 143 GEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVET 202
Query: 221 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAA---AENPV 277
D ADLPGLIEGAH G GLG F ID + +P
Sbjct: 203 DD-------GRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPY 255
Query: 278 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI 322
+DY T+ +EL YN ERP I+V NK D PEA + L++ E++
Sbjct: 256 DDYLTINQELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKL 300
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 141/278 (50%), Gaps = 44/278 (15%)
Query: 70 GNVDSMGVLSSQL---------RG----GLAAPTLRIPVPLGT-VVKHKRGKLFSDLAHP 115
G+VDS+ LS + RG G L I VP GT V G+L +DL
Sbjct: 50 GSVDSLSRLSKRTYKAEDGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEE 109
Query: 116 GDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV 175
G VLVARGG GG + R+ + G+ GE+ L L L +
Sbjct: 110 GQTVLVARGGAGGRGNMHFVSPTRQ-------------APRFAEAGEEGEKRRLRLELML 156
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
+ADVGLVG PNAGKS+LLAA+T A P IA YPFTTL PNLG ++ E++ TL
Sbjct: 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---ERF----TL 209
Query: 236 ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYL 295
AD+PG+IEGA GKGLG F +DAA E P+ T+++E+ Y+P L
Sbjct: 210 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADE-PLKTLETLRKEVGAYDPALL 268
Query: 296 ERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 333
RP +V LNK+DL L EE +K D + E
Sbjct: 269 RRPSLVALNKVDL---------LEEEAVKALADALARE 297
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-DPTLG--AEKYSSEATL 235
G+VGLPN GKSTL A+T A + A+YPF T+ PN G + DP L AE E L
Sbjct: 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERIL 64
Query: 236 ------ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXID----------AAAENPVND 279
D+ GL+ GA G+GLG F + A +P++D
Sbjct: 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDD 124
Query: 280 YRTVKEELRMYNPDYLER 297
T+ EL + + D ER
Sbjct: 125 IDTINTELALADLDSCER 142
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 236
VG+VGLPN GKSTL A+T A A+YPF T+ N+G + P Y+ + T A
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 237 --------------DLPGLIEGAHLGKGLGRNF 255
D+ GL++GAH G+GLG F
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 19/93 (20%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA-- 236
VG+VGLPN GKSTL A+T A A+YPF T+ N+G + P Y+ + T A
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV---PLEDERLYALQRTFAKG 60
Query: 237 --------------DLPGLIEGAHLGKGLGRNF 255
D+ GL++GAH G+GLG F
Sbjct: 61 ERVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQF 93
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 139 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVS-LELILRVVADVGLVGLPNAGKSTLLAAIT 197
R++ +++RD D++ L + E + L ++ + V + G PN GKSTLL A+T
Sbjct: 129 RRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALT 188
Query: 198 HAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-LGRNFX 256
AKP+IA YPFTT N+G+ + G +Y + D PGL++ + + +
Sbjct: 189 TAKPEIASYPFTTRGINVGQFED----GYFRYQ----IIDTPGLLDRPISERNEIEKQAI 240
Query: 257 XXXXXXXXXXXXIDAAAEN---PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 313
I +E+ P+ + + EE+ + ++ + PF+VV+NKID+ + +
Sbjct: 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV---HGEFKDLPFLVVINKIDVADEEN 297
Query: 314 --RLQSLTEEI----LKIGCDKVTSETELSSEDAVKSL 345
RL+ +E +KI K T +L E+ +K+L
Sbjct: 298 IKRLEKFVKEKGLNPIKISALKGTG-IDLVKEEIIKTL 334
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDPTLGA 226
++G+VG PN GKST +A T +IA+YPFTT+ N+G L P
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 227 EKYSSEATL-----ADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE------- 274
+Y + L D+ GL+ GAH G+GLG F +DA +
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQP 121
Query: 275 ----NPVNDYRTVKEELRMY 290
+PV D ++ E+ +
Sbjct: 122 TDYHDPVEDIEFLEREIDYW 141
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEA 233
VA VG VG P+ GKSTLL+ +T + + A+Y FTTL +P + R G ++
Sbjct: 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG----------AKI 121
Query: 234 TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEEL 287
+ DLPG+I+GA G+G G+ +D P++ + +++EL
Sbjct: 122 QMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILD--VNKPLHHKQIIEKEL 173
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLD---------GDPTLGAEKY 229
+G+VGLPN GKST +T+++ ++PF T+ PN R+ A K
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 230 SSEATLADLPGLIEGAHLGKGLGRNF 255
+ + D+ GL++GAH G+GLG F
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAF 110
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 20/138 (14%)
Query: 180 GLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRL---DGDPTLGAEKYSSEA-- 233
G+VG PN GKST AIT + + A+YP+ T+ P ++ D E Y ++
Sbjct: 24 GIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 234 ----TLADLPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAE----------NPVND 279
T+ D+ GL +GA G GLG F + A + +P+ D
Sbjct: 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRD 143
Query: 280 YRTVKEELRMYNPDYLER 297
+ +EL + + +++E+
Sbjct: 144 LSIIVDELLIKDAEFVEK 161
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240
L+G PN GK+TL A+T+A + ++P T + + G+ LG + DLPG
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVT----VEKKTGEFLLGEHLIE----ITDLPG 57
Query: 241 LIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLE---R 297
+ +G+ ++ ID + +N E +Y L +
Sbjct: 58 VYSLVANAEGISQD------EQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGK 111
Query: 298 PFIVVLNKIDLPEAR------DRLQSLTEEILKIGCDKV 330
P +V LN +D+ E R ++L+SL +GC +
Sbjct: 112 PVVVALNMMDIAEHRGISIDTEKLESL------LGCSVI 144
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 175 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEAT 234
V+ V LVG PN GK+T+ A+T + + ++P T+ G + E E
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIM--------EYREKEFL 53
Query: 235 LADLPGLIE-GAH-LGKGLGRNF 255
+ DLPG+ AH + + + RNF
Sbjct: 54 VVDLPGIYSLTAHSIDELIARNF 76
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240
L G PN GKS+ + ++ A D+ Y FTT +G D KY + D PG
Sbjct: 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK----LNKYQ----IIDTPG 85
Query: 241 LIEGA 245
L++ A
Sbjct: 86 LLDRA 90
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237
++ L+G PN GKST+ A+T I ++P T + + +G+ EK+ + D
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVD 60
Query: 238 LPGL 241
LPG+
Sbjct: 61 LPGV 64
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237
++ L+G PN GKST+ A+T I ++P T+ + +G+ EK+ + D
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVE----KKEGEFEYNGEKFK----VVD 57
Query: 238 LPGL 241
LPG+
Sbjct: 58 LPGV 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237
++ L+G PN GKST+ A+T I ++P T + + +G+ EK+ + D
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVD 56
Query: 238 LPGL 241
LPG+
Sbjct: 57 LPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 178 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237
++ L+G PN GKST+ A+T I ++P T + + +G+ EK+ + D
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVT----VEKKEGEFEYNGEKFK----VVD 56
Query: 238 LPGL 241
LPG+
Sbjct: 57 LPGV 60
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
V V +VG PN GKSTLL + K + + P G LG + +EA +
Sbjct: 10 VGYVAIVGKPNVGKSTLLNNLLGTK-------VSIISPKAGTTRMR-VLGVKNIPNEAQI 61
Query: 236 A--DLPGLIEGAH---LGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMY 290
D PG+ E LG + IDA +R EE+
Sbjct: 62 IFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDAT-----EGWRPRDEEIYQN 116
Query: 291 NPDYLERPFIVVLNKID 307
L +P IVV+NKID
Sbjct: 117 FIKPLNKPVIVVINKID 133
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
V V +VG PN GKSTLL + K + + P G LG + +EA +
Sbjct: 9 VGYVAIVGKPNVGKSTLLNNLLGTK-------VSIISPKAGTTRMR-VLGVKNIPNEAQI 60
Query: 236 A--DLPGLIEGAH---LGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMY 290
D PG+ E LG + IDA +R EE+
Sbjct: 61 IFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDAT-----EGWRPRDEEIYQN 115
Query: 291 NPDYLERPFIVVLNKID 307
L +P IVV+NKID
Sbjct: 116 FIKPLNKPVIVVINKID 132
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 211
+ V L G PN GK++L A+T K +A++P T+
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV 40
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
V L G PN GK++L A+T K +A++P T+ G + Y+ L DL
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG------VFTYKGYT--INLIDL 59
Query: 239 PG 240
PG
Sbjct: 60 PG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL 211
+ V L G PN GK++L A+T K +A++P T+
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTV 40
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
+GL+G PN+GK+TL +T ++ + ++ T+ G+ + TL DL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--------STTDHQVTLVDL 57
Query: 239 PG 240
PG
Sbjct: 58 PG 59
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
+GL+G PN+GK+TL +T ++ + ++ T+ G+ + TL DL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--------STTDHQVTLVDL 57
Query: 239 PG 240
PG
Sbjct: 58 PG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
+GL+G PN+GK+TL +T ++ + ++ T+ G+ + TL DL
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQF--------STTDHQVTLVDL 57
Query: 239 PG 240
PG
Sbjct: 58 PG 59
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 181 LVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 239
+ G N GKS+ + A+ I +DY TT P ++ P TL D P
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTP 91
Query: 240 GLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLERPF 299
GL + LG+ D+A +D + +E+ E PF
Sbjct: 92 GLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEM--------EIPF 143
Query: 300 IVVLNKID-LPEARDRLQSLTE 320
+VV+NKID L E + L+ L E
Sbjct: 144 VVVVNKIDVLGEKAEELKGLYE 165
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
VGL+G PN+GK+TL +T A+ + ++ T+ G + TL DL
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIF--------ATTDHQVTLVDL 57
Query: 239 PG 240
PG
Sbjct: 58 PG 59
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 172 ILRVVADVGLVGLPNAGKSTLLAAITHA-KPDIADYPFTT--LMPNLGRLDGDPTLGAEK 228
+LR V +VG PN GKS+LL A + + + + D P TT ++ + + G P
Sbjct: 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV----- 274
Query: 229 YSSEATLADLPGLIEGAHLGKGLG-RNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEEL 287
+ D G+ E + + +G IDAA D + + E++
Sbjct: 275 -----QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV 328
Query: 288 RMYNPDYLERPFIVVLNKIDLPE 310
+ RP I+V+NKIDL E
Sbjct: 329 K-------HRPLILVMNKIDLVE 344
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 62 RRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKL 108
R A GG +D + L S RG L P+L + LG V+ KRGKL
Sbjct: 48 RHLKATHGGRIDYIAGLDS--RGFLFGPSLAQELGLGCVLIRKRGKL 92
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
+ ++ L+G PN+GK++L IT + ++P T+ G + K + + +
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV---------KKNKDLEI 53
Query: 236 ADLPGL 241
DLPG+
Sbjct: 54 QDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
+ ++ L+G PN+GK++L IT + ++P T+ G + K + + +
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV---------KKNKDLEI 53
Query: 236 ADLPGL 241
DLPG+
Sbjct: 54 QDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
+ ++ L+G PN+GK++L IT + ++P T+ G + K + + +
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV---------KKNKDLEI 53
Query: 236 ADLPGL 241
DLPG+
Sbjct: 54 QDLPGI 59
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 295 LERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 335
R VL +D P D L L +K+GCD++ SE +
Sbjct: 238 FARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQ 278
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 76 GVLSSQLRGGLAAP----TLRIPVPLGTVVKHKRGKLFSDLAHPGD-EVLVARGGRGGIS 130
G S+QL G A L++ +P GT + K + A+PG EVL+ RG +
Sbjct: 135 GYSSTQLVSGAALAGRPIELKLELPKGTKAAYIDSKELT--AYPGQQEVLLPRGTEYAVG 192
Query: 131 LLEVPENRRKRMTT 144
+++ +N+RK + T
Sbjct: 193 SVKLSDNKRKIIIT 206
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 144 TLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLL--------AA 195
T+ +R + ++++ QHG VS E + V+A G PNAGKSTLL A
Sbjct: 207 TMQIETLRSEVNRLIDSYQHGRIVS-EGVSTVIA-----GKPNAGKSTLLNTLLGQERAI 260
Query: 196 ITHAKPDIADY 206
++H DY
Sbjct: 261 VSHMPGTTRDY 271
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
+ +VG PN GKSTLL + K I T R+ G T GA +A D
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQT---TRHRIVGIHTEGA----YQAIYVDT 60
Query: 239 PGL 241
PGL
Sbjct: 61 PGL 63
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 70 GNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVV 101
G ++G++ +L+G L ++R+PVP G++V
Sbjct: 233 GAAKAVGLVLPELKGKLNGTSMRVPVPTGSIV 264
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 238
+ +VG PN GKSTLL + K I T R+ G T GA +A D
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQT---TRHRIVGIHTEGA----YQAIYVDT 63
Query: 239 PGL 241
PGL
Sbjct: 64 PGL 66
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 213
+ +G+VG N+GK++L ++T + FTT+ P
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 213
+ +G+VG N+GK++L ++T + FTT+ P
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 179 VGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 237
V +VG PN GKS+L + + +AD P T G ++ D L D
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--------RGRFLLVD 55
Query: 238 LPGLIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYLER 297
GL G K + +D AE DY V E LR +
Sbjct: 56 TGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYE-VAEYLRRKG-----K 109
Query: 298 PFIVVLNKIDLPE 310
P I+V K+D P+
Sbjct: 110 PVILVATKVDDPK 122
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP 213
+ +G+VG N+GK++L ++T + FTT+ P
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 235
+ ++ L+G PN+GK++L IT + ++P ++ G + K + + +
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLV---------KKNKDLEI 53
Query: 236 ADLPGL 241
DLPG+
Sbjct: 54 QDLPGI 59
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240
+GL NAGK+TLL + + + TL P + +G K+++ DL G
Sbjct: 28 FLGLDNAGKTTLLHMLKNDR-------LATLQPTWHPTSEELAIGNIKFTT----FDLGG 76
Query: 241 LIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYL-ERPF 299
I+ L K +DAA ++ R + L +N L + PF
Sbjct: 77 HIQARRLWK-------DYFPEVNGIVFLVDAADPERFDEARVELDAL--FNIAELKDVPF 127
Query: 300 IVVLNKIDLPEA 311
+++ NKID P A
Sbjct: 128 VILGNKIDAPNA 139
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 176 VADVGLVGLPNAGKSTLLAAITHAKPDIADYP 207
+ ++ L+G PN+GK++L IT + ++P
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP 34
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 181 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 240
+GL NAGK+TLL + + + TL P + +G K+++ DL G
Sbjct: 6 FLGLDNAGKTTLLHMLKNDR-------LATLQPTWHPTSEELAIGNIKFTT----FDLGG 54
Query: 241 LIEGAHLGKGLGRNFXXXXXXXXXXXXXIDAAAENPVNDYRTVKEELRMYNPDYL-ERPF 299
I+ L K +DAA ++ R + L +N L + PF
Sbjct: 55 HIQARRLWKDY-------FPEVNGIVFLVDAADPERFDEARVELDAL--FNIAELKDVPF 105
Query: 300 IVVLNKIDLPEA 311
+++ NKID P A
Sbjct: 106 VILGNKIDAPNA 117
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 179 VGLVGLPNAGKSTLLAAITH 198
V +VG PN GKSTL AI +
Sbjct: 183 VAIVGRPNVGKSTLFNAILN 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,374,826
Number of Sequences: 62578
Number of extensions: 488958
Number of successful extensions: 1142
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 59
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)